AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1369340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369340 MtrunA17_Chr8g0334541 80.263 304 32 5 5 307 3 279 2.10e-163 456
Msa1369340 MtrunA17_Chr8g0350621 48.496 266 106 8 1 258 1 243 7.50e-71 220
Msa1369340 MtrunA17_Chr7g0244971 44.257 296 139 7 4 292 12 288 1.91e-65 207
Msa1369340 MtrunA17_Chr7g0244981 40.604 298 137 8 4 292 11 277 7.57e-63 200
Msa1369340 MtrunA17_Chr2g0315371 40.000 225 99 7 9 205 18 234 3.01e-43 150
Msa1369340 MtrunA17_Chr8g0350631 49.143 175 57 5 133 305 5 149 3.28e-39 135
Msa1369340 MtrunA17_Chr2g0315381 39.044 251 106 9 2 214 10 251 4.53e-38 137
Msa1369340 MtrunA17_Chr2g0315361 39.918 243 104 8 6 213 14 249 1.14e-36 133
Msa1369340 MtrunA17_Chr3g0128671 45.238 168 79 6 13 171 23 186 1.08e-32 122
Msa1369340 MtrunA17_Chr5g0428351 40.606 165 85 3 8 172 92 243 3.52e-32 121
Msa1369340 MtrunA17_Chr7g0275531 36.464 181 90 4 4 171 9 177 1.94e-27 108
Msa1369340 MtrunA17_Chr8g0350641 44.853 136 63 4 6 132 7 139 1.55e-24 96.7
Msa1369340 MtrunA17_Chr3g0126391 30.392 204 111 4 1 178 1 199 1.13e-22 96.3
Msa1369340 MtrunA17_Chr8g0387981 31.771 192 104 4 8 178 13 198 3.41e-22 95.1
Msa1369340 MtrunA17_Chr8g0347251 32.065 184 104 4 8 171 13 195 7.54e-20 88.6
Msa1369340 MtrunA17_Chr7g0224801 54.237 59 24 1 112 170 93 148 1.06e-14 70.9
Msa1369340 MtrunA17_Chr8g0383351 47.458 59 28 1 112 170 160 215 9.39e-14 69.7
Msa1369340 MtrunA17_Chr7g0248721 39.252 107 50 5 75 174 103 201 3.98e-13 67.4
Msa1369340 MtrunA17_Chr7g0238921 56.897 58 22 1 112 169 124 178 4.01e-13 68.9
Msa1369340 MtrunA17_Chr3g0129361 47.458 59 28 1 112 170 144 199 4.48e-13 67.4
Msa1369340 MtrunA17_Chr5g0431811 33.566 143 79 4 110 249 670 799 1.48e-12 68.2
Msa1369340 MtrunA17_Chr5g0418781 50.000 58 26 1 112 169 124 178 2.04e-12 66.2
Msa1369340 MtrunA17_Chr4g0051881 51.724 58 25 1 112 169 178 232 2.66e-12 66.6
Msa1369340 MtrunA17_Chr8g0335811 50.000 58 26 1 112 169 154 208 2.68e-12 65.1
Msa1369340 MtrunA17_Chr8g0348311 43.590 78 40 2 95 170 136 211 3.24e-12 66.2
Msa1369340 MtrunA17_Chr5g0443131 50.000 58 26 1 112 169 157 211 3.33e-12 65.9
Msa1369340 MtrunA17_Chr8g0386241 37.209 86 49 2 84 169 77 157 1.70e-11 62.0
Msa1369340 MtrunA17_Chr1g0194481 47.458 59 28 1 112 170 158 213 2.32e-11 63.5
Msa1369340 MtrunA17_Chr2g0294231 47.458 59 28 1 112 170 203 258 3.16e-11 63.5
Msa1369340 MtrunA17_Chr2g0315401 52.542 59 27 1 140 198 19 76 4.49e-11 60.1
Msa1369340 MtrunA17_Chr4g0068541 44.828 58 29 1 112 169 208 262 7.33e-11 62.4
Msa1369340 MtrunA17_Chr7g0270191 47.458 59 28 1 112 170 145 200 7.56e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369340 AT3G56400.1 39.227 181 86 6 6 172 10 180 7.69e-34 125
Msa1369340 AT2G46400.1 34.896 192 113 4 9 200 6 185 4.23e-26 105
Msa1369340 AT1G66550.1 32.039 206 110 6 6 203 8 191 1.12e-25 103
Msa1369340 AT1G66550.2 31.500 200 114 4 6 203 8 186 1.22e-24 100
Msa1369340 AT5G22570.1 32.178 202 117 5 5 197 8 198 1.65e-24 100
Msa1369340 AT1G66600.1 33.333 195 109 4 6 199 8 182 1.73e-24 99.8
Msa1369340 AT1G66560.1 36.041 197 99 8 7 199 9 182 3.68e-24 99.0
Msa1369340 AT4G11070.1 30.583 206 98 4 3 173 7 202 4.46e-22 94.7
Msa1369340 AT2G40750.1 29.915 234 128 6 6 207 14 243 2.82e-21 92.8
Msa1369340 AT5G01900.1 36.111 180 88 7 4 171 5 169 6.87e-21 90.5
Msa1369340 AT2G40740.1 34.591 159 57 4 89 234 137 261 6.63e-20 88.2
Msa1369340 AT2G40740.3 34.591 159 57 4 89 234 146 270 1.05e-19 87.8
Msa1369340 AT4G11070.2 31.351 185 92 3 3 173 7 170 2.31e-19 86.7
Msa1369340 AT5G24110.1 31.461 178 105 4 4 177 14 178 3.71e-19 86.3
Msa1369340 AT1G80590.1 32.530 166 83 4 6 171 8 144 1.16e-18 83.6
Msa1369340 AT4G23810.1 46.591 88 40 1 93 173 132 219 1.88e-18 84.7
Msa1369340 AT1G64000.1 49.231 65 28 2 112 174 114 175 9.23e-14 69.3
Msa1369340 AT2G46130.1 49.231 65 28 2 112 174 30 91 1.23e-13 66.6
Msa1369340 AT5G45260.1 51.515 66 30 1 106 169 1200 1265 1.67e-13 71.6
Msa1369340 AT5G41570.1 47.692 65 29 2 112 174 98 159 7.02e-13 66.2
Msa1369340 AT1G69310.4 50.000 58 26 1 112 169 147 201 8.69e-13 67.8
Msa1369340 AT1G69310.2 50.000 58 26 1 112 169 147 201 8.69e-13 67.8
Msa1369340 AT1G69310.1 50.000 58 26 1 112 169 147 201 8.69e-13 67.8
Msa1369340 AT4G39410.1 38.202 89 50 2 81 169 194 277 9.74e-13 67.8
Msa1369340 AT5G49520.1 50.847 59 26 1 112 170 221 276 1.25e-12 68.2
Msa1369340 AT2G44745.1 50.000 58 26 1 112 169 145 199 1.95e-12 65.9
Msa1369340 AT1G29860.1 50.000 58 26 1 112 169 136 190 4.60e-12 65.9
Msa1369340 AT4G18170.1 50.000 58 26 1 112 169 172 226 6.13e-12 65.9
Msa1369340 AT5G13080.1 49.153 59 27 1 112 170 67 122 7.64e-12 62.8
Msa1369340 AT5G46350.1 48.276 58 27 1 112 169 183 237 2.44e-11 63.9
Msa1369340 AT4G01250.1 31.061 132 88 2 38 169 55 183 4.46e-11 63.2
Msa1369340 AT3G01970.1 47.458 59 28 1 112 170 65 120 6.98e-11 60.1

Find 73 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATACACACCTTGAGTATT+TGG 0.203884 tig0018782:+2037 None:intergenic
GAAATAGAGTTATCTAAAAT+TGG 0.244498 tig0018782:+1521 None:intergenic
TGATGTCGACGATGATAAAA+AGG 0.250505 tig0018782:+1646 None:intergenic
ATATTGAGTAACCTCATTAT+TGG 0.264098 tig0018782:-1236 None:intergenic
ACAAGATGTTGTGCAAATAA+TGG 0.269160 tig0018782:+2633 None:intergenic
AAGTGAGAGAGTTGAAAATA+TGG 0.295847 tig0018782:-2760 Msa1369340:exon
TTCAATTCTCTGCACTTGTT+TGG 0.311204 tig0018782:+1829 None:intergenic
CAAGATGTTGTGCAAATAAT+GGG 0.321057 tig0018782:+2634 None:intergenic
TATTGAGTAACCTCATTATT+GGG 0.335548 tig0018782:-1235 None:intergenic
AGAGAATAATAAAACGAGTA+TGG 0.342351 tig0018782:-1301 Msa1369340:three_prime_UTR
CTCATGTACAATATACAAAA+TGG 0.346875 tig0018782:+1325 None:intergenic
CAAGGAGAACTCACCTTCCT+TGG 0.368416 tig0018782:-1567 Msa1369340:CDS
TTTGATGATGTTTGTTCAAA+AGG 0.368943 tig0018782:+2574 None:intergenic
ACAAGTGTGGTGGCCGTAAT+AGG 0.383562 tig0018782:+1781 None:intergenic
ACCTTGAGTATTTGGAATTG+AGG 0.393271 tig0018782:+2045 None:intergenic
GAGTTATCTAAAATTGGTTC+AGG 0.405651 tig0018782:+1527 None:intergenic
TATAATTGAAAGCCATGAAA+AGG 0.416194 tig0018782:+1371 None:intergenic
CAATCTTGTTCGGTTGGAGT+TGG 0.418906 tig0018782:+1671 None:intergenic
CAACAGATGATGGGCATGAA+TGG 0.421200 tig0018782:-2091 Msa1369340:CDS
TTGTATAAGACCACCTATTA+CGG 0.432341 tig0018782:-1794 Msa1369340:CDS
AACACACATACAAGAGCATT+AGG 0.440774 tig0018782:-2885 Msa1369340:five_prime_UTR
GTTGTTAAAGCTAAGCAATA+TGG 0.446307 tig0018782:+1700 None:intergenic
GGGCATGAATGGAGAAAGTA+TGG 0.453906 tig0018782:-2080 Msa1369340:CDS
GCATTAGGAAGATGGAAGGA+AGG 0.455060 tig0018782:-2870 Msa1369340:five_prime_UTR
TCAGAAAGACCAACAGATGA+TGG 0.460980 tig0018782:-2101 Msa1369340:CDS
AATCTTGTTCGGTTGGAGTT+GGG 0.465300 tig0018782:+1672 None:intergenic
CAAAATGGCCGGACATGTAA+AGG 0.471506 tig0018782:+1340 None:intergenic
CACTTGAATCTGATGATCAC+AGG 0.481025 tig0018782:-1460 Msa1369340:CDS
TTTGAACAAACATCATCAAA+GGG 0.495098 tig0018782:-2571 Msa1369340:CDS
TTTAACTATTAAATCTGAAG+AGG 0.496351 tig0018782:-2535 Msa1369340:CDS
CATTCATGCCCATCATCTGT+TGG 0.504398 tig0018782:+2092 None:intergenic
TGATAGAGATGAGGCAATGA+AGG 0.505201 tig0018782:-2736 Msa1369340:CDS
AAGGGACAATCTTGTTCGGT+TGG 0.505479 tig0018782:+1665 None:intergenic
AGTATTATCATGAGGAGAAG+TGG 0.509303 tig0018782:+1730 None:intergenic
GTAGATAACCTTTACATGTC+CGG 0.510188 tig0018782:-1348 Msa1369340:three_prime_UTR
ATAATTGAAAGCCATGAAAA+GGG 0.510799 tig0018782:+1372 None:intergenic
GATATGATGATAATATTGTA+TGG 0.516217 tig0018782:-1437 Msa1369340:CDS
CATTAGGAAGATGGAAGGAA+GGG 0.523179 tig0018782:-2869 Msa1369340:five_prime_UTR
ATACAAGAGCATTAGGAAGA+TGG 0.532214 tig0018782:-2878 Msa1369340:five_prime_UTR
CTAGAGGATCTCACAAAAGA+AGG 0.538260 tig0018782:-2473 Msa1369340:intron
GATGTTTGTTCAAAAGGAAG+AGG 0.548943 tig0018782:+2580 None:intergenic
ATATATGCAGGGACTACTAC+AGG 0.552760 tig0018782:-1886 Msa1369340:intron
TAGATAACTCTATTTCTACA+AGG 0.554534 tig0018782:-1514 Msa1369340:CDS
TAATAGGTGGTCTTATACAA+GGG 0.559513 tig0018782:+1797 None:intergenic
TCCTCAATTCCAAATACTCA+AGG 0.566315 tig0018782:-2046 Msa1369340:intron
GTATTATCATGAGGAGAAGT+GGG 0.567061 tig0018782:+1731 None:intergenic
TTGTTCGGTTGGAGTTGGGA+AGG 0.567594 tig0018782:+1676 None:intergenic
CAGAAAGACCAACAGATGAT+GGG 0.573763 tig0018782:-2100 Msa1369340:CDS
ATGTTTGTTCAAAAGGAAGA+GGG 0.576811 tig0018782:+2581 None:intergenic
AGTTCCATCCGTGGTGCTAG+AGG 0.577074 tig0018782:-2489 Msa1369340:CDS
GTAATAGGTGGTCTTATACA+AGG 0.578341 tig0018782:+1796 None:intergenic
AGAGAGCAGGTATTCATCCA+AGG 0.581141 tig0018782:+1550 None:intergenic
GAAAGCCATGAAAAGGGTGA+AGG 0.584427 tig0018782:+1378 None:intergenic
CATGCATTGTCCCAATAATG+AGG 0.585488 tig0018782:+1225 None:intergenic
AAGAGCATTAGGAAGATGGA+AGG 0.586002 tig0018782:-2874 Msa1369340:five_prime_UTR
TGTACAATATACAAAATGGC+CGG 0.591384 tig0018782:+1329 None:intergenic
AGATCCTCTAGCACCACGGA+TGG 0.599217 tig0018782:+2485 None:intergenic
GCAATATTCCACTGAATGTG+AGG 0.603090 tig0018782:+1589 None:intergenic
AGCAGGTATTCATCCAAGGA+AGG 0.605278 tig0018782:+1554 None:intergenic
ACATTCAGTGGAATATTGCA+AGG 0.616091 tig0018782:-1585 Msa1369340:CDS
GTTAAAGCTAAGCAATATGG+AGG 0.618068 tig0018782:+1703 None:intergenic
GAGGAAGTAGTATTATCATG+AGG 0.627255 tig0018782:+1722 None:intergenic
AAATTGGTTCAGGAGAGAGC+AGG 0.628355 tig0018782:+1537 None:intergenic
GCAATGAAGGAGCTTGTGAG+AGG 0.633274 tig0018782:-2723 Msa1369340:CDS
CAATGAAGGAGCTTGTGAGA+GGG 0.635141 tig0018782:-2722 Msa1369340:CDS
CTAATTTGTTACAAGTGTGG+TGG 0.636211 tig0018782:+1771 None:intergenic
AGTGTGGTGGCCGTAATAGG+TGG 0.645916 tig0018782:+1784 None:intergenic
AAATATGGATGATAGAGATG+AGG 0.650081 tig0018782:-2745 Msa1369340:exon
ACTTGAATCTGATGATCACA+GGG 0.651483 tig0018782:-1459 Msa1369340:CDS
TGTCTAATTTGTTACAAGTG+TGG 0.656286 tig0018782:+1768 None:intergenic
TGTGAGATCCTCTAGCACCA+CGG 0.670567 tig0018782:+2481 None:intergenic
TACAAGACTAGTTCCATCCG+TGG 0.678741 tig0018782:-2498 Msa1369340:CDS
TAGGTGGTCTTATACAAGGG+AGG 0.682870 tig0018782:+1800 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATTAATAATATAT+TGG + tig0018782:1737-1756 None:intergenic 0.0%
!! ATATATTATTAATATATATA+TGG - tig0018782:1737-1756 Msa1369340:CDS 0.0%
!! TATATATATTAATAATATAT+TGG + tig0018782:1737-1756 None:intergenic 0.0%
!! ATATATTATTAATATATATA+TGG - tig0018782:1737-1756 Msa1369340:CDS 0.0%
!! TATATATTAATTCAAATCAT+TGG + tig0018782:2240-2259 None:intergenic 10.0%
!! TATATATTAATTCAAATCAT+TGG + tig0018782:2240-2259 None:intergenic 10.0%
!! TATATATAGATGAATTAAGT+TGG + tig0018782:2154-2173 None:intergenic 15.0%
!! ATTTGAATTAATATATATGC+AGG - tig0018782:2243-2262 Msa1369340:intron 15.0%
!! TTTGAATTAATATATATGCA+GGG - tig0018782:2244-2263 Msa1369340:intron 15.0%
!! TATATATAGATGAATTAAGT+TGG + tig0018782:2154-2173 None:intergenic 15.0%
!! ATTTGAATTAATATATATGC+AGG - tig0018782:2243-2262 Msa1369340:intron 15.0%
!! TTTGAATTAATATATATGCA+GGG - tig0018782:2244-2263 Msa1369340:intron 15.0%
!! TTTAACTATTAAATCTGAAG+AGG - tig0018782:1606-1625 Msa1369340:CDS 20.0%
!! CAAATCATTGGATATATATT+AGG + tig0018782:2228-2247 None:intergenic 20.0%
!!! GAAATAGAGTTATCTAAAAT+TGG + tig0018782:2623-2642 None:intergenic 20.0%
!! GATATGATGATAATATTGTA+TGG - tig0018782:2704-2723 Msa1369340:CDS 20.0%
!! TTTAACTATTAAATCTGAAG+AGG - tig0018782:1606-1625 Msa1369340:CDS 20.0%
!! CAAATCATTGGATATATATT+AGG + tig0018782:2228-2247 None:intergenic 20.0%
!!! GAAATAGAGTTATCTAAAAT+TGG + tig0018782:2623-2642 None:intergenic 20.0%
!! GATATGATGATAATATTGTA+TGG - tig0018782:2704-2723 Msa1369340:CDS 20.0%
!!! TTTGATGATGTTTGTTCAAA+AGG + tig0018782:1570-1589 None:intergenic 25.0%
!! TTTTGAACAAACATCATCAA+AGG - tig0018782:1569-1588 Msa1369340:CDS 25.0%
! TTTGAACAAACATCATCAAA+GGG - tig0018782:1570-1589 Msa1369340:CDS 25.0%
!!! AAGTAGTTTGAGTTTTAACA+AGG + tig0018782:1844-1863 None:intergenic 25.0%
!! GAACATTTTCTATAGAATCA+TGG - tig0018782:1922-1941 Msa1369340:intron 25.0%
!! TAGAATCATGGTTAAGTTTT+TGG - tig0018782:1934-1953 Msa1369340:intron 25.0%
! ACAAACTGTGAAAAGTTATT+AGG + tig0018782:2199-2218 None:intergenic 25.0%
!!! TAGATAACTCTATTTCTACA+AGG - tig0018782:2627-2646 Msa1369340:CDS 25.0%
! ATAATTGAAAGCCATGAAAA+GGG + tig0018782:2772-2791 None:intergenic 25.0%
! TATAATTGAAAGCCATGAAA+AGG + tig0018782:2773-2792 None:intergenic 25.0%
! CTCATGTACAATATACAAAA+TGG + tig0018782:2819-2838 None:intergenic 25.0%
! AGAGAATAATAAAACGAGTA+TGG - tig0018782:2840-2859 Msa1369340:five_prime_UTR 25.0%
! ATATTGAGTAACCTCATTAT+TGG - tig0018782:2905-2924 Msa1369340:five_prime_UTR 25.0%
!!! TTTGATGATGTTTGTTCAAA+AGG + tig0018782:1570-1589 None:intergenic 25.0%
!! TTTTGAACAAACATCATCAA+AGG - tig0018782:1569-1588 Msa1369340:CDS 25.0%
! TTTGAACAAACATCATCAAA+GGG - tig0018782:1570-1589 Msa1369340:CDS 25.0%
!!! AAGTAGTTTGAGTTTTAACA+AGG + tig0018782:1844-1863 None:intergenic 25.0%
!! GAACATTTTCTATAGAATCA+TGG - tig0018782:1922-1941 Msa1369340:intron 25.0%
!! TAGAATCATGGTTAAGTTTT+TGG - tig0018782:1934-1953 Msa1369340:intron 25.0%
! ACAAACTGTGAAAAGTTATT+AGG + tig0018782:2199-2218 None:intergenic 25.0%
!!! TAGATAACTCTATTTCTACA+AGG - tig0018782:2627-2646 Msa1369340:CDS 25.0%
! ATAATTGAAAGCCATGAAAA+GGG + tig0018782:2772-2791 None:intergenic 25.0%
! TATAATTGAAAGCCATGAAA+AGG + tig0018782:2773-2792 None:intergenic 25.0%
! CTCATGTACAATATACAAAA+TGG + tig0018782:2819-2838 None:intergenic 25.0%
! AGAGAATAATAAAACGAGTA+TGG - tig0018782:2840-2859 Msa1369340:five_prime_UTR 25.0%
AAGTGAGAGAGTTGAAAATA+TGG - tig0018782:1381-1400 Msa1369340:CDS 30.0%
AAATATGGATGATAGAGATG+AGG - tig0018782:1396-1415 Msa1369340:CDS 30.0%
CAAGATGTTGTGCAAATAAT+GGG + tig0018782:1510-1529 None:intergenic 30.0%
ACAAGATGTTGTGCAAATAA+TGG + tig0018782:1511-1530 None:intergenic 30.0%
ATGTTTGTTCAAAAGGAAGA+GGG + tig0018782:1563-1582 None:intergenic 30.0%
AACATGAAATTCTCATTGTG+TGG - tig0018782:1809-1828 Msa1369340:CDS 30.0%
ATATACACACCTTGAGTATT+TGG + tig0018782:2107-2126 None:intergenic 30.0%
!! TAACTTTTCACAGTTTGTTC+AGG - tig0018782:2201-2220 Msa1369340:intron 30.0%
!! AACTTTTCACAGTTTGTTCA+GGG - tig0018782:2202-2221 Msa1369340:intron 30.0%
!! TAATAGGTGGTCTTATACAA+GGG + tig0018782:2347-2366 None:intergenic 30.0%
TTGTATAAGACCACCTATTA+CGG - tig0018782:2347-2366 Msa1369340:intron 30.0%
!! TGTCTAATTTGTTACAAGTG+TGG + tig0018782:2376-2395 None:intergenic 30.0%
GTTGTTAAAGCTAAGCAATA+TGG + tig0018782:2444-2463 None:intergenic 30.0%
TAAAAAGGGACAATCTTGTT+CGG + tig0018782:2483-2502 None:intergenic 30.0%
!! TTTTAATTCCTCACATTCAG+TGG - tig0018782:2544-2563 Msa1369340:CDS 30.0%
! GAGTTATCTAAAATTGGTTC+AGG + tig0018782:2617-2636 None:intergenic 30.0%
TGTACAATATACAAAATGGC+CGG + tig0018782:2815-2834 None:intergenic 30.0%
AAGTGAGAGAGTTGAAAATA+TGG - tig0018782:1381-1400 Msa1369340:CDS 30.0%
AAATATGGATGATAGAGATG+AGG - tig0018782:1396-1415 Msa1369340:CDS 30.0%
CAAGATGTTGTGCAAATAAT+GGG + tig0018782:1510-1529 None:intergenic 30.0%
ACAAGATGTTGTGCAAATAA+TGG + tig0018782:1511-1530 None:intergenic 30.0%
ATGTTTGTTCAAAAGGAAGA+GGG + tig0018782:1563-1582 None:intergenic 30.0%
AACATGAAATTCTCATTGTG+TGG - tig0018782:1809-1828 Msa1369340:CDS 30.0%
ATATACACACCTTGAGTATT+TGG + tig0018782:2107-2126 None:intergenic 30.0%
!! TAACTTTTCACAGTTTGTTC+AGG - tig0018782:2201-2220 Msa1369340:intron 30.0%
!! AACTTTTCACAGTTTGTTCA+GGG - tig0018782:2202-2221 Msa1369340:intron 30.0%
!! TAATAGGTGGTCTTATACAA+GGG + tig0018782:2347-2366 None:intergenic 30.0%
TTGTATAAGACCACCTATTA+CGG - tig0018782:2347-2366 Msa1369340:intron 30.0%
!! TGTCTAATTTGTTACAAGTG+TGG + tig0018782:2376-2395 None:intergenic 30.0%
GTTGTTAAAGCTAAGCAATA+TGG + tig0018782:2444-2463 None:intergenic 30.0%
TAAAAAGGGACAATCTTGTT+CGG + tig0018782:2483-2502 None:intergenic 30.0%
!! TTTTAATTCCTCACATTCAG+TGG - tig0018782:2544-2563 Msa1369340:CDS 30.0%
! GAGTTATCTAAAATTGGTTC+AGG + tig0018782:2617-2636 None:intergenic 30.0%
TGTACAATATACAAAATGGC+CGG + tig0018782:2815-2834 None:intergenic 30.0%
!! AACACACATACAAGAGCATT+AGG - tig0018782:1256-1275 Msa1369340:three_prime_UTR 35.0%
!! ATACAAGAGCATTAGGAAGA+TGG - tig0018782:1263-1282 Msa1369340:three_prime_UTR 35.0%
GATGTTTGTTCAAAAGGAAG+AGG + tig0018782:1564-1583 None:intergenic 35.0%
!! TCATGGTTAAGTTTTTGGAG+TGG - tig0018782:1939-1958 Msa1369340:intron 35.0%
AAAAACTACAGAAACGTGTG+AGG - tig0018782:2012-2031 Msa1369340:intron 35.0%
TCCTCAATTCCAAATACTCA+AGG - tig0018782:2095-2114 Msa1369340:CDS 35.0%
! ACCTTGAGTATTTGGAATTG+AGG + tig0018782:2099-2118 None:intergenic 35.0%
TATTAGGAAACAGATCGATG+AGG + tig0018782:2183-2202 None:intergenic 35.0%
TTCAATTCTCTGCACTTGTT+TGG + tig0018782:2315-2334 None:intergenic 35.0%
!! GTAATAGGTGGTCTTATACA+AGG + tig0018782:2348-2367 None:intergenic 35.0%
!! CTAATTTGTTACAAGTGTGG+TGG + tig0018782:2373-2392 None:intergenic 35.0%
GTATTATCATGAGGAGAAGT+GGG + tig0018782:2413-2432 None:intergenic 35.0%
AGTATTATCATGAGGAGAAG+TGG + tig0018782:2414-2433 None:intergenic 35.0%
GAGGAAGTAGTATTATCATG+AGG + tig0018782:2422-2441 None:intergenic 35.0%
GTTAAAGCTAAGCAATATGG+AGG + tig0018782:2441-2460 None:intergenic 35.0%
GATGTCGACGATGATAAAAA+GGG + tig0018782:2497-2516 None:intergenic 35.0%
TGATGTCGACGATGATAAAA+AGG + tig0018782:2498-2517 None:intergenic 35.0%
ACATTCAGTGGAATATTGCA+AGG - tig0018782:2556-2575 Msa1369340:CDS 35.0%
ACTTGAATCTGATGATCACA+GGG - tig0018782:2682-2701 Msa1369340:CDS 35.0%
GTAGATAACCTTTACATGTC+CGG - tig0018782:2793-2812 Msa1369340:five_prime_UTR 35.0%
!! AACACACATACAAGAGCATT+AGG - tig0018782:1256-1275 Msa1369340:three_prime_UTR 35.0%
!! ATACAAGAGCATTAGGAAGA+TGG - tig0018782:1263-1282 Msa1369340:three_prime_UTR 35.0%
GATGTTTGTTCAAAAGGAAG+AGG + tig0018782:1564-1583 None:intergenic 35.0%
!! TCATGGTTAAGTTTTTGGAG+TGG - tig0018782:1939-1958 Msa1369340:intron 35.0%
AAAAACTACAGAAACGTGTG+AGG - tig0018782:2012-2031 Msa1369340:intron 35.0%
TCCTCAATTCCAAATACTCA+AGG - tig0018782:2095-2114 Msa1369340:CDS 35.0%
! ACCTTGAGTATTTGGAATTG+AGG + tig0018782:2099-2118 None:intergenic 35.0%
TATTAGGAAACAGATCGATG+AGG + tig0018782:2183-2202 None:intergenic 35.0%
TTCAATTCTCTGCACTTGTT+TGG + tig0018782:2315-2334 None:intergenic 35.0%
!! GTAATAGGTGGTCTTATACA+AGG + tig0018782:2348-2367 None:intergenic 35.0%
!! CTAATTTGTTACAAGTGTGG+TGG + tig0018782:2373-2392 None:intergenic 35.0%
GTATTATCATGAGGAGAAGT+GGG + tig0018782:2413-2432 None:intergenic 35.0%
AGTATTATCATGAGGAGAAG+TGG + tig0018782:2414-2433 None:intergenic 35.0%
GAGGAAGTAGTATTATCATG+AGG + tig0018782:2422-2441 None:intergenic 35.0%
GTTAAAGCTAAGCAATATGG+AGG + tig0018782:2441-2460 None:intergenic 35.0%
GATGTCGACGATGATAAAAA+GGG + tig0018782:2497-2516 None:intergenic 35.0%
TGATGTCGACGATGATAAAA+AGG + tig0018782:2498-2517 None:intergenic 35.0%
ACATTCAGTGGAATATTGCA+AGG - tig0018782:2556-2575 Msa1369340:CDS 35.0%
ACTTGAATCTGATGATCACA+GGG - tig0018782:2682-2701 Msa1369340:CDS 35.0%
GTAGATAACCTTTACATGTC+CGG - tig0018782:2793-2812 Msa1369340:five_prime_UTR 35.0%
!! AAGAGCATTAGGAAGATGGA+AGG - tig0018782:1267-1286 Msa1369340:three_prime_UTR 40.0%
CATTAGGAAGATGGAAGGAA+GGG - tig0018782:1272-1291 Msa1369340:three_prime_UTR 40.0%
TGATAGAGATGAGGCAATGA+AGG - tig0018782:1405-1424 Msa1369340:CDS 40.0%
CTAGAGGATCTCACAAAAGA+AGG - tig0018782:1668-1687 Msa1369340:CDS 40.0%
! AGTCATGTTGTTTGCTAGCT+AGG - tig0018782:1894-1913 Msa1369340:intron 40.0%
TCAGAAAGACCAACAGATGA+TGG - tig0018782:2040-2059 Msa1369340:intron 40.0%
CAGAAAGACCAACAGATGAT+GGG - tig0018782:2041-2060 Msa1369340:intron 40.0%
ATATATGCAGGGACTACTAC+AGG - tig0018782:2255-2274 Msa1369340:intron 40.0%
AATCTTGTTCGGTTGGAGTT+GGG + tig0018782:2472-2491 None:intergenic 40.0%
GCAATATTCCACTGAATGTG+AGG + tig0018782:2555-2574 None:intergenic 40.0%
CACTTGAATCTGATGATCAC+AGG - tig0018782:2681-2700 Msa1369340:CDS 40.0%
! GATTTCCTTCACCCTTTTCA+TGG - tig0018782:2758-2777 Msa1369340:exon 40.0%
!! AAGAGCATTAGGAAGATGGA+AGG - tig0018782:1267-1286 Msa1369340:three_prime_UTR 40.0%
CATTAGGAAGATGGAAGGAA+GGG - tig0018782:1272-1291 Msa1369340:three_prime_UTR 40.0%
TGATAGAGATGAGGCAATGA+AGG - tig0018782:1405-1424 Msa1369340:CDS 40.0%
CTAGAGGATCTCACAAAAGA+AGG - tig0018782:1668-1687 Msa1369340:CDS 40.0%
! AGTCATGTTGTTTGCTAGCT+AGG - tig0018782:1894-1913 Msa1369340:intron 40.0%
TCAGAAAGACCAACAGATGA+TGG - tig0018782:2040-2059 Msa1369340:intron 40.0%
CAGAAAGACCAACAGATGAT+GGG - tig0018782:2041-2060 Msa1369340:intron 40.0%
ATATATGCAGGGACTACTAC+AGG - tig0018782:2255-2274 Msa1369340:intron 40.0%
AATCTTGTTCGGTTGGAGTT+GGG + tig0018782:2472-2491 None:intergenic 40.0%
GCAATATTCCACTGAATGTG+AGG + tig0018782:2555-2574 None:intergenic 40.0%
CACTTGAATCTGATGATCAC+AGG - tig0018782:2681-2700 Msa1369340:CDS 40.0%
! GATTTCCTTCACCCTTTTCA+TGG - tig0018782:2758-2777 Msa1369340:exon 40.0%
GCATTAGGAAGATGGAAGGA+AGG - tig0018782:1271-1290 Msa1369340:three_prime_UTR 45.0%
CAATGAAGGAGCTTGTGAGA+GGG - tig0018782:1419-1438 Msa1369340:CDS 45.0%
! TACAAGACTAGTTCCATCCG+TGG - tig0018782:1643-1662 Msa1369340:CDS 45.0%
CATTCATGCCCATCATCTGT+TGG + tig0018782:2052-2071 None:intergenic 45.0%
!! CAACAGATGATGGGCATGAA+TGG - tig0018782:2050-2069 Msa1369340:CDS 45.0%
GGGCATGAATGGAGAAAGTA+TGG - tig0018782:2061-2080 Msa1369340:CDS 45.0%
TAGGAAACAGATCGATGAGG+AGG + tig0018782:2180-2199 None:intergenic 45.0%
!! TAGGTGGTCTTATACAAGGG+AGG + tig0018782:2344-2363 None:intergenic 45.0%
CAATCTTGTTCGGTTGGAGT+TGG + tig0018782:2473-2492 None:intergenic 45.0%
AAGGGACAATCTTGTTCGGT+TGG + tig0018782:2479-2498 None:intergenic 45.0%
AGCAGGTATTCATCCAAGGA+AGG + tig0018782:2590-2609 None:intergenic 45.0%
AGAGAGCAGGTATTCATCCA+AGG + tig0018782:2594-2613 None:intergenic 45.0%
! AAATTGGTTCAGGAGAGAGC+AGG + tig0018782:2607-2626 None:intergenic 45.0%
GAAAGCCATGAAAAGGGTGA+AGG + tig0018782:2766-2785 None:intergenic 45.0%
CAAAATGGCCGGACATGTAA+AGG + tig0018782:2804-2823 None:intergenic 45.0%
GCATTAGGAAGATGGAAGGA+AGG - tig0018782:1271-1290 Msa1369340:three_prime_UTR 45.0%
CAATGAAGGAGCTTGTGAGA+GGG - tig0018782:1419-1438 Msa1369340:CDS 45.0%
! TACAAGACTAGTTCCATCCG+TGG - tig0018782:1643-1662 Msa1369340:CDS 45.0%
CATTCATGCCCATCATCTGT+TGG + tig0018782:2052-2071 None:intergenic 45.0%
!! CAACAGATGATGGGCATGAA+TGG - tig0018782:2050-2069 Msa1369340:CDS 45.0%
GGGCATGAATGGAGAAAGTA+TGG - tig0018782:2061-2080 Msa1369340:CDS 45.0%
TAGGAAACAGATCGATGAGG+AGG + tig0018782:2180-2199 None:intergenic 45.0%
!! TAGGTGGTCTTATACAAGGG+AGG + tig0018782:2344-2363 None:intergenic 45.0%
CAATCTTGTTCGGTTGGAGT+TGG + tig0018782:2473-2492 None:intergenic 45.0%
AAGGGACAATCTTGTTCGGT+TGG + tig0018782:2479-2498 None:intergenic 45.0%
AGCAGGTATTCATCCAAGGA+AGG + tig0018782:2590-2609 None:intergenic 45.0%
AGAGAGCAGGTATTCATCCA+AGG + tig0018782:2594-2613 None:intergenic 45.0%
! AAATTGGTTCAGGAGAGAGC+AGG + tig0018782:2607-2626 None:intergenic 45.0%
GAAAGCCATGAAAAGGGTGA+AGG + tig0018782:2766-2785 None:intergenic 45.0%
CAAAATGGCCGGACATGTAA+AGG + tig0018782:2804-2823 None:intergenic 45.0%
GCAATGAAGGAGCTTGTGAG+AGG - tig0018782:1418-1437 Msa1369340:CDS 50.0%
TGTGAGATCCTCTAGCACCA+CGG + tig0018782:1663-1682 None:intergenic 50.0%
ACAAGTGTGGTGGCCGTAAT+AGG + tig0018782:2363-2382 None:intergenic 50.0%
TTGTTCGGTTGGAGTTGGGA+AGG + tig0018782:2468-2487 None:intergenic 50.0%
CAAGGAGAACTCACCTTCCT+TGG - tig0018782:2574-2593 Msa1369340:CDS 50.0%
GCAATGAAGGAGCTTGTGAG+AGG - tig0018782:1418-1437 Msa1369340:CDS 50.0%
TGTGAGATCCTCTAGCACCA+CGG + tig0018782:1663-1682 None:intergenic 50.0%
ACAAGTGTGGTGGCCGTAAT+AGG + tig0018782:2363-2382 None:intergenic 50.0%
TTGTTCGGTTGGAGTTGGGA+AGG + tig0018782:2468-2487 None:intergenic 50.0%
CAAGGAGAACTCACCTTCCT+TGG - tig0018782:2574-2593 Msa1369340:CDS 50.0%
! AGTTCCATCCGTGGTGCTAG+AGG - tig0018782:1652-1671 Msa1369340:CDS 55.0%
AGATCCTCTAGCACCACGGA+TGG + tig0018782:1659-1678 None:intergenic 55.0%
AGTGTGGTGGCCGTAATAGG+TGG + tig0018782:2360-2379 None:intergenic 55.0%
! AGTTCCATCCGTGGTGCTAG+AGG - tig0018782:1652-1671 Msa1369340:CDS 55.0%
AGATCCTCTAGCACCACGGA+TGG + tig0018782:1659-1678 None:intergenic 55.0%
AGTGTGGTGGCCGTAATAGG+TGG + tig0018782:2360-2379 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0018782 gene 1237 2926 1237 ID=Msa1369340;Name=Msa1369340
tig0018782 mRNA 1237 2926 1237 ID=Msa1369340-mRNA-1;Parent=Msa1369340;Name=Msa1369340-mRNA-1;_AED=0.02;_eAED=0.02;_QI=163|1|1|1|1|1|3|133|307
tig0018782 exon 1237 1898 1237 ID=Msa1369340-mRNA-1:exon:1078;Parent=Msa1369340-mRNA-1
tig0018782 exon 2047 2151 2047 ID=Msa1369340-mRNA-1:exon:1077;Parent=Msa1369340-mRNA-1
tig0018782 exon 2474 2926 2474 ID=Msa1369340-mRNA-1:exon:1076;Parent=Msa1369340-mRNA-1
tig0018782 five_prime_UTR 2764 2926 2764 ID=Msa1369340-mRNA-1:five_prime_utr;Parent=Msa1369340-mRNA-1
tig0018782 CDS 2474 2763 2474 ID=Msa1369340-mRNA-1:cds;Parent=Msa1369340-mRNA-1
tig0018782 CDS 2047 2151 2047 ID=Msa1369340-mRNA-1:cds;Parent=Msa1369340-mRNA-1
tig0018782 CDS 1370 1898 1370 ID=Msa1369340-mRNA-1:cds;Parent=Msa1369340-mRNA-1
tig0018782 three_prime_UTR 1237 1369 1237 ID=Msa1369340-mRNA-1:three_prime_utr;Parent=Msa1369340-mRNA-1
Gene Sequence

>Msa1369340

ATGGATGATAGAGATGAGGCAATGAAGGAGCTTGTGAGAGGGCGTGAGTTAGCTAAGCAGCTTGAACAACATCTTAGTAACAACATTAATGATAAATTATTAGCAAGCCCATTATTTGCACAACATCTTGTAAGCAACGTTGTCAACTCATTTAGTAACACCCTCTTCCTTTTGAACAAACATCATCAAAGGGAACAAAACTTTTCTTTAACTATTAAATCTGAAGAGGAATCTCAAGATAGTTACAAGACTAGTTCCATCCGTGGTGCTAGAGGATCTCACAAAAGAAGAAAAACTACAGAAACGTGTGAGGAAGTGTCAGAAAGACCAACAGATGATGGGCATGAATGGAGAAAGTATGGTCAAAAAACAATCCTCAATTCCAAATACTCAAGGGACTACTACAGGTGTACTCACAAGTTTAATCAAAGATGCAAAGCAACCAAACAAGTGCAGAGAATTGAAGAGAAGCCTCCCTTGTATAAGACCACCTATTACGGCCACCACACTTGTAACAAATTAGACAGTATCATATTTGAACCCACTTCTCCTCATGATAATACTACTTCCTCCATATTGCTTAGCTTTAACAACACCTTCCCAACTCCAACCGAACAAGATTGTCCCTTTTTATCATCGTCGACATCATCATCATCATCATCATCATCTTCGTCTTTTAATTCCTCACATTCAGTGGAATATTGCAAGGAGAACTCACCTTCCTTGGATGAATACCTGCTCTCTCCTGAACCAATTTTAGATAACTCTATTTCTACAAGGCATGTTCGTAGTACTCTATCATCATCAACTACACTTGAATCTGATGATCACAGGGATATGATGATAATATTGTATGGTCTCTTGTATGATTCTGTTGAACTTGATACTGATTTCCTTCACCCTTTTCATGGCTTTCAATTATAG
Protein sequence

>Msa1369340

MDDRDEAMKELVRGRELAKQLEQHLSNNINDKLLASPLFAQHLVSNVVNSFSNTLFLLNKHHQREQNFSLTIKSEEESQDSYKTSSIRGARGSHKRRKTTETCEEVSERPTDDGHEWRKYGQKTILNSKYSRDYYRCTHKFNQRCKATKQVQRIEEKPPLYKTTYYGHHTCNKLDSIIFEPTSPHDNTTSSILLSFNNTFPTPTEQDCPFLSSSTSSSSSSSSSSFNSSHSVEYCKENSPSLDEYLLSPEPILDNSISTRHVRSTLSSSTTLESDDHRDMMIILYGLLYDSVELDTDFLHPFHGFQL*