AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1270910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1270910 MtrunA17_Chr8g0334541 80.263 304 32 5 5 307 3 279 1.16e-162 454
Msa1270910 MtrunA17_Chr8g0350621 48.872 266 105 8 1 258 1 243 1.27e-71 222
Msa1270910 MtrunA17_Chr7g0244971 44.218 294 138 7 4 290 12 286 5.21e-64 203
Msa1270910 MtrunA17_Chr7g0244981 40.541 296 136 8 4 290 11 275 1.28e-61 197
Msa1270910 MtrunA17_Chr2g0315371 40.444 225 98 7 9 205 18 234 4.54e-44 152
Msa1270910 MtrunA17_Chr2g0315381 39.442 251 105 9 2 214 10 251 7.17e-39 139
Msa1270910 MtrunA17_Chr8g0350631 48.571 175 58 5 133 305 5 149 5.71e-38 132
Msa1270910 MtrunA17_Chr2g0315361 40.417 240 101 8 6 210 14 246 2.18e-37 135
Msa1270910 MtrunA17_Chr3g0128671 45.833 168 78 6 13 171 23 186 1.67e-33 125
Msa1270910 MtrunA17_Chr5g0428351 40.606 165 85 3 8 172 92 243 1.85e-32 122
Msa1270910 MtrunA17_Chr7g0275531 37.500 176 95 5 4 171 9 177 5.22e-27 107
Msa1270910 MtrunA17_Chr8g0350641 45.588 136 62 4 6 132 7 139 2.14e-25 99.0
Msa1270910 MtrunA17_Chr3g0126391 30.392 204 111 4 1 178 1 199 7.05e-23 96.7
Msa1270910 MtrunA17_Chr8g0387981 31.771 192 104 4 8 178 13 198 1.14e-21 94.0
Msa1270910 MtrunA17_Chr8g0347251 47.674 86 38 1 93 171 110 195 7.54e-20 88.6
Msa1270910 MtrunA17_Chr7g0224801 54.237 59 24 1 112 170 93 148 9.58e-15 70.9
Msa1270910 MtrunA17_Chr8g0383351 47.458 59 28 1 112 170 160 215 9.57e-14 69.3
Msa1270910 MtrunA17_Chr7g0238921 56.897 58 22 1 112 169 124 178 4.32e-13 68.6
Msa1270910 MtrunA17_Chr3g0129361 47.458 59 28 1 112 170 144 199 4.52e-13 67.4
Msa1270910 MtrunA17_Chr7g0248721 52.308 65 25 3 112 174 141 201 9.03e-13 66.6
Msa1270910 MtrunA17_Chr5g0431811 34.058 138 75 4 110 244 670 794 1.51e-12 68.2
Msa1270910 MtrunA17_Chr5g0418781 50.000 58 26 1 112 169 124 178 2.02e-12 66.2
Msa1270910 MtrunA17_Chr8g0335811 50.000 58 26 1 112 169 154 208 2.65e-12 65.1
Msa1270910 MtrunA17_Chr4g0051881 51.724 58 25 1 112 169 178 232 2.79e-12 66.6
Msa1270910 MtrunA17_Chr5g0443131 50.000 58 26 1 112 169 157 211 2.87e-12 66.2
Msa1270910 MtrunA17_Chr8g0348311 43.590 78 40 2 95 170 136 211 3.03e-12 66.2
Msa1270910 MtrunA17_Chr8g0386241 36.782 87 50 2 84 170 77 158 8.03e-12 63.2
Msa1270910 MtrunA17_Chr1g0194481 47.458 59 28 1 112 170 158 213 2.30e-11 63.5
Msa1270910 MtrunA17_Chr2g0294231 47.458 59 28 1 112 170 203 258 3.16e-11 63.5
Msa1270910 MtrunA17_Chr2g0315401 52.542 59 27 1 140 198 19 76 4.53e-11 60.1
Msa1270910 MtrunA17_Chr7g0270191 47.458 59 28 1 112 170 145 200 7.08e-11 62.0
Msa1270910 MtrunA17_Chr4g0068541 44.828 58 29 1 112 169 208 262 7.19e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1270910 AT3G56400.1 39.227 181 86 6 6 172 10 180 2.38e-33 124
Msa1270910 AT2G46400.1 34.896 192 113 4 9 200 6 185 2.41e-26 105
Msa1270910 AT1G66550.1 32.039 206 110 6 6 203 8 191 7.56e-26 103
Msa1270910 AT1G66550.2 31.579 209 102 5 6 203 8 186 6.39e-25 100
Msa1270910 AT1G66600.1 33.333 195 109 4 6 199 8 182 8.00e-25 100
Msa1270910 AT5G22570.1 32.178 202 117 5 5 197 8 198 1.10e-24 101
Msa1270910 AT1G66560.1 35.533 197 100 7 7 199 9 182 3.09e-24 99.0
Msa1270910 AT4G11070.1 30.583 206 98 4 3 173 7 202 2.35e-22 95.5
Msa1270910 AT2G40750.1 29.915 234 128 6 6 207 14 243 1.48e-21 93.6
Msa1270910 AT5G01900.1 35.838 173 98 5 4 171 5 169 5.56e-21 90.5
Msa1270910 AT2G40740.1 34.591 159 57 4 89 234 137 261 7.86e-20 87.8
Msa1270910 AT2G40740.3 34.591 159 57 4 89 234 146 270 1.20e-19 87.8
Msa1270910 AT4G11070.2 31.351 185 92 3 3 173 7 170 1.37e-19 87.0
Msa1270910 AT5G24110.1 31.461 178 105 4 4 177 14 178 2.13e-19 87.0
Msa1270910 AT1G80590.1 31.928 166 84 4 6 171 8 144 8.90e-19 84.0
Msa1270910 AT4G23810.1 46.591 88 40 1 93 173 132 219 1.91e-18 84.7
Msa1270910 AT1G64000.1 49.231 65 28 2 112 174 114 175 8.96e-14 69.3
Msa1270910 AT2G46130.1 49.231 65 28 2 112 174 30 91 1.25e-13 66.6
Msa1270910 AT5G45260.1 51.515 66 30 1 106 169 1200 1265 1.75e-13 71.6
Msa1270910 AT5G41570.1 47.692 65 29 2 112 174 98 159 6.95e-13 66.2
Msa1270910 AT1G69310.4 50.000 58 26 1 112 169 147 201 8.13e-13 68.2
Msa1270910 AT1G69310.2 50.000 58 26 1 112 169 147 201 8.13e-13 68.2
Msa1270910 AT1G69310.1 50.000 58 26 1 112 169 147 201 8.13e-13 68.2
Msa1270910 AT5G49520.1 50.847 59 26 1 112 170 221 276 1.22e-12 68.2
Msa1270910 AT2G44745.1 50.000 58 26 1 112 169 145 199 1.84e-12 65.9
Msa1270910 AT4G39410.1 42.500 80 35 3 96 169 203 277 1.89e-12 67.0
Msa1270910 AT4G18170.1 41.667 96 49 3 76 169 136 226 4.37e-12 66.2
Msa1270910 AT1G29860.1 33.099 142 81 4 112 247 136 269 4.60e-12 65.9
Msa1270910 AT5G13080.1 49.153 59 27 1 112 170 67 122 7.42e-12 62.8
Msa1270910 AT4G01250.1 31.061 132 88 2 38 169 55 183 1.62e-11 64.3
Msa1270910 AT5G46350.1 48.276 58 27 1 112 169 183 237 2.39e-11 63.9
Msa1270910 AT3G01970.1 47.458 59 28 1 112 170 65 120 6.71e-11 60.1

Find 76 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATACACACCTTGAGTATT+TGG 0.203884 8_3:-4263739 None:intergenic
AAAACGAGTAACCTCATTAT+TGG 0.242421 8_3:+4264490 Msa1270910:three_prime_UTR
GAAATAGAGTTATCTAAAAT+TGG 0.244498 8_3:-4264260 None:intergenic
TGATGTCGACGATGATAAAA+AGG 0.250505 8_3:-4264135 None:intergenic
ACAAGATGTTGTGCAAATAA+TGG 0.269160 8_3:-4263169 None:intergenic
AAGTGAGAGAGTTGAAAATA+TGG 0.295847 8_3:+4263042 Msa1270910:exon
TTCAATTCTCTGCACTTGTT+TGG 0.311204 8_3:-4263952 None:intergenic
CAAGATGTTGTGCAAATAAT+GGG 0.321057 8_3:-4263168 None:intergenic
CTCATGTACAATATACAAAA+TGG 0.346875 8_3:-4264456 None:intergenic
CAAGGAGAACTCACCTTCCT+TGG 0.368416 8_3:+4264214 Msa1270910:CDS
TTTGATGATGTTTGTTCAAA+AGG 0.368943 8_3:-4263228 None:intergenic
ACAAGTGTGGTGGCCGTAAT+AGG 0.383562 8_3:-4264000 None:intergenic
ACCTTGAGTATTTGGAATTG+AGG 0.393271 8_3:-4263731 None:intergenic
GAGTTATCTAAAATTGGTTC+AGG 0.405651 8_3:-4264254 None:intergenic
TATAATTGAAAGCCATGAAA+AGG 0.416194 8_3:-4264410 None:intergenic
CAATCTTGTTCGGTTGGAGT+TGG 0.418906 8_3:-4264110 None:intergenic
AAACGAGTAACCTCATTATT+GGG 0.421058 8_3:+4264491 Msa1270910:three_prime_UTR
CAACAGATGATGGGCATGAA+TGG 0.421200 8_3:+4263685 Msa1270910:CDS
TTGTATAAGACCACCTATTA+CGG 0.432341 8_3:+4263987 Msa1270910:CDS
GTTGTTAAAGCTAAGCAATA+TGG 0.446307 8_3:-4264081 None:intergenic
AACACACATACAAGAGCATT+AGG 0.447595 8_3:+4262923 Msa1270910:five_prime_UTR
GGGCATGAATGGAGAAAGTA+TGG 0.453906 8_3:+4263696 Msa1270910:CDS
GCATTAGGAAGATGGAAGGA+AGG 0.455060 8_3:+4262938 Msa1270910:five_prime_UTR
TCAGAAAGACCAACAGATGA+TGG 0.460980 8_3:+4263675 Msa1270910:CDS
AATCTTGTTCGGTTGGAGTT+GGG 0.465300 8_3:-4264109 None:intergenic
CAAAATGGCCGGACATGTAA+AGG 0.471506 8_3:-4264441 None:intergenic
CACTTGAATCTGATGATCAC+AGG 0.481025 8_3:+4264321 Msa1270910:CDS
GTAATATAATGATGAGGTAA+TGG 0.481081 8_3:+4264535 Msa1270910:three_prime_UTR
TTTGAACAAACATCATCAAA+GGG 0.495098 8_3:+4263231 Msa1270910:CDS
TTTAACTATTAAATCTGAAG+AGG 0.496351 8_3:+4263267 Msa1270910:CDS
CATTCATGCCCATCATCTGT+TGG 0.504398 8_3:-4263684 None:intergenic
TGATAGAGATGAGGCAATGA+AGG 0.505201 8_3:+4263066 Msa1270910:CDS
AAGGGACAATCTTGTTCGGT+TGG 0.505479 8_3:-4264116 None:intergenic
AGTATTATCATGAGGAGAAG+TGG 0.509303 8_3:-4264051 None:intergenic
GTAGATAACCTTTACATGTC+CGG 0.510188 8_3:+4264433 Msa1270910:exon
ATAATTGAAAGCCATGAAAA+GGG 0.510799 8_3:-4264409 None:intergenic
GATATGATGATAATATTGTA+TGG 0.516217 8_3:+4264344 Msa1270910:CDS
CATTAGGAAGATGGAAGGAA+GGG 0.523179 8_3:+4262939 Msa1270910:five_prime_UTR
ATACAAGAGCATTAGGAAGA+TGG 0.532214 8_3:+4262930 Msa1270910:five_prime_UTR
CTAGAGGATCTCACAAAAGA+AGG 0.538260 8_3:+4263329 Msa1270910:CDS
GATGTTTGTTCAAAAGGAAG+AGG 0.548943 8_3:-4263222 None:intergenic
GTGAGATCCTCTAGCACCAC+GGG 0.549156 8_3:-4263320 None:intergenic
ATATATGCAGGGACTACTAC+AGG 0.552760 8_3:+4263895 Msa1270910:intron
TAGATAACTCTATTTCTACA+AGG 0.554534 8_3:+4264267 Msa1270910:CDS
TAATAGGTGGTCTTATACAA+GGG 0.559513 8_3:-4263984 None:intergenic
TCCTCAATTCCAAATACTCA+AGG 0.566315 8_3:+4263730 Msa1270910:CDS
GTATTATCATGAGGAGAAGT+GGG 0.567061 8_3:-4264050 None:intergenic
TTGTTCGGTTGGAGTTGGGA+AGG 0.567594 8_3:-4264105 None:intergenic
CAGAAAGACCAACAGATGAT+GGG 0.573763 8_3:+4263676 Msa1270910:CDS
ATGTTTGTTCAAAAGGAAGA+GGG 0.576811 8_3:-4263221 None:intergenic
GTAATAGGTGGTCTTATACA+AGG 0.578341 8_3:-4263985 None:intergenic
AGTTCCACCCGTGGTGCTAG+AGG 0.580528 8_3:+4263313 Msa1270910:CDS
AGAGAGCAGGTATTCATCCA+AGG 0.581141 8_3:-4264231 None:intergenic
GAAAGCCATGAAAAGGGTGA+AGG 0.584427 8_3:-4264403 None:intergenic
CATGCATTGTCCCAATAATG+AGG 0.585488 8_3:-4264501 None:intergenic
AAGAGCATTAGGAAGATGGA+AGG 0.586002 8_3:+4262934 Msa1270910:five_prime_UTR
GACAATGCATGTGATGACTT+TGG 0.586647 8_3:+4264513 Msa1270910:three_prime_UTR
TGTACAATATACAAAATGGC+CGG 0.591384 8_3:-4264452 None:intergenic
GCAATATTCCACTGAATGTG+AGG 0.603090 8_3:-4264192 None:intergenic
AGCAGGTATTCATCCAAGGA+AGG 0.605278 8_3:-4264227 None:intergenic
ACATTCAGTGGAATATTGCA+AGG 0.616091 8_3:+4264196 Msa1270910:CDS
GTTAAAGCTAAGCAATATGG+AGG 0.618068 8_3:-4264078 None:intergenic
GAGGAAGTAGTATTATCATG+AGG 0.627255 8_3:-4264059 None:intergenic
AAATTGGTTCAGGAGAGAGC+AGG 0.628355 8_3:-4264244 None:intergenic
GCAATGAAGGAGCTTGTGAG+AGG 0.633274 8_3:+4263079 Msa1270910:CDS
CAATGAAGGAGCTTGTGAGA+GGG 0.635141 8_3:+4263080 Msa1270910:CDS
CTAATTTGTTACAAGTGTGG+TGG 0.636211 8_3:-4264010 None:intergenic
TGTGAGATCCTCTAGCACCA+CGG 0.642464 8_3:-4263321 None:intergenic
AGATCCTCTAGCACCACGGG+TGG 0.645633 8_3:-4263317 None:intergenic
AGTGTGGTGGCCGTAATAGG+TGG 0.645916 8_3:-4263997 None:intergenic
AAATATGGATGATAGAGATG+AGG 0.650081 8_3:+4263057 Msa1270910:exon
ACTTGAATCTGATGATCACA+GGG 0.651483 8_3:+4264322 Msa1270910:CDS
TGTCTAATTTGTTACAAGTG+TGG 0.656286 8_3:-4264013 None:intergenic
ACTTTGGTAATATAATGATG+AGG 0.668369 8_3:+4264529 Msa1270910:three_prime_UTR
TAGGTGGTCTTATACAAGGG+AGG 0.682870 8_3:-4263981 None:intergenic
TACAAGACTAGTTCCACCCG+TGG 0.693459 8_3:+4263304 Msa1270910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATTAATAATATAT+TGG - chr8_3:4263401-4263420 None:intergenic 0.0%
!! ATATTATTAATATATATATA+TGG + chr8_3:4263403-4263422 Msa1270910:intron 0.0%
!! TATATATATTAATAATATAT+TGG - chr8_3:4263401-4263420 None:intergenic 0.0%
!! ATATTATTAATATATATATA+TGG + chr8_3:4263403-4263422 Msa1270910:intron 0.0%
!! TATATATTAATTCAAATCAT+TGG - chr8_3:4263880-4263899 None:intergenic 10.0%
!! TATATATTAATTCAAATCAT+TGG - chr8_3:4263880-4263899 None:intergenic 10.0%
!! TATATATAGATGAATTAAGT+TGG - chr8_3:4263789-4263808 None:intergenic 15.0%
!! ATTTGAATTAATATATATGC+AGG + chr8_3:4263883-4263902 Msa1270910:intron 15.0%
!! TTTGAATTAATATATATGCA+GGG + chr8_3:4263884-4263903 Msa1270910:intron 15.0%
!! TATATATAGATGAATTAAGT+TGG - chr8_3:4263789-4263808 None:intergenic 15.0%
!! ATTTGAATTAATATATATGC+AGG + chr8_3:4263883-4263902 Msa1270910:intron 15.0%
!! TTTGAATTAATATATATGCA+GGG + chr8_3:4263884-4263903 Msa1270910:intron 15.0%
!! TTTAACTATTAAATCTGAAG+AGG + chr8_3:4263267-4263286 Msa1270910:CDS 20.0%
!! CAAATCATTGGATATATATT+AGG - chr8_3:4263868-4263887 None:intergenic 20.0%
!!! GAAATAGAGTTATCTAAAAT+TGG - chr8_3:4264263-4264282 None:intergenic 20.0%
!! GATATGATGATAATATTGTA+TGG + chr8_3:4264344-4264363 Msa1270910:CDS 20.0%
!! TTTAACTATTAAATCTGAAG+AGG + chr8_3:4263267-4263286 Msa1270910:CDS 20.0%
!! CAAATCATTGGATATATATT+AGG - chr8_3:4263868-4263887 None:intergenic 20.0%
!!! GAAATAGAGTTATCTAAAAT+TGG - chr8_3:4264263-4264282 None:intergenic 20.0%
!! GATATGATGATAATATTGTA+TGG + chr8_3:4264344-4264363 Msa1270910:CDS 20.0%
!!! TTTGATGATGTTTGTTCAAA+AGG - chr8_3:4263231-4263250 None:intergenic 25.0%
!! TTTTGAACAAACATCATCAA+AGG + chr8_3:4263230-4263249 Msa1270910:CDS 25.0%
! TTTGAACAAACATCATCAAA+GGG + chr8_3:4263231-4263250 Msa1270910:CDS 25.0%
!!! GTTTTTAAAGAGTGTTAACA+AGG - chr8_3:4263509-4263528 None:intergenic 25.0%
!! GAACATTTTCTATAGAATCA+TGG + chr8_3:4263557-4263576 Msa1270910:intron 25.0%
!! TAGAATCATGGTTAAGTTTT+TGG + chr8_3:4263569-4263588 Msa1270910:intron 25.0%
! ACAAACTGTGAAAAGTTATT+AGG - chr8_3:4263834-4263853 None:intergenic 25.0%
!!! TAGATAACTCTATTTCTACA+AGG + chr8_3:4264267-4264286 Msa1270910:CDS 25.0%
! ATAATTGAAAGCCATGAAAA+GGG - chr8_3:4264412-4264431 None:intergenic 25.0%
! TATAATTGAAAGCCATGAAA+AGG - chr8_3:4264413-4264432 None:intergenic 25.0%
! CTCATGTACAATATACAAAA+TGG - chr8_3:4264459-4264478 None:intergenic 25.0%
!! ACTTTGGTAATATAATGATG+AGG + chr8_3:4264529-4264548 Msa1270910:three_prime_UTR 25.0%
! GTAATATAATGATGAGGTAA+TGG + chr8_3:4264535-4264554 Msa1270910:three_prime_UTR 25.0%
!!! TTTGATGATGTTTGTTCAAA+AGG - chr8_3:4263231-4263250 None:intergenic 25.0%
!! TTTTGAACAAACATCATCAA+AGG + chr8_3:4263230-4263249 Msa1270910:CDS 25.0%
! TTTGAACAAACATCATCAAA+GGG + chr8_3:4263231-4263250 Msa1270910:CDS 25.0%
!!! GTTTTTAAAGAGTGTTAACA+AGG - chr8_3:4263509-4263528 None:intergenic 25.0%
!! GAACATTTTCTATAGAATCA+TGG + chr8_3:4263557-4263576 Msa1270910:intron 25.0%
!! TAGAATCATGGTTAAGTTTT+TGG + chr8_3:4263569-4263588 Msa1270910:intron 25.0%
! ACAAACTGTGAAAAGTTATT+AGG - chr8_3:4263834-4263853 None:intergenic 25.0%
!!! TAGATAACTCTATTTCTACA+AGG + chr8_3:4264267-4264286 Msa1270910:CDS 25.0%
! ATAATTGAAAGCCATGAAAA+GGG - chr8_3:4264412-4264431 None:intergenic 25.0%
! TATAATTGAAAGCCATGAAA+AGG - chr8_3:4264413-4264432 None:intergenic 25.0%
! CTCATGTACAATATACAAAA+TGG - chr8_3:4264459-4264478 None:intergenic 25.0%
!! ACTTTGGTAATATAATGATG+AGG + chr8_3:4264529-4264548 Msa1270910:three_prime_UTR 25.0%
! GTAATATAATGATGAGGTAA+TGG + chr8_3:4264535-4264554 Msa1270910:three_prime_UTR 25.0%
AAGTGAGAGAGTTGAAAATA+TGG + chr8_3:4263042-4263061 Msa1270910:exon 30.0%
AAATATGGATGATAGAGATG+AGG + chr8_3:4263057-4263076 Msa1270910:exon 30.0%
CAAGATGTTGTGCAAATAAT+GGG - chr8_3:4263171-4263190 None:intergenic 30.0%
ACAAGATGTTGTGCAAATAA+TGG - chr8_3:4263172-4263191 None:intergenic 30.0%
ATGTTTGTTCAAAAGGAAGA+GGG - chr8_3:4263224-4263243 None:intergenic 30.0%
AACATGAAATTCTCATTGTG+TGG + chr8_3:4263475-4263494 Msa1270910:intron 30.0%
ATATACACACCTTGAGTATT+TGG - chr8_3:4263742-4263761 None:intergenic 30.0%
!! TAACTTTTCACAGTTTGTTC+AGG + chr8_3:4263836-4263855 Msa1270910:intron 30.0%
!! TAATAGGTGGTCTTATACAA+GGG - chr8_3:4263987-4264006 None:intergenic 30.0%
TTGTATAAGACCACCTATTA+CGG + chr8_3:4263987-4264006 Msa1270910:CDS 30.0%
!! TGTCTAATTTGTTACAAGTG+TGG - chr8_3:4264016-4264035 None:intergenic 30.0%
GTTGTTAAAGCTAAGCAATA+TGG - chr8_3:4264084-4264103 None:intergenic 30.0%
TAAAAAGGGACAATCTTGTT+CGG - chr8_3:4264123-4264142 None:intergenic 30.0%
!! TTTTAATTCCTCACATTCAG+TGG + chr8_3:4264184-4264203 Msa1270910:CDS 30.0%
! GAGTTATCTAAAATTGGTTC+AGG - chr8_3:4264257-4264276 None:intergenic 30.0%
TGTACAATATACAAAATGGC+CGG - chr8_3:4264455-4264474 None:intergenic 30.0%
AAAACGAGTAACCTCATTAT+TGG + chr8_3:4264490-4264509 Msa1270910:three_prime_UTR 30.0%
AAACGAGTAACCTCATTATT+GGG + chr8_3:4264491-4264510 Msa1270910:three_prime_UTR 30.0%
AAGTGAGAGAGTTGAAAATA+TGG + chr8_3:4263042-4263061 Msa1270910:exon 30.0%
AAATATGGATGATAGAGATG+AGG + chr8_3:4263057-4263076 Msa1270910:exon 30.0%
CAAGATGTTGTGCAAATAAT+GGG - chr8_3:4263171-4263190 None:intergenic 30.0%
ACAAGATGTTGTGCAAATAA+TGG - chr8_3:4263172-4263191 None:intergenic 30.0%
ATGTTTGTTCAAAAGGAAGA+GGG - chr8_3:4263224-4263243 None:intergenic 30.0%
AACATGAAATTCTCATTGTG+TGG + chr8_3:4263475-4263494 Msa1270910:intron 30.0%
ATATACACACCTTGAGTATT+TGG - chr8_3:4263742-4263761 None:intergenic 30.0%
!! TAACTTTTCACAGTTTGTTC+AGG + chr8_3:4263836-4263855 Msa1270910:intron 30.0%
!! TAATAGGTGGTCTTATACAA+GGG - chr8_3:4263987-4264006 None:intergenic 30.0%
TTGTATAAGACCACCTATTA+CGG + chr8_3:4263987-4264006 Msa1270910:CDS 30.0%
!! TGTCTAATTTGTTACAAGTG+TGG - chr8_3:4264016-4264035 None:intergenic 30.0%
GTTGTTAAAGCTAAGCAATA+TGG - chr8_3:4264084-4264103 None:intergenic 30.0%
TAAAAAGGGACAATCTTGTT+CGG - chr8_3:4264123-4264142 None:intergenic 30.0%
!! TTTTAATTCCTCACATTCAG+TGG + chr8_3:4264184-4264203 Msa1270910:CDS 30.0%
! GAGTTATCTAAAATTGGTTC+AGG - chr8_3:4264257-4264276 None:intergenic 30.0%
TGTACAATATACAAAATGGC+CGG - chr8_3:4264455-4264474 None:intergenic 30.0%
AAAACGAGTAACCTCATTAT+TGG + chr8_3:4264490-4264509 Msa1270910:three_prime_UTR 30.0%
AAACGAGTAACCTCATTATT+GGG + chr8_3:4264491-4264510 Msa1270910:three_prime_UTR 30.0%
!! AACACACATACAAGAGCATT+AGG + chr8_3:4262923-4262942 Msa1270910:five_prime_UTR 35.0%
!! ATACAAGAGCATTAGGAAGA+TGG + chr8_3:4262930-4262949 Msa1270910:five_prime_UTR 35.0%
GATGTTTGTTCAAAAGGAAG+AGG - chr8_3:4263225-4263244 None:intergenic 35.0%
!! TCATGGTTAAGTTTTTGGAG+TGG + chr8_3:4263574-4263593 Msa1270910:intron 35.0%
AAAAACTACAGAAACGTGTG+AGG + chr8_3:4263647-4263666 Msa1270910:CDS 35.0%
TCCTCAATTCCAAATACTCA+AGG + chr8_3:4263730-4263749 Msa1270910:CDS 35.0%
! ACCTTGAGTATTTGGAATTG+AGG - chr8_3:4263734-4263753 None:intergenic 35.0%
TATTAGGAAACAGATCGATG+AGG - chr8_3:4263818-4263837 None:intergenic 35.0%
TTCAATTCTCTGCACTTGTT+TGG - chr8_3:4263955-4263974 None:intergenic 35.0%
!! GTAATAGGTGGTCTTATACA+AGG - chr8_3:4263988-4264007 None:intergenic 35.0%
!! CTAATTTGTTACAAGTGTGG+TGG - chr8_3:4264013-4264032 None:intergenic 35.0%
GTATTATCATGAGGAGAAGT+GGG - chr8_3:4264053-4264072 None:intergenic 35.0%
AGTATTATCATGAGGAGAAG+TGG - chr8_3:4264054-4264073 None:intergenic 35.0%
GAGGAAGTAGTATTATCATG+AGG - chr8_3:4264062-4264081 None:intergenic 35.0%
GTTAAAGCTAAGCAATATGG+AGG - chr8_3:4264081-4264100 None:intergenic 35.0%
GATGTCGACGATGATAAAAA+GGG - chr8_3:4264137-4264156 None:intergenic 35.0%
TGATGTCGACGATGATAAAA+AGG - chr8_3:4264138-4264157 None:intergenic 35.0%
ACATTCAGTGGAATATTGCA+AGG + chr8_3:4264196-4264215 Msa1270910:CDS 35.0%
ACTTGAATCTGATGATCACA+GGG + chr8_3:4264322-4264341 Msa1270910:CDS 35.0%
GTAGATAACCTTTACATGTC+CGG + chr8_3:4264433-4264452 Msa1270910:exon 35.0%
! TGAGGTAATGGTAACAGAAA+AGG + chr8_3:4264547-4264566 Msa1270910:three_prime_UTR 35.0%
!! AACACACATACAAGAGCATT+AGG + chr8_3:4262923-4262942 Msa1270910:five_prime_UTR 35.0%
!! ATACAAGAGCATTAGGAAGA+TGG + chr8_3:4262930-4262949 Msa1270910:five_prime_UTR 35.0%
GATGTTTGTTCAAAAGGAAG+AGG - chr8_3:4263225-4263244 None:intergenic 35.0%
!! TCATGGTTAAGTTTTTGGAG+TGG + chr8_3:4263574-4263593 Msa1270910:intron 35.0%
AAAAACTACAGAAACGTGTG+AGG + chr8_3:4263647-4263666 Msa1270910:CDS 35.0%
TCCTCAATTCCAAATACTCA+AGG + chr8_3:4263730-4263749 Msa1270910:CDS 35.0%
! ACCTTGAGTATTTGGAATTG+AGG - chr8_3:4263734-4263753 None:intergenic 35.0%
TATTAGGAAACAGATCGATG+AGG - chr8_3:4263818-4263837 None:intergenic 35.0%
TTCAATTCTCTGCACTTGTT+TGG - chr8_3:4263955-4263974 None:intergenic 35.0%
!! GTAATAGGTGGTCTTATACA+AGG - chr8_3:4263988-4264007 None:intergenic 35.0%
!! CTAATTTGTTACAAGTGTGG+TGG - chr8_3:4264013-4264032 None:intergenic 35.0%
GTATTATCATGAGGAGAAGT+GGG - chr8_3:4264053-4264072 None:intergenic 35.0%
AGTATTATCATGAGGAGAAG+TGG - chr8_3:4264054-4264073 None:intergenic 35.0%
GAGGAAGTAGTATTATCATG+AGG - chr8_3:4264062-4264081 None:intergenic 35.0%
GTTAAAGCTAAGCAATATGG+AGG - chr8_3:4264081-4264100 None:intergenic 35.0%
GATGTCGACGATGATAAAAA+GGG - chr8_3:4264137-4264156 None:intergenic 35.0%
TGATGTCGACGATGATAAAA+AGG - chr8_3:4264138-4264157 None:intergenic 35.0%
ACATTCAGTGGAATATTGCA+AGG + chr8_3:4264196-4264215 Msa1270910:CDS 35.0%
ACTTGAATCTGATGATCACA+GGG + chr8_3:4264322-4264341 Msa1270910:CDS 35.0%
GTAGATAACCTTTACATGTC+CGG + chr8_3:4264433-4264452 Msa1270910:exon 35.0%
!! AAGAGCATTAGGAAGATGGA+AGG + chr8_3:4262934-4262953 Msa1270910:five_prime_UTR 40.0%
CATTAGGAAGATGGAAGGAA+GGG + chr8_3:4262939-4262958 Msa1270910:five_prime_UTR 40.0%
TGATAGAGATGAGGCAATGA+AGG + chr8_3:4263066-4263085 Msa1270910:CDS 40.0%
CTAGAGGATCTCACAAAAGA+AGG + chr8_3:4263329-4263348 Msa1270910:CDS 40.0%
! AGTCATGTTGTTTGCTAGCT+AGG + chr8_3:4263529-4263548 Msa1270910:intron 40.0%
TCAGAAAGACCAACAGATGA+TGG + chr8_3:4263675-4263694 Msa1270910:CDS 40.0%
CAGAAAGACCAACAGATGAT+GGG + chr8_3:4263676-4263695 Msa1270910:CDS 40.0%
! TTTCACAGTTTGTTCAGGCT+AGG + chr8_3:4263841-4263860 Msa1270910:intron 40.0%
! TTCACAGTTTGTTCAGGCTA+GGG + chr8_3:4263842-4263861 Msa1270910:intron 40.0%
ATATATGCAGGGACTACTAC+AGG + chr8_3:4263895-4263914 Msa1270910:intron 40.0%
AATCTTGTTCGGTTGGAGTT+GGG - chr8_3:4264112-4264131 None:intergenic 40.0%
GCAATATTCCACTGAATGTG+AGG - chr8_3:4264195-4264214 None:intergenic 40.0%
CACTTGAATCTGATGATCAC+AGG + chr8_3:4264321-4264340 Msa1270910:CDS 40.0%
! GATTTCCTTCACCCTTTTCA+TGG + chr8_3:4264398-4264417 Msa1270910:CDS 40.0%
CATGCATTGTCCCAATAATG+AGG - chr8_3:4264504-4264523 None:intergenic 40.0%
GACAATGCATGTGATGACTT+TGG + chr8_3:4264513-4264532 Msa1270910:three_prime_UTR 40.0%
!! AAGAGCATTAGGAAGATGGA+AGG + chr8_3:4262934-4262953 Msa1270910:five_prime_UTR 40.0%
CATTAGGAAGATGGAAGGAA+GGG + chr8_3:4262939-4262958 Msa1270910:five_prime_UTR 40.0%
TGATAGAGATGAGGCAATGA+AGG + chr8_3:4263066-4263085 Msa1270910:CDS 40.0%
CTAGAGGATCTCACAAAAGA+AGG + chr8_3:4263329-4263348 Msa1270910:CDS 40.0%
! AGTCATGTTGTTTGCTAGCT+AGG + chr8_3:4263529-4263548 Msa1270910:intron 40.0%
TCAGAAAGACCAACAGATGA+TGG + chr8_3:4263675-4263694 Msa1270910:CDS 40.0%
CAGAAAGACCAACAGATGAT+GGG + chr8_3:4263676-4263695 Msa1270910:CDS 40.0%
! TTTCACAGTTTGTTCAGGCT+AGG + chr8_3:4263841-4263860 Msa1270910:intron 40.0%
! TTCACAGTTTGTTCAGGCTA+GGG + chr8_3:4263842-4263861 Msa1270910:intron 40.0%
ATATATGCAGGGACTACTAC+AGG + chr8_3:4263895-4263914 Msa1270910:intron 40.0%
AATCTTGTTCGGTTGGAGTT+GGG - chr8_3:4264112-4264131 None:intergenic 40.0%
GCAATATTCCACTGAATGTG+AGG - chr8_3:4264195-4264214 None:intergenic 40.0%
CACTTGAATCTGATGATCAC+AGG + chr8_3:4264321-4264340 Msa1270910:CDS 40.0%
! GATTTCCTTCACCCTTTTCA+TGG + chr8_3:4264398-4264417 Msa1270910:CDS 40.0%
CATGCATTGTCCCAATAATG+AGG - chr8_3:4264504-4264523 None:intergenic 40.0%
GACAATGCATGTGATGACTT+TGG + chr8_3:4264513-4264532 Msa1270910:three_prime_UTR 40.0%
GCATTAGGAAGATGGAAGGA+AGG + chr8_3:4262938-4262957 Msa1270910:five_prime_UTR 45.0%
CAATGAAGGAGCTTGTGAGA+GGG + chr8_3:4263080-4263099 Msa1270910:CDS 45.0%
CATTCATGCCCATCATCTGT+TGG - chr8_3:4263687-4263706 None:intergenic 45.0%
!! CAACAGATGATGGGCATGAA+TGG + chr8_3:4263685-4263704 Msa1270910:CDS 45.0%
GGGCATGAATGGAGAAAGTA+TGG + chr8_3:4263696-4263715 Msa1270910:CDS 45.0%
TAGGAAACAGATCGATGAGG+AGG - chr8_3:4263815-4263834 None:intergenic 45.0%
!! TAGGTGGTCTTATACAAGGG+AGG - chr8_3:4263984-4264003 None:intergenic 45.0%
CAATCTTGTTCGGTTGGAGT+TGG - chr8_3:4264113-4264132 None:intergenic 45.0%
AAGGGACAATCTTGTTCGGT+TGG - chr8_3:4264119-4264138 None:intergenic 45.0%
AGCAGGTATTCATCCAAGGA+AGG - chr8_3:4264230-4264249 None:intergenic 45.0%
AGAGAGCAGGTATTCATCCA+AGG - chr8_3:4264234-4264253 None:intergenic 45.0%
! AAATTGGTTCAGGAGAGAGC+AGG - chr8_3:4264247-4264266 None:intergenic 45.0%
GAAAGCCATGAAAAGGGTGA+AGG - chr8_3:4264406-4264425 None:intergenic 45.0%
CAAAATGGCCGGACATGTAA+AGG - chr8_3:4264444-4264463 None:intergenic 45.0%
GCATTAGGAAGATGGAAGGA+AGG + chr8_3:4262938-4262957 Msa1270910:five_prime_UTR 45.0%
CAATGAAGGAGCTTGTGAGA+GGG + chr8_3:4263080-4263099 Msa1270910:CDS 45.0%
CATTCATGCCCATCATCTGT+TGG - chr8_3:4263687-4263706 None:intergenic 45.0%
!! CAACAGATGATGGGCATGAA+TGG + chr8_3:4263685-4263704 Msa1270910:CDS 45.0%
GGGCATGAATGGAGAAAGTA+TGG + chr8_3:4263696-4263715 Msa1270910:CDS 45.0%
TAGGAAACAGATCGATGAGG+AGG - chr8_3:4263815-4263834 None:intergenic 45.0%
!! TAGGTGGTCTTATACAAGGG+AGG - chr8_3:4263984-4264003 None:intergenic 45.0%
CAATCTTGTTCGGTTGGAGT+TGG - chr8_3:4264113-4264132 None:intergenic 45.0%
AAGGGACAATCTTGTTCGGT+TGG - chr8_3:4264119-4264138 None:intergenic 45.0%
AGCAGGTATTCATCCAAGGA+AGG - chr8_3:4264230-4264249 None:intergenic 45.0%
AGAGAGCAGGTATTCATCCA+AGG - chr8_3:4264234-4264253 None:intergenic 45.0%
! AAATTGGTTCAGGAGAGAGC+AGG - chr8_3:4264247-4264266 None:intergenic 45.0%
GAAAGCCATGAAAAGGGTGA+AGG - chr8_3:4264406-4264425 None:intergenic 45.0%
CAAAATGGCCGGACATGTAA+AGG - chr8_3:4264444-4264463 None:intergenic 45.0%
GCAATGAAGGAGCTTGTGAG+AGG + chr8_3:4263079-4263098 Msa1270910:CDS 50.0%
! TACAAGACTAGTTCCACCCG+TGG + chr8_3:4263304-4263323 Msa1270910:CDS 50.0%
TGTGAGATCCTCTAGCACCA+CGG - chr8_3:4263324-4263343 None:intergenic 50.0%
ACAAGTGTGGTGGCCGTAAT+AGG - chr8_3:4264003-4264022 None:intergenic 50.0%
TTGTTCGGTTGGAGTTGGGA+AGG - chr8_3:4264108-4264127 None:intergenic 50.0%
CAAGGAGAACTCACCTTCCT+TGG + chr8_3:4264214-4264233 Msa1270910:CDS 50.0%
GCAATGAAGGAGCTTGTGAG+AGG + chr8_3:4263079-4263098 Msa1270910:CDS 50.0%
! TACAAGACTAGTTCCACCCG+TGG + chr8_3:4263304-4263323 Msa1270910:CDS 50.0%
TGTGAGATCCTCTAGCACCA+CGG - chr8_3:4263324-4263343 None:intergenic 50.0%
ACAAGTGTGGTGGCCGTAAT+AGG - chr8_3:4264003-4264022 None:intergenic 50.0%
TTGTTCGGTTGGAGTTGGGA+AGG - chr8_3:4264108-4264127 None:intergenic 50.0%
CAAGGAGAACTCACCTTCCT+TGG + chr8_3:4264214-4264233 Msa1270910:CDS 50.0%
GTGAGATCCTCTAGCACCAC+GGG - chr8_3:4263323-4263342 None:intergenic 55.0%
AGTGTGGTGGCCGTAATAGG+TGG - chr8_3:4264000-4264019 None:intergenic 55.0%
GTGAGATCCTCTAGCACCAC+GGG - chr8_3:4263323-4263342 None:intergenic 55.0%
AGTGTGGTGGCCGTAATAGG+TGG - chr8_3:4264000-4264019 None:intergenic 55.0%
! AGTTCCACCCGTGGTGCTAG+AGG + chr8_3:4263313-4263332 Msa1270910:CDS 60.0%
AGATCCTCTAGCACCACGGG+TGG - chr8_3:4263320-4263339 None:intergenic 60.0%
! AGTTCCACCCGTGGTGCTAG+AGG + chr8_3:4263313-4263332 Msa1270910:CDS 60.0%
AGATCCTCTAGCACCACGGG+TGG - chr8_3:4263320-4263339 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 4262900 4264568 4262900 ID=Msa1270910;Name=Msa1270910
chr8_3 mRNA 4262900 4264568 4262900 ID=Msa1270910-mRNA-1;Parent=Msa1270910;Name=Msa1270910-mRNA-1;_AED=0.26;_eAED=0.26;_QI=161|1|1|1|1|1|3|135|307
chr8_3 exon 4262900 4263350 4262900 ID=Msa1270910-mRNA-1:exon:1413;Parent=Msa1270910-mRNA-1
chr8_3 exon 4263647 4263751 4263647 ID=Msa1270910-mRNA-1:exon:1414;Parent=Msa1270910-mRNA-1
chr8_3 exon 4263905 4264568 4263905 ID=Msa1270910-mRNA-1:exon:1415;Parent=Msa1270910-mRNA-1
chr8_3 five_prime_UTR 4262900 4263060 4262900 ID=Msa1270910-mRNA-1:five_prime_utr;Parent=Msa1270910-mRNA-1
chr8_3 CDS 4263061 4263350 4263061 ID=Msa1270910-mRNA-1:cds;Parent=Msa1270910-mRNA-1
chr8_3 CDS 4263647 4263751 4263647 ID=Msa1270910-mRNA-1:cds;Parent=Msa1270910-mRNA-1
chr8_3 CDS 4263905 4264433 4263905 ID=Msa1270910-mRNA-1:cds;Parent=Msa1270910-mRNA-1
chr8_3 three_prime_UTR 4264434 4264568 4264434 ID=Msa1270910-mRNA-1:three_prime_utr;Parent=Msa1270910-mRNA-1
Gene Sequence

>Msa1270910

ATGGATGATAGAGATGAGGCAATGAAGGAGCTTGTGAGAGGGCGTGAGTTAGCTAAGCAGCTTGAACAACATCTTAGTAACAACATTAATGATAAATTATTAGCAAGCCCATTATTTGCACAACATCTTGTAAGCAACGTTGTCAACTCATTTAGTAACACCCTCTTCCTTTTGAACAAACATCATCAAAGGGAACAAAACTTTTCTTTAACTATTAAATCTGAAGAGGAATCTCAAGATAGTTACAAGACTAGTTCCACCCGTGGTGCTAGAGGATCTCACAAAAGAAGAAAAACTACAGAAACGTGTGAGGAAGTGTCAGAAAGACCAACAGATGATGGGCATGAATGGAGAAAGTATGGTCAAAAAACAATCCTCAATTCCAAATACTCAAGGGACTACTACAGGTGTACTCACAAGTTTAATCAAAGATGCAAAGCAACCAAACAAGTGCAGAGAATTGAAGAGAAGCCTCCCTTGTATAAGACCACCTATTACGGCCACCACACTTGTAACAAATTAGACAGTATCATATTTGAACCCACTTCTCCTCATGATAATACTACTTCCTCCATATTGCTTAGCTTTAACAACACCTTCCCAACTCCAACCGAACAAGATTGTCCCTTTTTATCATCGTCGACATCATCATCATCATCATCATCATCTTCGTCTTTTAATTCCTCACATTCAGTGGAATATTGCAAGGAGAACTCACCTTCCTTGGATGAATACCTGCTCTCTCCTGAACCAATTTTAGATAACTCTATTTCTACAAGGCATGTTCGTAGTACTCTATCATCATCAACTACACTTGAATCTGATGATCACAGGGATATGATGATAATATTGTATGGTCTCTTGTATGATTCTGATGAACTTGATACTGATTTCCTTCACCCTTTTCATGGCTTTCAATTATAG

Protein sequence

>Msa1270910

MDDRDEAMKELVRGRELAKQLEQHLSNNINDKLLASPLFAQHLVSNVVNSFSNTLFLLNKHHQREQNFSLTIKSEEESQDSYKTSSTRGARGSHKRRKTTETCEEVSERPTDDGHEWRKYGQKTILNSKYSRDYYRCTHKFNQRCKATKQVQRIEEKPPLYKTTYYGHHTCNKLDSIIFEPTSPHDNTTSSILLSFNNTFPTPTEQDCPFLSSSTSSSSSSSSSSFNSSHSVEYCKENSPSLDEYLLSPEPILDNSISTRHVRSTLSSSTTLESDDHRDMMIILYGLLYDSDELDTDFLHPFHGFQL*