Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273860 | XP_013444156.1 | 98.980 | 98 | 1 | 0 | 1 | 98 | 1 | 98 | 1.63e-64 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273860 | sp|Q9FIJ2|NDUA2_ARATH | 69.474 | 95 | 29 | 0 | 1 | 95 | 1 | 95 | 6.90e-49 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273860 | A0A072TMV0 | 98.980 | 98 | 1 | 0 | 1 | 98 | 1 | 98 | 7.78e-65 | 200 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1230940 | Msa1273860 | 0.842007 | 3.363030e-58 | -8.615850e-47 |
| Msa1231010 | Msa1273860 | 0.802444 | 5.594909e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273860 | MtrunA17_Chr8g0339811 | 98.980 | 98 | 1 | 0 | 1 | 98 | 1 | 98 | 1.50e-68 | 200 |
| Msa1273860 | MtrunA17_Chr2g0294481 | 92.632 | 95 | 7 | 0 | 1 | 95 | 1 | 95 | 9.02e-54 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273860 | AT5G47890.1 | 69.474 | 95 | 29 | 0 | 1 | 95 | 1 | 95 | 7.01e-50 | 153 |
Find 38 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGATCAATATTGGCAATTT+TGG | -0.001659 | 8_3:-7604889 | None:intergenic |
| ACGGATTAAATCTATTTATT+TGG | 0.121925 | 8_3:+7605849 | Msa1273860:three_prime_UTR |
| TACCATATCTTGCCCATAAT+TGG | 0.178345 | 8_3:-7604933 | None:intergenic |
| GTGGAGTTGAACCCCAATTA+TGG | 0.257922 | 8_3:+7604920 | Msa1273860:CDS |
| ATTTGTTGAAAAGAATTATA+CGG | 0.319148 | 8_3:+7604849 | Msa1273860:CDS |
| ACCATATCTTGCCCATAATT+GGG | 0.333987 | 8_3:-7604932 | None:intergenic |
| CTGCATTCACGGATCAATAT+TGG | 0.349255 | 8_3:-7604898 | None:intergenic |
| AACCTTGCAGATGAGCTTGC+AGG | 0.367566 | 8_3:-7604729 | None:intergenic |
| CCCCAATTATGGGCAAGATA+TGG | 0.376635 | 8_3:+7604931 | Msa1273860:CDS |
| TGAACTCTTCTTCTGATCTT+CGG | 0.383237 | 8_3:+7602620 | Msa1273860:five_prime_UTR |
| AGCTTCAACTTAAACTCAAC+AGG | 0.397065 | 8_3:-7605777 | None:intergenic |
| AATTTCTGACTCACTGTTTG+TGG | 0.419650 | 8_3:-7602646 | None:intergenic |
| CAAAGAACATAAAAGAGCTT+CGG | 0.421200 | 8_3:+7604685 | Msa1273860:CDS |
| TGGAGTTGAACCCCAATTAT+GGG | 0.437531 | 8_3:+7604921 | Msa1273860:CDS |
| GTTCAACTCCACTGCATTCA+CGG | 0.460928 | 8_3:-7604909 | None:intergenic |
| CCAGATTTGGGCGTTGAGAA+AGG | 0.467692 | 8_3:+7605576 | Msa1273860:intron |
| AAAGATAGATTGATACCCTC+TGG | 0.469486 | 8_3:-7602571 | None:intergenic |
| CTCGAAGATATGGTAAAAGC+AGG | 0.488900 | 8_3:+7605642 | Msa1273860:CDS |
| TGTTATTACAGTGCGACTCT+TGG | 0.501310 | 8_3:+7605738 | Msa1273860:three_prime_UTR |
| CGTTGAGAAAGGCATCAAAC+TGG | 0.502706 | 8_3:+7605587 | Msa1273860:CDS |
| ATGAGCTTGCAGGAGATGAC+TGG | 0.511150 | 8_3:-7604719 | None:intergenic |
| AAGATAGATTGATACCCTCT+GGG | 0.550031 | 8_3:-7602570 | None:intergenic |
| CCATATCTTGCCCATAATTG+GGG | 0.562541 | 8_3:-7604931 | None:intergenic |
| TCGAAGATATGGTAAAAGCA+GGG | 0.571911 | 8_3:+7605643 | Msa1273860:CDS |
| CTCCTGCAAGCTCATCTGCA+AGG | 0.602497 | 8_3:+7604727 | Msa1273860:CDS |
| TGAGATATTGATTCAAAACA+CGG | 0.613809 | 8_3:+7605830 | Msa1273860:three_prime_UTR |
| GATCTAGGAAAGCAATGGCA+TGG | 0.619704 | 8_3:+7604649 | Msa1273860:intron |
| GAGAAAGGCATCAAACTGGA+AGG | 0.620188 | 8_3:+7605591 | Msa1273860:CDS |
| CATCAAACTGGAAGGCATGA+CGG | 0.631288 | 8_3:+7605599 | Msa1273860:CDS |
| CGAAGATATGGTAAAAGCAG+GGG | 0.650048 | 8_3:+7605644 | Msa1273860:CDS |
| TAATCAAATCAATCCCCAGA+GGG | 0.654912 | 8_3:+7602556 | Msa1273860:five_prime_UTR |
| AGGAAAGCAATGGCATGGAG+AGG | 0.655080 | 8_3:+7604654 | Msa1273860:intron |
| TCAATATCTCACAATAAACA+TGG | 0.658161 | 8_3:-7605818 | None:intergenic |
| TATGTATCGACTAAGCAACC+TGG | 0.659217 | 8_3:+7605922 | Msa1273860:three_prime_UTR |
| ATATTGATCCGTGAATGCAG+TGG | 0.692040 | 8_3:+7604901 | Msa1273860:CDS |
| ACTTTGATCTAGGAAAGCAA+TGG | 0.709760 | 8_3:+7604644 | Msa1273860:intron |
| GTAATCAAATCAATCCCCAG+AGG | 0.733302 | 8_3:+7602555 | Msa1273860:five_prime_UTR |
| AGATAGATTGATACCCTCTG+GGG | 0.738853 | 8_3:-7602569 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATGAAAATTAAGATA+GGG | - | chr8_3:7604961-7604980 | None:intergenic | 10.0% |
| !! | AAAATAATGAAAATTAAGAT+AGG | - | chr8_3:7604962-7604981 | None:intergenic | 10.0% |
| !!! | TTGCTTTTTTTATTACATTT+AGG | + | chr8_3:7603165-7603184 | Msa1273860:intron | 15.0% |
| !! | AAATATTATAACTTTGATCT+AGG | + | chr8_3:7604634-7604653 | Msa1273860:intron | 15.0% |
| !!! | ATTATAATGCTTTGAAATTT+TGG | - | chr8_3:7604780-7604799 | None:intergenic | 15.0% |
| !!! | ATTATTATTTTTGTTATCTC+AGG | + | chr8_3:7604824-7604843 | Msa1273860:intron | 15.0% |
| !!! | TTATTATTTTTGTTATCTCA+GGG | + | chr8_3:7604825-7604844 | Msa1273860:intron | 15.0% |
| !!! | ATTTGTTGAAAAGAATTATA+CGG | + | chr8_3:7604849-7604868 | Msa1273860:CDS | 15.0% |
| !! | AATAATGAAAATTAAGATAG+GGG | - | chr8_3:7604960-7604979 | None:intergenic | 15.0% |
| !! | TATTATAATATACACAACTT+AGG | - | chr8_3:7605328-7605347 | None:intergenic | 15.0% |
| !! | TGTATATTATAATATCCATT+CGG | + | chr8_3:7605334-7605353 | Msa1273860:intron | 15.0% |
| !! | GAAATAGAAAAACTTGTAAT+TGG | - | chr8_3:7602694-7602713 | None:intergenic | 20.0% |
| !!! | TTATTTGAGACTGTTTTTAT+AGG | + | chr8_3:7602788-7602807 | Msa1273860:intron | 20.0% |
| !!! | ATAATCTAGTTCTATAACAA+AGG | - | chr8_3:7602894-7602913 | None:intergenic | 20.0% |
| !! | AAAATAATAGCCAAACTTAT+GGG | - | chr8_3:7603449-7603468 | None:intergenic | 20.0% |
| !!! | CTATTCAAAATTGATTTGAA+TGG | - | chr8_3:7604095-7604114 | None:intergenic | 20.0% |
| !!! | CATTCAAATCAATTTTGAAT+AGG | + | chr8_3:7604093-7604112 | Msa1273860:intron | 20.0% |
| !! | TAATGAAGAAAACAGTAAAA+GGG | - | chr8_3:7604401-7604420 | None:intergenic | 20.0% |
| !! | ATAATGAAGAAAACAGTAAA+AGG | - | chr8_3:7604402-7604421 | None:intergenic | 20.0% |
| !!! | GATATATTTTTTCCTTTCTT+TGG | + | chr8_3:7604753-7604772 | Msa1273860:intron | 20.0% |
| !!! | TTTCAATATTATCCCAATTT+TGG | + | chr8_3:7605176-7605195 | Msa1273860:intron | 20.0% |
| !!! | TTTTTTTCTTAATCCAAGTT+CGG | - | chr8_3:7605304-7605323 | None:intergenic | 20.0% |
| !!! | ACGGATTAAATCTATTTATT+TGG | + | chr8_3:7605849-7605868 | Msa1273860:three_prime_UTR | 20.0% |
| !!! | CTTATTTTCATAAGTTCTTC+AGG | + | chr8_3:7602813-7602832 | Msa1273860:intron | 25.0% |
| ! | TTATACTCAATGTCATTCAT+GGG | - | chr8_3:7602959-7602978 | None:intergenic | 25.0% |
| ! | ATTATACTCAATGTCATTCA+TGG | - | chr8_3:7602960-7602979 | None:intergenic | 25.0% |
| ! | TGAATGACATTGAGTATAAT+TGG | + | chr8_3:7602960-7602979 | Msa1273860:intron | 25.0% |
| ! | GAATGACATTGAGTATAATT+GGG | + | chr8_3:7602961-7602980 | Msa1273860:intron | 25.0% |
| ! | ATAAGTGTTAGTAAGTTTCT+TGG | + | chr8_3:7603063-7603082 | Msa1273860:intron | 25.0% |
| ! | TTCTTGGTATAATAGAGTAT+TGG | + | chr8_3:7603079-7603098 | Msa1273860:intron | 25.0% |
| !! | TCTTGGTATAATAGAGTATT+GGG | + | chr8_3:7603080-7603099 | Msa1273860:intron | 25.0% |
| ! | TCAAGTCTATTGTTAGTTAT+AGG | + | chr8_3:7603249-7603268 | Msa1273860:intron | 25.0% |
| ! | CAAGTCTATTGTTAGTTATA+GGG | + | chr8_3:7603250-7603269 | Msa1273860:intron | 25.0% |
| ! | ACACTTTACCACAATATAAA+CGG | - | chr8_3:7603312-7603331 | None:intergenic | 25.0% |
| ! | GAAAATAATAGCCAAACTTA+TGG | - | chr8_3:7603450-7603469 | None:intergenic | 25.0% |
| ! | TAGTCATGGAAAAAAAATCT+GGG | - | chr8_3:7603644-7603663 | None:intergenic | 25.0% |
| ! | TTAGTCATGGAAAAAAAATC+TGG | - | chr8_3:7603645-7603664 | None:intergenic | 25.0% |
| !!! | TTTTTTCCATGACTAAAAAG+TGG | + | chr8_3:7603649-7603668 | Msa1273860:intron | 25.0% |
| ! | TTAACTGAGAAATAGAAAAC+TGG | - | chr8_3:7603874-7603893 | None:intergenic | 25.0% |
| !! | TAAGATTTTATCAATGCTAG+TGG | - | chr8_3:7603978-7603997 | None:intergenic | 25.0% |
| ! | GTGTAAAATTATTAAGCTCA+TGG | + | chr8_3:7604046-7604065 | Msa1273860:intron | 25.0% |
| !! | AATCAATTTTGAATAGGACA+AGG | + | chr8_3:7604099-7604118 | Msa1273860:intron | 25.0% |
| ! | AATTTCCTGTTATGAAACTA+GGG | - | chr8_3:7605029-7605048 | None:intergenic | 25.0% |
| ! | AAATTTCCTGTTATGAAACT+AGG | - | chr8_3:7605030-7605049 | None:intergenic | 25.0% |
| !! | GTTTCATAACAGGAAATTTT+AGG | + | chr8_3:7605031-7605050 | Msa1273860:intron | 25.0% |
| ! | ACGTAGTTATGAGAATATAA+TGG | + | chr8_3:7605129-7605148 | Msa1273860:intron | 25.0% |
| !! | GATTGTTACTTCTGATTAAT+TGG | + | chr8_3:7605361-7605380 | Msa1273860:intron | 25.0% |
| ! | TACTGAAATTGGCATTATAA+GGG | - | chr8_3:7605426-7605445 | None:intergenic | 25.0% |
| ! | ATACTGAAATTGGCATTATA+AGG | - | chr8_3:7605427-7605446 | None:intergenic | 25.0% |
| !!! | TCATTCTCATTATTTTGTAC+TGG | + | chr8_3:7605513-7605532 | Msa1273860:intron | 25.0% |
| !! | CTTTTATTCACTGTATGAAA+GGG | + | chr8_3:7605692-7605711 | Msa1273860:three_prime_UTR | 25.0% |
| !! | GAAAGGGAATAAATGTTTTT+AGG | + | chr8_3:7605708-7605727 | Msa1273860:three_prime_UTR | 25.0% |
| ! | TCAATATCTCACAATAAACA+TGG | - | chr8_3:7605821-7605840 | None:intergenic | 25.0% |
| !!! | TGAGATATTGATTCAAAACA+CGG | + | chr8_3:7605830-7605849 | Msa1273860:three_prime_UTR | 25.0% |
| !! | CTTAAAAAGTATATTCTACC+AGG | - | chr8_3:7605943-7605962 | None:intergenic | 25.0% |
| TCATAAGTGCTTATCATGAT+AGG | - | chr8_3:7602926-7602945 | None:intergenic | 30.0% | |
| ATTGTTAGTTATAGGGAGTA+TGG | + | chr8_3:7603257-7603276 | Msa1273860:intron | 30.0% | |
| GTTTATATTGTGGTAAAGTG+TGG | + | chr8_3:7603311-7603330 | Msa1273860:intron | 30.0% | |
| AACTTATGGGCAAAAAATTG+TGG | - | chr8_3:7603436-7603455 | None:intergenic | 30.0% | |
| !!! | CAATTTTTTGCCCATAAGTT+TGG | + | chr8_3:7603436-7603455 | Msa1273860:intron | 30.0% |
| ! | GCTATTATTTTCATTCTGAC+AGG | + | chr8_3:7603458-7603477 | Msa1273860:intron | 30.0% |
| TTAATTGGAAATCGGAAACT+TGG | + | chr8_3:7603494-7603513 | Msa1273860:intron | 30.0% | |
| TAATTGGAAATCGGAAACTT+GGG | + | chr8_3:7603495-7603514 | Msa1273860:intron | 30.0% | |
| TGGCTATATACAATCTCAAA+GGG | - | chr8_3:7603616-7603635 | None:intergenic | 30.0% | |
| AGTCATGGAAAAAAAATCTG+GGG | - | chr8_3:7603643-7603662 | None:intergenic | 30.0% | |
| !!! | AAACTTCCACTTTTTAGTCA+TGG | - | chr8_3:7603658-7603677 | None:intergenic | 30.0% |
| TCTTGTAAACAACTACATGA+GGG | - | chr8_3:7603801-7603820 | None:intergenic | 30.0% | |
| ATCTTGTAAACAACTACATG+AGG | - | chr8_3:7603802-7603821 | None:intergenic | 30.0% | |
| CAGTTAAGAAAAAGTAGTAG+AGG | + | chr8_3:7603887-7603906 | Msa1273860:intron | 30.0% | |
| TATAACAATTACCAAGATGC+AGG | - | chr8_3:7603936-7603955 | None:intergenic | 30.0% | |
| ! | TTGATTTGAATGGTAGAAGT+TGG | - | chr8_3:7604085-7604104 | None:intergenic | 30.0% |
| TATCTGTCCATTAGATATGT+AGG | + | chr8_3:7604284-7604303 | Msa1273860:intron | 30.0% | |
| ACTCTTACCTACATATCTAA+TGG | - | chr8_3:7604294-7604313 | None:intergenic | 30.0% | |
| ! | AGATATGTAGGTAAGAGTAT+TGG | + | chr8_3:7604296-7604315 | Msa1273860:intron | 30.0% |
| !! | GATATGTAGGTAAGAGTATT+GGG | + | chr8_3:7604297-7604316 | Msa1273860:intron | 30.0% |
| ATAATATGATTGTCTGTGAG+AGG | + | chr8_3:7604459-7604478 | Msa1273860:intron | 30.0% | |
| !! | GTATCTAGTATTGATTTGAC+TGG | - | chr8_3:7604534-7604553 | None:intergenic | 30.0% |
| AAATCAATACTAGATACCAG+TGG | + | chr8_3:7604537-7604556 | Msa1273860:intron | 30.0% | |
| CAAAGAACATAAAAGAGCTT+CGG | + | chr8_3:7604685-7604704 | Msa1273860:CDS | 30.0% | |
| !! | TGAAATTTTGGTCCAAAGAA+AGG | - | chr8_3:7604768-7604787 | None:intergenic | 30.0% |
| ! | GGATCAATATTGGCAATTTT+GGG | - | chr8_3:7604891-7604910 | None:intergenic | 30.0% |
| GAACATGTGAATGCAAATTA+TGG | - | chr8_3:7605003-7605022 | None:intergenic | 30.0% | |
| ATTTCCTGTTATGAAACTAG+GGG | - | chr8_3:7605028-7605047 | None:intergenic | 30.0% | |
| ! | TGTGGATTAAAGCCAAAATT+GGG | - | chr8_3:7605191-7605210 | None:intergenic | 30.0% |
| ! | TTGTGGATTAAAGCCAAAAT+TGG | - | chr8_3:7605192-7605211 | None:intergenic | 30.0% |
| GATTCGAGATATTGTTTGAA+GGG | - | chr8_3:7605252-7605271 | None:intergenic | 30.0% | |
| AGATTCGAGATATTGTTTGA+AGG | - | chr8_3:7605253-7605272 | None:intergenic | 30.0% | |
| TTCAAACAATATCTCGAATC+TGG | + | chr8_3:7605252-7605271 | Msa1273860:intron | 30.0% | |
| AAGTAACAATCAAAACCGAA+TGG | - | chr8_3:7605352-7605371 | None:intergenic | 30.0% | |
| !! | ATTAATTGGCTTGTAGTCAA+TGG | + | chr8_3:7605375-7605394 | Msa1273860:intron | 30.0% |
| ! | TAGTTTTCTAATCGCATTGT+AGG | - | chr8_3:7605401-7605420 | None:intergenic | 30.0% |
| CAGAGTAAGTATACTGAAAT+TGG | - | chr8_3:7605437-7605456 | None:intergenic | 30.0% | |
| GCTACAAGATATAATCAGAA+AGG | - | chr8_3:7605484-7605503 | None:intergenic | 30.0% | |
| TCCTTCTTTAATACCAGATT+TGG | + | chr8_3:7605563-7605582 | Msa1273860:intron | 30.0% | |
| CCTTCTTTAATACCAGATTT+GGG | + | chr8_3:7605564-7605583 | Msa1273860:intron | 30.0% | |
| TCGAGTACCTTAAAAATTTG+TGG | - | chr8_3:7605627-7605646 | None:intergenic | 30.0% | |
| !!! | TTTTAAGGTACTCGAAGATA+TGG | + | chr8_3:7605632-7605651 | Msa1273860:CDS | 30.0% |
| ! | GCTTTTATTCACTGTATGAA+AGG | + | chr8_3:7605691-7605710 | Msa1273860:three_prime_UTR | 30.0% |
| TAATCAAATCAATCCCCAGA+GGG | + | chr8_3:7602556-7602575 | Msa1273860:five_prime_UTR | 35.0% | |
| AAGATAGATTGATACCCTCT+GGG | - | chr8_3:7602573-7602592 | None:intergenic | 35.0% | |
| AAAGATAGATTGATACCCTC+TGG | - | chr8_3:7602574-7602593 | None:intergenic | 35.0% | |
| TGAACTCTTCTTCTGATCTT+CGG | + | chr8_3:7602620-7602639 | Msa1273860:five_prime_UTR | 35.0% | |
| AATTTCTGACTCACTGTTTG+TGG | - | chr8_3:7602649-7602668 | None:intergenic | 35.0% | |
| ACTACTAAGCACATAGTTGA+TGG | + | chr8_3:7603197-7603216 | Msa1273860:intron | 35.0% | |
| ! | TTGATGGCTTGGATATCAAA+TGG | + | chr8_3:7603213-7603232 | Msa1273860:intron | 35.0% |
| !!! | GGGAGTATGGTTCTAAATTT+TGG | + | chr8_3:7603270-7603289 | Msa1273860:intron | 35.0% |
| TATATTTCGTCCGAAATTGC+TGG | + | chr8_3:7603376-7603395 | Msa1273860:intron | 35.0% | |
| TTTCATTCTGACAGGTATAG+TGG | + | chr8_3:7603466-7603485 | Msa1273860:intron | 35.0% | |
| TTCATTCTGACAGGTATAGT+GGG | + | chr8_3:7603467-7603486 | Msa1273860:intron | 35.0% | |
| AATTGGAAATCGGAAACTTG+GGG | + | chr8_3:7603496-7603515 | Msa1273860:intron | 35.0% | |
| AACCAACTACATGGTCAAAT+TGG | + | chr8_3:7603533-7603552 | Msa1273860:intron | 35.0% | |
| CTGGCTATATACAATCTCAA+AGG | - | chr8_3:7603617-7603636 | None:intergenic | 35.0% | |
| ! | GAAAAAAAATCTGGGGTTTC+TGG | - | chr8_3:7603636-7603655 | None:intergenic | 35.0% |
| CAGCTCATGATAAATTCTCT+TGG | - | chr8_3:7603761-7603780 | None:intergenic | 35.0% | |
| CAAGAGAATTTATCATGAGC+TGG | + | chr8_3:7603759-7603778 | Msa1273860:intron | 35.0% | |
| AGTTGTTTACAAGATTGACG+AGG | + | chr8_3:7603807-7603826 | Msa1273860:intron | 35.0% | |
| CTGAGAAATAGAAAACTGGA+TGG | - | chr8_3:7603870-7603889 | None:intergenic | 35.0% | |
| ! | AGTAGTAGAGGTACATAAAG+TGG | + | chr8_3:7603899-7603918 | Msa1273860:intron | 35.0% |
| TAGTGGTTCAATGATATTGG+GGG | - | chr8_3:7603961-7603980 | None:intergenic | 35.0% | |
| CTAGTGGTTCAATGATATTG+GGG | - | chr8_3:7603962-7603981 | None:intergenic | 35.0% | |
| GCTAGTGGTTCAATGATATT+GGG | - | chr8_3:7603963-7603982 | None:intergenic | 35.0% | |
| TGCTAGTGGTTCAATGATAT+TGG | - | chr8_3:7603964-7603983 | None:intergenic | 35.0% | |
| TATCAAGCAGAAGCAAAAAC+TGG | + | chr8_3:7604001-7604020 | Msa1273860:intron | 35.0% | |
| TGCATATACCTCCCAAAATT+AGG | - | chr8_3:7604205-7604224 | None:intergenic | 35.0% | |
| !! | CTGTTAACTTGTTACAACAG+AGG | + | chr8_3:7604328-7604347 | Msa1273860:intron | 35.0% |
| ACTTTGATCTAGGAAAGCAA+TGG | + | chr8_3:7604644-7604663 | Msa1273860:intron | 35.0% | |
| ! | CGGATCAATATTGGCAATTT+TGG | - | chr8_3:7604892-7604911 | None:intergenic | 35.0% |
| ACCATATCTTGCCCATAATT+GGG | - | chr8_3:7604935-7604954 | None:intergenic | 35.0% | |
| TACCATATCTTGCCCATAAT+TGG | - | chr8_3:7604936-7604955 | None:intergenic | 35.0% | |
| TTTCCTGTTATGAAACTAGG+GGG | - | chr8_3:7605027-7605046 | None:intergenic | 35.0% | |
| ! | TCATAACTACGTCTCTAGAA+TGG | - | chr8_3:7605121-7605140 | None:intergenic | 35.0% |
| CTCAGAACAACAAATGTTTG+TGG | - | chr8_3:7605209-7605228 | None:intergenic | 35.0% | |
| CCCAAATCTGGTATTAAAGA+AGG | - | chr8_3:7605567-7605586 | None:intergenic | 35.0% | |
| ! | GACGGAACCACAAATTTTTA+AGG | + | chr8_3:7605617-7605636 | Msa1273860:CDS | 35.0% |
| TCGAAGATATGGTAAAAGCA+GGG | + | chr8_3:7605643-7605662 | Msa1273860:CDS | 35.0% | |
| AGCTTCAACTTAAACTCAAC+AGG | - | chr8_3:7605780-7605799 | None:intergenic | 35.0% | |
| GTAATCAAATCAATCCCCAG+AGG | + | chr8_3:7602555-7602574 | Msa1273860:five_prime_UTR | 40.0% | |
| AGATAGATTGATACCCTCTG+GGG | - | chr8_3:7602572-7602591 | None:intergenic | 40.0% | |
| !! | TAAGCACATAGTTGATGGCT+TGG | + | chr8_3:7603202-7603221 | Msa1273860:intron | 40.0% |
| ATATTGTGGTAAAGTGTGGC+TGG | + | chr8_3:7603315-7603334 | Msa1273860:intron | 40.0% | |
| AAAAAATTGTGGAGAGGGAG+GGG | - | chr8_3:7603425-7603444 | None:intergenic | 40.0% | |
| CAAAAAATTGTGGAGAGGGA+GGG | - | chr8_3:7603426-7603445 | None:intergenic | 40.0% | |
| TGGGCAAAAAATTGTGGAGA+GGG | - | chr8_3:7603430-7603449 | None:intergenic | 40.0% | |
| ATGGGCAAAAAATTGTGGAG+AGG | - | chr8_3:7603431-7603450 | None:intergenic | 40.0% | |
| TCATTCTGACAGGTATAGTG+GGG | + | chr8_3:7603468-7603487 | Msa1273860:intron | 40.0% | |
| ! | TGGGGTGCTTAATTGGAAAT+CGG | + | chr8_3:7603486-7603505 | Msa1273860:intron | 40.0% |
| AGCCAATTTGACCATGTAGT+TGG | - | chr8_3:7603538-7603557 | None:intergenic | 40.0% | |
| TTTAGATGCAGCAACATGGT+AGG | - | chr8_3:7603590-7603609 | None:intergenic | 40.0% | |
| GAGATTTAGATGCAGCAACA+TGG | - | chr8_3:7603594-7603613 | None:intergenic | 40.0% | |
| AACTATTGCGACTGAACTGA+AGG | + | chr8_3:7603685-7603704 | Msa1273860:intron | 40.0% | |
| ! | GCTATTGACTGTTGTCTATG+TGG | - | chr8_3:7603739-7603758 | None:intergenic | 40.0% |
| ! | AGTAGAGGTACATAAAGTGG+AGG | + | chr8_3:7603902-7603921 | Msa1273860:intron | 40.0% |
| TATGTTAACCGCCCACTAAA+GGG | + | chr8_3:7604142-7604161 | Msa1273860:intron | 40.0% | |
| TTGACATTTGGCCCTTTAGT+GGG | - | chr8_3:7604156-7604175 | None:intergenic | 40.0% | |
| !! | TTTTGGGAGGTATATGCAAG+AGG | + | chr8_3:7604207-7604226 | Msa1273860:intron | 40.0% |
| !! | GTAGGTAAGAGTATTGGGAT+AGG | + | chr8_3:7604302-7604321 | Msa1273860:intron | 40.0% |
| AGTGCTTCTATGTGAAGCAT+AGG | + | chr8_3:7604351-7604370 | Msa1273860:intron | 40.0% | |
| GTGCTTCTATGTGAAGCATA+GGG | + | chr8_3:7604352-7604371 | Msa1273860:intron | 40.0% | |
| TGCTTCTATGTGAAGCATAG+GGG | + | chr8_3:7604353-7604372 | Msa1273860:intron | 40.0% | |
| !!! | AGGGGGCATGAATTTTTTGA+AGG | + | chr8_3:7604371-7604390 | Msa1273860:intron | 40.0% |
| !!! | GGGGGCATGAATTTTTTGAA+GGG | + | chr8_3:7604372-7604391 | Msa1273860:intron | 40.0% |
| ATTGTCTGTGAGAGGATGTA+AGG | + | chr8_3:7604467-7604486 | Msa1273860:intron | 40.0% | |
| TTGTCTGTGAGAGGATGTAA+GGG | + | chr8_3:7604468-7604487 | Msa1273860:intron | 40.0% | |
| CTGCATTCACGGATCAATAT+TGG | - | chr8_3:7604901-7604920 | None:intergenic | 40.0% | |
| ATATTGATCCGTGAATGCAG+TGG | + | chr8_3:7604901-7604920 | Msa1273860:CDS | 40.0% | |
| TGGAGTTGAACCCCAATTAT+GGG | + | chr8_3:7604921-7604940 | Msa1273860:CDS | 40.0% | |
| CCATATCTTGCCCATAATTG+GGG | - | chr8_3:7604934-7604953 | None:intergenic | 40.0% | |
| TTCCTGTTATGAAACTAGGG+GGG | - | chr8_3:7605026-7605045 | None:intergenic | 40.0% | |
| TCCAAGTTCGGTCATGTTAA+GGG | - | chr8_3:7605292-7605311 | None:intergenic | 40.0% | |
| ATCCAAGTTCGGTCATGTTA+AGG | - | chr8_3:7605293-7605312 | None:intergenic | 40.0% | |
| CTGCAAAGTCATTGTATCTC+TGG | + | chr8_3:7605454-7605473 | Msa1273860:intron | 40.0% | |
| CTCGAAGATATGGTAAAAGC+AGG | + | chr8_3:7605642-7605661 | Msa1273860:CDS | 40.0% | |
| CGAAGATATGGTAAAAGCAG+GGG | + | chr8_3:7605644-7605663 | Msa1273860:CDS | 40.0% | |
| TGTTATTACAGTGCGACTCT+TGG | + | chr8_3:7605738-7605757 | Msa1273860:three_prime_UTR | 40.0% | |
| !! | TATGTATCGACTAAGCAACC+TGG | + | chr8_3:7605922-7605941 | Msa1273860:three_prime_UTR | 40.0% |
| TGGGTCTTTGCTTGAGTAGT+TGG | + | chr8_3:7602980-7602999 | Msa1273860:intron | 45.0% | |
| !!! | ATTTTGGTTGCAGCATGCTG+CGG | + | chr8_3:7603286-7603305 | Msa1273860:intron | 45.0% |
| ATTTCGTCCGAAATTGCTGG+TGG | + | chr8_3:7603379-7603398 | Msa1273860:intron | 45.0% | |
| TTTCGTCCGAAATTGCTGGT+GGG | + | chr8_3:7603380-7603399 | Msa1273860:intron | 45.0% | |
| GCAAAAAATTGTGGAGAGGG+AGG | - | chr8_3:7603427-7603446 | None:intergenic | 45.0% | |
| ! | GGTATAGTGGGGTGCTTAAT+TGG | + | chr8_3:7603479-7603498 | Msa1273860:intron | 45.0% |
| CCATGTAGTTGGTTGAACAG+AGG | - | chr8_3:7603527-7603546 | None:intergenic | 45.0% | |
| CCTCTGTTCAACCAACTACA+TGG | + | chr8_3:7603524-7603543 | Msa1273860:intron | 45.0% | |
| ! | AGCTGTTGCTTCCAAAGTCT+AGG | + | chr8_3:7603839-7603858 | Msa1273860:intron | 45.0% |
| GGATGGATCAACCTAGACTT+TGG | - | chr8_3:7603853-7603872 | None:intergenic | 45.0% | |
| AGCAAAAACTGGTCAAGTCG+TGG | + | chr8_3:7604012-7604031 | Msa1273860:intron | 45.0% | |
| TCAAGTCGTGGCTACTTCAT+TGG | + | chr8_3:7604024-7604043 | Msa1273860:intron | 45.0% | |
| GTTAACATAGCCAACCTCCT+TGG | - | chr8_3:7604131-7604150 | None:intergenic | 45.0% | |
| CTATGTTAACCGCCCACTAA+AGG | + | chr8_3:7604141-7604160 | Msa1273860:intron | 45.0% | |
| GTTGACATTTGGCCCTTTAG+TGG | - | chr8_3:7604157-7604176 | None:intergenic | 45.0% | |
| CTACTTGGGCAGTTGACATT+TGG | - | chr8_3:7604168-7604187 | None:intergenic | 45.0% | |
| TACCTCCCAAAATTAGGCCT+AGG | - | chr8_3:7604199-7604218 | None:intergenic | 45.0% | |
| !! | TATATGCAAGAGGTGTCCTG+AGG | + | chr8_3:7604217-7604236 | Msa1273860:intron | 45.0% |
| !! | ATATGCAAGAGGTGTCCTGA+GGG | + | chr8_3:7604218-7604237 | Msa1273860:intron | 45.0% |
| ! | TTTTGCCAAAAGCAGAGAGG+AGG | + | chr8_3:7604242-7604261 | Msa1273860:intron | 45.0% |
| GCTTCTATGTGAAGCATAGG+GGG | + | chr8_3:7604354-7604373 | Msa1273860:intron | 45.0% | |
| !! | GCTCTTTAGCTTGCATCGTT+AGG | + | chr8_3:7604559-7604578 | Msa1273860:intron | 45.0% |
| ATGCCTTGTGATGACTGTTG+AGG | + | chr8_3:7604600-7604619 | Msa1273860:intron | 45.0% | |
| TCACCTCAACAGTCATCACA+AGG | - | chr8_3:7604606-7604625 | None:intergenic | 45.0% | |
| GATCTAGGAAAGCAATGGCA+TGG | + | chr8_3:7604649-7604668 | Msa1273860:intron | 45.0% | |
| GTTCAACTCCACTGCATTCA+CGG | - | chr8_3:7604912-7604931 | None:intergenic | 45.0% | |
| GTGGAGTTGAACCCCAATTA+TGG | + | chr8_3:7604920-7604939 | Msa1273860:CDS | 45.0% | |
| CCCCAATTATGGGCAAGATA+TGG | + | chr8_3:7604931-7604950 | Msa1273860:CDS | 45.0% | |
| TCCTGTTATGAAACTAGGGG+GGG | - | chr8_3:7605025-7605044 | None:intergenic | 45.0% | |
| !! | CGTTGAGAAAGGCATCAAAC+TGG | + | chr8_3:7605587-7605606 | Msa1273860:CDS | 45.0% |
| !! | GAGAAAGGCATCAAACTGGA+AGG | + | chr8_3:7605591-7605610 | Msa1273860:CDS | 45.0% |
| ! | CATCAAACTGGAAGGCATGA+CGG | + | chr8_3:7605599-7605618 | Msa1273860:CDS | 45.0% |
| TGCTGCGGCCGTTTATATTG+TGG | + | chr8_3:7603301-7603320 | Msa1273860:intron | 50.0% | |
| TTCGTCCGAAATTGCTGGTG+GGG | + | chr8_3:7603381-7603400 | Msa1273860:intron | 50.0% | |
| AGGCACATTTGCCTGCATCT+TGG | + | chr8_3:7603922-7603941 | Msa1273860:intron | 50.0% | |
| ATAGGACAAGGCTGATGCCA+AGG | + | chr8_3:7604111-7604130 | Msa1273860:intron | 50.0% | |
| ACATTTGGCCCTTTAGTGGG+CGG | - | chr8_3:7604153-7604172 | None:intergenic | 50.0% | |
| TGTCAACTGCCCAAGTAGCT+AGG | + | chr8_3:7604170-7604189 | Msa1273860:intron | 50.0% | |
| GTCAACTGCCCAAGTAGCTA+GGG | + | chr8_3:7604171-7604190 | Msa1273860:intron | 50.0% | |
| ! | AGGGAGCCTAGGCCTAATTT+TGG | + | chr8_3:7604190-7604209 | Msa1273860:intron | 50.0% |
| ! | GGGAGCCTAGGCCTAATTTT+GGG | + | chr8_3:7604191-7604210 | Msa1273860:intron | 50.0% |
| ! | AGCCTAGGCCTAATTTTGGG+AGG | + | chr8_3:7604194-7604213 | Msa1273860:intron | 50.0% |
| !! | TATGCAAGAGGTGTCCTGAG+GGG | + | chr8_3:7604219-7604238 | Msa1273860:intron | 50.0% |
| ! | TGCTTTTGGCAAAACCCCTC+AGG | - | chr8_3:7604236-7604255 | None:intergenic | 50.0% |
| ! | GGGTTTTGCCAAAAGCAGAG+AGG | + | chr8_3:7604239-7604258 | Msa1273860:intron | 50.0% |
| AGAGGAGGATGCGAGAGATA+AGG | + | chr8_3:7604257-7604276 | Msa1273860:intron | 50.0% | |
| GATGCAAGCTAAAGAGCCAC+TGG | - | chr8_3:7604556-7604575 | None:intergenic | 50.0% | |
| AGGAAAGCAATGGCATGGAG+AGG | + | chr8_3:7604654-7604673 | Msa1273860:intron | 50.0% | |
| ATGAGCTTGCAGGAGATGAC+TGG | - | chr8_3:7604722-7604741 | None:intergenic | 50.0% | |
| AACCTTGCAGATGAGCTTGC+AGG | - | chr8_3:7604732-7604751 | None:intergenic | 50.0% | |
| TCCCCCCCTAGTTTCATAAC+AGG | + | chr8_3:7605021-7605040 | Msa1273860:intron | 50.0% | |
| GCCCTTAACATGACCGAACT+TGG | + | chr8_3:7605288-7605307 | Msa1273860:intron | 50.0% | |
| CCTTTCTCAACGCCCAAATC+TGG | - | chr8_3:7605579-7605598 | None:intergenic | 50.0% | |
| !! | CCAGATTTGGGCGTTGAGAA+AGG | + | chr8_3:7605576-7605595 | Msa1273860:intron | 50.0% |
| TGTGGTAAAGTGTGGCTGGC+TGG | + | chr8_3:7603319-7603338 | Msa1273860:intron | 55.0% | |
| TCCGAAATTGCTGGTGGGGT+GGG | + | chr8_3:7603385-7603404 | Msa1273860:intron | 55.0% | |
| AAGGCTGATGCCAAGGAGGT+TGG | + | chr8_3:7604118-7604137 | Msa1273860:intron | 55.0% | |
| CCTAGGCTCCCTAGCTACTT+GGG | - | chr8_3:7604182-7604201 | None:intergenic | 55.0% | |
| ! | CGCATCCTCCTCTCTGCTTT+TGG | - | chr8_3:7604250-7604269 | None:intergenic | 55.0% |
| CTCCTGCAAGCTCATCTGCA+AGG | + | chr8_3:7604727-7604746 | Msa1273860:CDS | 55.0% | |
| GTCCGAAATTGCTGGTGGGG+TGG | + | chr8_3:7603384-7603403 | Msa1273860:intron | 60.0% | |
| CCCCACCCCACCAGCAATTT+CGG | - | chr8_3:7603389-7603408 | None:intergenic | 60.0% | |
| CCGAAATTGCTGGTGGGGTG+GGG | + | chr8_3:7603386-7603405 | Msa1273860:intron | 60.0% | |
| CGAAATTGCTGGTGGGGTGG+GGG | + | chr8_3:7603387-7603406 | Msa1273860:intron | 60.0% | |
| GGACAAGGCTGATGCCAAGG+AGG | + | chr8_3:7604114-7604133 | Msa1273860:intron | 60.0% | |
| CCCAAGTAGCTAGGGAGCCT+AGG | + | chr8_3:7604179-7604198 | Msa1273860:intron | 60.0% | |
| GCCTAGGCTCCCTAGCTACT+TGG | - | chr8_3:7604183-7604202 | None:intergenic | 60.0% | |
| AATTGCTGGTGGGGTGGGGG+TGG | + | chr8_3:7603390-7603409 | Msa1273860:intron | 65.0% | |
| ATTGCTGGTGGGGTGGGGGT+GGG | + | chr8_3:7603391-7603410 | Msa1273860:intron | 65.0% | |
| TTGCTGGTGGGGTGGGGGTG+GGG | + | chr8_3:7603392-7603411 | Msa1273860:intron | 70.0% | |
| TGCTGGTGGGGTGGGGGTGG+GGG | + | chr8_3:7603393-7603412 | Msa1273860:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 7602552 | 7605994 | 7602552 | ID=Msa1273860;Name=Msa1273860 |
| chr8_3 | mRNA | 7602552 | 7605994 | 7602552 | ID=Msa1273860-mRNA-1;Parent=Msa1273860;Name=Msa1273860-mRNA-1;_AED=0.00;_eAED=0.00;_QI=110|1|1|1|0.66|0.75|4|311|98 |
| chr8_3 | exon | 7602552 | 7602654 | 7602552 | ID=Msa1273860-mRNA-1:exon:3016;Parent=Msa1273860-mRNA-1 |
| chr8_3 | exon | 7604656 | 7604748 | 7604656 | ID=Msa1273860-mRNA-1:exon:3017;Parent=Msa1273860-mRNA-1 |
| chr8_3 | exon | 7604846 | 7604952 | 7604846 | ID=Msa1273860-mRNA-1:exon:3018;Parent=Msa1273860-mRNA-1 |
| chr8_3 | exon | 7605580 | 7605994 | 7605580 | ID=Msa1273860-mRNA-1:exon:3019;Parent=Msa1273860-mRNA-1 |
| chr8_3 | five_prime_UTR | 7602552 | 7602654 | 7602552 | ID=Msa1273860-mRNA-1:five_prime_utr;Parent=Msa1273860-mRNA-1 |
| chr8_3 | five_prime_UTR | 7604656 | 7604662 | 7604656 | ID=Msa1273860-mRNA-1:five_prime_utr;Parent=Msa1273860-mRNA-1 |
| chr8_3 | CDS | 7604663 | 7604748 | 7604663 | ID=Msa1273860-mRNA-1:cds;Parent=Msa1273860-mRNA-1 |
| chr8_3 | CDS | 7604846 | 7604952 | 7604846 | ID=Msa1273860-mRNA-1:cds;Parent=Msa1273860-mRNA-1 |
| chr8_3 | CDS | 7605580 | 7605683 | 7605580 | ID=Msa1273860-mRNA-1:cds;Parent=Msa1273860-mRNA-1 |
| chr8_3 | three_prime_UTR | 7605684 | 7605994 | 7605684 | ID=Msa1273860-mRNA-1:three_prime_utr;Parent=Msa1273860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
