Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230940 | XP_013444156.1 | 98.980 | 98 | 1 | 0 | 1 | 98 | 1 | 98 | 1.63e-64 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230940 | sp|Q9FIJ2|NDUA2_ARATH | 69.474 | 95 | 29 | 0 | 1 | 95 | 1 | 95 | 6.90e-49 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230940 | A0A072TMV0 | 98.980 | 98 | 1 | 0 | 1 | 98 | 1 | 98 | 7.78e-65 | 200 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1230940 | Msa1231010 | 0.927264 | 1.496241e-91 | -8.615850e-47 |
| Msa1230940 | Msa1273860 | 0.842007 | 3.363030e-58 | -8.615850e-47 |
| Msa1230940 | Msa1311800 | 0.912308 | 2.261325e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230940 | MtrunA17_Chr8g0339811 | 98.980 | 98 | 1 | 0 | 1 | 98 | 1 | 98 | 1.50e-68 | 200 |
| Msa1230940 | MtrunA17_Chr2g0294481 | 92.632 | 95 | 7 | 0 | 1 | 95 | 1 | 95 | 9.02e-54 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230940 | AT5G47890.1 | 69.474 | 95 | 29 | 0 | 1 | 95 | 1 | 95 | 7.01e-50 | 153 |
Find 37 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGATCAATATTGGCAATTT+TGG | -0.001659 | 8_2:-7014345 | None:intergenic |
| ACGGATTAAATCTATTTATT+TGG | 0.121925 | 8_2:+7015304 | Msa1230940:three_prime_UTR |
| TACCATATCTTGCCCATAAT+TGG | 0.178345 | 8_2:-7014389 | None:intergenic |
| GTGGAGTTGAACCCCAATTA+TGG | 0.257922 | 8_2:+7014376 | Msa1230940:CDS |
| ATTTGTTGAAAAGAATTATA+CGG | 0.319148 | 8_2:+7014305 | Msa1230940:CDS |
| ACCATATCTTGCCCATAATT+GGG | 0.333987 | 8_2:-7014388 | None:intergenic |
| CTGCATTCACGGATCAATAT+TGG | 0.349255 | 8_2:-7014354 | None:intergenic |
| AACCTTGCAGATGAGCTTGC+AGG | 0.367566 | 8_2:-7014182 | None:intergenic |
| CCCCAATTATGGGCAAGATA+TGG | 0.376635 | 8_2:+7014387 | Msa1230940:CDS |
| TGAACTCTTCTTCTGATCTT+CGG | 0.383237 | 8_2:+7012074 | Msa1230940:five_prime_UTR |
| AGCTTCAACTTAAACTCAAC+AGG | 0.397065 | 8_2:-7015232 | None:intergenic |
| CAAAGAACATAAAAGAGCTT+CGG | 0.421200 | 8_2:+7014138 | Msa1230940:CDS |
| TGGAGTTGAACCCCAATTAT+GGG | 0.437531 | 8_2:+7014377 | Msa1230940:CDS |
| GATTTCTTACTCACTGTTTG+TGG | 0.442906 | 8_2:-7012100 | None:intergenic |
| GTTCAACTCCACTGCATTCA+CGG | 0.460928 | 8_2:-7014365 | None:intergenic |
| CCAGATTTGGGCGTTGAGAA+AGG | 0.467692 | 8_2:+7015031 | Msa1230940:intron |
| CTCGAAGATATGGTAAAAGC+AGG | 0.488900 | 8_2:+7015097 | Msa1230940:CDS |
| ATAGATAGATTGATACCCTC+TGG | 0.493703 | 8_2:-7012021 | None:intergenic |
| TGTTATTACAGTGCGACTCT+TGG | 0.501310 | 8_2:+7015193 | Msa1230940:three_prime_UTR |
| CGTTGAGAAAGGCATCAAAC+TGG | 0.502706 | 8_2:+7015042 | Msa1230940:CDS |
| ATGAGCTTGCAGGAGATGAC+TGG | 0.511150 | 8_2:-7014172 | None:intergenic |
| TAGATAGATTGATACCCTCT+GGG | 0.550031 | 8_2:-7012020 | None:intergenic |
| CCATATCTTGCCCATAATTG+GGG | 0.562541 | 8_2:-7014387 | None:intergenic |
| TCGAAGATATGGTAAAAGCA+GGG | 0.571911 | 8_2:+7015098 | Msa1230940:CDS |
| CTCCTGCAAGCTCATCTGCA+AGG | 0.602497 | 8_2:+7014180 | Msa1230940:CDS |
| GATCTAGGAAAGCAATGGCA+TGG | 0.605625 | 8_2:+7014102 | Msa1230940:intron |
| TGAGATATTGATTCAAAACA+CGG | 0.613809 | 8_2:+7015285 | Msa1230940:three_prime_UTR |
| GAGAAAGGCATCAAACTGGA+AGG | 0.620188 | 8_2:+7015046 | Msa1230940:CDS |
| ACTTCGATCTAGGAAAGCAA+TGG | 0.625947 | 8_2:+7014097 | Msa1230940:intron |
| CGAAGATATGGTAAAAGCAG+GGG | 0.650048 | 8_2:+7015099 | Msa1230940:CDS |
| TAATCAAATCAATCCCCAGA+GGG | 0.654912 | 8_2:+7012006 | Msa1230940:five_prime_UTR |
| AGGAAAGCAATGGCATGGAG+AGG | 0.655080 | 8_2:+7014107 | Msa1230940:intron |
| TCAATATCTCACAATAAACA+TGG | 0.658161 | 8_2:-7015273 | None:intergenic |
| TATGTATCGACTAAGCAACC+TGG | 0.659217 | 8_2:+7015377 | Msa1230940:three_prime_UTR |
| ATATTGATCCGTGAATGCAG+TGG | 0.692040 | 8_2:+7014357 | Msa1230940:CDS |
| AGATAGATTGATACCCTCTG+GGG | 0.722111 | 8_2:-7012019 | None:intergenic |
| GTAATCAAATCAATCCCCAG+AGG | 0.733302 | 8_2:+7012005 | Msa1230940:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATGAAAATTAAGATA+GGG | - | chr8_2:7014417-7014436 | None:intergenic | 10.0% |
| !! | AAAATAATGAAAATTAAGAT+AGG | - | chr8_2:7014418-7014437 | None:intergenic | 10.0% |
| !!! | ATAATCTATTTCTATAACAA+AGG | - | chr8_2:7012348-7012367 | None:intergenic | 15.0% |
| !!! | ATTATAATGCTTTGAAATTT+TGG | - | chr8_2:7014233-7014252 | None:intergenic | 15.0% |
| !!! | ATTATTATTTTTGTTATCTC+AGG | + | chr8_2:7014280-7014299 | Msa1230940:intron | 15.0% |
| !!! | TTATTATTTTTGTTATCTCA+GGG | + | chr8_2:7014281-7014300 | Msa1230940:intron | 15.0% |
| !!! | ATTTGTTGAAAAGAATTATA+CGG | + | chr8_2:7014305-7014324 | Msa1230940:CDS | 15.0% |
| !! | AATAATGAAAATTAAGATAG+GGG | - | chr8_2:7014416-7014435 | None:intergenic | 15.0% |
| !! | TATTATAATATACACAACTT+AGG | - | chr8_2:7014783-7014802 | None:intergenic | 15.0% |
| !! | TGTATATTATAATATCCATT+CGG | + | chr8_2:7014789-7014808 | Msa1230940:intron | 15.0% |
| !! | GAAATAGAAAAACTTGTAAT+TGG | - | chr8_2:7012148-7012167 | None:intergenic | 20.0% |
| !!! | TATTTGAGACTGTTTTTTAT+AGG | + | chr8_2:7012242-7012261 | Msa1230940:intron | 20.0% |
| !!! | TTGCTCTTTTTATTACATTT+AGG | + | chr8_2:7012619-7012638 | Msa1230940:intron | 20.0% |
| !! | AAAATAATAGCCAAACTTAT+AGG | - | chr8_2:7012903-7012922 | None:intergenic | 20.0% |
| !!! | CTATTCAAAATTGATTTGAA+TGG | - | chr8_2:7013548-7013567 | None:intergenic | 20.0% |
| !!! | CATTCAAATCAATTTTGAAT+AGG | + | chr8_2:7013546-7013565 | Msa1230940:intron | 20.0% |
| !! | TAATGAAGAAAACAGTAAAA+GGG | - | chr8_2:7013854-7013873 | None:intergenic | 20.0% |
| !! | ATAATGAAGAAAACAGTAAA+AGG | - | chr8_2:7013855-7013874 | None:intergenic | 20.0% |
| !! | AAATATTATAACTTCGATCT+AGG | + | chr8_2:7014087-7014106 | Msa1230940:intron | 20.0% |
| !!! | GATATATTTTTTCCTTTCTT+TGG | + | chr8_2:7014206-7014225 | Msa1230940:intron | 20.0% |
| !! | ATGTAGTTATGAGAATATAA+TGG | + | chr8_2:7014584-7014603 | Msa1230940:intron | 20.0% |
| !!! | TTTCAATATTATCCCAATTT+TGG | + | chr8_2:7014631-7014650 | Msa1230940:intron | 20.0% |
| !!! | TTTTTTTCTTAATCCAAGTT+CGG | - | chr8_2:7014759-7014778 | None:intergenic | 20.0% |
| !!! | ACGGATTAAATCTATTTATT+TGG | + | chr8_2:7015304-7015323 | Msa1230940:three_prime_UTR | 20.0% |
| ! | AAAATCAAAACACGTGAAAA+TGG | - | chr8_2:7012125-7012144 | None:intergenic | 25.0% |
| !!! | CTTATTTTCATAAGTTCTTC+AGG | + | chr8_2:7012267-7012286 | Msa1230940:intron | 25.0% |
| ! | TTATACTCAATGTCATTCAT+GGG | - | chr8_2:7012413-7012432 | None:intergenic | 25.0% |
| ! | ATTATACTCAATGTCATTCA+TGG | - | chr8_2:7012414-7012433 | None:intergenic | 25.0% |
| ! | TGAATGACATTGAGTATAAT+TGG | + | chr8_2:7012414-7012433 | Msa1230940:intron | 25.0% |
| ! | GAATGACATTGAGTATAATT+GGG | + | chr8_2:7012415-7012434 | Msa1230940:intron | 25.0% |
| ! | ATAAGTGTTAGTAAGTTTCT+TGG | + | chr8_2:7012517-7012536 | Msa1230940:intron | 25.0% |
| ! | TTCTTGGTATAATAGAGTAT+TGG | + | chr8_2:7012533-7012552 | Msa1230940:intron | 25.0% |
| !! | TCTTGGTATAATAGAGTATT+GGG | + | chr8_2:7012534-7012553 | Msa1230940:intron | 25.0% |
| ! | TCAAGTCTATTGTTAGTTAT+AGG | + | chr8_2:7012703-7012722 | Msa1230940:intron | 25.0% |
| ! | CAAGTCTATTGTTAGTTATA+GGG | + | chr8_2:7012704-7012723 | Msa1230940:intron | 25.0% |
| ! | ACTTATAGGCAAAAAATTGT+GGG | - | chr8_2:7012889-7012908 | None:intergenic | 25.0% |
| ! | AACTTATAGGCAAAAAATTG+TGG | - | chr8_2:7012890-7012909 | None:intergenic | 25.0% |
| !!! | CAATTTTTTGCCTATAAGTT+TGG | + | chr8_2:7012890-7012909 | Msa1230940:intron | 25.0% |
| ! | TTAGTCATGGAAAAAAATCT+GGG | - | chr8_2:7013098-7013117 | None:intergenic | 25.0% |
| ! | TTTAGTCATGGAAAAAAATC+TGG | - | chr8_2:7013099-7013118 | None:intergenic | 25.0% |
| !!! | TTTTTTCCATGACTAAAAAG+TGG | + | chr8_2:7013102-7013121 | Msa1230940:intron | 25.0% |
| ! | TTAACTGAGAAATAGAAAAC+TGG | - | chr8_2:7013327-7013346 | None:intergenic | 25.0% |
| !! | TAAGATTTTATCAATGCTAG+TGG | - | chr8_2:7013431-7013450 | None:intergenic | 25.0% |
| ! | GTGTAAAATTATTAAGCTCA+TGG | + | chr8_2:7013499-7013518 | Msa1230940:intron | 25.0% |
| !! | AATCAATTTTGAATAGGACA+AGG | + | chr8_2:7013552-7013571 | Msa1230940:intron | 25.0% |
| ! | AATTTCCTGTTATGAAACTA+GGG | - | chr8_2:7014484-7014503 | None:intergenic | 25.0% |
| ! | AAATTTCCTGTTATGAAACT+AGG | - | chr8_2:7014485-7014504 | None:intergenic | 25.0% |
| !! | GTTTCATAACAGGAAATTTT+AGG | + | chr8_2:7014486-7014505 | Msa1230940:intron | 25.0% |
| ! | TACTGAAATTGGCATTATAA+GGG | - | chr8_2:7014881-7014900 | None:intergenic | 25.0% |
| ! | ATACTGAAATTGGCATTATA+AGG | - | chr8_2:7014882-7014901 | None:intergenic | 25.0% |
| !!! | TCATTCTCATTATTTTGTAC+TGG | + | chr8_2:7014968-7014987 | Msa1230940:intron | 25.0% |
| !! | CTTTTATTCACTGTATGAAA+GGG | + | chr8_2:7015147-7015166 | Msa1230940:three_prime_UTR | 25.0% |
| !! | GAAAGGGAATAAATGTTTTT+AGG | + | chr8_2:7015163-7015182 | Msa1230940:three_prime_UTR | 25.0% |
| ! | TCAATATCTCACAATAAACA+TGG | - | chr8_2:7015276-7015295 | None:intergenic | 25.0% |
| !!! | TGAGATATTGATTCAAAACA+CGG | + | chr8_2:7015285-7015304 | Msa1230940:three_prime_UTR | 25.0% |
| ! | CTTAAAAAGAATATTCTACC+AGG | - | chr8_2:7015398-7015417 | None:intergenic | 25.0% |
| GTTTATATTGTGGTAAAGTG+TGG | + | chr8_2:7012765-7012784 | Msa1230940:intron | 30.0% | |
| CTTATAGGCAAAAAATTGTG+GGG | - | chr8_2:7012888-7012907 | None:intergenic | 30.0% | |
| ! | GCTATTATTTTCATTCTGAC+AGG | + | chr8_2:7012912-7012931 | Msa1230940:intron | 30.0% |
| TTAATTGGAAATCGGAAACT+TGG | + | chr8_2:7012948-7012967 | Msa1230940:intron | 30.0% | |
| TAATTGGAAATCGGAAACTT+GGG | + | chr8_2:7012949-7012968 | Msa1230940:intron | 30.0% | |
| TGGCTATATACAATCTCAAA+GGG | - | chr8_2:7013070-7013089 | None:intergenic | 30.0% | |
| TAGTCATGGAAAAAAATCTG+GGG | - | chr8_2:7013097-7013116 | None:intergenic | 30.0% | |
| !!! | AAACTTCCACTTTTTAGTCA+TGG | - | chr8_2:7013111-7013130 | None:intergenic | 30.0% |
| CATCTCATGATAAATTCTCT+TGG | - | chr8_2:7013214-7013233 | None:intergenic | 30.0% | |
| CAAGAGAATTTATCATGAGA+TGG | + | chr8_2:7013212-7013231 | Msa1230940:intron | 30.0% | |
| TCTTGTAAACAACTACATGA+GGG | - | chr8_2:7013254-7013273 | None:intergenic | 30.0% | |
| ATCTTGTAAACAACTACATG+AGG | - | chr8_2:7013255-7013274 | None:intergenic | 30.0% | |
| AGTTGTTTACAAGATTGACA+AGG | + | chr8_2:7013260-7013279 | Msa1230940:intron | 30.0% | |
| CAGTTAAGAAAAAGTAGTAG+AGG | + | chr8_2:7013340-7013359 | Msa1230940:intron | 30.0% | |
| TATAACAATTACCAAGATGC+AGG | - | chr8_2:7013389-7013408 | None:intergenic | 30.0% | |
| ! | TTGATTTGAATGGTAGAAGT+TGG | - | chr8_2:7013538-7013557 | None:intergenic | 30.0% |
| TATCTGTCCATTAGATATGT+AGG | + | chr8_2:7013737-7013756 | Msa1230940:intron | 30.0% | |
| ACTCTTACCTACATATCTAA+TGG | - | chr8_2:7013747-7013766 | None:intergenic | 30.0% | |
| !! | GATATGTAGGTAAGAGTATT+AGG | + | chr8_2:7013750-7013769 | Msa1230940:intron | 30.0% |
| ATAATATGATTGTCTGTGAG+AGG | + | chr8_2:7013912-7013931 | Msa1230940:intron | 30.0% | |
| !! | GTATCTAGTATTGATTTGAC+TGG | - | chr8_2:7013987-7014006 | None:intergenic | 30.0% |
| AAATCAATACTAGATACCAG+TGG | + | chr8_2:7013990-7014009 | Msa1230940:intron | 30.0% | |
| CAAAGAACATAAAAGAGCTT+CGG | + | chr8_2:7014138-7014157 | Msa1230940:CDS | 30.0% | |
| !! | TGAAATTTTGGTCCAAAGAA+AGG | - | chr8_2:7014221-7014240 | None:intergenic | 30.0% |
| ! | GGATCAATATTGGCAATTTT+GGG | - | chr8_2:7014347-7014366 | None:intergenic | 30.0% |
| GAACATGTGAATGCAAATTA+TGG | - | chr8_2:7014459-7014478 | None:intergenic | 30.0% | |
| ATTTCCTGTTATGAAACTAG+GGG | - | chr8_2:7014483-7014502 | None:intergenic | 30.0% | |
| ! | TCATAACTACATCTCTAGAA+TGG | - | chr8_2:7014576-7014595 | None:intergenic | 30.0% |
| ! | TGTGGATTAAAGCCAAAATT+GGG | - | chr8_2:7014646-7014665 | None:intergenic | 30.0% |
| ! | TTGTGGATTAAAGCCAAAAT+TGG | - | chr8_2:7014647-7014666 | None:intergenic | 30.0% |
| GATTCGAGATATTGTTTGAA+GGG | - | chr8_2:7014707-7014726 | None:intergenic | 30.0% | |
| AGATTCGAGATATTGTTTGA+AGG | - | chr8_2:7014708-7014727 | None:intergenic | 30.0% | |
| TTCAAACAATATCTCGAATC+TGG | + | chr8_2:7014707-7014726 | Msa1230940:intron | 30.0% | |
| ! | GATTGTTACTTCCGATTAAT+TGG | + | chr8_2:7014816-7014835 | Msa1230940:intron | 30.0% |
| TTGACTACAAGCCAATTAAT+CGG | - | chr8_2:7014830-7014849 | None:intergenic | 30.0% | |
| !! | ATTAATTGGCTTGTAGTCAA+TGG | + | chr8_2:7014830-7014849 | Msa1230940:intron | 30.0% |
| ! | TAGTTTTCTAATCGCATTGT+AGG | - | chr8_2:7014856-7014875 | None:intergenic | 30.0% |
| CAGAGTAAGTATACTGAAAT+TGG | - | chr8_2:7014892-7014911 | None:intergenic | 30.0% | |
| GCTACAAGATATAATCAGAA+AGG | - | chr8_2:7014939-7014958 | None:intergenic | 30.0% | |
| TCCTTCTTTAATACCAGATT+TGG | + | chr8_2:7015018-7015037 | Msa1230940:intron | 30.0% | |
| CCTTCTTTAATACCAGATTT+GGG | + | chr8_2:7015019-7015038 | Msa1230940:intron | 30.0% | |
| ! | GACAGAACCACAAATTTTTA+AGG | + | chr8_2:7015072-7015091 | Msa1230940:CDS | 30.0% |
| TCGAGTACCTTAAAAATTTG+TGG | - | chr8_2:7015082-7015101 | None:intergenic | 30.0% | |
| !!! | TTTTAAGGTACTCGAAGATA+TGG | + | chr8_2:7015087-7015106 | Msa1230940:CDS | 30.0% |
| ! | GCTTTTATTCACTGTATGAA+AGG | + | chr8_2:7015146-7015165 | Msa1230940:three_prime_UTR | 30.0% |
| TAATCAAATCAATCCCCAGA+GGG | + | chr8_2:7012006-7012025 | Msa1230940:five_prime_UTR | 35.0% | |
| TAGATAGATTGATACCCTCT+GGG | - | chr8_2:7012023-7012042 | None:intergenic | 35.0% | |
| ATAGATAGATTGATACCCTC+TGG | - | chr8_2:7012024-7012043 | None:intergenic | 35.0% | |
| TGAACTCTTCTTCTGATCTT+CGG | + | chr8_2:7012074-7012093 | Msa1230940:five_prime_UTR | 35.0% | |
| GATTTCTTACTCACTGTTTG+TGG | - | chr8_2:7012103-7012122 | None:intergenic | 35.0% | |
| TCATAAGCGCTTATCATGAT+AGG | - | chr8_2:7012380-7012399 | None:intergenic | 35.0% | |
| ACTACTAAGCACATAGTTGA+TGG | + | chr8_2:7012651-7012670 | Msa1230940:intron | 35.0% | |
| ! | TTGATGGCTTGGATATCAAA+TGG | + | chr8_2:7012667-7012686 | Msa1230940:intron | 35.0% |
| ATTGTTAGTTATAGGGAGCA+TGG | + | chr8_2:7012711-7012730 | Msa1230940:intron | 35.0% | |
| TATATTTCGTCCGAAATTGC+TGG | + | chr8_2:7012830-7012849 | Msa1230940:intron | 35.0% | |
| TTTCATTCTGACAGGTATAG+TGG | + | chr8_2:7012920-7012939 | Msa1230940:intron | 35.0% | |
| TTCATTCTGACAGGTATAGT+GGG | + | chr8_2:7012921-7012940 | Msa1230940:intron | 35.0% | |
| AATTGGAAATCGGAAACTTG+GGG | + | chr8_2:7012950-7012969 | Msa1230940:intron | 35.0% | |
| AACCAACTACATGGTCAAAT+TGG | + | chr8_2:7012987-7013006 | Msa1230940:intron | 35.0% | |
| CTGGCTATATACAATCTCAA+AGG | - | chr8_2:7013071-7013090 | None:intergenic | 35.0% | |
| CTGAGAAATAGAAAACTGGA+TGG | - | chr8_2:7013323-7013342 | None:intergenic | 35.0% | |
| ! | AGTAGTAGAGGTACATAAAG+TGG | + | chr8_2:7013352-7013371 | Msa1230940:intron | 35.0% |
| TAGTGGTTCAATGATATTGG+GGG | - | chr8_2:7013414-7013433 | None:intergenic | 35.0% | |
| CTAGTGGTTCAATGATATTG+GGG | - | chr8_2:7013415-7013434 | None:intergenic | 35.0% | |
| GCTAGTGGTTCAATGATATT+GGG | - | chr8_2:7013416-7013435 | None:intergenic | 35.0% | |
| TGCTAGTGGTTCAATGATAT+TGG | - | chr8_2:7013417-7013436 | None:intergenic | 35.0% | |
| TATCAAGCAGAAGCAAAAAC+TGG | + | chr8_2:7013454-7013473 | Msa1230940:intron | 35.0% | |
| TGCATATACCTCCCAAAATT+AGG | - | chr8_2:7013658-7013677 | None:intergenic | 35.0% | |
| !! | TGTAGGTAAGAGTATTAGGA+TGG | + | chr8_2:7013754-7013773 | Msa1230940:intron | 35.0% |
| !! | GTAGGTAAGAGTATTAGGAT+GGG | + | chr8_2:7013755-7013774 | Msa1230940:intron | 35.0% |
| !! | CTGTTAACTTGTTACAACAG+AGG | + | chr8_2:7013781-7013800 | Msa1230940:intron | 35.0% |
| ! | CGGATCAATATTGGCAATTT+TGG | - | chr8_2:7014348-7014367 | None:intergenic | 35.0% |
| ACCATATCTTGCCCATAATT+GGG | - | chr8_2:7014391-7014410 | None:intergenic | 35.0% | |
| TACCATATCTTGCCCATAAT+TGG | - | chr8_2:7014392-7014411 | None:intergenic | 35.0% | |
| TTTCCTGTTATGAAACTAGG+GGG | - | chr8_2:7014482-7014501 | None:intergenic | 35.0% | |
| CTCAGAACAACAAATGTTTG+TGG | - | chr8_2:7014664-7014683 | None:intergenic | 35.0% | |
| AAGTAACAATCACAACCGAA+TGG | - | chr8_2:7014807-7014826 | None:intergenic | 35.0% | |
| CCCAAATCTGGTATTAAAGA+AGG | - | chr8_2:7015022-7015041 | None:intergenic | 35.0% | |
| TCGAAGATATGGTAAAAGCA+GGG | + | chr8_2:7015098-7015117 | Msa1230940:CDS | 35.0% | |
| AGCTTCAACTTAAACTCAAC+AGG | - | chr8_2:7015235-7015254 | None:intergenic | 35.0% | |
| GTAATCAAATCAATCCCCAG+AGG | + | chr8_2:7012005-7012024 | Msa1230940:five_prime_UTR | 40.0% | |
| AGATAGATTGATACCCTCTG+GGG | - | chr8_2:7012022-7012041 | None:intergenic | 40.0% | |
| !! | TAAGCACATAGTTGATGGCT+TGG | + | chr8_2:7012656-7012675 | Msa1230940:intron | 40.0% |
| !!! | GGGAGCATGGTTCTAAATTT+TGG | + | chr8_2:7012724-7012743 | Msa1230940:intron | 40.0% |
| ATATTGTGGTAAAGTGTGGC+TGG | + | chr8_2:7012769-7012788 | Msa1230940:intron | 40.0% | |
| TAGGCAAAAAATTGTGGGGA+GGG | - | chr8_2:7012884-7012903 | None:intergenic | 40.0% | |
| ATAGGCAAAAAATTGTGGGG+AGG | - | chr8_2:7012885-7012904 | None:intergenic | 40.0% | |
| TCATTCTGACAGGTATAGTG+GGG | + | chr8_2:7012922-7012941 | Msa1230940:intron | 40.0% | |
| ! | TGGGGTGCTTAATTGGAAAT+CGG | + | chr8_2:7012940-7012959 | Msa1230940:intron | 40.0% |
| AGCCAATTTGACCATGTAGT+TGG | - | chr8_2:7012992-7013011 | None:intergenic | 40.0% | |
| TTTAGATGCAGCAACATGGT+AGG | - | chr8_2:7013044-7013063 | None:intergenic | 40.0% | |
| GAGATTTAGATGCAGCAACA+TGG | - | chr8_2:7013048-7013067 | None:intergenic | 40.0% | |
| ! | GGAAAAAAATCTGGGGTTTC+TGG | - | chr8_2:7013090-7013109 | None:intergenic | 40.0% |
| AACTATTGCGACTGAACTGA+AGG | + | chr8_2:7013138-7013157 | Msa1230940:intron | 40.0% | |
| ! | GCTATTGACTGTTGTCTATG+TGG | - | chr8_2:7013192-7013211 | None:intergenic | 40.0% |
| ! | AGTAGAGGTACATAAAGTGG+AGG | + | chr8_2:7013355-7013374 | Msa1230940:intron | 40.0% |
| TATGTTAACCGCCCACTAAA+GGG | + | chr8_2:7013595-7013614 | Msa1230940:intron | 40.0% | |
| TTGACATTTGGCCCTTTAGT+GGG | - | chr8_2:7013609-7013628 | None:intergenic | 40.0% | |
| !! | TTTTGGGAGGTATATGCAAG+AGG | + | chr8_2:7013660-7013679 | Msa1230940:intron | 40.0% |
| AGTGCTTCTATGTGAAGCAT+AGG | + | chr8_2:7013804-7013823 | Msa1230940:intron | 40.0% | |
| GTGCTTCTATGTGAAGCATA+GGG | + | chr8_2:7013805-7013824 | Msa1230940:intron | 40.0% | |
| TGCTTCTATGTGAAGCATAG+GGG | + | chr8_2:7013806-7013825 | Msa1230940:intron | 40.0% | |
| !!! | CATAGGGGGCATGAATTTTT+TGG | + | chr8_2:7013821-7013840 | Msa1230940:intron | 40.0% |
| ATTGTCTGTGAGAGGATGTA+AGG | + | chr8_2:7013920-7013939 | Msa1230940:intron | 40.0% | |
| TTGTCTGTGAGAGGATGTAA+GGG | + | chr8_2:7013921-7013940 | Msa1230940:intron | 40.0% | |
| ACTTCGATCTAGGAAAGCAA+TGG | + | chr8_2:7014097-7014116 | Msa1230940:intron | 40.0% | |
| CTGCATTCACGGATCAATAT+TGG | - | chr8_2:7014357-7014376 | None:intergenic | 40.0% | |
| ATATTGATCCGTGAATGCAG+TGG | + | chr8_2:7014357-7014376 | Msa1230940:CDS | 40.0% | |
| TGGAGTTGAACCCCAATTAT+GGG | + | chr8_2:7014377-7014396 | Msa1230940:CDS | 40.0% | |
| CCATATCTTGCCCATAATTG+GGG | - | chr8_2:7014390-7014409 | None:intergenic | 40.0% | |
| TTCCTGTTATGAAACTAGGG+GGG | - | chr8_2:7014481-7014500 | None:intergenic | 40.0% | |
| TCCAAGTTCGGTCATGTTAA+GGG | - | chr8_2:7014747-7014766 | None:intergenic | 40.0% | |
| ATCCAAGTTCGGTCATGTTA+AGG | - | chr8_2:7014748-7014767 | None:intergenic | 40.0% | |
| CTGCAAAGTCATTGTATCTC+TGG | + | chr8_2:7014909-7014928 | Msa1230940:intron | 40.0% | |
| CTCGAAGATATGGTAAAAGC+AGG | + | chr8_2:7015097-7015116 | Msa1230940:CDS | 40.0% | |
| CGAAGATATGGTAAAAGCAG+GGG | + | chr8_2:7015099-7015118 | Msa1230940:CDS | 40.0% | |
| TGTTATTACAGTGCGACTCT+TGG | + | chr8_2:7015193-7015212 | Msa1230940:three_prime_UTR | 40.0% | |
| !! | TATGTATCGACTAAGCAACC+TGG | + | chr8_2:7015377-7015396 | Msa1230940:three_prime_UTR | 40.0% |
| TGGGTCTTTGCTTGAGTAGT+TGG | + | chr8_2:7012434-7012453 | Msa1230940:intron | 45.0% | |
| !!! | ATTTTGGTTGCAGCATGCTG+CGG | + | chr8_2:7012740-7012759 | Msa1230940:intron | 45.0% |
| TGCTGCGGCAGTTTATATTG+TGG | + | chr8_2:7012755-7012774 | Msa1230940:intron | 45.0% | |
| ATTTCGTCCGAAATTGCTGG+TGG | + | chr8_2:7012833-7012852 | Msa1230940:intron | 45.0% | |
| TTTCGTCCGAAATTGCTGGT+GGG | + | chr8_2:7012834-7012853 | Msa1230940:intron | 45.0% | |
| AAAAAATTGTGGGGAGGGAG+GGG | - | chr8_2:7012879-7012898 | None:intergenic | 45.0% | |
| CAAAAAATTGTGGGGAGGGA+GGG | - | chr8_2:7012880-7012899 | None:intergenic | 45.0% | |
| ! | GGTATAGTGGGGTGCTTAAT+TGG | + | chr8_2:7012933-7012952 | Msa1230940:intron | 45.0% |
| CCATGTAGTTGGTTGAACAG+AGG | - | chr8_2:7012981-7013000 | None:intergenic | 45.0% | |
| CCTCTGTTCAACCAACTACA+TGG | + | chr8_2:7012978-7012997 | Msa1230940:intron | 45.0% | |
| ! | AGCTGTTGCTTCCAAAGTCT+AGG | + | chr8_2:7013292-7013311 | Msa1230940:intron | 45.0% |
| GGATGGATCAACCTAGACTT+TGG | - | chr8_2:7013306-7013325 | None:intergenic | 45.0% | |
| AGCAAAAACTGGTCAAGTCG+TGG | + | chr8_2:7013465-7013484 | Msa1230940:intron | 45.0% | |
| TCAAGTCGTGGCTACTTCAT+TGG | + | chr8_2:7013477-7013496 | Msa1230940:intron | 45.0% | |
| GTTAACATAGCCAACCTCCT+TGG | - | chr8_2:7013584-7013603 | None:intergenic | 45.0% | |
| CTATGTTAACCGCCCACTAA+AGG | + | chr8_2:7013594-7013613 | Msa1230940:intron | 45.0% | |
| GTTGACATTTGGCCCTTTAG+TGG | - | chr8_2:7013610-7013629 | None:intergenic | 45.0% | |
| CTACTTGGGCAGTTGACATT+TGG | - | chr8_2:7013621-7013640 | None:intergenic | 45.0% | |
| TACCTCCCAAAATTAGGCCT+AGG | - | chr8_2:7013652-7013671 | None:intergenic | 45.0% | |
| !! | TATATGCAAGAGGTGTCCTG+AGG | + | chr8_2:7013670-7013689 | Msa1230940:intron | 45.0% |
| !! | ATATGCAAGAGGTGTCCTGA+GGG | + | chr8_2:7013671-7013690 | Msa1230940:intron | 45.0% |
| ! | TTTTGCCAAAAGCAGAGAGG+AGG | + | chr8_2:7013695-7013714 | Msa1230940:intron | 45.0% |
| GCTTCTATGTGAAGCATAGG+GGG | + | chr8_2:7013807-7013826 | Msa1230940:intron | 45.0% | |
| !!! | AGGGGGCATGAATTTTTTGG+AGG | + | chr8_2:7013824-7013843 | Msa1230940:intron | 45.0% |
| !!! | GGGGGCATGAATTTTTTGGA+GGG | + | chr8_2:7013825-7013844 | Msa1230940:intron | 45.0% |
| !! | GCTCTTTAGCTTGCATCGTT+AGG | + | chr8_2:7014012-7014031 | Msa1230940:intron | 45.0% |
| ATGCCTTGTGATGACTGTTG+AGG | + | chr8_2:7014053-7014072 | Msa1230940:intron | 45.0% | |
| TCACCTCAACAGTCATCACA+AGG | - | chr8_2:7014059-7014078 | None:intergenic | 45.0% | |
| GATCTAGGAAAGCAATGGCA+TGG | + | chr8_2:7014102-7014121 | Msa1230940:intron | 45.0% | |
| GTTCAACTCCACTGCATTCA+CGG | - | chr8_2:7014368-7014387 | None:intergenic | 45.0% | |
| GTGGAGTTGAACCCCAATTA+TGG | + | chr8_2:7014376-7014395 | Msa1230940:CDS | 45.0% | |
| CCCCAATTATGGGCAAGATA+TGG | + | chr8_2:7014387-7014406 | Msa1230940:CDS | 45.0% | |
| TTCCCCCCTAGTTTCATAAC+AGG | + | chr8_2:7014476-7014495 | Msa1230940:intron | 45.0% | |
| !! | CGTTGAGAAAGGCATCAAAC+TGG | + | chr8_2:7015042-7015061 | Msa1230940:CDS | 45.0% |
| !! | GAGAAAGGCATCAAACTGGA+AGG | + | chr8_2:7015046-7015065 | Msa1230940:CDS | 45.0% |
| TTCGTCCGAAATTGCTGGTG+GGG | + | chr8_2:7012835-7012854 | Msa1230940:intron | 50.0% | |
| GCAAAAAATTGTGGGGAGGG+AGG | - | chr8_2:7012881-7012900 | None:intergenic | 50.0% | |
| AGGCACATTTGCCTGCATCT+TGG | + | chr8_2:7013375-7013394 | Msa1230940:intron | 50.0% | |
| ATAGGACAAGGCTGATGCCA+AGG | + | chr8_2:7013564-7013583 | Msa1230940:intron | 50.0% | |
| ACATTTGGCCCTTTAGTGGG+CGG | - | chr8_2:7013606-7013625 | None:intergenic | 50.0% | |
| TGTCAACTGCCCAAGTAGCT+AGG | + | chr8_2:7013623-7013642 | Msa1230940:intron | 50.0% | |
| GTCAACTGCCCAAGTAGCTA+GGG | + | chr8_2:7013624-7013643 | Msa1230940:intron | 50.0% | |
| ! | AGGGAGCCTAGGCCTAATTT+TGG | + | chr8_2:7013643-7013662 | Msa1230940:intron | 50.0% |
| ! | GGGAGCCTAGGCCTAATTTT+GGG | + | chr8_2:7013644-7013663 | Msa1230940:intron | 50.0% |
| ! | AGCCTAGGCCTAATTTTGGG+AGG | + | chr8_2:7013647-7013666 | Msa1230940:intron | 50.0% |
| !! | TATGCAAGAGGTGTCCTGAG+GGG | + | chr8_2:7013672-7013691 | Msa1230940:intron | 50.0% |
| ! | TGCTTTTGGCAAAACCCCTC+AGG | - | chr8_2:7013689-7013708 | None:intergenic | 50.0% |
| ! | GGGTTTTGCCAAAAGCAGAG+AGG | + | chr8_2:7013692-7013711 | Msa1230940:intron | 50.0% |
| AGAGGAGGATGCGAGAGATA+AGG | + | chr8_2:7013710-7013729 | Msa1230940:intron | 50.0% | |
| GATGCAAGCTAAAGAGCCAC+TGG | - | chr8_2:7014009-7014028 | None:intergenic | 50.0% | |
| AGGAAAGCAATGGCATGGAG+AGG | + | chr8_2:7014107-7014126 | Msa1230940:intron | 50.0% | |
| ATGAGCTTGCAGGAGATGAC+TGG | - | chr8_2:7014175-7014194 | None:intergenic | 50.0% | |
| AACCTTGCAGATGAGCTTGC+AGG | - | chr8_2:7014185-7014204 | None:intergenic | 50.0% | |
| GCCCTTAACATGACCGAACT+TGG | + | chr8_2:7014743-7014762 | Msa1230940:intron | 50.0% | |
| CCTTTCTCAACGCCCAAATC+TGG | - | chr8_2:7015034-7015053 | None:intergenic | 50.0% | |
| !! | CCAGATTTGGGCGTTGAGAA+AGG | + | chr8_2:7015031-7015050 | Msa1230940:intron | 50.0% |
| TGTGGTAAAGTGTGGCTGGC+TGG | + | chr8_2:7012773-7012792 | Msa1230940:intron | 55.0% | |
| TCCGAAATTGCTGGTGGGGT+GGG | + | chr8_2:7012839-7012858 | Msa1230940:intron | 55.0% | |
| AAGGCTGATGCCAAGGAGGT+TGG | + | chr8_2:7013571-7013590 | Msa1230940:intron | 55.0% | |
| CCTAGGCTCCCTAGCTACTT+GGG | - | chr8_2:7013635-7013654 | None:intergenic | 55.0% | |
| ! | CGCATCCTCCTCTCTGCTTT+TGG | - | chr8_2:7013703-7013722 | None:intergenic | 55.0% |
| CTCCTGCAAGCTCATCTGCA+AGG | + | chr8_2:7014180-7014199 | Msa1230940:CDS | 55.0% | |
| GTCCGAAATTGCTGGTGGGG+TGG | + | chr8_2:7012838-7012857 | Msa1230940:intron | 60.0% | |
| CCCCACCCCACCAGCAATTT+CGG | - | chr8_2:7012843-7012862 | None:intergenic | 60.0% | |
| CCGAAATTGCTGGTGGGGTG+GGG | + | chr8_2:7012840-7012859 | Msa1230940:intron | 60.0% | |
| CGAAATTGCTGGTGGGGTGG+GGG | + | chr8_2:7012841-7012860 | Msa1230940:intron | 60.0% | |
| GGACAAGGCTGATGCCAAGG+AGG | + | chr8_2:7013567-7013586 | Msa1230940:intron | 60.0% | |
| CCCAAGTAGCTAGGGAGCCT+AGG | + | chr8_2:7013632-7013651 | Msa1230940:intron | 60.0% | |
| GCCTAGGCTCCCTAGCTACT+TGG | - | chr8_2:7013636-7013655 | None:intergenic | 60.0% | |
| AATTGCTGGTGGGGTGGGGG+TGG | + | chr8_2:7012844-7012863 | Msa1230940:intron | 65.0% | |
| ATTGCTGGTGGGGTGGGGGT+GGG | + | chr8_2:7012845-7012864 | Msa1230940:intron | 65.0% | |
| TTGCTGGTGGGGTGGGGGTG+GGG | + | chr8_2:7012846-7012865 | Msa1230940:intron | 70.0% | |
| TGCTGGTGGGGTGGGGGTGG+GGG | + | chr8_2:7012847-7012866 | Msa1230940:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 7012002 | 7015449 | 7012002 | ID=Msa1230940;Name=Msa1230940 |
| chr8_2 | mRNA | 7012002 | 7015449 | 7012002 | ID=Msa1230940-mRNA-1;Parent=Msa1230940;Name=Msa1230940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=114|1|1|1|0.66|0.75|4|311|98 |
| chr8_2 | exon | 7012002 | 7012108 | 7012002 | ID=Msa1230940-mRNA-1:exon:2631;Parent=Msa1230940-mRNA-1 |
| chr8_2 | exon | 7014109 | 7014201 | 7014109 | ID=Msa1230940-mRNA-1:exon:2632;Parent=Msa1230940-mRNA-1 |
| chr8_2 | exon | 7014302 | 7014408 | 7014302 | ID=Msa1230940-mRNA-1:exon:2633;Parent=Msa1230940-mRNA-1 |
| chr8_2 | exon | 7015035 | 7015449 | 7015035 | ID=Msa1230940-mRNA-1:exon:2634;Parent=Msa1230940-mRNA-1 |
| chr8_2 | five_prime_UTR | 7012002 | 7012108 | 7012002 | ID=Msa1230940-mRNA-1:five_prime_utr;Parent=Msa1230940-mRNA-1 |
| chr8_2 | five_prime_UTR | 7014109 | 7014115 | 7014109 | ID=Msa1230940-mRNA-1:five_prime_utr;Parent=Msa1230940-mRNA-1 |
| chr8_2 | CDS | 7014116 | 7014201 | 7014116 | ID=Msa1230940-mRNA-1:cds;Parent=Msa1230940-mRNA-1 |
| chr8_2 | CDS | 7014302 | 7014408 | 7014302 | ID=Msa1230940-mRNA-1:cds;Parent=Msa1230940-mRNA-1 |
| chr8_2 | CDS | 7015035 | 7015138 | 7015035 | ID=Msa1230940-mRNA-1:cds;Parent=Msa1230940-mRNA-1 |
| chr8_2 | three_prime_UTR | 7015139 | 7015449 | 7015139 | ID=Msa1230940-mRNA-1:three_prime_utr;Parent=Msa1230940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
