AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1308240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1308240 MtrunA17_Chr8g0334821 75.000 532 86 2 1 532 1 485 0.0 783
Msa1308240 MtrunA17_Chr4g0069161 31.148 366 184 7 23 385 7 307 9.69e-43 154
Msa1308240 MtrunA17_Chr5g0439971 33.117 154 93 4 236 385 43 190 1.97e-18 89.4
Msa1308240 MtrunA17_Chr5g0439971 32.026 153 92 5 30 182 56 196 2.23e-16 82.8
Msa1308240 MtrunA17_Chr3g0119031 33.103 145 89 4 242 385 48 185 2.03e-17 86.3
Msa1308240 MtrunA17_Chr3g0119031 28.859 149 95 4 30 178 51 188 2.66e-14 76.3
Msa1308240 MtrunA17_Chr5g0443161 35.766 137 78 5 33 169 31 157 2.42e-16 79.0
Msa1308240 MtrunA17_Chr5g0443161 25.625 160 112 4 222 379 3 157 3.93e-13 69.7
Msa1308240 MtrunA17_Chr1g0166871 27.841 176 110 7 36 204 14 179 4.46e-16 79.3
Msa1308240 MtrunA17_Chr1g0170261 31.250 128 80 3 52 179 72 191 2.73e-15 79.3
Msa1308240 MtrunA17_Chr1g0170261 31.159 138 87 3 243 379 51 181 3.87e-14 75.9
Msa1308240 MtrunA17_Chr5g0443194 35.088 114 66 3 56 169 37 142 4.25e-12 68.6
Msa1308240 MtrunA17_Chr3g0137501 21.429 406 229 13 30 401 233 582 5.55e-12 68.9
Msa1308240 MtrunA17_Chr3g0137501 24.242 165 113 4 23 181 394 552 6.80e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1308240 AT3G17380.1 47.973 148 73 2 24 171 10 153 1.78e-36 138
Msa1308240 AT3G17380.1 30.070 143 91 4 29 171 169 302 2.21e-11 65.5
Msa1308240 AT5G26290.1 45.695 151 78 3 23 173 42 188 3.77e-35 135
Msa1308240 AT5G26290.1 25.000 284 164 11 270 531 74 330 4.54e-13 70.9
Msa1308240 AT5G26280.1 44.079 152 81 3 22 173 48 195 2.01e-34 133
Msa1308240 AT5G26280.3 44.079 152 81 3 22 173 67 214 3.80e-34 133
Msa1308240 AT5G26260.1 43.919 148 79 3 25 172 52 195 3.17e-33 130
Msa1308240 AT5G26260.1 26.786 280 171 10 270 531 82 345 1.54e-12 69.3
Msa1308240 AT5G26300.1 43.949 157 83 4 17 173 43 194 3.72e-33 129
Msa1308240 AT2G04170.4 45.070 142 74 3 29 170 3 140 3.76e-30 120
Msa1308240 AT2G04170.3 45.070 142 74 3 29 170 3 140 3.76e-30 120
Msa1308240 AT2G04170.6 45.070 142 74 3 29 170 85 222 1.92e-29 120
Msa1308240 AT2G04170.2 45.070 142 74 3 29 170 125 262 3.03e-29 120
Msa1308240 AT2G04170.1 45.070 142 74 3 29 170 125 262 3.03e-29 120
Msa1308240 AT2G04170.5 45.070 142 74 3 29 170 125 262 3.70e-29 119
Msa1308240 AT2G04170.7 45.070 142 74 3 29 170 125 262 5.18e-29 117
Msa1308240 AT5G26320.1 37.342 158 93 4 17 172 43 196 2.96e-27 113
Msa1308240 AT3G20370.1 37.500 168 97 5 3 169 58 218 1.93e-25 108
Msa1308240 AT3G20370.1 22.185 302 204 9 246 530 85 372 2.97e-12 68.9
Msa1308240 AT3G20370.2 37.500 168 97 5 3 169 36 196 2.51e-25 107
Msa1308240 AT3G20370.2 22.185 302 204 9 246 530 63 350 2.01e-12 69.3
Msa1308240 AT2G04190.1 36.709 158 95 4 15 171 101 254 3.69e-24 105
Msa1308240 AT2G04190.1 24.910 277 166 10 277 531 149 405 6.23e-12 68.2
Msa1308240 AT4G09770.5 36.000 150 89 4 24 173 26 168 3.90e-24 102
Msa1308240 AT4G09770.3 36.552 145 85 4 29 173 5 142 4.07e-24 102
Msa1308240 AT4G09770.2 36.552 145 85 4 29 173 5 142 5.15e-24 102
Msa1308240 AT4G09770.1 36.552 145 85 4 29 173 5 142 5.15e-24 102
Msa1308240 AT4G09770.4 36.000 150 89 4 24 173 26 168 5.93e-24 103
Msa1308240 AT3G20360.1 34.161 161 103 2 29 188 62 220 1.46e-23 102
Msa1308240 AT2G15710.1 39.873 158 85 5 29 182 94 245 2.27e-23 102
Msa1308240 AT3G28220.1 24.930 357 197 10 29 383 76 363 3.54e-23 101
Msa1308240 AT3G22080.1 34.395 157 97 3 26 178 12 166 1.13e-22 99.4
Msa1308240 AT4G09780.2 36.000 150 90 4 24 173 53 196 1.14e-22 100
Msa1308240 AT4G09780.1 26.020 392 224 11 24 409 53 384 1.28e-22 100
Msa1308240 AT5G26280.2 36.184 152 70 4 22 173 48 172 7.78e-22 97.1
Msa1308240 AT1G69660.1 25.090 279 142 7 101 379 8 219 3.75e-18 84.3
Msa1308240 AT3G20380.1 31.788 151 100 2 24 174 77 224 6.49e-17 83.2
Msa1308240 AT1G65050.2 35.659 129 73 4 29 157 15 133 4.93e-16 76.3
Msa1308240 AT1G65050.1 35.659 129 73 4 29 157 15 133 4.93e-16 76.3
Msa1308240 AT3G22085.1 32.450 151 79 4 29 178 14 142 4.99e-16 79.3
Msa1308240 AT3G11910.4 28.049 164 111 3 223 385 26 183 2.61e-15 79.7
Msa1308240 AT3G11910.4 31.250 128 80 3 52 179 68 187 2.42e-14 76.6
Msa1308240 AT3G11910.2 28.049 164 111 3 223 385 26 183 2.61e-15 79.7
Msa1308240 AT3G11910.2 31.250 128 80 3 52 179 68 187 2.42e-14 76.6
Msa1308240 AT3G11910.3 28.049 164 111 3 223 385 27 184 2.64e-15 79.7
Msa1308240 AT3G11910.3 31.250 128 80 3 52 179 69 188 2.44e-14 76.6
Msa1308240 AT3G11910.1 28.049 164 111 3 223 385 27 184 2.64e-15 79.7
Msa1308240 AT3G11910.1 31.250 128 80 3 52 179 69 188 2.44e-14 76.6
Msa1308240 AT1G58270.1 26.543 162 114 2 23 181 84 243 3.69e-15 77.8
Msa1308240 AT5G06600.3 30.000 150 94 4 30 179 51 189 7.51e-15 78.2
Msa1308240 AT5G06600.3 30.872 149 95 4 232 379 38 179 1.07e-14 77.8
Msa1308240 AT5G06600.1 30.000 150 94 4 30 179 51 189 8.69e-15 78.2
Msa1308240 AT5G06600.1 29.677 155 101 4 232 385 38 185 1.03e-14 77.8
Msa1308240 AT5G06600.2 30.000 150 94 4 30 179 50 188 8.84e-15 78.2
Msa1308240 AT5G06600.2 29.677 155 101 4 232 385 37 184 9.98e-15 78.2
Msa1308240 AT1G65150.2 28.000 150 98 3 23 172 9 148 8.18e-13 69.7
Msa1308240 AT1G65150.1 28.000 150 98 3 23 172 9 148 8.18e-13 69.7
Msa1308240 AT2G25320.3 20.755 371 217 12 19 380 391 693 1.91e-12 70.9
Msa1308240 AT2G25320.1 20.755 371 217 12 19 380 390 692 1.94e-12 70.9
Msa1308240 AT2G25320.2 21.294 371 215 12 19 380 391 693 2.03e-12 70.9
Msa1308240 AT1G69650.1 31.111 135 89 2 245 379 152 282 5.54e-12 67.0

Find 122 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTCGCCATTCTGGAAAT+TGG 0.166182 8_4:+4514375 Msa1308240:CDS
AATTGATTGTTCTATTTGAT+TGG 0.262034 8_4:-4515846 None:intergenic
TGCTAGAGGTTCCATGATTA+TGG 0.277744 8_4:-4515349 None:intergenic
GAACTCAATCTAGCAGAAAA+TGG 0.290019 8_4:+4516076 Msa1308240:CDS
ATGTGTAAATAGGAATTTAC+TGG 0.318596 8_4:+4514883 Msa1308240:intron
CAACATATGGCTCCTTTACT+TGG 0.321819 8_4:+4514603 Msa1308240:CDS
ATCACCAACAGTGAAGGTTT+TGG 0.327804 8_4:-4514672 None:intergenic
GCATTCACTGTTGTATTTGA+TGG 0.334498 8_4:-4514989 None:intergenic
ATCTACAATTGTCAGGTATA+AGG 0.341241 8_4:-4514043 None:intergenic
AGGAATTTACTGGTTATTCC+TGG 0.363144 8_4:+4514893 Msa1308240:intron
TGGTGGCAGCAAGCCTCCTA+TGG 0.376131 8_4:+4514562 Msa1308240:CDS
TAATGAAATGAAAACTGAAT+GGG 0.381095 8_4:+4514256 Msa1308240:CDS
GTGGAGGAGCCAGTTGTTAG+AGG 0.389719 8_4:-4514464 None:intergenic
GATGGCAAGCATCAGATATC+TGG 0.400348 8_4:+4514494 Msa1308240:CDS
GAAAATGCCGTTGTCTGATC+TGG 0.401267 8_4:+4511560 None:intergenic
TGCTAGATTGAGTTCACTTA+GGG 0.405522 8_4:-4516068 None:intergenic
CTGCTAGATTGAGTTCACTT+AGG 0.413708 8_4:-4516069 None:intergenic
ATCTGGAAAGAGTTTGTATC+CGG 0.415813 8_4:+4511577 Msa1308240:CDS
GATTCGCCATTCTGGAAATT+GGG 0.428445 8_4:+4514376 Msa1308240:CDS
CATAATGTTGATTCTGAAGC+TGG 0.430444 8_4:-4515036 None:intergenic
CTTGCCATCGTCGGTGGTGG+AGG 0.430846 8_4:-4514480 None:intergenic
TATAAATATCACGAGAAAAC+AGG 0.430852 8_4:+4515904 Msa1308240:CDS
CAAGCCTCCTATGGGACCTT+CGG 0.431498 8_4:+4514571 Msa1308240:CDS
GAAGAAGATACATGTGTGTT+TGG 0.431500 8_4:+4514338 Msa1308240:CDS
GACAAGCCTCCAACAACATC+TGG 0.444539 8_4:+4514419 Msa1308240:CDS
AGGCTTGCCGCTGTCGGTGG+AGG 0.446318 8_4:-4514444 None:intergenic
TAATATTTGTTGTAGGAAGT+TGG 0.453231 8_4:+4513972 Msa1308240:intron
AAAGAGGCTTTCTCGTGGTT+GGG 0.454200 8_4:+4514068 Msa1308240:CDS
TTCCTTGGCTGTGGACGAAA+AGG 0.458291 8_4:+4513785 Msa1308240:CDS
AGCGGCAAGCCTCTAACAAC+TGG 0.462023 8_4:+4514455 Msa1308240:CDS
CAAAGAGGCTTTCTCGTGGT+TGG 0.462473 8_4:+4514067 Msa1308240:CDS
AATCAACATTATGAGAAAAC+AGG 0.464814 8_4:+4515046 Msa1308240:CDS
ACTAAAGATGTCCATAATCA+TGG 0.467028 8_4:+4515338 Msa1308240:CDS
TTGTGCTTCAAATAAGCAAA+GGG 0.470033 8_4:+4515227 Msa1308240:CDS
AATAATTATTTGACCATCCA+AGG 0.470210 8_4:+4514135 Msa1308240:CDS
CGTGATATTTATAACGAAGC+TGG 0.472433 8_4:-4515894 None:intergenic
AGGTTTGCCACCACCGGTGG+AGG 0.473859 8_4:-4514519 None:intergenic
CTGCCACCAGTGGAGGAGCC+CGG 0.473945 8_4:-4514548 None:intergenic
TCTGGCTCCTCCACCGGTGG+TGG 0.474205 8_4:+4514512 Msa1308240:CDS
TGATTATACCAATGTCTCTC+AGG 0.477508 8_4:-4515441 None:intergenic
ATAGTTTCGCTTGAGCCATT+CGG 0.477659 8_4:-4515412 None:intergenic
TCTTTGTATCTACAATTGTC+AGG 0.480949 8_4:-4514050 None:intergenic
GTGGAGGAGCCAGATGTTGT+TGG 0.481372 8_4:-4514428 None:intergenic
TTAATGAAATGAAAACTGAA+TGG 0.482655 8_4:+4514255 Msa1308240:CDS
TAAAGACGATGCTATAATCA+TGG 0.486495 8_4:+4516105 Msa1308240:CDS
TTTCACAATCTGTTAGCTGC+AGG 0.493802 8_4:-4514961 None:intergenic
TCATCAACGTATCCATTACA+TGG 0.498278 8_4:-4514317 None:intergenic
TCGGTGGAGCCTCCAACATA+TGG 0.499115 8_4:+4514590 Msa1308240:CDS
AAACGATAAAATAATCTTGG+AGG 0.502461 8_4:+4515308 Msa1308240:CDS
CAAGTAAAGGAGCCATATGT+TGG 0.508456 8_4:-4514602 None:intergenic
GAGGAGCCAGATGTTGTTGG+AGG 0.509126 8_4:-4514425 None:intergenic
TAGAGGCTTGCCGCTGTCGG+TGG 0.510126 8_4:-4514447 None:intergenic
GGACTCTTTGATCCATGTAA+TGG 0.512696 8_4:+4514305 Msa1308240:CDS
GATGATATGTATACCTTGGA+TGG 0.518799 8_4:-4514148 None:intergenic
TGAGCAATTAATTTCATTGG+AGG 0.520514 8_4:+4514283 Msa1308240:CDS
AAGTTGCCCAATTTCCAGAA+TGG 0.525211 8_4:-4514382 None:intergenic
TTCAAGCTGGTGGATACTCA+TGG 0.530987 8_4:+4513832 Msa1308240:CDS
ATGCTTGCCATCGTCGGTGG+TGG 0.531952 8_4:-4514483 None:intergenic
AGGCTTGCTGCCACCAGTGG+AGG 0.534969 8_4:-4514555 None:intergenic
TGCAGCTAACAGATTGTGAA+AGG 0.535458 8_4:+4514963 Msa1308240:CDS
GGTGGCAGCAAGCCTCCTAT+GGG 0.537840 8_4:+4514563 Msa1308240:CDS
TGTTAGAGGCTTGCCGCTGT+CGG 0.539736 8_4:-4514450 None:intergenic
TGGCTCAAGCGAAACTATAG+TGG 0.540044 8_4:+4515417 Msa1308240:CDS
GCCTCCTATGGGACCTTCGG+TGG 0.540110 8_4:+4514574 Msa1308240:CDS
GGCTCCTCCACCACCGACGA+TGG 0.540723 8_4:+4514476 Msa1308240:CDS
ATCTTAAACAAGTAATCAGC+TGG 0.540985 8_4:-4513753 None:intergenic
CAGATATCTGGCTCCTCCAC+CGG 0.546293 8_4:+4514506 Msa1308240:CDS
CTGGAGGAAATTCTATAGAC+GGG 0.546671 8_4:+4514912 Msa1308240:CDS
TTATATATGCAGGAATTTCG+AGG 0.546858 8_4:+4515714 Msa1308240:intron
TTTGTGCTTCAAATAAGCAA+AGG 0.547081 8_4:+4515226 Msa1308240:CDS
GACTTCAGAACTTGTTAACA+TGG 0.548759 8_4:+4514627 Msa1308240:CDS
AATGAAATGAAAACTGAATG+GGG 0.549309 8_4:+4514257 Msa1308240:CDS
ATCTCCAAAACCTTCACTGT+TGG 0.550291 8_4:+4514668 Msa1308240:CDS
TCAAGTGCTCGTTGTGGTGT+TGG 0.553226 8_4:+4511609 Msa1308240:CDS
TGAAATCTCTAACATATCCA+TGG 0.555659 8_4:+4516132 Msa1308240:CDS
GTTCTGAAGTCTCCAAGTAA+AGG 0.556006 8_4:-4514615 None:intergenic
CCTGGAGGAAATTCTATAGA+CGG 0.557036 8_4:+4514911 Msa1308240:CDS
AGGAGGCTTGCTGCCACCAG+TGG 0.557206 8_4:-4514558 None:intergenic
GAGCAATTAATTTCATTGGA+GGG 0.558327 8_4:+4514284 Msa1308240:CDS
TGTTGTTGGAGGCTTGTCGC+CGG 0.558944 8_4:-4514414 None:intergenic
CTCTCTATCACCAACAGTGA+AGG 0.559204 8_4:-4514678 None:intergenic
CCACAGCCAAGGAAAACGAT+TGG 0.561150 8_4:-4513776 None:intergenic
CCGTCTATAGAATTTCCTCC+AGG 0.562853 8_4:-4514911 None:intergenic
GAGCACTTGAGGTTGGCTCC+CGG 0.579399 8_4:-4511596 None:intergenic
AAGTTGGTACTCTACCCAAA+TGG 0.581141 8_4:+4513988 Msa1308240:CDS
TATCTGATGCTTGCCATCGT+CGG 0.584579 8_4:-4514489 None:intergenic
TTTAGGTTTGCCACCACCGG+TGG 0.585843 8_4:-4514522 None:intergenic
CTTATTTGAAGCACAAAACG+AGG 0.587924 8_4:-4515220 None:intergenic
AATTTCGAGGTTAATACGAA+AGG 0.593225 8_4:+4515727 Msa1308240:CDS
GTAAAGGAGCCATATGTTGG+AGG 0.594906 8_4:-4514599 None:intergenic
ATAGTGGTCCTGAGAGACAT+TGG 0.596133 8_4:+4515433 Msa1308240:CDS
CCACAACGAGCACTTGAGGT+TGG 0.599713 8_4:-4511603 None:intergenic
GAGGCTTTCTCGTGGTTGGG+AGG 0.601791 8_4:+4514071 Msa1308240:CDS
TGACAATTGTAGATACAAAG+AGG 0.607377 8_4:+4514052 Msa1308240:CDS
TATGTTGGAGGCTCCACCGA+AGG 0.610908 8_4:-4514587 None:intergenic
TCTGGCTCCTCCACCGACAG+CGG 0.614331 8_4:+4514437 Msa1308240:CDS
TCCACCGAAGGTCCCATAGG+AGG 0.616939 8_4:-4514575 None:intergenic
ATATCTGGCTCCTCCACCGG+TGG 0.619169 8_4:+4514509 Msa1308240:CDS
GTTGGTGCAGACAGTATCGT+AGG 0.619942 8_4:+4515778 Msa1308240:CDS
GGCTCCACCGAAGGTCCCAT+AGG 0.622131 8_4:-4514578 None:intergenic
AATCCGGGCTCCTCCACTGG+TGG 0.622139 8_4:+4514545 Msa1308240:CDS
TTGATTACTGTAGATGCTGA+TGG 0.622750 8_4:+4514218 Msa1308240:intron
CTGATGCTTGCCATCGTCGG+TGG 0.623957 8_4:-4514486 None:intergenic
AGAATTTGTCAAAGTCCGAA+TGG 0.624746 8_4:+4515397 Msa1308240:CDS
AATTTACTGGTTATTCCTGG+AGG 0.631353 8_4:+4514896 Msa1308240:CDS
TTTGGAGATCACCACATCGG+AGG 0.631551 8_4:-4514654 None:intergenic
CTAGGAGGGAATCTAAACCA+TGG 0.637464 8_4:-4516149 None:intergenic
AATTCTATAGACGGGATCAG+TGG 0.637854 8_4:+4514920 Msa1308240:CDS
TACTGTAGATGCTGATGGCG+TGG 0.640979 8_4:+4514223 Msa1308240:intron
TCACTGTTGGTGATAGAGAG+TGG 0.647613 8_4:+4514681 Msa1308240:CDS
AACACCACAACGAGCACTTG+AGG 0.648489 8_4:-4511607 None:intergenic
TTAAACAAGTAATCAGCTGG+TGG 0.648634 8_4:-4513750 None:intergenic
TCTGGAAAGAGTTTGTATCC+GGG 0.648666 8_4:+4511578 Msa1308240:CDS
AATGGTAAATCAAAACGAAG+TGG 0.657504 8_4:+4514006 Msa1308240:CDS
ACTTCAGAACTTGTTAACAT+GGG 0.659774 8_4:+4514628 Msa1308240:CDS
TGTGCTTCAAATAAGCAAAG+GGG 0.668394 8_4:+4515228 Msa1308240:CDS
AACATGGGTCGCCTCCGATG+TGG 0.669387 8_4:+4514643 Msa1308240:CDS
GATACAAAGAGGCTTTCTCG+TGG 0.679180 8_4:+4514063 Msa1308240:CDS
TAGTGATCTCAGACTCACAA+TGG 0.687263 8_4:+4516026 Msa1308240:CDS
CCAACCTCAAGTGCTCGTTG+TGG 0.696181 8_4:+4511603 Msa1308240:CDS
AGACGATGCTATAATCATGG+AGG 0.727983 8_4:+4516108 Msa1308240:CDS
ACTCTTTCCAGATCAGACAA+CGG 0.731328 8_4:-4511567 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATTTATATTTTTTTTA+AGG + chr8_4:4511919-4511938 Msa1308240:intron 0.0%
!! TTATTTATAAAAAAAATTAT+AGG + chr8_4:4512588-4512607 Msa1308240:intron 0.0%
!! TTCTTATAAAAAAAACATAA+TGG - chr8_4:4511743-4511762 None:intergenic 10.0%
!!! ATTTTATATATATATTGTGA+AGG + chr8_4:4511959-4511978 Msa1308240:intron 10.0%
!! AACTAAAAATAAGATTAAAA+CGG + chr8_4:4513008-4513027 Msa1308240:intron 10.0%
!!! AAAAGTAAAATTTTATATGT+CGG + chr8_4:4513094-4513113 Msa1308240:intron 10.0%
!!! TAATTTTTTTATTTTGTTCT+TGG + chr8_4:4513470-4513489 Msa1308240:intron 10.0%
!! TTTATAACAATATTTAATGA+AGG + chr8_4:4513622-4513641 Msa1308240:intron 10.0%
!! TTGTTAGATATAATAATATA+AGG - chr8_4:4514729-4514748 None:intergenic 10.0%
!!! ATCATATGCTTTTTATTTAT+AGG - chr8_4:4511782-4511801 None:intergenic 15.0%
!!! ATGACAAACATTTAAATTTT+TGG + chr8_4:4511843-4511862 Msa1308240:intron 15.0%
!! TAAATAAATTAGATACGTTA+TGG - chr8_4:4512473-4512492 None:intergenic 15.0%
!! AATATGTTTAAATAATGTCT+AGG - chr8_4:4512561-4512580 None:intergenic 15.0%
!!! TCTTATTTTTAGTTTATCTT+AGG - chr8_4:4513002-4513021 None:intergenic 15.0%
!! ATTGTTATATATGTGTAAAT+AGG + chr8_4:4514873-4514892 Msa1308240:intron 15.0%
!! TAAAAACGATAAAATAATCT+TGG + chr8_4:4515305-4515324 Msa1308240:CDS 15.0%
!!! TCTAAAATAAGATTTACAGT+GGG - chr8_4:4513068-4513087 None:intergenic 20.0%
!!! ATCTAAAATAAGATTTACAG+TGG - chr8_4:4513069-4513088 None:intergenic 20.0%
!!! TTAATTTGGGTATATATGTT+GGG - chr8_4:4513503-4513522 None:intergenic 20.0%
!!! ATTAATTTGGGTATATATGT+TGG - chr8_4:4513504-4513523 None:intergenic 20.0%
!! CTTTCTATGTGTATTAATTT+GGG - chr8_4:4513516-4513535 None:intergenic 20.0%
!! CAAATTAATACACATAGAAA+GGG + chr8_4:4513515-4513534 Msa1308240:intron 20.0%
!! AAATTAATACACATAGAAAG+GGG + chr8_4:4513516-4513535 Msa1308240:intron 20.0%
!! TTAATGAAATGAAAACTGAA+TGG + chr8_4:4514255-4514274 Msa1308240:CDS 20.0%
!! TAATGAAATGAAAACTGAAT+GGG + chr8_4:4514256-4514275 Msa1308240:CDS 20.0%
!!! TTTTGAGCAATTAATTTCAT+TGG + chr8_4:4514280-4514299 Msa1308240:CDS 20.0%
!!! TATCTAACAAATTCCTATTT+TGG + chr8_4:4514739-4514758 Msa1308240:intron 20.0%
!!! AATTTTAACCAAACCAAAAT+AGG - chr8_4:4514755-4514774 None:intergenic 20.0%
!!! TAATTAAGTGTGATAATGAA+TGG - chr8_4:4515468-4515487 None:intergenic 20.0%
!! TATCTAACAAATTCTTGATT+TGG + chr8_4:4515495-4515514 Msa1308240:intron 20.0%
!! TGTATTATATATGCAATGAT+CGG + chr8_4:4515577-4515596 Msa1308240:intron 20.0%
!! TTTCTTACCAAATAATATAG+TGG - chr8_4:4515647-4515666 None:intergenic 20.0%
!! TTGCAATTTATTATATATGC+AGG + chr8_4:4515704-4515723 Msa1308240:intron 20.0%
!! AATTGATTGTTCTATTTGAT+TGG - chr8_4:4515849-4515868 None:intergenic 20.0%
!! TCATTCTTTTGCAAATCAAA+TGG - chr8_4:4511805-4511824 None:intergenic 25.0%
!! TTTTTATTATATACGGTGTG+TGG + chr8_4:4511873-4511892 Msa1308240:intron 25.0%
! TAAAAAGCCTATTACAATTC+GGG - chr8_4:4512197-4512216 None:intergenic 25.0%
! CTAAAAAGCCTATTACAATT+CGG - chr8_4:4512198-4512217 None:intergenic 25.0%
!!! ATATTTTTACCCTATGTGTT+TGG + chr8_4:4512857-4512876 Msa1308240:intron 25.0%
!!! TATTTTTACCCTATGTGTTT+GGG + chr8_4:4512858-4512877 Msa1308240:intron 25.0%
!!! ATTACGAAAAGCATTAGAAA+AGG - chr8_4:4513322-4513341 None:intergenic 25.0%
! TAATTTGGGTATATATGTTG+GGG - chr8_4:4513502-4513521 None:intergenic 25.0%
! CCTTTCTATGTGTATTAATT+TGG - chr8_4:4513517-4513536 None:intergenic 25.0%
! CCAAATTAATACACATAGAA+AGG + chr8_4:4513514-4513533 Msa1308240:intron 25.0%
! TGAAATACCTGAGTTTATAT+AGG - chr8_4:4513712-4513731 None:intergenic 25.0%
!!! GTTGCTATAATATTTGTTGT+AGG + chr8_4:4513965-4513984 Msa1308240:intron 25.0%
!!! TAATATTTGTTGTAGGAAGT+TGG + chr8_4:4513972-4513991 Msa1308240:intron 25.0%
!!! TTCGTTTTGATTTACCATTT+GGG - chr8_4:4514005-4514024 None:intergenic 25.0%
! AATAATTATTTGACCATCCA+AGG + chr8_4:4514135-4514154 Msa1308240:CDS 25.0%
! AATGAAATGAAAACTGAATG+GGG + chr8_4:4514257-4514276 Msa1308240:CDS 25.0%
!!! AACAAATTCCTATTTTGGTT+TGG + chr8_4:4514744-4514763 Msa1308240:intron 25.0%
! ATGTGTAAATAGGAATTTAC+TGG + chr8_4:4514883-4514902 Msa1308240:intron 25.0%
! AATCAACATTATGAGAAAAC+AGG + chr8_4:4515046-4515065 Msa1308240:CDS 25.0%
! AACTCTATGAAGCAAAAAAT+GGG + chr8_4:4515277-4515296 Msa1308240:CDS 25.0%
! AAACGATAAAATAATCTTGG+AGG + chr8_4:4515308-4515327 Msa1308240:CDS 25.0%
! TAGCATATGAAAAATTCACT+TGG + chr8_4:4515367-4515386 Msa1308240:CDS 25.0%
! ATTCTAGCCACTATATTATT+TGG + chr8_4:4515637-4515656 Msa1308240:intron 25.0%
! TATAAATATCACGAGAAAAC+AGG + chr8_4:4515904-4515923 Msa1308240:CDS 25.0%
AGATAAAGTGATAGATAACG+AGG + chr8_4:4512083-4512102 Msa1308240:intron 30.0%
GATAAAGTGATAGATAACGA+GGG + chr8_4:4512084-4512103 Msa1308240:intron 30.0%
TATAATTATTCGGGCTAAAC+GGG - chr8_4:4512151-4512170 None:intergenic 30.0%
CTATAATTATTCGGGCTAAA+CGG - chr8_4:4512152-4512171 None:intergenic 30.0%
GTTTAGCCCGAATAATTATA+GGG + chr8_4:4512151-4512170 Msa1308240:intron 30.0%
!! TCACTTTTGTTATGTCGTTT+GGG - chr8_4:4512257-4512276 None:intergenic 30.0%
!! TTCACTTTTGTTATGTCGTT+TGG - chr8_4:4512258-4512277 None:intergenic 30.0%
! ATAATCCTATTTGAAGCATG+TGG - chr8_4:4512964-4512983 None:intergenic 30.0%
TAAGATTTACAGTGGGATAA+GGG - chr8_4:4513061-4513080 None:intergenic 30.0%
ATAAGATTTACAGTGGGATA+AGG - chr8_4:4513062-4513081 None:intergenic 30.0%
ATTAGTTGATCACCTTTGAT+GGG + chr8_4:4513254-4513273 Msa1308240:intron 30.0%
!!! TTTTTTTTTTGCATTCGCAC+CGG - chr8_4:4513287-4513306 None:intergenic 30.0%
! GCTTGTGAAGATATTTTATG+TGG - chr8_4:4513574-4513593 None:intergenic 30.0%
AACCATAAGGTTGTAACAAT+GGG + chr8_4:4513594-4513613 Msa1308240:intron 30.0%
TGATCTACCTATATAAACTC+AGG + chr8_4:4513702-4513721 Msa1308240:intron 30.0%
ATCTTAAACAAGTAATCAGC+TGG - chr8_4:4513756-4513775 None:intergenic 30.0%
! AGGAAACATGTAACTTGTAA+GGG - chr8_4:4513875-4513894 None:intergenic 30.0%
! AAGGAAACATGTAACTTGTA+AGG - chr8_4:4513876-4513895 None:intergenic 30.0%
!!! CTTCGTTTTGATTTACCATT+TGG - chr8_4:4514006-4514025 None:intergenic 30.0%
AATGGTAAATCAAAACGAAG+TGG + chr8_4:4514006-4514025 Msa1308240:CDS 30.0%
ATCTACAATTGTCAGGTATA+AGG - chr8_4:4514046-4514065 None:intergenic 30.0%
TCTTTGTATCTACAATTGTC+AGG - chr8_4:4514053-4514072 None:intergenic 30.0%
TGACAATTGTAGATACAAAG+AGG + chr8_4:4514052-4514071 Msa1308240:CDS 30.0%
AGTAGATGATATGTATACCT+TGG - chr8_4:4514155-4514174 None:intergenic 30.0%
TGAGCAATTAATTTCATTGG+AGG + chr8_4:4514283-4514302 Msa1308240:CDS 30.0%
GAGCAATTAATTTCATTGGA+GGG + chr8_4:4514284-4514303 Msa1308240:CDS 30.0%
!! ACTTCAGAACTTGTTAACAT+GGG + chr8_4:4514628-4514647 Msa1308240:CDS 30.0%
AATAATATAAGGATGACGAG+AGG - chr8_4:4514718-4514737 None:intergenic 30.0%
!!! TATCATCGCTTCTTATTTTG+CGG + chr8_4:4515082-4515101 Msa1308240:intron 30.0%
TTTGTGCTTCAAATAAGCAA+AGG + chr8_4:4515226-4515245 Msa1308240:CDS 30.0%
TTGTGCTTCAAATAAGCAAA+GGG + chr8_4:4515227-4515246 Msa1308240:CDS 30.0%
GAACTCTATGAAGCAAAAAA+TGG + chr8_4:4515276-4515295 Msa1308240:CDS 30.0%
ACTAAAGATGTCCATAATCA+TGG + chr8_4:4515338-4515357 Msa1308240:CDS 30.0%
! GTGAATTTTTCATATGCTAG+AGG - chr8_4:4515366-4515385 None:intergenic 30.0%
!! CACTTTAAAATGAATAACCG+TGG - chr8_4:4515615-4515634 None:intergenic 30.0%
TTATATATGCAGGAATTTCG+AGG + chr8_4:4515714-4515733 Msa1308240:intron 30.0%
AATTTCGAGGTTAATACGAA+AGG + chr8_4:4515727-4515746 Msa1308240:CDS 30.0%
TCTGATACTTTCAGGAAAAA+AGG - chr8_4:4515814-4515833 None:intergenic 30.0%
TAAAGACGATGCTATAATCA+TGG + chr8_4:4516105-4516124 Msa1308240:CDS 30.0%
TGAAATCTCTAACATATCCA+TGG + chr8_4:4516132-4516151 Msa1308240:CDS 30.0%
ATCTGGAAAGAGTTTGTATC+CGG + chr8_4:4511577-4511596 Msa1308240:CDS 35.0%
CGTTTAGCCCGAATAATTAT+AGG + chr8_4:4512150-4512169 Msa1308240:intron 35.0%
CAATTCGGGCTCAATATTTA+AGG - chr8_4:4512183-4512202 None:intergenic 35.0%
TATTGAGCCCGAATTGTAAT+AGG + chr8_4:4512187-4512206 Msa1308240:intron 35.0%
!! TTGTAATAGGCTTTTTAGCC+CGG + chr8_4:4512200-4512219 Msa1308240:intron 35.0%
TGATTTCTCCCAAACACATA+GGG - chr8_4:4512869-4512888 None:intergenic 35.0%
!! AAAGGCATTCTAAACATAGC+TGG + chr8_4:4512915-4512934 Msa1308240:intron 35.0%
! AAGGCATTCTAAACATAGCT+GGG + chr8_4:4512916-4512935 Msa1308240:intron 35.0%
AGCAAATCAACCAAGTTGTT+TGG + chr8_4:4513133-4513152 Msa1308240:intron 35.0%
GCAAATCAACCAAGTTGTTT+GGG + chr8_4:4513134-4513153 Msa1308240:intron 35.0%
TCAAAGGTGATCAACTAATC+CGG - chr8_4:4513253-4513272 None:intergenic 35.0%
! GATTAGTTGATCACCTTTGA+TGG + chr8_4:4513253-4513272 Msa1308240:intron 35.0%
TGGAATCCTCTGTTCAAATT+CGG - chr8_4:4513554-4513573 None:intergenic 35.0%
TATCTTCACAAGCAACCATA+AGG + chr8_4:4513581-4513600 Msa1308240:intron 35.0%
CAACCATAAGGTTGTAACAA+TGG + chr8_4:4513593-4513612 Msa1308240:intron 35.0%
TTAAACAAGTAATCAGCTGG+TGG - chr8_4:4513753-4513772 None:intergenic 35.0%
! TAAGATCCAATCGTTTTCCT+TGG + chr8_4:4513770-4513789 Msa1308240:CDS 35.0%
!!! GAGTCAAATGTTTTTCAAGC+TGG + chr8_4:4513819-4513838 Msa1308240:CDS 35.0%
!!! TCAAATGTTTTTCAAGCTGG+TGG + chr8_4:4513822-4513841 Msa1308240:CDS 35.0%
TGTTTCCTTTCGATCTCATT+TGG + chr8_4:4513887-4513906 Msa1308240:intron 35.0%
AACTACCAAATGAGATCGAA+AGG - chr8_4:4513895-4513914 None:intergenic 35.0%
! TTGGTAGTTCAGTCAATGTT+TGG + chr8_4:4513906-4513925 Msa1308240:intron 35.0%
TCAGTCAATGTTTGGAAAGT+AGG + chr8_4:4513914-4513933 Msa1308240:intron 35.0%
GATGATATGTATACCTTGGA+TGG - chr8_4:4514151-4514170 None:intergenic 35.0%
TTGATTACTGTAGATGCTGA+TGG + chr8_4:4514218-4514237 Msa1308240:intron 35.0%
TCATCAACGTATCCATTACA+TGG - chr8_4:4514320-4514339 None:intergenic 35.0%
GAAGAAGATACATGTGTGTT+TGG + chr8_4:4514338-4514357 Msa1308240:CDS 35.0%
!! GACTTCAGAACTTGTTAACA+TGG + chr8_4:4514627-4514646 Msa1308240:CDS 35.0%
! AGGAATTTACTGGTTATTCC+TGG + chr8_4:4514893-4514912 Msa1308240:intron 35.0%
! AATTTACTGGTTATTCCTGG+AGG + chr8_4:4514896-4514915 Msa1308240:CDS 35.0%
GCATTCACTGTTGTATTTGA+TGG - chr8_4:4514992-4515011 None:intergenic 35.0%
!! CATAATGTTGATTCTGAAGC+TGG - chr8_4:4515039-4515058 None:intergenic 35.0%
!!! TTTTTTGACACACTGGTCTT+AGG + chr8_4:4515109-4515128 Msa1308240:intron 35.0%
!!! TTTTTGACACACTGGTCTTA+GGG + chr8_4:4515110-4515129 Msa1308240:intron 35.0%
! CTTATTTGAAGCACAAAACG+AGG - chr8_4:4515223-4515242 None:intergenic 35.0%
TGTGCTTCAAATAAGCAAAG+GGG + chr8_4:4515228-4515247 Msa1308240:CDS 35.0%
AGAATTTGTCAAAGTCCGAA+TGG + chr8_4:4515397-4515416 Msa1308240:CDS 35.0%
TGATTATACCAATGTCTCTC+AGG - chr8_4:4515444-4515463 None:intergenic 35.0%
TACCAACTGAGTTATACTCA+CGG - chr8_4:4515548-4515567 None:intergenic 35.0%
! TGAGTATAACTCAGTTGGTA+GGG + chr8_4:4515548-4515567 Msa1308240:intron 35.0%
AAATGAATAACCGTGGAATC+TGG - chr8_4:4515608-4515627 None:intergenic 35.0%
GAAGCAGTTTCAAAAACGAA+AGG + chr8_4:4515754-4515773 Msa1308240:CDS 35.0%
GTTTCAAAAACGAAAGGAGT+TGG + chr8_4:4515760-4515779 Msa1308240:CDS 35.0%
! TTTTCGTCTCTGATACTTTC+AGG - chr8_4:4515822-4515841 None:intergenic 35.0%
CGTGATATTTATAACGAAGC+TGG - chr8_4:4515897-4515916 None:intergenic 35.0%
TGCTAGATTGAGTTCACTTA+GGG - chr8_4:4516071-4516090 None:intergenic 35.0%
GAACTCAATCTAGCAGAAAA+TGG + chr8_4:4516076-4516095 Msa1308240:CDS 35.0%
ACTCTTTCCAGATCAGACAA+CGG - chr8_4:4511570-4511589 None:intergenic 40.0%
TCTGGAAAGAGTTTGTATCC+GGG + chr8_4:4511578-4511597 Msa1308240:CDS 40.0%
ATATAAGAGAGCGAGAGAGA+AGG + chr8_4:4512037-4512056 Msa1308240:intron 40.0%
TATAAGAGAGCGAGAGAGAA+GGG + chr8_4:4512038-4512057 Msa1308240:intron 40.0%
AAAGTGATAGATAACGAGGG+AGG + chr8_4:4512087-4512106 Msa1308240:intron 40.0%
AAGTGATAGATAACGAGGGA+GGG + chr8_4:4512088-4512107 Msa1308240:intron 40.0%
CCCAAGCCCTATAATTATTC+GGG - chr8_4:4512160-4512179 None:intergenic 40.0%
CCCGAATAATTATAGGGCTT+GGG + chr8_4:4512157-4512176 Msa1308240:intron 40.0%
GCCCAAGCCCTATAATTATT+CGG - chr8_4:4512161-4512180 None:intergenic 40.0%
! TTTCAAACCCGTTTTCCAAC+CGG + chr8_4:4512711-4512730 Msa1308240:intron 40.0%
GTGATTTCTCCCAAACACAT+AGG - chr8_4:4512870-4512889 None:intergenic 40.0%
! GCATGTGGAGTACTAAATGT+GGG - chr8_4:4512949-4512968 None:intergenic 40.0%
! AGCATGTGGAGTACTAAATG+TGG - chr8_4:4512950-4512969 None:intergenic 40.0%
GTACTCCACATGCTTCAAAT+AGG + chr8_4:4512956-4512975 Msa1308240:intron 40.0%
AATCAAACCCAGTATTTCCC+GGG - chr8_4:4513181-4513200 None:intergenic 40.0%
GAATCAAACCCAGTATTTCC+CGG - chr8_4:4513182-4513201 None:intergenic 40.0%
AAATACTGGGTTTGATTCCC+AGG + chr8_4:4513184-4513203 Msa1308240:intron 40.0%
AATACTGGGTTTGATTCCCA+GGG + chr8_4:4513185-4513204 Msa1308240:intron 40.0%
TGTTCAAATTCGGATCACCA+TGG - chr8_4:4513544-4513563 None:intergenic 40.0%
CACCCATTGTTACAACCTTA+TGG - chr8_4:4513599-4513618 None:intergenic 40.0%
!! AAGTTGGTACTCTACCCAAA+TGG + chr8_4:4513988-4514007 Msa1308240:CDS 40.0%
GGACTCTTTGATCCATGTAA+TGG + chr8_4:4514305-4514324 Msa1308240:CDS 40.0%
! GTTTTTGTGATTCGCCATTC+TGG + chr8_4:4514368-4514387 Msa1308240:CDS 40.0%
! TGATTCGCCATTCTGGAAAT+TGG + chr8_4:4514375-4514394 Msa1308240:CDS 40.0%
! GATTCGCCATTCTGGAAATT+GGG + chr8_4:4514376-4514395 Msa1308240:CDS 40.0%
AAGTTGCCCAATTTCCAGAA+TGG - chr8_4:4514385-4514404 None:intergenic 40.0%
!!! ATTTTTAGGTTTGCCACCAC+CGG - chr8_4:4514528-4514547 None:intergenic 40.0%
TGGTGGCAAACCTAAAAATC+CGG + chr8_4:4514529-4514548 Msa1308240:CDS 40.0%
CAAGTAAAGGAGCCATATGT+TGG - chr8_4:4514605-4514624 None:intergenic 40.0%
CAACATATGGCTCCTTTACT+TGG + chr8_4:4514603-4514622 Msa1308240:CDS 40.0%
!! GTTCTGAAGTCTCCAAGTAA+AGG - chr8_4:4514618-4514637 None:intergenic 40.0%
ATCTCCAAAACCTTCACTGT+TGG + chr8_4:4514668-4514687 Msa1308240:CDS 40.0%
! ATCACCAACAGTGAAGGTTT+TGG - chr8_4:4514675-4514694 None:intergenic 40.0%
CCTGGAGGAAATTCTATAGA+CGG + chr8_4:4514911-4514930 Msa1308240:CDS 40.0%
CTGGAGGAAATTCTATAGAC+GGG + chr8_4:4514912-4514931 Msa1308240:CDS 40.0%
AATTCTATAGACGGGATCAG+TGG + chr8_4:4514920-4514939 Msa1308240:CDS 40.0%
TTTCACAATCTGTTAGCTGC+AGG - chr8_4:4514964-4514983 None:intergenic 40.0%
TGCAGCTAACAGATTGTGAA+AGG + chr8_4:4514963-4514982 Msa1308240:CDS 40.0%
!!! CGGACATTTTTTTGACACAC+TGG + chr8_4:4515102-4515121 Msa1308240:intron 40.0%
TGCTAGAGGTTCCATGATTA+TGG - chr8_4:4515352-4515371 None:intergenic 40.0%
ATAGTTTCGCTTGAGCCATT+CGG - chr8_4:4515415-4515434 None:intergenic 40.0%
ACCAACTGAGTTATACTCAC+GGG - chr8_4:4515547-4515566 None:intergenic 40.0%
GTGAGTATAACTCAGTTGGT+AGG + chr8_4:4515547-4515566 Msa1308240:intron 40.0%
!! GAGTATAACTCAGTTGGTAG+GGG + chr8_4:4515549-4515568 Msa1308240:intron 40.0%
!! AGTATAACTCAGTTGGTAGG+GGG + chr8_4:4515550-4515569 Msa1308240:intron 40.0%
TAGTGATCTCAGACTCACAA+TGG + chr8_4:4516026-4516045 Msa1308240:CDS 40.0%
CTGCTAGATTGAGTTCACTT+AGG - chr8_4:4516072-4516091 None:intergenic 40.0%
AGACGATGCTATAATCATGG+AGG + chr8_4:4516108-4516127 Msa1308240:CDS 40.0%
GAGGGATAGAGCTGTCAAAA+CGG + chr8_4:4512106-4512125 Msa1308240:intron 45.0%
AGGGATAGAGCTGTCAAAAC+GGG + chr8_4:4512107-4512126 Msa1308240:intron 45.0%
GCCCGAATAATTATAGGGCT+TGG + chr8_4:4512156-4512175 Msa1308240:intron 45.0%
!!! AACGGGTACCGGGTTTTTTA+GGG - chr8_4:4512226-4512245 None:intergenic 45.0%
!!! TAACGGGTACCGGGTTTTTT+AGG - chr8_4:4512227-4512246 None:intergenic 45.0%
CGTCGTAAACTAAAACGACG+AGG - chr8_4:4512506-4512525 None:intergenic 45.0%
! TTCAAACCCGTTTTCCAACC+GGG + chr8_4:4512712-4512731 Msa1308240:intron 45.0%
AAAATGCCCGGTTGGAAAAC+GGG - chr8_4:4512721-4512740 None:intergenic 45.0%
CAAAATGCCCGGTTGGAAAA+CGG - chr8_4:4512722-4512741 None:intergenic 45.0%
! TCTAGAGCTGTCAAAACAGG+CGG - chr8_4:4512798-4512817 None:intergenic 45.0%
! CCATCTAGAGCTGTCAAAAC+AGG - chr8_4:4512801-4512820 None:intergenic 45.0%
!!! CCTGTTTTGACAGCTCTAGA+TGG + chr8_4:4512798-4512817 Msa1308240:intron 45.0%
CTCTAGATGGAGCGAAGAAA+GGG + chr8_4:4512811-4512830 Msa1308240:intron 45.0%
ATCAAACCCAGTATTTCCCG+GGG - chr8_4:4513180-4513199 None:intergenic 45.0%
ATACTGGGTTTGATTCCCAG+GGG + chr8_4:4513186-4513205 Msa1308240:intron 45.0%
! GTTGATCACCTTTGATGGGT+CGG + chr8_4:4513258-4513277 Msa1308240:intron 45.0%
GGGTATATATGTTGGGGACT+AGG - chr8_4:4513496-4513515 None:intergenic 45.0%
ACACATAGAAAGGGGAACCA+TGG + chr8_4:4513524-4513543 Msa1308240:intron 45.0%
GGTGATCCGAATTTGAACAG+AGG + chr8_4:4513545-4513564 Msa1308240:intron 45.0%
! TTCAAGCTGGTGGATACTCA+TGG + chr8_4:4513832-4513851 Msa1308240:CDS 45.0%
GATACAAAGAGGCTTTCTCG+TGG + chr8_4:4514063-4514082 Msa1308240:CDS 45.0%
AAAGAGGCTTTCTCGTGGTT+GGG + chr8_4:4514068-4514087 Msa1308240:CDS 45.0%
! TGGGCAACTTTTGATGTGTC+CGG + chr8_4:4514395-4514414 Msa1308240:CDS 45.0%
TATCTGATGCTTGCCATCGT+CGG - chr8_4:4514492-4514511 None:intergenic 45.0%
GATGGCAAGCATCAGATATC+TGG + chr8_4:4514494-4514513 Msa1308240:CDS 45.0%
GGTGGCAAACCTAAAAATCC+GGG + chr8_4:4514530-4514549 Msa1308240:CDS 45.0%
GTAAAGGAGCCATATGTTGG+AGG - chr8_4:4514602-4514621 None:intergenic 45.0%
!!! GGTTTTGGAGATCACCACAT+CGG - chr8_4:4514660-4514679 None:intergenic 45.0%
CTCTCTATCACCAACAGTGA+AGG - chr8_4:4514681-4514700 None:intergenic 45.0%
!! TCACTGTTGGTGATAGAGAG+TGG + chr8_4:4514681-4514700 Msa1308240:CDS 45.0%
CCGTCTATAGAATTTCCTCC+AGG - chr8_4:4514914-4514933 None:intergenic 45.0%
TGGCTCAAGCGAAACTATAG+TGG + chr8_4:4515417-4515436 Msa1308240:CDS 45.0%
ATAGTGGTCCTGAGAGACAT+TGG + chr8_4:4515433-4515452 Msa1308240:CDS 45.0%
ACCCGTGAGTATAACTCAGT+TGG + chr8_4:4515543-4515562 Msa1308240:intron 45.0%
ATCGGAAACTCCAGATTCCA+CGG + chr8_4:4515595-4515614 Msa1308240:intron 45.0%
!!! ACAATTTTTTTTATTATATA+CGG + chr8_4:4511866-4511885 Msa1308240:intron 5.0%
!!! AAAAAATGTAATTTTTAATA+TGG + chr8_4:4512638-4512657 Msa1308240:intron 5.0%
!!! AAAAATGTAATTTTTAATAT+GGG + chr8_4:4512639-4512658 Msa1308240:intron 5.0%
!! TCATTAAAATATAATAAAAA+AGG + chr8_4:4512897-4512916 Msa1308240:intron 5.0%
!!! ATATTATTATTTGTTTTTTT+TGG + chr8_4:4514834-4514853 Msa1308240:intron 5.0%
AACACCACAACGAGCACTTG+AGG - chr8_4:4511610-4511629 None:intergenic 50.0%
TCAAGTGCTCGTTGTGGTGT+TGG + chr8_4:4511609-4511628 Msa1308240:CDS 50.0%
GAGAGAAGGGAGAGAAAGAG+AGG + chr8_4:4512051-4512070 Msa1308240:intron 50.0%
!! TCGTTTGGGCTAGCTCTAAC+GGG - chr8_4:4512243-4512262 None:intergenic 50.0%
!! GTCGTTTGGGCTAGCTCTAA+CGG - chr8_4:4512244-4512263 None:intergenic 50.0%
! CGTTTTCCAACCGGGCATTT+TGG + chr8_4:4512720-4512739 Msa1308240:intron 50.0%
! GCTCTAGATGGAGCGAAGAA+AGG + chr8_4:4512810-4512829 Msa1308240:intron 50.0%
TACTGGGTTTGATTCCCAGG+GGG + chr8_4:4513187-4513206 Msa1308240:intron 50.0%
! ACCTTTGATGGGTCGGAAAC+CGG + chr8_4:4513265-4513284 Msa1308240:intron 50.0%
CCACAGCCAAGGAAAACGAT+TGG - chr8_4:4513779-4513798 None:intergenic 50.0%
! CCAATCGTTTTCCTTGGCTG+TGG + chr8_4:4513776-4513795 Msa1308240:CDS 50.0%
TTCCTTGGCTGTGGACGAAA+AGG + chr8_4:4513785-4513804 Msa1308240:CDS 50.0%
CAAAGAGGCTTTCTCGTGGT+TGG + chr8_4:4514067-4514086 Msa1308240:CDS 50.0%
! TACTGTAGATGCTGATGGCG+TGG + chr8_4:4514223-4514242 Msa1308240:intron 50.0%
GACAAGCCTCCAACAACATC+TGG + chr8_4:4514419-4514438 Msa1308240:CDS 50.0%
TTTGGAGATCACCACATCGG+AGG - chr8_4:4514657-4514676 None:intergenic 50.0%
GTTGGTGCAGACAGTATCGT+AGG + chr8_4:4515778-4515797 Msa1308240:CDS 50.0%
CCACAACGAGCACTTGAGGT+TGG - chr8_4:4511606-4511625 None:intergenic 55.0%
CCAACCTCAAGTGCTCGTTG+TGG + chr8_4:4511603-4511622 Msa1308240:CDS 55.0%
TAGAGCTGTCAAAACGGGCC+AGG + chr8_4:4512112-4512131 Msa1308240:intron 55.0%
TAGCCCGGCCCTAAAAAACC+CGG + chr8_4:4512215-4512234 Msa1308240:intron 55.0%
!!! GTACCGGGTTTTTTAGGGCC+GGG - chr8_4:4512221-4512240 None:intergenic 55.0%
!!! GGTACCGGGTTTTTTAGGGC+CGG - chr8_4:4512222-4512241 None:intergenic 55.0%
!! TAACGGGCTTCGGGCTTTGT+CGG - chr8_4:4512752-4512771 None:intergenic 55.0%
CCACTGGAGCCCAAACAACT+TGG - chr8_4:4513146-4513165 None:intergenic 55.0%
CCAAGTTGTTTGGGCTCCAG+TGG + chr8_4:4513143-4513162 Msa1308240:intron 55.0%
TTGTTTGGGCTCCAGTGGCA+AGG + chr8_4:4513148-4513167 Msa1308240:intron 55.0%
AGCTCACCCCGGGAAATACT+GGG + chr8_4:4513171-4513190 Msa1308240:intron 55.0%
TTCCCAGGGGGAACAACACT+TGG + chr8_4:4513199-4513218 Msa1308240:intron 55.0%
! GACCAAGTGTTGTTCCCCCT+GGG - chr8_4:4513204-4513223 None:intergenic 55.0%
! TGACCAAGTGTTGTTCCCCC+TGG - chr8_4:4513205-4513224 None:intergenic 55.0%
! ACCGGTTTCCGACCCATCAA+AGG - chr8_4:4513269-4513288 None:intergenic 55.0%
! CACCTTTTCGTCCACAGCCA+AGG - chr8_4:4513790-4513809 None:intergenic 55.0%
TGTTGTTGGAGGCTTGTCGC+CGG - chr8_4:4514417-4514436 None:intergenic 55.0%
GAGGAGCCAGATGTTGTTGG+AGG - chr8_4:4514428-4514447 None:intergenic 55.0%
GTGGAGGAGCCAGATGTTGT+TGG - chr8_4:4514431-4514450 None:intergenic 55.0%
TGTTAGAGGCTTGCCGCTGT+CGG - chr8_4:4514453-4514472 None:intergenic 55.0%
AGCGGCAAGCCTCTAACAAC+TGG + chr8_4:4514455-4514474 Msa1308240:CDS 55.0%
GTGGAGGAGCCAGTTGTTAG+AGG - chr8_4:4514467-4514486 None:intergenic 55.0%
! CAGATATCTGGCTCCTCCAC+CGG + chr8_4:4514506-4514525 Msa1308240:CDS 55.0%
! TTTAGGTTTGCCACCACCGG+TGG - chr8_4:4514525-4514544 None:intergenic 55.0%
! GTGGAGGAGCCCGGATTTTT+AGG - chr8_4:4514542-4514561 None:intergenic 55.0%
AAAAATCCGGGCTCCTCCAC+TGG + chr8_4:4514542-4514561 Msa1308240:CDS 55.0%
CAAGCCTCCTATGGGACCTT+CGG + chr8_4:4514571-4514590 Msa1308240:CDS 55.0%
TATGTTGGAGGCTCCACCGA+AGG - chr8_4:4514590-4514609 None:intergenic 55.0%
TCGGTGGAGCCTCCAACATA+TGG + chr8_4:4514590-4514609 Msa1308240:CDS 55.0%
! GAGCACTTGAGGTTGGCTCC+CGG - chr8_4:4511599-4511618 None:intergenic 60.0%
TCAAAACGGGCCAGGCCGTA+CGG + chr8_4:4512120-4512139 Msa1308240:intron 60.0%
GCTAAACGGGTCGACCCGTA+CGG - chr8_4:4512138-4512157 None:intergenic 60.0%
!! GGCTAGCTCTAACGGGTACC+GGG - chr8_4:4512236-4512255 None:intergenic 60.0%
!! GGGCTAGCTCTAACGGGTAC+CGG - chr8_4:4512237-4512256 None:intergenic 60.0%
TTTAACCCGCGGCCCGTGTA+GGG + chr8_4:4512670-4512689 Msa1308240:intron 60.0%
!! TCCAACCGGGCATTTTGGCC+CGG + chr8_4:4512725-4512744 Msa1308240:intron 60.0%
! AACGGGCTTCGGGCTTTGTC+GGG - chr8_4:4512751-4512770 None:intergenic 60.0%
AAGCCCGAAGCCCGTTAGAC+CGG + chr8_4:4512755-4512774 Msa1308240:intron 60.0%
! CGTTTAGGGCCCGGTCTAAC+GGG - chr8_4:4512768-4512787 None:intergenic 60.0%
! CCGTTTAGGGCCCGGTCTAA+CGG - chr8_4:4512769-4512788 None:intergenic 60.0%
CCGTTAGACCGGGCCCTAAA+CGG + chr8_4:4512766-4512785 Msa1308240:intron 60.0%
CGTTAGACCGGGCCCTAAAC+GGG + chr8_4:4512767-4512786 Msa1308240:intron 60.0%
AGCTGTCAAAACAGGCGGCC+CGG - chr8_4:4512793-4512812 None:intergenic 60.0%
GAGCTCACCCCGGGAAATAC+TGG + chr8_4:4513170-4513189 Msa1308240:intron 60.0%
GCATGTCTCTACGCACGAGC+CGG + chr8_4:4513231-4513250 Msa1308240:intron 60.0%
GAGGCTTTCTCGTGGTTGGG+AGG + chr8_4:4514071-4514090 Msa1308240:CDS 60.0%
ATGCTTGCCATCGTCGGTGG+TGG - chr8_4:4514486-4514505 None:intergenic 60.0%
CTGATGCTTGCCATCGTCGG+TGG - chr8_4:4514489-4514508 None:intergenic 60.0%
! ATATCTGGCTCCTCCACCGG+TGG + chr8_4:4514509-4514528 Msa1308240:CDS 60.0%
TGGTGGCAGCAAGCCTCCTA+TGG + chr8_4:4514562-4514581 Msa1308240:CDS 60.0%
GGTGGCAGCAAGCCTCCTAT+GGG + chr8_4:4514563-4514582 Msa1308240:CDS 60.0%
TCCACCGAAGGTCCCATAGG+AGG - chr8_4:4514578-4514597 None:intergenic 60.0%
AACATGGGTCGCCTCCGATG+TGG + chr8_4:4514643-4514662 Msa1308240:CDS 60.0%
CAAAACGGGCCAGGCCGTAC+GGG + chr8_4:4512121-4512140 Msa1308240:intron 65.0%
GGGCCGACCTGTTTAACCCG+CGG + chr8_4:4512659-4512678 Msa1308240:intron 65.0%
! GGGCCGCGGGTTAAACAGGT+CGG - chr8_4:4512665-4512684 None:intergenic 65.0%
! ACACGGGCCGCGGGTTAAAC+AGG - chr8_4:4512669-4512688 None:intergenic 65.0%
GTTTAACCCGCGGCCCGTGT+AGG + chr8_4:4512669-4512688 Msa1308240:intron 65.0%
TACCCAAGCCCCGCCCTACA+CGG - chr8_4:4512686-4512705 None:intergenic 65.0%
AGCCCGAAGCCCGTTAGACC+GGG + chr8_4:4512756-4512775 Msa1308240:intron 65.0%
CAGTGGCAAGGAGCTCACCC+CGG + chr8_4:4513160-4513179 Msa1308240:intron 65.0%
AGTGGCAAGGAGCTCACCCC+GGG + chr8_4:4513161-4513180 Msa1308240:intron 65.0%
! TCTGGCTCCTCCACCGACAG+CGG + chr8_4:4514437-4514456 Msa1308240:CDS 65.0%
TAGAGGCTTGCCGCTGTCGG+TGG - chr8_4:4514450-4514469 None:intergenic 65.0%
! CTTGCCATCGTCGGTGGTGG+AGG - chr8_4:4514483-4514502 None:intergenic 65.0%
AGGTTTGCCACCACCGGTGG+AGG - chr8_4:4514522-4514541 None:intergenic 65.0%
AATCCGGGCTCCTCCACTGG+TGG + chr8_4:4514545-4514564 Msa1308240:CDS 65.0%
!! AGGCTTGCTGCCACCAGTGG+AGG - chr8_4:4514558-4514577 None:intergenic 65.0%
!! AGGAGGCTTGCTGCCACCAG+TGG - chr8_4:4514561-4514580 None:intergenic 65.0%
GCCTCCTATGGGACCTTCGG+TGG + chr8_4:4514574-4514593 Msa1308240:CDS 65.0%
GGCTCCACCGAAGGTCCCAT+AGG - chr8_4:4514581-4514600 None:intergenic 65.0%
ACCCAAGCCCCGCCCTACAC+GGG - chr8_4:4512685-4512704 None:intergenic 70.0%
GCCGGGCCAAAATGCCCGGT+TGG - chr8_4:4512729-4512748 None:intergenic 70.0%
TCGGGCCGGGCCAAAATGCC+CGG - chr8_4:4512733-4512752 None:intergenic 70.0%
! GCTTCGGGCTTTGTCGGGCC+GGG - chr8_4:4512746-4512765 None:intergenic 70.0%
! GGCTTCGGGCTTTGTCGGGC+CGG - chr8_4:4512747-4512766 None:intergenic 70.0%
!! GGCCCGGTCTAACGGGCTTC+GGG - chr8_4:4512761-4512780 None:intergenic 70.0%
!! GGGCCCGGTCTAACGGGCTT+CGG - chr8_4:4512762-4512781 None:intergenic 70.0%
AGACCGGGCCCTAAACGGGC+CGG + chr8_4:4512771-4512790 Msa1308240:intron 70.0%
CGGGGTGAGCTCCTTGCCAC+TGG - chr8_4:4513162-4513181 None:intergenic 70.0%
AGGCTTGCCGCTGTCGGTGG+AGG - chr8_4:4514447-4514466 None:intergenic 70.0%
GGCTCCTCCACCACCGACGA+TGG + chr8_4:4514476-4514495 Msa1308240:CDS 70.0%
! TCTGGCTCCTCCACCGGTGG+TGG + chr8_4:4514512-4514531 Msa1308240:CDS 70.0%
CTGCCACCAGTGGAGGAGCC+CGG - chr8_4:4514551-4514570 None:intergenic 70.0%
ACGGGTCGACCCGTACGGCC+TGG - chr8_4:4512133-4512152 None:intergenic 75.0%
AACCCGCGGCCCGTGTAGGG+CGG + chr8_4:4512673-4512692 Msa1308240:intron 75.0%
GCCCGTGTAGGGCGGGGCTT+GGG + chr8_4:4512681-4512700 Msa1308240:intron 75.0%
GACCGGGCCCTAAACGGGCC+GGG + chr8_4:4512772-4512791 Msa1308240:intron 75.0%
CAGGCGGCCCGGCCCGTTTA+GGG - chr8_4:4512782-4512801 None:intergenic 75.0%
ACAGGCGGCCCGGCCCGTTT+AGG - chr8_4:4512783-4512802 None:intergenic 75.0%
! ACCCGCGGCCCGTGTAGGGC+GGG + chr8_4:4512674-4512693 Msa1308240:intron 80.0%
! GGCCCGTGTAGGGCGGGGCT+TGG + chr8_4:4512680-4512699 Msa1308240:intron 80.0%
!! GGCCCGGCCCGTTTAGGGCC+CGG - chr8_4:4512777-4512796 None:intergenic 80.0%
! CCCCGCCCTACACGGGCCGC+GGG - chr8_4:4512678-4512697 None:intergenic 85.0%
! CCCGCGGCCCGTGTAGGGCG+GGG + chr8_4:4512675-4512694 Msa1308240:intron 85.0%
! GCCCCGCCCTACACGGGCCG+CGG - chr8_4:4512679-4512698 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 4511564 4516159 4511564 ID=Msa1308240;Name=Msa1308240
chr8_4 mRNA 4511564 4516159 4511564 ID=Msa1308240-mRNA-1;Parent=Msa1308240;Name=Msa1308240-mRNA-1;_AED=0.07;_eAED=0.10;_QI=0|0|0|0.87|1|1|8|0|532
chr8_4 exon 4511564 4511630 4511564 ID=Msa1308240-mRNA-1:exon:1362;Parent=Msa1308240-mRNA-1
chr8_4 exon 4513724 4513853 4513724 ID=Msa1308240-mRNA-1:exon:1363;Parent=Msa1308240-mRNA-1
chr8_4 exon 4513987 4514156 4513987 ID=Msa1308240-mRNA-1:exon:1364;Parent=Msa1308240-mRNA-1
chr8_4 exon 4514231 4514702 4514231 ID=Msa1308240-mRNA-1:exon:1365;Parent=Msa1308240-mRNA-1
chr8_4 exon 4514895 4515067 4514895 ID=Msa1308240-mRNA-1:exon:1366;Parent=Msa1308240-mRNA-1
chr8_4 exon 4515214 4515454 4515214 ID=Msa1308240-mRNA-1:exon:1367;Parent=Msa1308240-mRNA-1
chr8_4 exon 4515726 4515925 4515726 ID=Msa1308240-mRNA-1:exon:1368;Parent=Msa1308240-mRNA-1
chr8_4 exon 4516014 4516159 4516014 ID=Msa1308240-mRNA-1:exon:1369;Parent=Msa1308240-mRNA-1
chr8_4 CDS 4511564 4511630 4511564 ID=Msa1308240-mRNA-1:cds;Parent=Msa1308240-mRNA-1
chr8_4 CDS 4513724 4513853 4513724 ID=Msa1308240-mRNA-1:cds;Parent=Msa1308240-mRNA-1
chr8_4 CDS 4513987 4514156 4513987 ID=Msa1308240-mRNA-1:cds;Parent=Msa1308240-mRNA-1
chr8_4 CDS 4514231 4514702 4514231 ID=Msa1308240-mRNA-1:cds;Parent=Msa1308240-mRNA-1
chr8_4 CDS 4514895 4515067 4514895 ID=Msa1308240-mRNA-1:cds;Parent=Msa1308240-mRNA-1
chr8_4 CDS 4515214 4515454 4515214 ID=Msa1308240-mRNA-1:cds;Parent=Msa1308240-mRNA-1
chr8_4 CDS 4515726 4515925 4515726 ID=Msa1308240-mRNA-1:cds;Parent=Msa1308240-mRNA-1
chr8_4 CDS 4516014 4516159 4516014 ID=Msa1308240-mRNA-1:cds;Parent=Msa1308240-mRNA-1
Gene Sequence

>Msa1308240

ATGCCGTTGTCTGATCTGGAAAGAGTTTGTATCCGGGAGCCAACCTCAAGTGCTCGTTGTGGTGTTGGTATTTCAAGATCAAAGAGAGATTTGCCACCAGCTGATTACTTGTTTAAGATCCAATCGTTTTCCTTGGCTGTGGACGAAAAGGTGAAGAAATACGAGTCAAATGTTTTTCAAGCTGGTGGATACTCATGGAAGTTGGTACTCTACCCAAATGGTAAATCAAAACGAAGTGGCTTAGATCATGTTTCCTTATACCTGACAATTGTAGATACAAAGAGGCTTTCTCGTGGTTGGGAGGTTAACGTTAATTATAAGCTGTTCGTGTTTGATCATAATTGTAATAATTATTTGACCATCCAAGATGCTGATGGCGTGGTACGAAAATTTAATGAAATGAAAACTGAATGGGGTTTTGAGCAATTAATTTCATTGGAGGGACTCTTTGATCCATGTAATGGATACGTTGATGAAGAAGATACATGTGTGTTTGGAGCTGAAGTTTTTGTGATTCGCCATTCTGGAAATTGGGCAACTTTTGATGTGTCCGGCGACAAGCCTCCAACAACATCTGGCTCCTCCACCGACAGCGGCAAGCCTCTAACAACTGGCTCCTCCACCACCGACGATGGCAAGCATCAGATATCTGGCTCCTCCACCGGTGGTGGCAAACCTAAAAATCCGGGCTCCTCCACTGGTGGCAGCAAGCCTCCTATGGGACCTTCGGTGGAGCCTCCAACATATGGCTCCTTTACTTGGAGACTTCAGAACTTGTTAACATGGGTCGCCTCCGATGTGGTGATCTCCAAAACCTTCACTGTTGGTGATAGAGAGTGGAATTTACTGGTTATTCCTGGAGGAAATTCTATAGACGGGATCAGTGGCAAATATCTATCTTTATTCCTGCAGCTAACAGATTGTGAAAGGTTTCCATCAAATACAACAGTGAATGCAAGTTTTAAGCTTAAAGTTTTAGACCAGCTTCAGAATCAACATTATGAGAAAACAGAAAACTCCTCGTTTTGTGCTTCAAATAAGCAAAGGGGATATTCAAAGTTCATATCTCTAAGTGAACTCTATGAAGCAAAAAATGGGTATTCTAAAAACGATAAAATAATCTTGGAGGTTGAAATACTAAAGATGTCCATAATCATGGAACCTCTAGCATATGAAAAATTCACTTGGAAACTTGAGAATTTGTCAAAGTCCGAATGGCTCAAGCGAAACTATAGTGGTCCTGAGAGACATTGGAATTTCGAGGTTAATACGAAAGGAGTTGAAGCAGTTTCAAAAACGAAAGGAGTTGGTGCAGACAGTATCGTAGGCAAATATCTACCTTTTTTCCTGAAAGTATCAGAGACGAAAAATTTCCAATCAAATAGAACAATCAATTTAACTTTGAAGTGTAAAATTTTAGACCAGCTTCGTTATAAATATCACGAGAAAACAGAAAACTTCATGTTAGTGATCTCAGACTCACAATGGTTATTATCAAACGTGATATCCCTAAGTGAACTCAATCTAGCAGAAAATGGATATATTAAAGACGATGCTATAATCATGGAGGTTGAAATCTCTAACATATCCATGGTTTAG
Protein sequence

>Msa1308240

MPLSDLERVCIREPTSSARCGVGISRSKRDLPPADYLFKIQSFSLAVDEKVKKYESNVFQAGGYSWKLVLYPNGKSKRSGLDHVSLYLTIVDTKRLSRGWEVNVNYKLFVFDHNCNNYLTIQDADGVVRKFNEMKTEWGFEQLISLEGLFDPCNGYVDEEDTCVFGAEVFVIRHSGNWATFDVSGDKPPTTSGSSTDSGKPLTTGSSTTDDGKHQISGSSTGGGKPKNPGSSTGGSKPPMGPSVEPPTYGSFTWRLQNLLTWVASDVVISKTFTVGDREWNLLVIPGGNSIDGISGKYLSLFLQLTDCERFPSNTTVNASFKLKVLDQLQNQHYEKTENSSFCASNKQRGYSKFISLSELYEAKNGYSKNDKIILEVEILKMSIIMEPLAYEKFTWKLENLSKSEWLKRNYSGPERHWNFEVNTKGVEAVSKTKGVGADSIVGKYLPFFLKVSETKNFQSNRTINLTLKCKILDQLRYKYHEKTENFMLVISDSQWLLSNVISLSELNLAENGYIKDDAIIMEVEISNISMV*