Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0475620 | XP_003602950.1 | 95.028 | 362 | 18 | 0 | 1 | 362 | 1 | 362 | 0.0 | 643 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0475620 | sp|Q6YXH8|CCD41_ORYSJ | 47.075 | 359 | 164 | 9 | 9 | 355 | 12 | 356 | 1.43e-87 | 271 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0475620 | G7J576 | 95.028 | 362 | 18 | 0 | 1 | 362 | 1 | 362 | 0.0 | 643 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0105210 | Msa0475620 | 0.802149 | 6.432572e-49 | -8.615850e-47 |
Msa0475620 | Msa0875630 | 0.805322 | 1.412012e-49 | -8.615850e-47 |
Msa0475620 | Msa0896210 | 0.805116 | 1.559073e-49 | -8.615850e-47 |
Msa0475620 | Msa0977320 | 0.816207 | 6.227559e-52 | -8.615850e-47 |
Msa0475620 | Msa1269590 | 0.918357 | 1.722436e-86 | -8.615850e-47 |
Msa0475620 | Msa1351030 | 0.880767 | 4.183509e-70 | -8.615850e-47 |
Msa0475620 | Msa1372300 | 0.807656 | 4.542779e-50 | -8.615850e-47 |
Msa0271800 | Msa0475620 | 0.808183 | 3.510243e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0475620 | MtrunA17_Chr3g0133211 | 95.028 | 362 | 18 | 0 | 1 | 362 | 1 | 362 | 0.0 | 643 |
Msa0475620 | MtrunA17_Chr4g0041721 | 75.824 | 364 | 64 | 5 | 1 | 362 | 1 | 342 | 0.0 | 526 |
Msa0475620 | MtrunA17_Chr5g0412471 | 51.111 | 360 | 148 | 11 | 1 | 354 | 1 | 338 | 5.29e-104 | 310 |
Msa0475620 | MtrunA17_Chr5g0427191 | 48.588 | 354 | 166 | 8 | 3 | 352 | 4 | 345 | 1.31e-102 | 306 |
Msa0475620 | MtrunA17_Chr8g0367661 | 40.850 | 306 | 157 | 6 | 65 | 352 | 62 | 361 | 8.91e-64 | 207 |
Msa0475620 | MtrunA17_Chr8g0364521 | 42.241 | 232 | 131 | 2 | 62 | 291 | 59 | 289 | 1.53e-53 | 180 |
Msa0475620 | MtrunA17_Chr1g0208231 | 36.364 | 297 | 174 | 7 | 62 | 352 | 72 | 359 | 7.80e-51 | 174 |
Msa0475620 | MtrunA17_Chr5g0414271 | 37.024 | 289 | 156 | 4 | 9 | 295 | 12 | 276 | 2.26e-50 | 171 |
Msa0475620 | MtrunA17_Chr4g0053381 | 37.786 | 262 | 154 | 4 | 95 | 352 | 80 | 336 | 1.47e-49 | 170 |
Msa0475620 | MtrunA17_Chr3g0134261 | 37.165 | 261 | 156 | 5 | 96 | 353 | 84 | 339 | 4.51e-46 | 160 |
Msa0475620 | MtrunA17_Chr5g0401271 | 39.196 | 199 | 113 | 3 | 95 | 290 | 101 | 294 | 4.17e-37 | 137 |
Msa0475620 | MtrunA17_Chr2g0323361 | 32.069 | 290 | 172 | 8 | 74 | 353 | 28 | 302 | 1.93e-35 | 131 |
Msa0475620 | MtrunA17_Chr2g0280941 | 35.268 | 224 | 130 | 6 | 99 | 319 | 43 | 254 | 7.29e-34 | 126 |
Msa0475620 | MtrunA17_Chr3g0134781 | 34.440 | 241 | 128 | 6 | 8 | 246 | 1 | 213 | 4.32e-31 | 120 |
Msa0475620 | MtrunA17_Chr3g0102851 | 31.765 | 170 | 102 | 5 | 92 | 255 | 56 | 217 | 2.92e-15 | 75.5 |
Msa0475620 | MtrunA17_Chr4g0054011 | 29.915 | 234 | 144 | 7 | 97 | 319 | 68 | 292 | 2.94e-15 | 75.9 |
Msa0475620 | MtrunA17_Chr3g0138431 | 29.121 | 182 | 116 | 4 | 74 | 251 | 225 | 397 | 5.20e-15 | 76.3 |
Msa0475620 | MtrunA17_Chr1g0148681 | 28.492 | 179 | 123 | 3 | 73 | 251 | 167 | 340 | 1.17e-14 | 74.7 |
Msa0475620 | MtrunA17_Chr3g0102861 | 30.000 | 170 | 105 | 5 | 92 | 255 | 46 | 207 | 2.22e-13 | 69.7 |
Msa0475620 | MtrunA17_Chr3g0103471 | 30.286 | 175 | 107 | 6 | 92 | 258 | 46 | 213 | 2.25e-12 | 66.6 |
Msa0475620 | MtrunA17_Chr8g0370671 | 30.000 | 170 | 107 | 4 | 91 | 257 | 203 | 363 | 2.71e-12 | 67.8 |
Msa0475620 | MtrunA17_Chr1g0161581 | 28.155 | 206 | 120 | 8 | 51 | 252 | 329 | 510 | 3.56e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0475620 | AT5G65420.1 | 50.545 | 275 | 118 | 6 | 62 | 332 | 42 | 302 | 3.25e-82 | 253 |
Msa0475620 | AT5G65420.3 | 49.123 | 285 | 117 | 7 | 62 | 332 | 42 | 312 | 5.19e-81 | 250 |
Msa0475620 | AT2G22490.1 | 45.338 | 311 | 159 | 5 | 26 | 329 | 25 | 331 | 5.98e-81 | 251 |
Msa0475620 | AT2G22490.2 | 45.016 | 311 | 161 | 4 | 26 | 329 | 25 | 332 | 1.38e-80 | 251 |
Msa0475620 | AT5G10440.1 | 54.545 | 231 | 102 | 1 | 59 | 289 | 31 | 258 | 2.23e-78 | 243 |
Msa0475620 | AT5G65420.4 | 48.708 | 271 | 118 | 5 | 10 | 278 | 9 | 260 | 1.56e-76 | 237 |
Msa0475620 | AT5G10440.2 | 56.983 | 179 | 77 | 0 | 59 | 237 | 31 | 209 | 1.64e-66 | 210 |
Msa0475620 | AT5G65420.2 | 55.932 | 177 | 77 | 1 | 62 | 237 | 42 | 218 | 4.70e-62 | 199 |
Msa0475620 | AT1G70210.1 | 44.444 | 243 | 127 | 3 | 57 | 295 | 45 | 283 | 5.98e-62 | 202 |
Msa0475620 | AT3G50070.1 | 41.518 | 224 | 120 | 4 | 97 | 317 | 86 | 301 | 3.07e-46 | 161 |
Msa0475620 | AT4G34160.1 | 39.604 | 202 | 119 | 2 | 97 | 296 | 87 | 287 | 3.38e-45 | 159 |
Msa0475620 | AT5G67260.1 | 39.474 | 228 | 122 | 6 | 97 | 319 | 96 | 312 | 3.25e-43 | 154 |
Msa0475620 | AT5G67260.2 | 39.207 | 227 | 124 | 5 | 97 | 319 | 96 | 312 | 7.66e-43 | 154 |
Msa0475620 | AT4G37630.2 | 43.421 | 152 | 84 | 2 | 101 | 251 | 76 | 226 | 4.29e-32 | 121 |
Msa0475620 | AT4G03270.1 | 31.338 | 284 | 168 | 11 | 74 | 352 | 35 | 296 | 3.25e-31 | 120 |
Msa0475620 | AT4G37630.3 | 42.857 | 154 | 84 | 3 | 101 | 251 | 76 | 228 | 7.91e-31 | 118 |
Msa0475620 | AT4G37630.1 | 42.857 | 154 | 84 | 3 | 101 | 251 | 76 | 228 | 3.05e-30 | 118 |
Msa0475620 | AT4G03270.2 | 31.338 | 284 | 167 | 12 | 74 | 352 | 35 | 295 | 2.44e-29 | 115 |
Msa0475620 | AT5G02110.1 | 26.383 | 235 | 159 | 6 | 64 | 294 | 45 | 269 | 3.76e-18 | 84.7 |
Msa0475620 | AT1G20610.1 | 31.429 | 210 | 127 | 8 | 82 | 288 | 197 | 392 | 1.16e-15 | 78.2 |
Msa0475620 | AT1G77390.1 | 29.609 | 179 | 119 | 4 | 74 | 251 | 190 | 362 | 9.74e-15 | 75.5 |
Msa0475620 | AT5G02110.2 | 30.612 | 147 | 96 | 3 | 140 | 286 | 92 | 232 | 1.05e-14 | 74.3 |
Msa0475620 | AT4G37490.1 | 29.143 | 175 | 114 | 4 | 77 | 251 | 179 | 343 | 1.44e-14 | 75.1 |
Msa0475620 | AT3G11520.1 | 30.058 | 173 | 109 | 4 | 91 | 260 | 185 | 348 | 1.53e-14 | 74.7 |
Msa0475620 | AT3G11520.2 | 30.058 | 173 | 109 | 4 | 91 | 260 | 185 | 348 | 2.45e-14 | 73.9 |
Msa0475620 | AT1G76310.1 | 26.728 | 217 | 149 | 4 | 72 | 288 | 187 | 393 | 2.04e-13 | 71.6 |
Msa0475620 | AT1G76310.2 | 28.889 | 180 | 118 | 4 | 72 | 251 | 187 | 356 | 5.87e-13 | 69.7 |
Find 112 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATGCAGGTCTTGACTTCT+TGG | 0.156748 | 3_3:-78926291 | Msa0475620:intron |
AATTGAACTAAAAGGGTTAT+TGG | 0.215800 | 3_3:-78927778 | Msa0475620:five_prime_UTR |
CTCTCTCACTTCAGTGTCTA+TGG | 0.221876 | 3_3:+78927943 | None:intergenic |
CTTTATTTAGATTATAGATT+TGG | 0.224239 | 3_3:+78927827 | None:intergenic |
TCCTCAGCCTCTTGATTTGC+AGG | 0.243856 | 3_3:-78926751 | Msa0475620:intron |
TAGGTTGCAGTTTGGAGATT+TGG | 0.254751 | 3_3:-78927483 | Msa0475620:CDS |
GGCTGTAGCTTGCTTATCTT+TGG | 0.277760 | 3_3:-78926799 | Msa0475620:CDS |
GTTCGAGCACATTTCGGTTT+TGG | 0.278825 | 3_3:-78927006 | Msa0475620:CDS |
CATGACCCACCTTATAGTTT+TGG | 0.291361 | 3_3:+78925402 | None:intergenic |
GAATCGATCCAAGTAATTAA+TGG | 0.321350 | 3_3:+78926963 | None:intergenic |
TATGGTTTGGTTCGAAGTTT+CGG | 0.337739 | 3_3:+78927961 | None:intergenic |
TAAAGGGGTGAGTGGGGTTG+AGG | 0.340672 | 3_3:+78928046 | None:intergenic |
CAAATCTATAATCTAAATAA+AGG | 0.347585 | 3_3:-78927826 | Msa0475620:five_prime_UTR |
GAAAGTAACCTTATGGAATA+TGG | 0.352022 | 3_3:+78925556 | None:intergenic |
TTTATTTAGATTATAGATTT+GGG | 0.357724 | 3_3:+78927828 | None:intergenic |
TCACTTCAGTGTCTATGGTT+TGG | 0.358014 | 3_3:+78927948 | None:intergenic |
ACGAGGATTTGTGGCGTTCT+AGG | 0.359940 | 3_3:-78927634 | Msa0475620:CDS |
TTATCTATCCATTAATTACT+TGG | 0.373505 | 3_3:-78926971 | Msa0475620:CDS |
TTTAGGGTAAAGGGGTGAGT+GGG | 0.385838 | 3_3:+78928039 | None:intergenic |
TTTGTTTAATTGAACTAAAA+GGG | 0.388432 | 3_3:-78927785 | Msa0475620:five_prime_UTR |
GTAGTAGCCCAGATGCTAAA+AGG | 0.388944 | 3_3:-78925639 | Msa0475620:CDS |
CAAAGAGTACCAAAACTATA+AGG | 0.393869 | 3_3:-78925411 | Msa0475620:three_prime_UTR |
CACTGTTCAATGACATCTCT+TGG | 0.397078 | 3_3:+78925803 | None:intergenic |
TTTGCTACCATCAATTGCTT+GGG | 0.406060 | 3_3:+78926214 | None:intergenic |
AAACATTTAGGTACCTTTGA+TGG | 0.406098 | 3_3:+78926432 | None:intergenic |
TATTTGAATAGGTTGCAGTT+TGG | 0.406265 | 3_3:-78927491 | Msa0475620:CDS |
CTGGTGCTGATTATTTGAAT+AGG | 0.407191 | 3_3:-78927502 | Msa0475620:CDS |
CTCTGCAATGGCAACTCATC+AGG | 0.411138 | 3_3:+78927572 | None:intergenic |
ATTTGCTACCATCAATTGCT+TGG | 0.417048 | 3_3:+78926213 | None:intergenic |
CTGTGGCAACATGTGTTGTT+GGG | 0.427417 | 3_3:-78926241 | Msa0475620:CDS |
TTATAGGTTCGAGCACATTT+CGG | 0.428580 | 3_3:-78927012 | Msa0475620:intron |
TGAATATGGTGGTGGTGGTT+CGG | 0.429440 | 3_3:-78927666 | Msa0475620:CDS |
TCCTTGGTATTGCATGCTCT+TGG | 0.432351 | 3_3:-78925351 | Msa0475620:three_prime_UTR |
ATTATTGAAGTGTGTTGAAA+AGG | 0.434517 | 3_3:-78925827 | Msa0475620:CDS |
TTTAGCTTCAAACACAAACT+TGG | 0.447842 | 3_3:+78926618 | None:intergenic |
AGCTAAAACCATTCAGAGAA+TGG | 0.449900 | 3_3:-78926602 | Msa0475620:CDS |
AACACACCCATTGGGCTTTG+AGG | 0.450882 | 3_3:+78925736 | None:intergenic |
ATTGCAGAGTGAAGAGTGTT+TGG | 0.451360 | 3_3:-78927558 | Msa0475620:CDS |
CATCATCATTAATCTTAGAA+AGG | 0.451623 | 3_3:+78926509 | None:intergenic |
TAAAAGCTCCATTCTCTGAA+TGG | 0.457326 | 3_3:+78926594 | None:intergenic |
AACACCATCATAACGTTGTT+GGG | 0.457610 | 3_3:+78927595 | None:intergenic |
GACACCAATGCTGGTGGTGG+TGG | 0.467695 | 3_3:-78925682 | Msa0475620:CDS |
AACAAGAGAAAGAGAGAGAG+AGG | 0.470907 | 3_3:+78927989 | None:intergenic |
TGGTGGTGGTGGTTCGGTGG+AGG | 0.471956 | 3_3:-78927660 | Msa0475620:CDS |
AAACATTCAATGAAGGAGAA+TGG | 0.477187 | 3_3:+78926532 | None:intergenic |
GGGGAAACCCAAGCAATTGA+TGG | 0.479575 | 3_3:-78926221 | Msa0475620:CDS |
AATGTATCCAACACACCCAT+TGG | 0.480352 | 3_3:+78925727 | None:intergenic |
AGAGTGTTTGGTTCTGATGT+TGG | 0.485214 | 3_3:-78927546 | Msa0475620:CDS |
TTAGGGTAAAGGGGTGAGTG+GGG | 0.486613 | 3_3:+78928040 | None:intergenic |
GATGCAAAATATTTAACAGC+TGG | 0.490703 | 3_3:+78925309 | None:intergenic |
TGGAGGTGTACGAGGATTTG+TGG | 0.493364 | 3_3:-78927643 | Msa0475620:CDS |
AGCTTGGACAATGCAATTGT+TGG | 0.494353 | 3_3:-78926820 | Msa0475620:CDS |
GAACACCATCATAACGTTGT+TGG | 0.495114 | 3_3:+78927594 | None:intergenic |
GCTGTGGCAACATGTGTTGT+TGG | 0.496061 | 3_3:-78926242 | Msa0475620:CDS |
TCTGATTCAATACATAGAAA+AGG | 0.496974 | 3_3:-78926180 | Msa0475620:intron |
TAACAGTTAAAGAAAATTGG+AGG | 0.497629 | 3_3:-78925280 | Msa0475620:three_prime_UTR |
GTGGGTCATGAGTGGAAGGT+GGG | 0.501745 | 3_3:-78925389 | Msa0475620:three_prime_UTR |
ATTGGGCTTTGAGGCACACT+AGG | 0.501893 | 3_3:+78925745 | None:intergenic |
AATTTCAGAAGGGAAGAGCT+TGG | 0.509011 | 3_3:-78926836 | Msa0475620:intron |
GATGGTGAATATGGTGGTGG+TGG | 0.511384 | 3_3:-78927671 | Msa0475620:CDS |
ATGTATCCAACACACCCATT+GGG | 0.513076 | 3_3:+78925728 | None:intergenic |
CTACAAAAGCTCTGATCCAC+AGG | 0.515810 | 3_3:+78925600 | None:intergenic |
ACAGCTGCTGCAATCTCTGA+TGG | 0.518373 | 3_3:+78926260 | None:intergenic |
TTTGATGATGGTGAATATGG+TGG | 0.519686 | 3_3:-78927677 | Msa0475620:CDS |
GGTGGGTCATGAGTGGAAGG+TGG | 0.520366 | 3_3:-78925390 | Msa0475620:three_prime_UTR |
AGTTAAAGAAAATTGGAGGA+GGG | 0.520476 | 3_3:-78925276 | Msa0475620:three_prime_UTR |
CTAGAAACACAATCAAAACT+TGG | 0.521362 | 3_3:+78927731 | None:intergenic |
AGAAAGGAAACATTCAATGA+AGG | 0.530701 | 3_3:+78926525 | None:intergenic |
AGAGAGAGAGGGTCTTATGA+AGG | 0.531795 | 3_3:+78928001 | None:intergenic |
GTGATAAAATGAATAGTCCT+TGG | 0.532264 | 3_3:-78925367 | Msa0475620:three_prime_UTR |
ATATGGTGGTGGTGGTTCGG+TGG | 0.533539 | 3_3:-78927663 | Msa0475620:CDS |
TGAACCACCACCACCAGCAT+TGG | 0.536808 | 3_3:+78925678 | None:intergenic |
AGTCATCGATTGGATTCAAA+AGG | 0.537030 | 3_3:-78927441 | Msa0475620:intron |
ACCTGCAAATCAAGAGGCTG+AGG | 0.539718 | 3_3:+78926750 | None:intergenic |
CTAGAAATGAAGTCATCGAT+TGG | 0.540927 | 3_3:-78927451 | Msa0475620:CDS |
TAGTACTCAGCACATTGAAG+TGG | 0.542367 | 3_3:-78926573 | Msa0475620:CDS |
GTTAAAGAAAATTGGAGGAG+GGG | 0.543986 | 3_3:-78925275 | Msa0475620:three_prime_UTR |
GATGATGGTGAATATGGTGG+TGG | 0.549715 | 3_3:-78927674 | Msa0475620:CDS |
CAGGGAATTCATACACAGAA+AGG | 0.549830 | 3_3:+78926941 | None:intergenic |
AGTGTGCCTCAAAGCCCAAT+GGG | 0.552076 | 3_3:-78925742 | Msa0475620:CDS |
AAAGAGTGTCAGCAATGGCC+TGG | 0.553578 | 3_3:-78927521 | Msa0475620:CDS |
ATCAGAGATTGCAGCAGCTG+TGG | 0.553736 | 3_3:-78926258 | Msa0475620:CDS |
ATGACCCAACAACGTTATGA+TGG | 0.554188 | 3_3:-78927599 | Msa0475620:CDS |
TAGTGTGCCTCAAAGCCCAA+TGG | 0.559807 | 3_3:-78925743 | Msa0475620:CDS |
TATCTTCTTCAGTGCAAAGA+AGG | 0.566069 | 3_3:+78927708 | None:intergenic |
CAGTTAAAGAAAATTGGAGG+AGG | 0.574320 | 3_3:-78925277 | Msa0475620:three_prime_UTR |
TCAAAGCCCAATGGGTGTGT+TGG | 0.579780 | 3_3:-78925734 | Msa0475620:CDS |
CTTATATCAAGCACCATCAA+AGG | 0.583083 | 3_3:-78926445 | Msa0475620:intron |
TCATTGAACAGTGTGTTCAC+TGG | 0.586627 | 3_3:-78925793 | Msa0475620:CDS |
CACTGAAGTGAGAGAGTGAG+TGG | 0.594748 | 3_3:-78927936 | Msa0475620:five_prime_UTR |
ACTATAAGGTGGGTCATGAG+TGG | 0.595414 | 3_3:-78925397 | Msa0475620:three_prime_UTR |
AAACACTCTTCACTCTGCAA+TGG | 0.596088 | 3_3:+78927560 | None:intergenic |
GAACAGTGTGTTCACTGGCA+AGG | 0.596096 | 3_3:-78925788 | Msa0475620:CDS |
TTGGGCTTTGAGGCACACTA+GGG | 0.596531 | 3_3:+78925746 | None:intergenic |
TAAGGTGGGTCATGAGTGGA+AGG | 0.597213 | 3_3:-78925393 | Msa0475620:three_prime_UTR |
ATCTTTGGCAGCTAAAGTAG+AGG | 0.600255 | 3_3:-78926784 | Msa0475620:CDS |
AGAGTACCAAAACTATAAGG+TGG | 0.600788 | 3_3:-78925408 | Msa0475620:three_prime_UTR |
AATCCTACCTGCAAATCAAG+AGG | 0.610223 | 3_3:+78926744 | None:intergenic |
CTATTCAAATAATCAGCACC+AGG | 0.612948 | 3_3:+78927503 | None:intergenic |
ATGATGATAAGAGTTCATCA+AGG | 0.613251 | 3_3:-78926492 | Msa0475620:CDS |
TGGTTCGGTGGAGGTGTACG+AGG | 0.618407 | 3_3:-78927651 | Msa0475620:CDS |
GAGTACCAAAACTATAAGGT+GGG | 0.624039 | 3_3:-78925407 | Msa0475620:three_prime_UTR |
ACAAGAGAAAGAGAGAGAGA+GGG | 0.634472 | 3_3:+78927990 | None:intergenic |
GATGACACCAATGCTGGTGG+TGG | 0.635406 | 3_3:-78925685 | Msa0475620:CDS |
AAAAGTGATGACACCAATGC+TGG | 0.640482 | 3_3:-78925691 | Msa0475620:CDS |
ATGGATAGATAAGCACAAAG+AGG | 0.659013 | 3_3:+78926982 | None:intergenic |
GCCAAGAGCATGCAATACCA+AGG | 0.661537 | 3_3:+78925350 | None:intergenic |
TGTGGCAACATGTGTTGTTG+GGG | 0.663318 | 3_3:-78926240 | Msa0475620:CDS |
AGGAAGCTAAACAAAGCCTG+TGG | 0.672496 | 3_3:-78925616 | Msa0475620:CDS |
AGAGATGAGTATGTACAATG+TGG | 0.690153 | 3_3:+78928073 | None:intergenic |
GTAGCCCAGATGCTAAAAGG+AGG | 0.696973 | 3_3:-78925636 | Msa0475620:CDS |
AGTGATGACACCAATGCTGG+TGG | 0.729525 | 3_3:-78925688 | Msa0475620:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTATTTAGATTATAGATTT+GGG | + | chr3_3:78925435-78925454 | None:intergenic | 10.0% |
!!! | CTTTATTTAGATTATAGATT+TGG | + | chr3_3:78925436-78925455 | None:intergenic | 15.0% |
!! | CAAATCTATAATCTAAATAA+AGG | - | chr3_3:78925434-78925453 | Msa0475620:three_prime_UTR | 15.0% |
!!! | TTTTGTTTAATTGAACTAAA+AGG | - | chr3_3:78925474-78925493 | Msa0475620:three_prime_UTR | 15.0% |
!! | TTTGTTTAATTGAACTAAAA+GGG | - | chr3_3:78925475-78925494 | Msa0475620:three_prime_UTR | 15.0% |
!!! | TTTTTATGAAATCTTTTTGA+TGG | - | chr3_3:78925903-78925922 | Msa0475620:intron | 15.0% |
!!! | TTTTATGAAATCTTTTTGAT+GGG | - | chr3_3:78925904-78925923 | Msa0475620:intron | 15.0% |
!!! | TTTAAGTTGATTAATTTTGA+TGG | - | chr3_3:78926938-78926957 | Msa0475620:intron | 15.0% |
!!! | TTTTAACAGTTAAAGAAAAT+TGG | - | chr3_3:78927977-78927996 | Msa0475620:five_prime_UTR | 15.0% |
!!! | TATTGGATTTTCTGTTATTT+TGG | - | chr3_3:78925499-78925518 | Msa0475620:three_prime_UTR | 20.0% |
!!! | TTAATTTTTCATCAAAACAG+TGG | - | chr3_3:78925952-78925971 | Msa0475620:intron | 20.0% |
!!! | CAATTTTCTTTGTGATTTAT+AGG | - | chr3_3:78926232-78926251 | Msa0475620:CDS | 20.0% |
!! | TTATCTATCCATTAATTACT+TGG | - | chr3_3:78926289-78926308 | Msa0475620:intron | 20.0% |
!! | AATACATAGAAAAGGTAAAA+TGG | - | chr3_3:78927088-78927107 | Msa0475620:intron | 20.0% |
!! | TATTAACAATGTGTTAATTG+TGG | - | chr3_3:78927396-78927415 | Msa0475620:intron | 20.0% |
! | AATTGAACTAAAAGGGTTAT+TGG | - | chr3_3:78925482-78925501 | Msa0475620:three_prime_UTR | 25.0% |
!!! | GATTTTCTGTTATTTTGGAA+TGG | - | chr3_3:78925504-78925523 | Msa0475620:three_prime_UTR | 25.0% |
!! | ATATTGATTGTGAAAACTGA+AGG | - | chr3_3:78925866-78925885 | Msa0475620:intron | 25.0% |
!! | TATTGATTGTGAAAACTGAA+GGG | - | chr3_3:78925867-78925886 | Msa0475620:intron | 25.0% |
! | TTTAATGAACTATCCCTTTA+TGG | - | chr3_3:78926005-78926024 | Msa0475620:intron | 25.0% |
! | TTGTGATATGTATCCATAAA+GGG | + | chr3_3:78926021-78926040 | None:intergenic | 25.0% |
! | ATTGTGATATGTATCCATAA+AGG | + | chr3_3:78926022-78926041 | None:intergenic | 25.0% |
! | TCGTTATTCATTAACTTACA+GGG | + | chr3_3:78926340-78926359 | None:intergenic | 25.0% |
! | GAAGTTCAACACAAAAAAAT+AGG | - | chr3_3:78926360-78926379 | Msa0475620:intron | 25.0% |
! | TTATGTTTCCAATTTCAGAA+GGG | - | chr3_3:78926414-78926433 | Msa0475620:intron | 25.0% |
! | CATCATCATTAATCTTAGAA+AGG | + | chr3_3:78926754-78926773 | None:intergenic | 25.0% |
! | AGTGAAAACAATCATGAATT+AGG | - | chr3_3:78926911-78926930 | Msa0475620:intron | 25.0% |
! | TCTGATTCAATACATAGAAA+AGG | - | chr3_3:78927080-78927099 | Msa0475620:intron | 25.0% |
!! | TACATTGTTTTCTTGTCATT+TGG | + | chr3_3:78927123-78927142 | None:intergenic | 25.0% |
! | CTCATATAACAACTTAAACA+AGG | - | chr3_3:78927273-78927292 | Msa0475620:intron | 25.0% |
! | ATTATTGAAGTGTGTTGAAA+AGG | - | chr3_3:78927433-78927452 | Msa0475620:intron | 25.0% |
!! | GAATTTTACCATATTCCATA+AGG | - | chr3_3:78927696-78927715 | Msa0475620:CDS | 25.0% |
!!! | TTTTTTTGGTATTGAACTGA+GGG | + | chr3_3:78927769-78927788 | None:intergenic | 25.0% |
! | TAACAGTTAAAGAAAATTGG+AGG | - | chr3_3:78927980-78927999 | Msa0475620:five_prime_UTR | 25.0% |
! | TTTTAATGATGTTGTGTGTG+TGG | + | chr3_3:78925350-78925369 | None:intergenic | 30.0% |
CTAGAAACACAATCAAAACT+TGG | + | chr3_3:78925532-78925551 | None:intergenic | 30.0% | |
!!! | GTTTTTGATGATGGTGAATA+TGG | - | chr3_3:78925580-78925599 | Msa0475620:three_prime_UTR | 30.0% |
TATTTGAATAGGTTGCAGTT+TGG | - | chr3_3:78925769-78925788 | Msa0475620:CDS | 30.0% | |
! | ATTTTTCATCAAAACAGTGG+CGG | - | chr3_3:78925955-78925974 | Msa0475620:intron | 30.0% |
! | ATCCATTGCTTGATAACTAT+TGG | - | chr3_3:78926059-78926078 | Msa0475620:intron | 30.0% |
TCATCAATTCATCAGATACA+AGG | + | chr3_3:78926090-78926109 | None:intergenic | 30.0% | |
! | TGATGAATTGATGACTTGAA+TGG | - | chr3_3:78926096-78926115 | Msa0475620:intron | 30.0% |
TAGCACATTTGATTGATGAA+TGG | - | chr3_3:78926129-78926148 | Msa0475620:intron | 30.0% | |
!! | ATTGATGAATGGATTGAGAT+TGG | - | chr3_3:78926140-78926159 | Msa0475620:intron | 30.0% |
GAATCGATCCAAGTAATTAA+TGG | + | chr3_3:78926300-78926319 | None:intergenic | 30.0% | |
CTCGTTATTCATTAACTTAC+AGG | + | chr3_3:78926341-78926360 | None:intergenic | 30.0% | |
! | ATAGGCTTTATATTCTGCAT+TGG | - | chr3_3:78926378-78926397 | Msa0475620:intron | 30.0% |
GTTATGTTTCCAATTTCAGA+AGG | - | chr3_3:78926413-78926432 | Msa0475620:intron | 30.0% | |
AACTTGTCAATTTCAATGCT+TGG | - | chr3_3:78926542-78926561 | Msa0475620:CDS | 30.0% | |
! | TTTAGCTTCAAACACAAACT+TGG | + | chr3_3:78926645-78926664 | None:intergenic | 30.0% |
AAACATTCAATGAAGGAGAA+TGG | + | chr3_3:78926731-78926750 | None:intergenic | 30.0% | |
AGAAAGGAAACATTCAATGA+AGG | + | chr3_3:78926738-78926757 | None:intergenic | 30.0% | |
ATGATGATAAGAGTTCATCA+AGG | - | chr3_3:78926768-78926787 | Msa0475620:CDS | 30.0% | |
AAACATTTAGGTACCTTTGA+TGG | + | chr3_3:78926831-78926850 | None:intergenic | 30.0% | |
ACATAGAAAAGGTAAAATGG+TGG | - | chr3_3:78927091-78927110 | Msa0475620:intron | 30.0% | |
!! | TGTTTTCTTGTCATTTGGAA+AGG | + | chr3_3:78927118-78927137 | None:intergenic | 30.0% |
TTAGTTCATACATACTCTCA+AGG | - | chr3_3:78927161-78927180 | Msa0475620:intron | 30.0% | |
GTGTTAATTGTGGTTATTAC+AGG | - | chr3_3:78927406-78927425 | Msa0475620:intron | 30.0% | |
GAAAGTAACCTTATGGAATA+TGG | + | chr3_3:78927707-78927726 | None:intergenic | 30.0% | |
!!! | ACACATAATGTCCTTTTTTG+GGG | + | chr3_3:78927729-78927748 | None:intergenic | 30.0% |
!!! | CACACATAATGTCCTTTTTT+GGG | + | chr3_3:78927730-78927749 | None:intergenic | 30.0% |
!!! | ACACACATAATGTCCTTTTT+TGG | + | chr3_3:78927731-78927750 | None:intergenic | 30.0% |
! | AGGACATTATGTGTGTTTTA+TGG | - | chr3_3:78927735-78927754 | Msa0475620:CDS | 30.0% |
! | CATTATGTGTGTTTTATGGA+AGG | - | chr3_3:78927739-78927758 | Msa0475620:CDS | 30.0% |
!!! | TTTTTTGGTATTGAACTGAG+GGG | + | chr3_3:78927768-78927787 | None:intergenic | 30.0% |
!!! | CTTTTTTTGGTATTGAACTG+AGG | + | chr3_3:78927770-78927789 | None:intergenic | 30.0% |
CTCAGTTCAATACCAAAAAA+AGG | - | chr3_3:78927768-78927787 | Msa0475620:five_prime_UTR | 30.0% | |
!!! | GCTATATCTCTTCCTTTTTT+TGG | + | chr3_3:78927783-78927802 | None:intergenic | 30.0% |
!! | CAAAGAGTACCAAAACTATA+AGG | - | chr3_3:78927849-78927868 | Msa0475620:five_prime_UTR | 30.0% |
GTGATAAAATGAATAGTCCT+TGG | - | chr3_3:78927893-78927912 | Msa0475620:five_prime_UTR | 30.0% | |
GATGCAAAATATTTAACAGC+TGG | + | chr3_3:78927954-78927973 | None:intergenic | 30.0% | |
AGTTAAAGAAAATTGGAGGA+GGG | - | chr3_3:78927984-78928003 | Msa0475620:five_prime_UTR | 30.0% | |
AGAGATGAGTATGTACAATG+TGG | + | chr3_3:78925190-78925209 | None:intergenic | 35.0% | |
!! | TATGGTTTGGTTCGAAGTTT+CGG | + | chr3_3:78925302-78925321 | None:intergenic | 35.0% |
TATCTTCTTCAGTGCAAAGA+AGG | + | chr3_3:78925555-78925574 | None:intergenic | 35.0% | |
!! | GATAGCAGTGTTTTTGATGA+TGG | - | chr3_3:78925571-78925590 | Msa0475620:three_prime_UTR | 35.0% |
!! | TTTGATGATGGTGAATATGG+TGG | - | chr3_3:78925583-78925602 | Msa0475620:exon | 35.0% |
AACACCATCATAACGTTGTT+GGG | + | chr3_3:78925668-78925687 | None:intergenic | 35.0% | |
CTATTCAAATAATCAGCACC+AGG | + | chr3_3:78925760-78925779 | None:intergenic | 35.0% | |
!! | CTGGTGCTGATTATTTGAAT+AGG | - | chr3_3:78925758-78925777 | Msa0475620:CDS | 35.0% |
! | GTTTGGAGATTTGGATTTTC+AGG | - | chr3_3:78925786-78925805 | Msa0475620:CDS | 35.0% |
CTAGAAATGAAGTCATCGAT+TGG | - | chr3_3:78925809-78925828 | Msa0475620:CDS | 35.0% | |
! | AGTCATCGATTGGATTCAAA+AGG | - | chr3_3:78925819-78925838 | Msa0475620:CDS | 35.0% |
!!! | CGTTTTAATTGGGTTTGGAT+TGG | - | chr3_3:78925981-78926000 | Msa0475620:intron | 35.0% |
GTCCAATAGTTATCAAGCAA+TGG | + | chr3_3:78926064-78926083 | None:intergenic | 35.0% | |
! | GGATTGAGATTGGATTAGAT+TGG | - | chr3_3:78926150-78926169 | Msa0475620:intron | 35.0% |
! | GAGATTGGATTAGATTGGAT+TGG | - | chr3_3:78926155-78926174 | Msa0475620:intron | 35.0% |
TTATAGGTTCGAGCACATTT+CGG | - | chr3_3:78926248-78926267 | Msa0475620:CDS | 35.0% | |
ATGGATAGATAAGCACAAAG+AGG | + | chr3_3:78926281-78926300 | None:intergenic | 35.0% | |
AGCTAAAACCATTCAGAGAA+TGG | - | chr3_3:78926658-78926677 | Msa0475620:intron | 35.0% | |
TAAAAGCTCCATTCTCTGAA+TGG | + | chr3_3:78926669-78926688 | None:intergenic | 35.0% | |
CTTATATCAAGCACCATCAA+AGG | - | chr3_3:78926815-78926834 | Msa0475620:CDS | 35.0% | |
TCACTTGAGCAATGAAGTTA+GGG | + | chr3_3:78926858-78926877 | None:intergenic | 35.0% | |
TTCACTTGAGCAATGAAGTT+AGG | + | chr3_3:78926859-78926878 | None:intergenic | 35.0% | |
! | ATGATTGTTTTCACTGCAAG+GGG | + | chr3_3:78926906-78926925 | None:intergenic | 35.0% |
! | CATGATTGTTTTCACTGCAA+GGG | + | chr3_3:78926907-78926926 | None:intergenic | 35.0% |
! | TCATGATTGTTTTCACTGCA+AGG | + | chr3_3:78926908-78926927 | None:intergenic | 35.0% |
TTTGCTACCATCAATTGCTT+GGG | + | chr3_3:78927049-78927068 | None:intergenic | 35.0% | |
! | ATTTGCTACCATCAATTGCT+TGG | + | chr3_3:78927050-78927069 | None:intergenic | 35.0% |
!! | TTTTGGGGAAAGTAACCTTA+TGG | + | chr3_3:78927714-78927733 | None:intergenic | 35.0% |
! | AAGGTTACTTTCCCCAAAAA+AGG | - | chr3_3:78927715-78927734 | Msa0475620:CDS | 35.0% |
! | AGAGTACCAAAACTATAAGG+TGG | - | chr3_3:78927852-78927871 | Msa0475620:five_prime_UTR | 35.0% |
GAGTACCAAAACTATAAGGT+GGG | - | chr3_3:78927853-78927872 | Msa0475620:five_prime_UTR | 35.0% | |
CAGTTAAAGAAAATTGGAGG+AGG | - | chr3_3:78927983-78928002 | Msa0475620:five_prime_UTR | 35.0% | |
GTTAAAGAAAATTGGAGGAG+GGG | - | chr3_3:78927985-78928004 | Msa0475620:five_prime_UTR | 35.0% | |
!! | GTAGAGTCTGAGATTTTCTT+TGG | - | chr3_3:78928038-78928057 | Msa0475620:five_prime_UTR | 35.0% |
!!! | ACGCCTCTTTTTAGGGTAAA+GGG | + | chr3_3:78925233-78925252 | None:intergenic | 40.0% |
!!! | AACGCCTCTTTTTAGGGTAA+AGG | + | chr3_3:78925234-78925253 | None:intergenic | 40.0% |
!! | TTACCCTAAAAAGAGGCGTT+CGG | - | chr3_3:78925234-78925253 | Msa0475620:three_prime_UTR | 40.0% |
ACAAGAGAAAGAGAGAGAGA+GGG | + | chr3_3:78925273-78925292 | None:intergenic | 40.0% | |
AACAAGAGAAAGAGAGAGAG+AGG | + | chr3_3:78925274-78925293 | None:intergenic | 40.0% | |
TCACTTCAGTGTCTATGGTT+TGG | + | chr3_3:78925315-78925334 | None:intergenic | 40.0% | |
ATGACCCAACAACGTTATGA+TGG | - | chr3_3:78925661-78925680 | Msa0475620:CDS | 40.0% | |
GAACACCATCATAACGTTGT+TGG | + | chr3_3:78925669-78925688 | None:intergenic | 40.0% | |
AAACACTCTTCACTCTGCAA+TGG | + | chr3_3:78925703-78925722 | None:intergenic | 40.0% | |
!! | ATTGCAGAGTGAAGAGTGTT+TGG | - | chr3_3:78925702-78925721 | Msa0475620:CDS | 40.0% |
!! | AGAGTGTTTGGTTCTGATGT+TGG | - | chr3_3:78925714-78925733 | Msa0475620:CDS | 40.0% |
!! | TGGAAAAAGAGTGTCAGCAA+TGG | - | chr3_3:78925734-78925753 | Msa0475620:CDS | 40.0% |
TAGGTTGCAGTTTGGAGATT+TGG | - | chr3_3:78925777-78925796 | Msa0475620:CDS | 40.0% | |
CAGGGAATTCATACACAGAA+AGG | + | chr3_3:78926322-78926341 | None:intergenic | 40.0% | |
!! | AAGCTCTTCCCTTCTGAAAT+TGG | + | chr3_3:78926425-78926444 | None:intergenic | 40.0% |
AATTTCAGAAGGGAAGAGCT+TGG | - | chr3_3:78926424-78926443 | Msa0475620:intron | 40.0% | |
AGCTTGGACAATGCAATTGT+TGG | - | chr3_3:78926440-78926459 | Msa0475620:intron | 40.0% | |
ATCTTTGGCAGCTAAAGTAG+AGG | - | chr3_3:78926476-78926495 | Msa0475620:CDS | 40.0% | |
AATCCTACCTGCAAATCAAG+AGG | + | chr3_3:78926519-78926538 | None:intergenic | 40.0% | |
!! | CTTGATTTGCAGGTAGGATT+TGG | - | chr3_3:78926519-78926538 | Msa0475620:CDS | 40.0% |
!! | GTCGATTTTTGTGTGCAGAT+TGG | - | chr3_3:78926614-78926633 | Msa0475620:CDS | 40.0% |
TAGTACTCAGCACATTGAAG+TGG | - | chr3_3:78926687-78926706 | Msa0475620:intron | 40.0% | |
AGTTAGGGAGGGAAACATTT+AGG | + | chr3_3:78926843-78926862 | None:intergenic | 40.0% | |
TTGAGCAATGAAGTTAGGGA+GGG | + | chr3_3:78926854-78926873 | None:intergenic | 40.0% | |
! | TGATGGTGTGAATTCAATGC+AGG | - | chr3_3:78926955-78926974 | Msa0475620:CDS | 40.0% |
CACTGTTCAATGACATCTCT+TGG | + | chr3_3:78927460-78927479 | None:intergenic | 40.0% | |
TCATTGAACAGTGTGTTCAC+TGG | - | chr3_3:78927467-78927486 | Msa0475620:CDS | 40.0% | |
ATGTATCCAACACACCCATT+GGG | + | chr3_3:78927535-78927554 | None:intergenic | 40.0% | |
AATGTATCCAACACACCCAT+TGG | + | chr3_3:78927536-78927555 | None:intergenic | 40.0% | |
AAAAGTGATGACACCAATGC+TGG | - | chr3_3:78927569-78927588 | Msa0475620:CDS | 40.0% | |
! | TCAGAGCTTTTGTAGTCATG+TGG | - | chr3_3:78927668-78927687 | Msa0475620:CDS | 40.0% |
! | CTTTTGTAGTCATGTGGCAT+GGG | - | chr3_3:78927674-78927693 | Msa0475620:CDS | 40.0% |
! | CATGACCCACCTTATAGTTT+TGG | + | chr3_3:78927861-78927880 | None:intergenic | 40.0% |
! | TTTAGGGTAAAGGGGTGAGT+GGG | + | chr3_3:78925224-78925243 | None:intergenic | 45.0% |
!!! | TTTTAGGGTAAAGGGGTGAG+TGG | + | chr3_3:78925225-78925244 | None:intergenic | 45.0% |
CACCCCTTTACCCTAAAAAG+AGG | - | chr3_3:78925227-78925246 | Msa0475620:three_prime_UTR | 45.0% | |
!!! | CGCCTCTTTTTAGGGTAAAG+GGG | + | chr3_3:78925232-78925251 | None:intergenic | 45.0% |
! | GAACCGAACGCCTCTTTTTA+GGG | + | chr3_3:78925240-78925259 | None:intergenic | 45.0% |
! | AGAGAGAGAGGGTCTTATGA+AGG | + | chr3_3:78925262-78925281 | None:intergenic | 45.0% |
CTCTCTCACTTCAGTGTCTA+TGG | + | chr3_3:78925320-78925339 | None:intergenic | 45.0% | |
! | GATGATGGTGAATATGGTGG+TGG | - | chr3_3:78925586-78925605 | Msa0475620:exon | 45.0% |
!! | TGAATATGGTGGTGGTGGTT+CGG | - | chr3_3:78925594-78925613 | Msa0475620:exon | 45.0% |
TTTCATCAAAACAGTGGCGG+CGG | - | chr3_3:78925958-78925977 | Msa0475620:intron | 45.0% | |
! | GTTCGAGCACATTTCGGTTT+TGG | - | chr3_3:78926254-78926273 | Msa0475620:CDS | 45.0% |
!! | GGCTGTAGCTTGCTTATCTT+TGG | - | chr3_3:78926461-78926480 | Msa0475620:CDS | 45.0% |
CTTGAGCAATGAAGTTAGGG+AGG | + | chr3_3:78926855-78926874 | None:intergenic | 45.0% | |
! | TTGTTTTCACTGCAAGGGGT+TGG | + | chr3_3:78926902-78926921 | None:intergenic | 45.0% |
CAATGCAGGTCTTGACTTCT+TGG | - | chr3_3:78926969-78926988 | Msa0475620:CDS | 45.0% | |
! | CTGTGGCAACATGTGTTGTT+GGG | - | chr3_3:78927019-78927038 | Msa0475620:intron | 45.0% |
! | TGTGGCAACATGTGTTGTTG+GGG | - | chr3_3:78927020-78927039 | Msa0475620:intron | 45.0% |
GTAGTAGCCCAGATGCTAAA+AGG | - | chr3_3:78927621-78927640 | Msa0475620:CDS | 45.0% | |
! | GCTTCCTCCTTTTAGCATCT+GGG | + | chr3_3:78927631-78927650 | None:intergenic | 45.0% |
! | AGCTTCCTCCTTTTAGCATC+TGG | + | chr3_3:78927632-78927651 | None:intergenic | 45.0% |
AGGAAGCTAAACAAAGCCTG+TGG | - | chr3_3:78927644-78927663 | Msa0475620:CDS | 45.0% | |
! | CTACAAAAGCTCTGATCCAC+AGG | + | chr3_3:78927663-78927682 | None:intergenic | 45.0% |
! | GCTTTTGTAGTCATGTGGCA+TGG | - | chr3_3:78927673-78927692 | Msa0475620:CDS | 45.0% |
ACTATAAGGTGGGTCATGAG+TGG | - | chr3_3:78927863-78927882 | Msa0475620:five_prime_UTR | 45.0% | |
TCCTTGGTATTGCATGCTCT+TGG | - | chr3_3:78927909-78927928 | Msa0475620:five_prime_UTR | 45.0% | |
TTAGGGTAAAGGGGTGAGTG+GGG | + | chr3_3:78925223-78925242 | None:intergenic | 50.0% | |
! | GGAACCGAACGCCTCTTTTT+AGG | + | chr3_3:78925241-78925260 | None:intergenic | 50.0% |
CACTGAAGTGAGAGAGTGAG+TGG | - | chr3_3:78925324-78925343 | Msa0475620:three_prime_UTR | 50.0% | |
!! | GATGGTGAATATGGTGGTGG+TGG | - | chr3_3:78925589-78925608 | Msa0475620:exon | 50.0% |
! | TGGAGGTGTACGAGGATTTG+TGG | - | chr3_3:78925617-78925636 | Msa0475620:CDS | 50.0% |
ACGAGGATTTGTGGCGTTCT+AGG | - | chr3_3:78925626-78925645 | Msa0475620:CDS | 50.0% | |
CTCTGCAATGGCAACTCATC+AGG | + | chr3_3:78925691-78925710 | None:intergenic | 50.0% | |
!! | AAAGAGTGTCAGCAATGGCC+TGG | - | chr3_3:78925739-78925758 | Msa0475620:CDS | 50.0% |
!!! | GGCGGCGTTTTAATTGGGTT+TGG | - | chr3_3:78925976-78925995 | Msa0475620:intron | 50.0% |
!! | TCCTCAGCCTCTTGATTTGC+AGG | - | chr3_3:78926509-78926528 | Msa0475620:CDS | 50.0% |
ACCTGCAAATCAAGAGGCTG+AGG | + | chr3_3:78926513-78926532 | None:intergenic | 50.0% | |
!! | CAGCCTCTTGATTTGCAGGT+AGG | - | chr3_3:78926513-78926532 | Msa0475620:CDS | 50.0% |
ACAGCTGCTGCAATCTCTGA+TGG | + | chr3_3:78927003-78927022 | None:intergenic | 50.0% | |
ATCAGAGATTGCAGCAGCTG+TGG | - | chr3_3:78927002-78927021 | Msa0475620:CDS | 50.0% | |
GCTGTGGCAACATGTGTTGT+TGG | - | chr3_3:78927018-78927037 | Msa0475620:intron | 50.0% | |
GGGGAAACCCAAGCAATTGA+TGG | - | chr3_3:78927039-78927058 | Msa0475620:intron | 50.0% | |
GAACAGTGTGTTCACTGGCA+AGG | - | chr3_3:78927472-78927491 | Msa0475620:CDS | 50.0% | |
!! | TTGGGCTTTGAGGCACACTA+GGG | + | chr3_3:78927517-78927536 | None:intergenic | 50.0% |
!! | ATTGGGCTTTGAGGCACACT+AGG | + | chr3_3:78927518-78927537 | None:intergenic | 50.0% |
TAGTGTGCCTCAAAGCCCAA+TGG | - | chr3_3:78927517-78927536 | Msa0475620:CDS | 50.0% | |
AGTGTGCCTCAAAGCCCAAT+GGG | - | chr3_3:78927518-78927537 | Msa0475620:CDS | 50.0% | |
AACACACCCATTGGGCTTTG+AGG | + | chr3_3:78927527-78927546 | None:intergenic | 50.0% | |
TCAAAGCCCAATGGGTGTGT+TGG | - | chr3_3:78927526-78927545 | Msa0475620:CDS | 50.0% | |
AGTGATGACACCAATGCTGG+TGG | - | chr3_3:78927572-78927591 | Msa0475620:CDS | 50.0% | |
GTAGCCCAGATGCTAAAAGG+AGG | - | chr3_3:78927624-78927643 | Msa0475620:CDS | 50.0% | |
TAAGGTGGGTCATGAGTGGA+AGG | - | chr3_3:78927867-78927886 | Msa0475620:five_prime_UTR | 50.0% | |
! | GCCAAGAGCATGCAATACCA+AGG | + | chr3_3:78927913-78927932 | None:intergenic | 50.0% |
TAAAGGGGTGAGTGGGGTTG+AGG | + | chr3_3:78925217-78925236 | None:intergenic | 55.0% | |
!! | ATATGGTGGTGGTGGTTCGG+TGG | - | chr3_3:78925597-78925616 | Msa0475620:exon | 55.0% |
!! | AGTGGCGGCGGCGTTTTAAT+TGG | - | chr3_3:78925970-78925989 | Msa0475620:intron | 55.0% |
!!! | GTGGCGGCGGCGTTTTAATT+GGG | - | chr3_3:78925971-78925990 | Msa0475620:intron | 55.0% |
GATGACACCAATGCTGGTGG+TGG | - | chr3_3:78927575-78927594 | Msa0475620:CDS | 55.0% | |
TGAACCACCACCACCAGCAT+TGG | + | chr3_3:78927585-78927604 | None:intergenic | 55.0% | |
GTGGGTCATGAGTGGAAGGT+GGG | - | chr3_3:78927871-78927890 | Msa0475620:five_prime_UTR | 55.0% | |
!! | TGGTTCGGTGGAGGTGTACG+AGG | - | chr3_3:78925609-78925628 | Msa0475620:CDS | 60.0% |
!! | GACACCAATGCTGGTGGTGG+TGG | - | chr3_3:78927578-78927597 | Msa0475620:CDS | 60.0% |
GGTGGGTCATGAGTGGAAGG+TGG | - | chr3_3:78927870-78927889 | Msa0475620:five_prime_UTR | 60.0% | |
!! | TGGTGGTGGTGGTTCGGTGG+AGG | - | chr3_3:78925600-78925619 | Msa0475620:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 78925181 | 78928101 | 78925181 | ID=Msa0475620;Name=Msa0475620 |
chr3_3 | mRNA | 78925181 | 78928101 | 78925181 | ID=Msa0475620-mRNA-1;Parent=Msa0475620;Name=Msa0475620-mRNA-1;_AED=0.04;_eAED=0.04;_QI=342|1|1|1|1|1|6|419|362 |
chr3_3 | exon | 78925181 | 78925854 | 78925181 | ID=Msa0475620-mRNA-1:exon:21359;Parent=Msa0475620-mRNA-1 |
chr3_3 | exon | 78926181 | 78926305 | 78926181 | ID=Msa0475620-mRNA-1:exon:21358;Parent=Msa0475620-mRNA-1 |
chr3_3 | exon | 78926446 | 78926650 | 78926446 | ID=Msa0475620-mRNA-1:exon:21357;Parent=Msa0475620-mRNA-1 |
chr3_3 | exon | 78926752 | 78926850 | 78926752 | ID=Msa0475620-mRNA-1:exon:21356;Parent=Msa0475620-mRNA-1 |
chr3_3 | exon | 78926942 | 78927028 | 78926942 | ID=Msa0475620-mRNA-1:exon:21355;Parent=Msa0475620-mRNA-1 |
chr3_3 | exon | 78927442 | 78928101 | 78927442 | ID=Msa0475620-mRNA-1:exon:21354;Parent=Msa0475620-mRNA-1 |
chr3_3 | five_prime_UTR | 78927760 | 78928101 | 78927760 | ID=Msa0475620-mRNA-1:five_prime_utr;Parent=Msa0475620-mRNA-1 |
chr3_3 | CDS | 78927442 | 78927759 | 78927442 | ID=Msa0475620-mRNA-1:cds;Parent=Msa0475620-mRNA-1 |
chr3_3 | CDS | 78926942 | 78927028 | 78926942 | ID=Msa0475620-mRNA-1:cds;Parent=Msa0475620-mRNA-1 |
chr3_3 | CDS | 78926752 | 78926850 | 78926752 | ID=Msa0475620-mRNA-1:cds;Parent=Msa0475620-mRNA-1 |
chr3_3 | CDS | 78926446 | 78926650 | 78926446 | ID=Msa0475620-mRNA-1:cds;Parent=Msa0475620-mRNA-1 |
chr3_3 | CDS | 78926181 | 78926305 | 78926181 | ID=Msa0475620-mRNA-1:cds;Parent=Msa0475620-mRNA-1 |
chr3_3 | CDS | 78925600 | 78925854 | 78925600 | ID=Msa0475620-mRNA-1:cds;Parent=Msa0475620-mRNA-1 |
chr3_3 | three_prime_UTR | 78925181 | 78925599 | 78925181 | ID=Msa0475620-mRNA-1:three_prime_utr;Parent=Msa0475620-mRNA-1 |
Gene Sequence |
Protein sequence |