Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1271320 | sp|Q9FPT1|UBP12_ARATH | 29.333 | 150 | 95 | 4 | 26 | 175 | 51 | 189 | 3.79e-12 | 72.8 |
| Msa1271320 | sp|Q9FPT1|UBP12_ARATH | 30.201 | 149 | 95 | 5 | 228 | 374 | 38 | 179 | 4.11e-11 | 69.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1271320 | A0A396GIL6 | 71.053 | 532 | 95 | 6 | 1 | 520 | 1 | 485 | 0.0 | 704 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1228080 | Msa1271320 | 0.903828 | 2.315806e-79 | -8.615850e-47 |
| Msa1271320 | Msa1308240 | 0.884132 | 2.489336e-71 | -8.615850e-47 |
| Msa1184360 | Msa1271320 | 0.885394 | 8.442683e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1271320 | MtrunA17_Chr8g0334821 | 71.053 | 532 | 95 | 6 | 1 | 520 | 1 | 485 | 0.0 | 704 |
| Msa1271320 | MtrunA17_Chr4g0069161 | 31.781 | 365 | 182 | 7 | 19 | 380 | 7 | 307 | 3.09e-43 | 155 |
| Msa1271320 | MtrunA17_Chr5g0439971 | 33.333 | 153 | 90 | 5 | 26 | 178 | 56 | 196 | 7.60e-16 | 80.9 |
| Msa1271320 | MtrunA17_Chr5g0439971 | 32.468 | 154 | 93 | 5 | 232 | 380 | 43 | 190 | 8.44e-16 | 80.9 |
| Msa1271320 | MtrunA17_Chr1g0170261 | 30.000 | 150 | 93 | 4 | 26 | 175 | 54 | 191 | 1.57e-15 | 80.1 |
| Msa1271320 | MtrunA17_Chr3g0119031 | 32.414 | 145 | 89 | 5 | 238 | 380 | 48 | 185 | 8.56e-15 | 77.8 |
| Msa1271320 | MtrunA17_Chr3g0119031 | 30.201 | 149 | 93 | 4 | 26 | 174 | 51 | 188 | 3.47e-14 | 75.9 |
| Msa1271320 | MtrunA17_Chr5g0443161 | 35.897 | 117 | 68 | 3 | 49 | 165 | 48 | 157 | 1.01e-14 | 74.3 |
| Msa1271320 | MtrunA17_Chr5g0443194 | 33.607 | 122 | 70 | 3 | 36 | 153 | 17 | 131 | 2.44e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1271320 | AT3G17380.1 | 46.622 | 148 | 75 | 2 | 20 | 167 | 10 | 153 | 6.90e-35 | 133 |
| Msa1271320 | AT5G26290.1 | 42.384 | 151 | 83 | 3 | 19 | 169 | 42 | 188 | 5.85e-33 | 129 |
| Msa1271320 | AT5G26260.1 | 42.949 | 156 | 84 | 4 | 13 | 168 | 45 | 195 | 1.62e-32 | 127 |
| Msa1271320 | AT5G26280.1 | 40.244 | 164 | 94 | 3 | 6 | 169 | 36 | 195 | 1.88e-32 | 127 |
| Msa1271320 | AT5G26280.3 | 42.105 | 152 | 84 | 3 | 18 | 169 | 67 | 214 | 3.77e-32 | 127 |
| Msa1271320 | AT5G26300.1 | 41.104 | 163 | 91 | 4 | 7 | 169 | 37 | 194 | 1.70e-31 | 125 |
| Msa1271320 | AT2G04170.4 | 45.775 | 142 | 73 | 3 | 25 | 166 | 3 | 140 | 6.92e-31 | 122 |
| Msa1271320 | AT2G04170.3 | 45.775 | 142 | 73 | 3 | 25 | 166 | 3 | 140 | 6.92e-31 | 122 |
| Msa1271320 | AT2G04170.6 | 45.775 | 142 | 73 | 3 | 25 | 166 | 85 | 222 | 4.08e-30 | 121 |
| Msa1271320 | AT2G04170.2 | 45.775 | 142 | 73 | 3 | 25 | 166 | 125 | 262 | 6.95e-30 | 122 |
| Msa1271320 | AT2G04170.1 | 45.775 | 142 | 73 | 3 | 25 | 166 | 125 | 262 | 6.95e-30 | 122 |
| Msa1271320 | AT2G04170.5 | 45.775 | 142 | 73 | 3 | 25 | 166 | 125 | 262 | 9.47e-30 | 120 |
| Msa1271320 | AT2G04170.7 | 45.775 | 142 | 73 | 3 | 25 | 166 | 125 | 262 | 1.45e-29 | 119 |
| Msa1271320 | AT5G26320.1 | 34.545 | 165 | 102 | 4 | 6 | 168 | 36 | 196 | 3.12e-25 | 107 |
| Msa1271320 | AT3G20370.1 | 40.141 | 142 | 80 | 4 | 25 | 165 | 81 | 218 | 3.49e-24 | 104 |
| Msa1271320 | AT3G20370.2 | 40.141 | 142 | 80 | 4 | 25 | 165 | 59 | 196 | 4.94e-24 | 103 |
| Msa1271320 | AT3G20360.1 | 35.976 | 164 | 99 | 3 | 8 | 167 | 42 | 203 | 5.48e-24 | 103 |
| Msa1271320 | AT3G28220.1 | 25.000 | 356 | 197 | 10 | 25 | 378 | 76 | 363 | 1.24e-23 | 102 |
| Msa1271320 | AT4G09770.4 | 35.333 | 150 | 90 | 4 | 20 | 169 | 26 | 168 | 1.85e-22 | 98.6 |
| Msa1271320 | AT2G15710.1 | 36.943 | 157 | 91 | 4 | 25 | 178 | 94 | 245 | 2.24e-22 | 99.4 |
| Msa1271320 | AT4G09770.5 | 35.333 | 150 | 90 | 4 | 20 | 169 | 26 | 168 | 2.45e-22 | 97.4 |
| Msa1271320 | AT3G22080.1 | 34.810 | 158 | 95 | 4 | 22 | 174 | 12 | 166 | 2.46e-22 | 98.2 |
| Msa1271320 | AT4G09770.2 | 35.374 | 147 | 88 | 4 | 23 | 169 | 3 | 142 | 2.97e-22 | 97.4 |
| Msa1271320 | AT4G09770.1 | 35.374 | 147 | 88 | 4 | 23 | 169 | 3 | 142 | 2.97e-22 | 97.4 |
| Msa1271320 | AT4G09770.3 | 35.374 | 147 | 88 | 4 | 23 | 169 | 3 | 142 | 3.86e-22 | 96.3 |
| Msa1271320 | AT2G04190.1 | 36.076 | 158 | 96 | 4 | 11 | 167 | 101 | 254 | 4.06e-22 | 99.0 |
| Msa1271320 | AT5G26280.2 | 34.146 | 164 | 81 | 4 | 6 | 169 | 36 | 172 | 5.42e-22 | 97.4 |
| Msa1271320 | AT4G09780.2 | 35.333 | 150 | 91 | 4 | 20 | 169 | 53 | 196 | 7.70e-20 | 92.4 |
| Msa1271320 | AT4G09780.1 | 35.333 | 150 | 91 | 4 | 20 | 169 | 53 | 196 | 9.89e-20 | 92.0 |
| Msa1271320 | AT1G65050.2 | 33.333 | 132 | 78 | 3 | 22 | 153 | 12 | 133 | 1.30e-17 | 80.9 |
| Msa1271320 | AT1G65050.1 | 33.333 | 132 | 78 | 3 | 22 | 153 | 12 | 133 | 1.30e-17 | 80.9 |
| Msa1271320 | AT3G20380.1 | 32.414 | 145 | 95 | 2 | 26 | 170 | 83 | 224 | 1.54e-17 | 84.7 |
| Msa1271320 | AT3G22085.1 | 32.026 | 153 | 81 | 4 | 23 | 174 | 12 | 142 | 1.78e-16 | 80.5 |
| Msa1271320 | AT1G58270.1 | 26.257 | 179 | 120 | 4 | 9 | 177 | 67 | 243 | 7.94e-15 | 77.0 |
| Msa1271320 | AT1G65150.2 | 31.333 | 150 | 93 | 4 | 19 | 168 | 9 | 148 | 1.27e-14 | 75.1 |
| Msa1271320 | AT1G65150.1 | 31.333 | 150 | 93 | 4 | 19 | 168 | 9 | 148 | 1.27e-14 | 75.1 |
| Msa1271320 | AT5G06600.3 | 29.333 | 150 | 95 | 4 | 26 | 175 | 51 | 189 | 2.99e-13 | 73.2 |
| Msa1271320 | AT5G06600.3 | 30.201 | 149 | 95 | 5 | 228 | 374 | 38 | 179 | 4.14e-12 | 69.3 |
| Msa1271320 | AT5G06600.1 | 29.333 | 150 | 95 | 4 | 26 | 175 | 51 | 189 | 3.85e-13 | 72.8 |
| Msa1271320 | AT5G06600.1 | 30.201 | 149 | 95 | 5 | 228 | 374 | 38 | 179 | 4.17e-12 | 69.7 |
| Msa1271320 | AT5G06600.2 | 29.333 | 150 | 95 | 4 | 26 | 175 | 50 | 188 | 4.02e-13 | 72.8 |
| Msa1271320 | AT5G06600.2 | 30.201 | 149 | 95 | 5 | 228 | 374 | 37 | 178 | 4.10e-12 | 69.7 |
| Msa1271320 | AT3G11910.4 | 27.439 | 164 | 111 | 4 | 219 | 380 | 26 | 183 | 1.09e-12 | 71.2 |
| Msa1271320 | AT3G11910.4 | 31.496 | 127 | 79 | 3 | 49 | 175 | 69 | 187 | 1.31e-12 | 71.2 |
| Msa1271320 | AT3G11910.2 | 27.439 | 164 | 111 | 4 | 219 | 380 | 26 | 183 | 1.09e-12 | 71.2 |
| Msa1271320 | AT3G11910.2 | 31.496 | 127 | 79 | 3 | 49 | 175 | 69 | 187 | 1.31e-12 | 71.2 |
| Msa1271320 | AT3G11910.3 | 27.439 | 164 | 111 | 4 | 219 | 380 | 27 | 184 | 1.14e-12 | 71.2 |
| Msa1271320 | AT3G11910.3 | 31.496 | 127 | 79 | 3 | 49 | 175 | 70 | 188 | 1.30e-12 | 71.2 |
| Msa1271320 | AT3G11910.1 | 27.439 | 164 | 111 | 4 | 219 | 380 | 27 | 184 | 1.14e-12 | 71.2 |
| Msa1271320 | AT3G11910.1 | 31.496 | 127 | 79 | 3 | 49 | 175 | 70 | 188 | 1.30e-12 | 71.2 |
Find 110 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTCGCCATTCTGGAAAT+TGG | 0.166182 | 8_3:+4862874 | Msa1271320:CDS |
| TGCTAGAGGTTCCATGATTA+TGG | 0.277744 | 8_3:-4863841 | None:intergenic |
| GAACTCAATCTAGCAGAAAA+TGG | 0.290019 | 8_3:+4864570 | Msa1271320:CDS |
| ATGTGTAAATAGGAATTTAC+TGG | 0.318596 | 8_3:+4863375 | Msa1271320:intron |
| CAACATATGGCTCCTTTACT+TGG | 0.321819 | 8_3:+4863102 | Msa1271320:CDS |
| ATCACCAACAGTGAAGGTTT+TGG | 0.327804 | 8_3:-4863171 | None:intergenic |
| AAGTGATCAAAACCCCATTC+AGG | 0.333445 | 8_3:-4862768 | None:intergenic |
| GCATTCACTGTTGTATTTGA+TGG | 0.334498 | 8_3:-4863481 | None:intergenic |
| CCACAGCCAAGGAAAATGAT+TGG | 0.349740 | 8_3:-4862086 | None:intergenic |
| AGGAATTTACTGGTTATTCC+TGG | 0.363144 | 8_3:+4863385 | Msa1271320:intron |
| AATTTGTCAAAGTCCGAAAA+TGG | 0.366823 | 8_3:+4863891 | Msa1271320:CDS |
| TGGTGGCAGCAAGCCTCCTA+TGG | 0.376131 | 8_3:+4863061 | Msa1271320:CDS |
| GTGGAGGAGCCAGTTGTTAG+AGG | 0.384755 | 8_3:-4862963 | None:intergenic |
| GAACTCTTTGATTCATGTAA+TGG | 0.386387 | 8_3:+4862804 | Msa1271320:CDS |
| GAAAATGGTGTTGTCTGATC+TGG | 0.389525 | 8_3:+4861747 | None:intergenic |
| GATGGCAAGCATCAGATATC+TGG | 0.400348 | 8_3:+4862993 | Msa1271320:CDS |
| TAATGAAATGAAACCTGAAT+GGG | 0.403034 | 8_3:+4862755 | Msa1271320:CDS |
| TGCTAGATTGAGTTCACTTA+GGG | 0.405522 | 8_3:-4864562 | None:intergenic |
| CTGCTAGATTGAGTTCACTT+AGG | 0.413708 | 8_3:-4864563 | None:intergenic |
| GATTCGCCATTCTGGAAATT+GGG | 0.428445 | 8_3:+4862875 | Msa1271320:CDS |
| GAAGAAGATAGATGTGTGTT+TGG | 0.428668 | 8_3:+4862837 | Msa1271320:CDS |
| CATAATGTTGATTCTGAAGC+TGG | 0.430444 | 8_3:-4863528 | None:intergenic |
| CTTGCCATCGTCGGTGGTGG+AGG | 0.430846 | 8_3:-4862979 | None:intergenic |
| TATAAATATCACGAGAAAAC+AGG | 0.430852 | 8_3:+4864398 | Msa1271320:CDS |
| CAAGCCTCCTATGGGACCTT+CGG | 0.431498 | 8_3:+4863070 | Msa1271320:CDS |
| CGAGAACTTGAGGTTGGCTT+AGG | 0.433731 | 8_3:-4861772 | None:intergenic |
| AGGTTTGCCACCGCCGGTGG+AGG | 0.434260 | 8_3:-4863018 | None:intergenic |
| GACAAGCCTCCAACAACATC+TGG | 0.444539 | 8_3:+4862918 | Msa1271320:CDS |
| AACAATTATTTGACCATCCA+AGG | 0.454086 | 8_3:+4862563 | Msa1271320:CDS |
| TGATCACTTAATTTCATTCG+AGG | 0.457349 | 8_3:+4862782 | Msa1271320:CDS |
| AATCAACATTATGAGAAAAC+AGG | 0.464814 | 8_3:+4863538 | Msa1271320:CDS |
| AGCGGCAAACCTCTAACAAC+TGG | 0.466610 | 8_3:+4862954 | Msa1271320:CDS |
| ACTAAAGATGTCCATAATCA+TGG | 0.467028 | 8_3:+4863830 | Msa1271320:CDS |
| TTGTGCTTCAAATAAGCAAA+GGG | 0.470033 | 8_3:+4863719 | Msa1271320:CDS |
| CGTGATATTTATAACGAAGC+TGG | 0.472433 | 8_3:-4864388 | None:intergenic |
| AGGTTTGCCGCTGTCGGTGG+AGG | 0.473434 | 8_3:-4862943 | None:intergenic |
| CTGCCACCAGTGGAGGAGCC+CGG | 0.473945 | 8_3:-4863047 | None:intergenic |
| TGATTATACCAATGTCTCTC+AGG | 0.477508 | 8_3:-4863935 | None:intergenic |
| TCTGGCTCCTCCACCGGCGG+TGG | 0.479745 | 8_3:+4863011 | Msa1271320:CDS |
| GTGGAGGAGCCAGATGTTGT+TGG | 0.481372 | 8_3:-4862927 | None:intergenic |
| TATTATTTATTGCAGGAAGT+TGG | 0.485728 | 8_3:+4862400 | Msa1271320:intron |
| TAAAGACGATGCTATAATCA+TGG | 0.486495 | 8_3:+4864599 | Msa1271320:CDS |
| TTAATGAAATGAAACCTGAA+TGG | 0.492526 | 8_3:+4862754 | Msa1271320:CDS |
| AGAGAAACTTCCTCGTGGTT+GGG | 0.492926 | 8_3:+4862496 | Msa1271320:CDS |
| TTTCACAATCTGTTAGCTGC+AGG | 0.493802 | 8_3:-4863453 | None:intergenic |
| AAGAGAAACTTCCTCGTGGT+TGG | 0.497936 | 8_3:+4862495 | Msa1271320:CDS |
| TCTCTTTATCTGCAATTGCT+AGG | 0.498543 | 8_3:-4862478 | None:intergenic |
| TCGGTGGAGCCTCCAACATA+TGG | 0.499115 | 8_3:+4863089 | Msa1271320:CDS |
| AAACGATAAAATAATCTTGG+AGG | 0.502461 | 8_3:+4863800 | Msa1271320:CDS |
| CAAGTAAAGGAGCCATATGT+TGG | 0.508456 | 8_3:-4863101 | None:intergenic |
| GAGGAGCCAGATGTTGTTGG+AGG | 0.509126 | 8_3:-4862924 | None:intergenic |
| TGTTAGAGGTTTGCCGCTGT+CGG | 0.512856 | 8_3:-4862949 | None:intergenic |
| TCAAGTTCTCGCTGTGGTGT+TGG | 0.520881 | 8_3:+4861784 | Msa1271320:CDS |
| ATCTTAAACAAATAATCAGC+TGG | 0.523582 | 8_3:-4862063 | None:intergenic |
| TAGAGGTTTGCCGCTGTCGG+TGG | 0.524832 | 8_3:-4862946 | None:intergenic |
| AAGTTGCCCAATTTCCAGAA+TGG | 0.525211 | 8_3:-4862881 | None:intergenic |
| ATGCTTGCCATCGTCGGTGG+TGG | 0.531952 | 8_3:-4862982 | None:intergenic |
| AGGCTTGCTGCCACCAGTGG+AGG | 0.534969 | 8_3:-4863054 | None:intergenic |
| TGCAGCTAACAGATTGTGAA+AGG | 0.535458 | 8_3:+4863455 | Msa1271320:CDS |
| GGTGGCAGCAAGCCTCCTAT+GGG | 0.537840 | 8_3:+4863062 | Msa1271320:CDS |
| GCCTCCTATGGGACCTTCGG+TGG | 0.540110 | 8_3:+4863073 | Msa1271320:CDS |
| ATGTTACGTTATACCTTGGA+TGG | 0.540323 | 8_3:-4862576 | None:intergenic |
| GGCTCCTCCACCACCGACGA+TGG | 0.540723 | 8_3:+4862975 | Msa1271320:CDS |
| CACATCTATCTTCTTCATCA+AGG | 0.545426 | 8_3:-4862830 | None:intergenic |
| CTGGAGGAAATTCTATAGAC+GGG | 0.546671 | 8_3:+4863404 | Msa1271320:CDS |
| TTTGTGCTTCAAATAAGCAA+AGG | 0.547081 | 8_3:+4863718 | Msa1271320:CDS |
| GACTTCAGAACTTGTTAACA+TGG | 0.548759 | 8_3:+4863126 | Msa1271320:CDS |
| ATCTCCAAAACCTTCACTGT+TGG | 0.550291 | 8_3:+4863167 | Msa1271320:CDS |
| TGGCTCAAGCGAAACTATAG+TGG | 0.555521 | 8_3:+4863911 | Msa1271320:CDS |
| TGAAATCTCTAACATATCCA+TGG | 0.555659 | 8_3:+4864626 | Msa1271320:CDS |
| GTTCTGAAGTCTCCAAGTAA+AGG | 0.556006 | 8_3:-4863114 | None:intergenic |
| CCTGGAGGAAATTCTATAGA+CGG | 0.557036 | 8_3:+4863403 | Msa1271320:CDS |
| AGGAGGCTTGCTGCCACCAG+TGG | 0.557206 | 8_3:-4863057 | None:intergenic |
| TGTTGTTGGAGGCTTGTCGC+CGG | 0.558944 | 8_3:-4862913 | None:intergenic |
| CTCTCTATCACCAACAGTGA+AGG | 0.559204 | 8_3:-4863177 | None:intergenic |
| CCGTCTATAGAATTTCCTCC+AGG | 0.562853 | 8_3:-4863403 | None:intergenic |
| CCACAGCGAGAACTTGAGGT+TGG | 0.576715 | 8_3:-4861778 | None:intergenic |
| TTTAGGTTTGCCACCGCCGG+TGG | 0.580272 | 8_3:-4863021 | None:intergenic |
| TATCTGATGCTTGCCATCGT+CGG | 0.584579 | 8_3:-4862988 | None:intergenic |
| CAGATATCTGGCTCCTCCAC+CGG | 0.587634 | 8_3:+4863005 | Msa1271320:CDS |
| CTTATTTGAAGCACAAAACG+AGG | 0.587924 | 8_3:-4863712 | None:intergenic |
| GTAAAGGAGCCATATGTTGG+AGG | 0.594906 | 8_3:-4863098 | None:intergenic |
| ATAGTGGTCCTGAGAGACAT+TGG | 0.596133 | 8_3:+4863927 | Msa1271320:CDS |
| AACACCACAGCGAGAACTTG+AGG | 0.606081 | 8_3:-4861782 | None:intergenic |
| ATATCTGGCTCCTCCACCGG+CGG | 0.606504 | 8_3:+4863008 | Msa1271320:CDS |
| TATGTTGGAGGCTCCACCGA+AGG | 0.610908 | 8_3:-4863086 | None:intergenic |
| TTGATTACTGTAGATGCTGA+TGG | 0.611226 | 8_3:+4862717 | Msa1271320:intron |
| TCTGGCTCCTCCACCGACAG+CGG | 0.614331 | 8_3:+4862936 | Msa1271320:CDS |
| TCCACCGAAGGTCCCATAGG+AGG | 0.616939 | 8_3:-4863074 | None:intergenic |
| GTTGGTGCAGACAGTATCGT+AGG | 0.619942 | 8_3:+4864272 | Msa1271320:CDS |
| TTCAAGCTGGTGGATACACA+TGG | 0.621317 | 8_3:+4862142 | Msa1271320:CDS |
| GGCTCCACCGAAGGTCCCAT+AGG | 0.622131 | 8_3:-4863077 | None:intergenic |
| AATCCGGGCTCCTCCACTGG+TGG | 0.622139 | 8_3:+4863044 | Msa1271320:CDS |
| CTGATGCTTGCCATCGTCGG+TGG | 0.623957 | 8_3:-4862985 | None:intergenic |
| AATTTACTGGTTATTCCTGG+AGG | 0.631353 | 8_3:+4863388 | Msa1271320:CDS |
| TTTGGAGATCACCACATCGG+AGG | 0.631551 | 8_3:-4863153 | None:intergenic |
| GAAACTTCCTCGTGGTTGGG+AGG | 0.634061 | 8_3:+4862499 | Msa1271320:CDS |
| CTGGGAGGGAATCTAAACCA+TGG | 0.636109 | 8_3:-4864643 | None:intergenic |
| TTAAACAAATAATCAGCTGG+TGG | 0.636707 | 8_3:-4862060 | None:intergenic |
| AATTCTATAGACGGGATCAG+TGG | 0.637854 | 8_3:+4863412 | Msa1271320:CDS |
| AATGAAATGAAACCTGAATG+GGG | 0.643373 | 8_3:+4862756 | Msa1271320:CDS |
| ACTTCAGAACTTGTTAACAT+GGG | 0.659774 | 8_3:+4863127 | Msa1271320:CDS |
| TGTGCTTCAAATAAGCAAAG+GGG | 0.668394 | 8_3:+4863720 | Msa1271320:CDS |
| AACATGGGTCGCCTCCGATG+TGG | 0.669387 | 8_3:+4863142 | Msa1271320:CDS |
| TAGTGATCTCAGACTCACAA+TGG | 0.678329 | 8_3:+4864520 | Msa1271320:CDS |
| CCAACCTCAAGTTCTCGCTG+TGG | 0.700988 | 8_3:+4861778 | Msa1271320:CDS |
| AGACGATGCTATAATCATGG+AGG | 0.727983 | 8_3:+4864602 | Msa1271320:CDS |
| AAGTTGGTACTCTACCCAAG+TGG | 0.750027 | 8_3:+4862416 | Msa1271320:CDS |
| ACGTTGACCTCCCAACCACG+AGG | 0.750911 | 8_3:-4862506 | None:intergenic |
| GATAAAGAGAAACTTCCTCG+TGG | 0.768099 | 8_3:+4862491 | Msa1271320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTTAGATATAATAATATA+AGG | - | chr8_3:4863228-4863247 | None:intergenic | 10.0% |
| !! | TCTATACTAATAATATTTAC+AGG | - | chr8_3:4861887-4861906 | None:intergenic | 15.0% |
| !! | AATATTATTAGTATAGAGAT+AGG | + | chr8_3:4861890-4861909 | Msa1271320:intron | 15.0% |
| !! | TAGAAGAAAAAAAAAAGTAA+GGG | - | chr8_3:4862187-4862206 | None:intergenic | 15.0% |
| !! | ATAGAAGAAAAAAAAAAGTA+AGG | - | chr8_3:4862188-4862207 | None:intergenic | 15.0% |
| !!! | AATTTTAACAAAACCAAAAT+AGG | - | chr8_3:4863254-4863273 | None:intergenic | 15.0% |
| !! | ATTGTTATATATGTGTAAAT+AGG | + | chr8_3:4863365-4863384 | Msa1271320:intron | 15.0% |
| !! | TAAAAACGATAAAATAATCT+TGG | + | chr8_3:4863797-4863816 | Msa1271320:CDS | 15.0% |
| !!! | TCCATTTTTTCAATTTTGAA+CGG | - | chr8_3:4861942-4861961 | None:intergenic | 20.0% |
| !! | AGAAGAAAAAAAAAAGTAAG+GGG | - | chr8_3:4862186-4862205 | None:intergenic | 20.0% |
| !!! | TTATTCTATGTTTTGATAGT+AGG | + | chr8_3:4862297-4862316 | Msa1271320:intron | 20.0% |
| !! | AAATATATTAGAAGCTAGAT+AGG | - | chr8_3:4862342-4862361 | None:intergenic | 20.0% |
| !!! | TATCTAACAAATTCCTATTT+TGG | + | chr8_3:4863238-4863257 | Msa1271320:intron | 20.0% |
| !!! | TAATTAAGTGTGATAATGAA+TGG | - | chr8_3:4863962-4863981 | None:intergenic | 20.0% |
| !! | TATCTAACAAATTCTTGATT+TGG | + | chr8_3:4863989-4864008 | Msa1271320:intron | 20.0% |
| !! | TGTATTATATATGCAATGAT+CGG | + | chr8_3:4864071-4864090 | Msa1271320:intron | 20.0% |
| !! | TGCATATATAATAAATTGCA+AGG | - | chr8_3:4864199-4864218 | None:intergenic | 20.0% |
| !! | TTGCAATTTATTATATATGC+AGG | + | chr8_3:4864198-4864217 | Msa1271320:intron | 20.0% |
| ! | ATTTAACACTGAAGAAAAGA+AGG | - | chr8_3:4861817-4861836 | None:intergenic | 25.0% |
| ! | ACCGTTCAAAATTGAAAAAA+TGG | + | chr8_3:4861938-4861957 | Msa1271320:intron | 25.0% |
| ! | TGAAATACCTACATTTATAC+AGG | - | chr8_3:4862022-4862041 | None:intergenic | 25.0% |
| ! | ATCTTAAACAAATAATCAGC+TGG | - | chr8_3:4862066-4862085 | None:intergenic | 25.0% |
| ! | GAAGAAAAAAAAAAGTAAGG+GGG | - | chr8_3:4862185-4862204 | None:intergenic | 25.0% |
| ! | CATGTATATTAATATGAGCT+AGG | + | chr8_3:4862234-4862253 | Msa1271320:intron | 25.0% |
| ! | GTTGCTATATTATTTATTGC+AGG | + | chr8_3:4862393-4862412 | Msa1271320:intron | 25.0% |
| ! | TATTATTTATTGCAGGAAGT+TGG | + | chr8_3:4862400-4862419 | Msa1271320:intron | 25.0% |
| !!! | TTCTTTTTGATTTACCACTT+GGG | - | chr8_3:4862433-4862452 | None:intergenic | 25.0% |
| !!! | TTTCTTTTTGATTTACCACT+TGG | - | chr8_3:4862434-4862453 | None:intergenic | 25.0% |
| ! | AGTGGTAAATCAAAAAGAAA+CGG | + | chr8_3:4862434-4862453 | Msa1271320:CDS | 25.0% |
| ! | TATGTGAATTCAATTTGAAG+TGG | - | chr8_3:4862645-4862664 | None:intergenic | 25.0% |
| ! | TTAATGAAATGAAACCTGAA+TGG | + | chr8_3:4862754-4862773 | Msa1271320:CDS | 25.0% |
| ! | TAATGAAATGAAACCTGAAT+GGG | + | chr8_3:4862755-4862774 | Msa1271320:CDS | 25.0% |
| ! | ATGTGTAAATAGGAATTTAC+TGG | + | chr8_3:4863375-4863394 | Msa1271320:intron | 25.0% |
| ! | AATCAACATTATGAGAAAAC+AGG | + | chr8_3:4863538-4863557 | Msa1271320:CDS | 25.0% |
| ! | AACTCTATGAAGCAAAAAAT+GGG | + | chr8_3:4863769-4863788 | Msa1271320:CDS | 25.0% |
| ! | AAACGATAAAATAATCTTGG+AGG | + | chr8_3:4863800-4863819 | Msa1271320:CDS | 25.0% |
| ! | TAGCATATGAAAAATTCACT+TGG | + | chr8_3:4863859-4863878 | Msa1271320:CDS | 25.0% |
| ! | TTTCTTACCAAATAGTATAG+TGG | - | chr8_3:4864141-4864160 | None:intergenic | 25.0% |
| ! | TATAAATATCACGAGAAAAC+AGG | + | chr8_3:4864398-4864417 | Msa1271320:CDS | 25.0% |
| AAAATTCGCTCAAAAATGAC+GGG | - | chr8_3:4861855-4861874 | None:intergenic | 30.0% | |
| CAAAATTCGCTCAAAAATGA+CGG | - | chr8_3:4861856-4861875 | None:intergenic | 30.0% | |
| ! | TTCAATTTTGAACGGTAGTT+TGG | - | chr8_3:4861934-4861953 | None:intergenic | 30.0% |
| TCATCTACCTGTATAAATGT+AGG | + | chr8_3:4862012-4862031 | Msa1271320:intron | 30.0% | |
| TTAAACAAATAATCAGCTGG+TGG | - | chr8_3:4862063-4862082 | None:intergenic | 30.0% | |
| ! | TAAGATCCAATCATTTTCCT+TGG | + | chr8_3:4862080-4862099 | Msa1271320:CDS | 30.0% |
| !!! | TTAGTCTACGTTTTGAAAGA+AGG | + | chr8_3:4862266-4862285 | Msa1271320:intron | 30.0% |
| AAATCAAAAAGAAACGGCAA+AGG | + | chr8_3:4862440-4862459 | Msa1271320:CDS | 30.0% | |
| AACAATTATTTGACCATCCA+AGG | + | chr8_3:4862563-4862582 | Msa1271320:CDS | 30.0% | |
| TTCACATACAAGTAAAACTG+TGG | + | chr8_3:4862657-4862676 | Msa1271320:intron | 30.0% | |
| AATGAAATGAAACCTGAATG+GGG | + | chr8_3:4862756-4862775 | Msa1271320:CDS | 30.0% | |
| TGATCACTTAATTTCATTCG+AGG | + | chr8_3:4862782-4862801 | Msa1271320:CDS | 30.0% | |
| GAACTCTTTGATTCATGTAA+TGG | + | chr8_3:4862804-4862823 | Msa1271320:CDS | 30.0% | |
| !! | ACTTCAGAACTTGTTAACAT+GGG | + | chr8_3:4863127-4863146 | Msa1271320:CDS | 30.0% |
| AATAATATAAGGATGACGAG+AGG | - | chr8_3:4863217-4863236 | None:intergenic | 30.0% | |
| !!! | TATCATCGCTTCTTATTTTG+CGG | + | chr8_3:4863574-4863593 | Msa1271320:intron | 30.0% |
| TTTGTGCTTCAAATAAGCAA+AGG | + | chr8_3:4863718-4863737 | Msa1271320:CDS | 30.0% | |
| TTGTGCTTCAAATAAGCAAA+GGG | + | chr8_3:4863719-4863738 | Msa1271320:CDS | 30.0% | |
| GAACTCTATGAAGCAAAAAA+TGG | + | chr8_3:4863768-4863787 | Msa1271320:CDS | 30.0% | |
| ACTAAAGATGTCCATAATCA+TGG | + | chr8_3:4863830-4863849 | Msa1271320:CDS | 30.0% | |
| ! | GTGAATTTTTCATATGCTAG+AGG | - | chr8_3:4863858-4863877 | None:intergenic | 30.0% |
| AATTTGTCAAAGTCCGAAAA+TGG | + | chr8_3:4863891-4863910 | Msa1271320:CDS | 30.0% | |
| !! | CACTTTAAAATGAATAACCG+TGG | - | chr8_3:4864109-4864128 | None:intergenic | 30.0% |
| ATTCTAGCCACTATACTATT+TGG | + | chr8_3:4864131-4864150 | Msa1271320:intron | 30.0% | |
| TTATATATGCAGGAATTTCG+AGG | + | chr8_3:4864208-4864227 | Msa1271320:intron | 30.0% | |
| AATTTCGAGGTTAATACGAA+AGG | + | chr8_3:4864221-4864240 | Msa1271320:intron | 30.0% | |
| TCTGATACTTTCAGGAAAAA+AGG | - | chr8_3:4864308-4864327 | None:intergenic | 30.0% | |
| TAAAGACGATGCTATAATCA+TGG | + | chr8_3:4864599-4864618 | Msa1271320:CDS | 30.0% | |
| TGAAATCTCTAACATATCCA+TGG | + | chr8_3:4864626-4864645 | Msa1271320:CDS | 30.0% | |
| !!! | GAGTCAAATGTTTTTCAAGC+TGG | + | chr8_3:4862129-4862148 | Msa1271320:CDS | 35.0% |
| !!! | TCAAATGTTTTTCAAGCTGG+TGG | + | chr8_3:4862132-4862151 | Msa1271320:CDS | 35.0% |
| TCTCTTTATCTGCAATTGCT+AGG | - | chr8_3:4862481-4862500 | None:intergenic | 35.0% | |
| ATGTTACGTTATACCTTGGA+TGG | - | chr8_3:4862579-4862598 | None:intergenic | 35.0% | |
| TCAGATGTTACGTTATACCT+TGG | - | chr8_3:4862583-4862602 | None:intergenic | 35.0% | |
| TTGATTACTGTAGATGCTGA+TGG | + | chr8_3:4862717-4862736 | Msa1271320:intron | 35.0% | |
| CACATCTATCTTCTTCATCA+AGG | - | chr8_3:4862833-4862852 | None:intergenic | 35.0% | |
| GAAGAAGATAGATGTGTGTT+TGG | + | chr8_3:4862837-4862856 | Msa1271320:CDS | 35.0% | |
| !! | GACTTCAGAACTTGTTAACA+TGG | + | chr8_3:4863126-4863145 | Msa1271320:CDS | 35.0% |
| ! | AGGAATTTACTGGTTATTCC+TGG | + | chr8_3:4863385-4863404 | Msa1271320:intron | 35.0% |
| ! | AATTTACTGGTTATTCCTGG+AGG | + | chr8_3:4863388-4863407 | Msa1271320:CDS | 35.0% |
| GCATTCACTGTTGTATTTGA+TGG | - | chr8_3:4863484-4863503 | None:intergenic | 35.0% | |
| !! | CATAATGTTGATTCTGAAGC+TGG | - | chr8_3:4863531-4863550 | None:intergenic | 35.0% |
| !!! | TTTTTTGACACACTGGTCTT+AGG | + | chr8_3:4863601-4863620 | Msa1271320:intron | 35.0% |
| !!! | TTTTTGACACACTGGTCTTA+GGG | + | chr8_3:4863602-4863621 | Msa1271320:intron | 35.0% |
| ! | CTTATTTGAAGCACAAAACG+AGG | - | chr8_3:4863715-4863734 | None:intergenic | 35.0% |
| TGTGCTTCAAATAAGCAAAG+GGG | + | chr8_3:4863720-4863739 | Msa1271320:CDS | 35.0% | |
| TGATTATACCAATGTCTCTC+AGG | - | chr8_3:4863938-4863957 | None:intergenic | 35.0% | |
| TACCAACTGAGTTATACTCA+CGG | - | chr8_3:4864042-4864061 | None:intergenic | 35.0% | |
| ! | TGAGTATAACTCAGTTGGTA+GGG | + | chr8_3:4864042-4864061 | Msa1271320:intron | 35.0% |
| GAAGCAGTTTCAAAAACGAA+AGG | + | chr8_3:4864248-4864267 | Msa1271320:CDS | 35.0% | |
| GTTTCAAAAACGAAAGGAGT+TGG | + | chr8_3:4864254-4864273 | Msa1271320:CDS | 35.0% | |
| ! | TTTTCGTCTCTGATACTTTC+AGG | - | chr8_3:4864316-4864335 | None:intergenic | 35.0% |
| CGTGATATTTATAACGAAGC+TGG | - | chr8_3:4864391-4864410 | None:intergenic | 35.0% | |
| TGCTAGATTGAGTTCACTTA+GGG | - | chr8_3:4864565-4864584 | None:intergenic | 35.0% | |
| GAACTCAATCTAGCAGAAAA+TGG | + | chr8_3:4864570-4864589 | Msa1271320:CDS | 35.0% | |
| TTCCTTGGCTGTGGAAAAAA+AGG | + | chr8_3:4862095-4862114 | Msa1271320:CDS | 40.0% | |
| GATAAAGAGAAACTTCCTCG+TGG | + | chr8_3:4862491-4862510 | Msa1271320:CDS | 40.0% | |
| AAGTGATCAAAACCCCATTC+AGG | - | chr8_3:4862771-4862790 | None:intergenic | 40.0% | |
| ! | GTTTTTGTGATTCGCCATTC+TGG | + | chr8_3:4862867-4862886 | Msa1271320:CDS | 40.0% |
| ! | TGATTCGCCATTCTGGAAAT+TGG | + | chr8_3:4862874-4862893 | Msa1271320:CDS | 40.0% |
| ! | GATTCGCCATTCTGGAAATT+GGG | + | chr8_3:4862875-4862894 | Msa1271320:CDS | 40.0% |
| AAGTTGCCCAATTTCCAGAA+TGG | - | chr8_3:4862884-4862903 | None:intergenic | 40.0% | |
| CAAGTAAAGGAGCCATATGT+TGG | - | chr8_3:4863104-4863123 | None:intergenic | 40.0% | |
| CAACATATGGCTCCTTTACT+TGG | + | chr8_3:4863102-4863121 | Msa1271320:CDS | 40.0% | |
| !! | GTTCTGAAGTCTCCAAGTAA+AGG | - | chr8_3:4863117-4863136 | None:intergenic | 40.0% |
| ATCTCCAAAACCTTCACTGT+TGG | + | chr8_3:4863167-4863186 | Msa1271320:CDS | 40.0% | |
| ! | ATCACCAACAGTGAAGGTTT+TGG | - | chr8_3:4863174-4863193 | None:intergenic | 40.0% |
| CCTGGAGGAAATTCTATAGA+CGG | + | chr8_3:4863403-4863422 | Msa1271320:CDS | 40.0% | |
| CTGGAGGAAATTCTATAGAC+GGG | + | chr8_3:4863404-4863423 | Msa1271320:CDS | 40.0% | |
| AATTCTATAGACGGGATCAG+TGG | + | chr8_3:4863412-4863431 | Msa1271320:CDS | 40.0% | |
| TTTCACAATCTGTTAGCTGC+AGG | - | chr8_3:4863456-4863475 | None:intergenic | 40.0% | |
| TGCAGCTAACAGATTGTGAA+AGG | + | chr8_3:4863455-4863474 | Msa1271320:CDS | 40.0% | |
| !!! | CGGACATTTTTTTGACACAC+TGG | + | chr8_3:4863594-4863613 | Msa1271320:intron | 40.0% |
| TGCTAGAGGTTCCATGATTA+TGG | - | chr8_3:4863844-4863863 | None:intergenic | 40.0% | |
| !! | AGTTTCGCTTGAGCCATTTT+CGG | - | chr8_3:4863907-4863926 | None:intergenic | 40.0% |
| ACCAACTGAGTTATACTCAC+GGG | - | chr8_3:4864041-4864060 | None:intergenic | 40.0% | |
| GTGAGTATAACTCAGTTGGT+AGG | + | chr8_3:4864041-4864060 | Msa1271320:intron | 40.0% | |
| !! | GAGTATAACTCAGTTGGTAG+GGG | + | chr8_3:4864043-4864062 | Msa1271320:intron | 40.0% |
| !! | AGTATAACTCAGTTGGTAGG+GGG | + | chr8_3:4864044-4864063 | Msa1271320:intron | 40.0% |
| TAGTGATCTCAGACTCACAA+TGG | + | chr8_3:4864520-4864539 | Msa1271320:CDS | 40.0% | |
| CTGCTAGATTGAGTTCACTT+AGG | - | chr8_3:4864566-4864585 | None:intergenic | 40.0% | |
| AGACGATGCTATAATCATGG+AGG | + | chr8_3:4864602-4864621 | Msa1271320:CDS | 40.0% | |
| ! | ATTCGCTCAAAAATGACGGG+TGG | - | chr8_3:4861852-4861871 | None:intergenic | 45.0% |
| CCACAGCCAAGGAAAATGAT+TGG | - | chr8_3:4862089-4862108 | None:intergenic | 45.0% | |
| ! | CCAATCATTTTCCTTGGCTG+TGG | + | chr8_3:4862086-4862105 | Msa1271320:CDS | 45.0% |
| !!! | CACCTTTTTTTCCACAGCCA+AGG | - | chr8_3:4862100-4862119 | None:intergenic | 45.0% |
| ! | TTCAAGCTGGTGGATACACA+TGG | + | chr8_3:4862142-4862161 | Msa1271320:CDS | 45.0% |
| !! | AAGTTGGTACTCTACCCAAG+TGG | + | chr8_3:4862416-4862435 | Msa1271320:CDS | 45.0% |
| AAGAGAAACTTCCTCGTGGT+TGG | + | chr8_3:4862495-4862514 | Msa1271320:CDS | 45.0% | |
| AGAGAAACTTCCTCGTGGTT+GGG | + | chr8_3:4862496-4862515 | Msa1271320:CDS | 45.0% | |
| ! | TGGGCAACTTTTGATGTGTC+CGG | + | chr8_3:4862894-4862913 | Msa1271320:CDS | 45.0% |
| TATCTGATGCTTGCCATCGT+CGG | - | chr8_3:4862991-4863010 | None:intergenic | 45.0% | |
| GATGGCAAGCATCAGATATC+TGG | + | chr8_3:4862993-4863012 | Msa1271320:CDS | 45.0% | |
| !!! | ATTTTTAGGTTTGCCACCGC+CGG | - | chr8_3:4863027-4863046 | None:intergenic | 45.0% |
| CGGTGGCAAACCTAAAAATC+CGG | + | chr8_3:4863028-4863047 | Msa1271320:CDS | 45.0% | |
| GGTGGCAAACCTAAAAATCC+GGG | + | chr8_3:4863029-4863048 | Msa1271320:CDS | 45.0% | |
| GTAAAGGAGCCATATGTTGG+AGG | - | chr8_3:4863101-4863120 | None:intergenic | 45.0% | |
| !!! | GGTTTTGGAGATCACCACAT+CGG | - | chr8_3:4863159-4863178 | None:intergenic | 45.0% |
| CTCTCTATCACCAACAGTGA+AGG | - | chr8_3:4863180-4863199 | None:intergenic | 45.0% | |
| !! | TCACTGTTGGTGATAGAGAG+TGG | + | chr8_3:4863180-4863199 | Msa1271320:intron | 45.0% |
| CCGTCTATAGAATTTCCTCC+AGG | - | chr8_3:4863406-4863425 | None:intergenic | 45.0% | |
| TGGCTCAAGCGAAACTATAG+TGG | + | chr8_3:4863911-4863930 | Msa1271320:CDS | 45.0% | |
| ATAGTGGTCCTGAGAGACAT+TGG | + | chr8_3:4863927-4863946 | Msa1271320:CDS | 45.0% | |
| CCAACTGAGTTATACTCACG+GGG | - | chr8_3:4864040-4864059 | None:intergenic | 45.0% | |
| ATCGGAAACTCGAGATTCCA+CGG | + | chr8_3:4864089-4864108 | Msa1271320:intron | 45.0% | |
| !!! | ATATTATTATTTGTTTTTTT+TGG | + | chr8_3:4863326-4863345 | Msa1271320:intron | 5.0% |
| !! | CGAGAACTTGAGGTTGGCTT+AGG | - | chr8_3:4861775-4861794 | None:intergenic | 50.0% |
| AACACCACAGCGAGAACTTG+AGG | - | chr8_3:4861785-4861804 | None:intergenic | 50.0% | |
| TCAAGTTCTCGCTGTGGTGT+TGG | + | chr8_3:4861784-4861803 | Msa1271320:CDS | 50.0% | |
| GACAAGCCTCCAACAACATC+TGG | + | chr8_3:4862918-4862937 | Msa1271320:CDS | 50.0% | |
| TGTTAGAGGTTTGCCGCTGT+CGG | - | chr8_3:4862952-4862971 | None:intergenic | 50.0% | |
| AGCGGCAAACCTCTAACAAC+TGG | + | chr8_3:4862954-4862973 | Msa1271320:CDS | 50.0% | |
| TTTGGAGATCACCACATCGG+AGG | - | chr8_3:4863156-4863175 | None:intergenic | 50.0% | |
| CCCCGTGAGTATAACTCAGT+TGG | + | chr8_3:4864037-4864056 | Msa1271320:intron | 50.0% | |
| GTTGGTGCAGACAGTATCGT+AGG | + | chr8_3:4864272-4864291 | Msa1271320:CDS | 50.0% | |
| CCACAGCGAGAACTTGAGGT+TGG | - | chr8_3:4861781-4861800 | None:intergenic | 55.0% | |
| CCAACCTCAAGTTCTCGCTG+TGG | + | chr8_3:4861778-4861797 | Msa1271320:CDS | 55.0% | |
| GAAACTTCCTCGTGGTTGGG+AGG | + | chr8_3:4862499-4862518 | Msa1271320:CDS | 55.0% | |
| TGTTGTTGGAGGCTTGTCGC+CGG | - | chr8_3:4862916-4862935 | None:intergenic | 55.0% | |
| GAGGAGCCAGATGTTGTTGG+AGG | - | chr8_3:4862927-4862946 | None:intergenic | 55.0% | |
| GTGGAGGAGCCAGATGTTGT+TGG | - | chr8_3:4862930-4862949 | None:intergenic | 55.0% | |
| GTGGAGGAGCCAGTTGTTAG+AGG | - | chr8_3:4862966-4862985 | None:intergenic | 55.0% | |
| ! | CAGATATCTGGCTCCTCCAC+CGG | + | chr8_3:4863005-4863024 | Msa1271320:CDS | 55.0% |
| ! | GTGGAGGAGCCCGGATTTTT+AGG | - | chr8_3:4863041-4863060 | None:intergenic | 55.0% |
| AAAAATCCGGGCTCCTCCAC+TGG | + | chr8_3:4863041-4863060 | Msa1271320:CDS | 55.0% | |
| CAAGCCTCCTATGGGACCTT+CGG | + | chr8_3:4863070-4863089 | Msa1271320:CDS | 55.0% | |
| TATGTTGGAGGCTCCACCGA+AGG | - | chr8_3:4863089-4863108 | None:intergenic | 55.0% | |
| TCGGTGGAGCCTCCAACATA+TGG | + | chr8_3:4863089-4863108 | Msa1271320:CDS | 55.0% | |
| ACGTTGACCTCCCAACCACG+AGG | - | chr8_3:4862509-4862528 | None:intergenic | 60.0% | |
| TAGAGGTTTGCCGCTGTCGG+TGG | - | chr8_3:4862949-4862968 | None:intergenic | 60.0% | |
| ATGCTTGCCATCGTCGGTGG+TGG | - | chr8_3:4862985-4863004 | None:intergenic | 60.0% | |
| CTGATGCTTGCCATCGTCGG+TGG | - | chr8_3:4862988-4863007 | None:intergenic | 60.0% | |
| ! | ATATCTGGCTCCTCCACCGG+CGG | + | chr8_3:4863008-4863027 | Msa1271320:CDS | 60.0% |
| ! | TTTAGGTTTGCCACCGCCGG+TGG | - | chr8_3:4863024-4863043 | None:intergenic | 60.0% |
| TGGTGGCAGCAAGCCTCCTA+TGG | + | chr8_3:4863061-4863080 | Msa1271320:CDS | 60.0% | |
| GGTGGCAGCAAGCCTCCTAT+GGG | + | chr8_3:4863062-4863081 | Msa1271320:CDS | 60.0% | |
| TCCACCGAAGGTCCCATAGG+AGG | - | chr8_3:4863077-4863096 | None:intergenic | 60.0% | |
| AACATGGGTCGCCTCCGATG+TGG | + | chr8_3:4863142-4863161 | Msa1271320:CDS | 60.0% | |
| ! | TCTGGCTCCTCCACCGACAG+CGG | + | chr8_3:4862936-4862955 | Msa1271320:CDS | 65.0% |
| AGGTTTGCCGCTGTCGGTGG+AGG | - | chr8_3:4862946-4862965 | None:intergenic | 65.0% | |
| ! | CTTGCCATCGTCGGTGGTGG+AGG | - | chr8_3:4862982-4863001 | None:intergenic | 65.0% |
| AATCCGGGCTCCTCCACTGG+TGG | + | chr8_3:4863044-4863063 | Msa1271320:CDS | 65.0% | |
| !! | AGGCTTGCTGCCACCAGTGG+AGG | - | chr8_3:4863057-4863076 | None:intergenic | 65.0% |
| !! | AGGAGGCTTGCTGCCACCAG+TGG | - | chr8_3:4863060-4863079 | None:intergenic | 65.0% |
| GCCTCCTATGGGACCTTCGG+TGG | + | chr8_3:4863073-4863092 | Msa1271320:CDS | 65.0% | |
| GGCTCCACCGAAGGTCCCAT+AGG | - | chr8_3:4863080-4863099 | None:intergenic | 65.0% | |
| GGCTCCTCCACCACCGACGA+TGG | + | chr8_3:4862975-4862994 | Msa1271320:CDS | 70.0% | |
| AGGTTTGCCACCGCCGGTGG+AGG | - | chr8_3:4863021-4863040 | None:intergenic | 70.0% | |
| CTGCCACCAGTGGAGGAGCC+CGG | - | chr8_3:4863050-4863069 | None:intergenic | 70.0% | |
| ! | TCTGGCTCCTCCACCGGCGG+TGG | + | chr8_3:4863011-4863030 | Msa1271320:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 4861751 | 4864653 | 4861751 | ID=Msa1271320;Name=Msa1271320 |
| chr8_3 | mRNA | 4861751 | 4864653 | 4861751 | ID=Msa1271320-mRNA-1;Parent=Msa1271320;Name=Msa1271320-mRNA-1;_AED=0.09;_eAED=0.17;_QI=0|0|0|0.87|0.57|0.75|8|0|520 |
| chr8_3 | exon | 4861751 | 4861805 | 4861751 | ID=Msa1271320-mRNA-1:exon:1642;Parent=Msa1271320-mRNA-1 |
| chr8_3 | exon | 4862034 | 4862163 | 4862034 | ID=Msa1271320-mRNA-1:exon:1643;Parent=Msa1271320-mRNA-1 |
| chr8_3 | exon | 4862415 | 4862584 | 4862415 | ID=Msa1271320-mRNA-1:exon:1644;Parent=Msa1271320-mRNA-1 |
| chr8_3 | exon | 4862730 | 4863198 | 4862730 | ID=Msa1271320-mRNA-1:exon:1645;Parent=Msa1271320-mRNA-1 |
| chr8_3 | exon | 4863387 | 4863559 | 4863387 | ID=Msa1271320-mRNA-1:exon:1646;Parent=Msa1271320-mRNA-1 |
| chr8_3 | exon | 4863706 | 4863948 | 4863706 | ID=Msa1271320-mRNA-1:exon:1647;Parent=Msa1271320-mRNA-1 |
| chr8_3 | exon | 4864243 | 4864419 | 4864243 | ID=Msa1271320-mRNA-1:exon:1648;Parent=Msa1271320-mRNA-1 |
| chr8_3 | exon | 4864508 | 4864653 | 4864508 | ID=Msa1271320-mRNA-1:exon:1649;Parent=Msa1271320-mRNA-1 |
| chr8_3 | CDS | 4861751 | 4861805 | 4861751 | ID=Msa1271320-mRNA-1:cds;Parent=Msa1271320-mRNA-1 |
| chr8_3 | CDS | 4862034 | 4862163 | 4862034 | ID=Msa1271320-mRNA-1:cds;Parent=Msa1271320-mRNA-1 |
| chr8_3 | CDS | 4862415 | 4862584 | 4862415 | ID=Msa1271320-mRNA-1:cds;Parent=Msa1271320-mRNA-1 |
| chr8_3 | CDS | 4862730 | 4863198 | 4862730 | ID=Msa1271320-mRNA-1:cds;Parent=Msa1271320-mRNA-1 |
| chr8_3 | CDS | 4863387 | 4863559 | 4863387 | ID=Msa1271320-mRNA-1:cds;Parent=Msa1271320-mRNA-1 |
| chr8_3 | CDS | 4863706 | 4863948 | 4863706 | ID=Msa1271320-mRNA-1:cds;Parent=Msa1271320-mRNA-1 |
| chr8_3 | CDS | 4864243 | 4864419 | 4864243 | ID=Msa1271320-mRNA-1:cds;Parent=Msa1271320-mRNA-1 |
| chr8_3 | CDS | 4864508 | 4864653 | 4864508 | ID=Msa1271320-mRNA-1:cds;Parent=Msa1271320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
