Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1231010 | XP_013444156.1 | 97.959 | 98 | 2 | 0 | 5 | 102 | 1 | 98 | 2.22e-63 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1231010 | sp|Q9FIJ2|NDUA2_ARATH | 68.421 | 95 | 30 | 0 | 5 | 99 | 1 | 95 | 9.37e-48 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1231010 | A0A072TMV0 | 97.959 | 98 | 2 | 0 | 5 | 102 | 1 | 98 | 1.06e-63 | 197 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1230940 | Msa1231010 | 0.927264 | 1.496241e-91 | -8.615850e-47 |
| Msa1231010 | Msa1273860 | 0.802444 | 5.594909e-49 | -8.615850e-47 |
| Msa1231010 | Msa1311800 | 0.890579 | 8.675797e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1231010 | MtrunA17_Chr8g0339811 | 97.959 | 98 | 2 | 0 | 5 | 102 | 1 | 98 | 2.05e-67 | 197 |
| Msa1231010 | MtrunA17_Chr2g0294481 | 91.579 | 95 | 8 | 0 | 5 | 99 | 1 | 95 | 1.12e-52 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1231010 | AT5G47890.1 | 68.421 | 95 | 30 | 0 | 5 | 99 | 1 | 95 | 9.52e-49 | 150 |
Find 29 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGATCAATATTGGCAATTT+TGG | -0.001659 | 8_2:+7125915 | None:intergenic |
| ACGGATTAAATCTATTTATT+TGG | 0.121925 | 8_2:-7124956 | Msa1231010:three_prime_UTR |
| TACCATATCTTGCCCATAAT+TGG | 0.178345 | 8_2:+7125871 | None:intergenic |
| GTGGAGTTGAACCCCAATTA+TGG | 0.257922 | 8_2:-7125884 | Msa1231010:CDS |
| ATTTGTTGAAAAGAATTATA+CGG | 0.319148 | 8_2:-7125955 | Msa1231010:CDS |
| ACCATATCTTGCCCATAATT+GGG | 0.333987 | 8_2:+7125872 | None:intergenic |
| CTGCATTCACGGATCAATAT+TGG | 0.349255 | 8_2:+7125906 | None:intergenic |
| AACCTTGCAGATGAGCTTGC+AGG | 0.367566 | 8_2:+7126075 | None:intergenic |
| CCCCAATTATGGGCAAGATA+TGG | 0.376635 | 8_2:-7125873 | Msa1231010:intron |
| AGCTTCAACTTAAACTCAAC+AGG | 0.397065 | 8_2:+7125028 | None:intergenic |
| CAAAGAACATAAAAGAGCTT+CGG | 0.421200 | 8_2:-7126119 | Msa1231010:CDS |
| TGGAGTTGAACCCCAATTAT+GGG | 0.437531 | 8_2:-7125883 | Msa1231010:CDS |
| GTTCAACTCCACTGCATTCA+CGG | 0.460928 | 8_2:+7125895 | None:intergenic |
| CCAGATTTGGGCGTTGAGAA+AGG | 0.467692 | 8_2:-7125229 | Msa1231010:intron |
| CTCGAAGATATGGTAAAAGC+AGG | 0.488900 | 8_2:-7125163 | Msa1231010:CDS |
| TGTTATTACAGTGCGACTCT+TGG | 0.501310 | 8_2:-7125067 | Msa1231010:three_prime_UTR |
| CGTTGAGAAAGGCATCAAAC+TGG | 0.502706 | 8_2:-7125218 | Msa1231010:CDS |
| ATGAGCTTGCAGGAGATGAC+TGG | 0.511150 | 8_2:+7126085 | None:intergenic |
| CCATATCTTGCCCATAATTG+GGG | 0.562541 | 8_2:+7125873 | None:intergenic |
| TCGAAGATATGGTAAAAGCA+GGG | 0.571911 | 8_2:-7125162 | Msa1231010:CDS |
| CTCCTGCAAGCTCATCTGCA+AGG | 0.602497 | 8_2:-7126077 | Msa1231010:intron |
| TGAGATATTGATTCAAAACA+CGG | 0.613809 | 8_2:-7124975 | Msa1231010:three_prime_UTR |
| GATCTAGGAAAGCAATGGCA+TGG | 0.619704 | 8_2:-7126155 | Msa1231010:intron |
| GAGAAAGGCATCAAACTGGA+AGG | 0.620188 | 8_2:-7125214 | Msa1231010:CDS |
| CGAAGATATGGTAAAAGCAG+GGG | 0.650048 | 8_2:-7125161 | Msa1231010:CDS |
| TCAATATCTCACAATAAACA+TGG | 0.658161 | 8_2:+7124987 | None:intergenic |
| TATGTATCGACTAAGCAACC+TGG | 0.659217 | 8_2:-7124883 | Msa1231010:three_prime_UTR |
| ATATTGATCCGTGAATGCAG+TGG | 0.692040 | 8_2:-7125903 | Msa1231010:CDS |
| ACTTTGATCTAGGAAAGCAA+TGG | 0.709760 | 8_2:-7126160 | Msa1231010:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATTTTTATTTATTTA+AGG | + | chr8_2:7124888-7124907 | None:intergenic | 0.0% |
| !!! | ATATTATTTTATTTTTTAAA+AGG | + | chr8_2:7124940-7124959 | None:intergenic | 0.0% |
| !!! | TTTATTTTTTAAAAGGAATA+AGG | + | chr8_2:7124933-7124952 | None:intergenic | 10.0% |
| !! | AAATAATGAAAATTAAGATA+GGG | + | chr8_2:7127386-7127405 | None:intergenic | 10.0% |
| !! | AAAATAATGAAAATTAAGAT+AGG | + | chr8_2:7127387-7127406 | None:intergenic | 10.0% |
| !!! | ATAATCTATTTCTATAACAA+AGG | + | chr8_2:7125322-7125341 | None:intergenic | 15.0% |
| !!! | TTGCTTTTTTTATTACATTT+AGG | - | chr8_2:7125593-7125612 | Msa1231010:intron | 15.0% |
| !! | AAATATTATAACTTTGATCT+AGG | - | chr8_2:7127059-7127078 | Msa1231010:intron | 15.0% |
| !!! | ATTATAATGCTTTGAAATTT+TGG | + | chr8_2:7127205-7127224 | None:intergenic | 15.0% |
| !!! | ATTATTATTTTTGTTATCTC+AGG | - | chr8_2:7127249-7127268 | Msa1231010:intron | 15.0% |
| !!! | TTATTATTTTTGTTATCTCA+GGG | - | chr8_2:7127250-7127269 | Msa1231010:intron | 15.0% |
| !!! | ATTTGTTGAAAAGAATTATA+CGG | - | chr8_2:7127274-7127293 | Msa1231010:intron | 15.0% |
| !! | AATAATGAAAATTAAGATAG+GGG | + | chr8_2:7127385-7127404 | None:intergenic | 15.0% |
| !! | TATTATAATATACACAACTT+AGG | + | chr8_2:7127752-7127771 | None:intergenic | 15.0% |
| !! | TGTATATTATAATATCCATT+CGG | - | chr8_2:7127758-7127777 | Msa1231010:intron | 15.0% |
| !! | GATTACTTCAATGTAAAATA+AGG | + | chr8_2:7124969-7124988 | None:intergenic | 20.0% |
| !! | GAAATAGAAAAACTTGTAAT+TGG | + | chr8_2:7125122-7125141 | None:intergenic | 20.0% |
| !!! | TTATTTGAGACTGTTTTTAT+AGG | - | chr8_2:7125216-7125235 | Msa1231010:CDS | 20.0% |
| !! | AAAATAATAGCCAAACTTAT+GGG | + | chr8_2:7125875-7125894 | None:intergenic | 20.0% |
| !!! | CTATTCAAAATTGATTTGAA+TGG | + | chr8_2:7126520-7126539 | None:intergenic | 20.0% |
| !!! | CATTCAAATCAATTTTGAAT+AGG | - | chr8_2:7126518-7126537 | Msa1231010:intron | 20.0% |
| !! | TAATGAAGAAAACAGTAAAA+GGG | + | chr8_2:7126826-7126845 | None:intergenic | 20.0% |
| !! | ATAATGAAGAAAACAGTAAA+AGG | + | chr8_2:7126827-7126846 | None:intergenic | 20.0% |
| !!! | GATATATTTTTTCCTTTCTT+TGG | - | chr8_2:7127178-7127197 | Msa1231010:intron | 20.0% |
| !!! | TTTCAATATTATCCCAATTT+TGG | - | chr8_2:7127600-7127619 | Msa1231010:intron | 20.0% |
| !!! | TTTTTTTCTTAATCCAAGTT+CGG | + | chr8_2:7127728-7127747 | None:intergenic | 20.0% |
| !!! | ACGGATTAAATCTATTTATT+TGG | - | chr8_2:7128273-7128292 | Msa1231010:intron | 20.0% |
| !!! | CTTATTTTCATAAGTTCTTC+AGG | - | chr8_2:7125241-7125260 | Msa1231010:intron | 25.0% |
| ! | TTATACTCAATGTCATTCAT+GGG | + | chr8_2:7125387-7125406 | None:intergenic | 25.0% |
| ! | ATTATACTCAATGTCATTCA+TGG | + | chr8_2:7125388-7125407 | None:intergenic | 25.0% |
| ! | TGAATGACATTGAGTATAAT+TGG | - | chr8_2:7125388-7125407 | Msa1231010:intron | 25.0% |
| ! | GAATGACATTGAGTATAATT+GGG | - | chr8_2:7125389-7125408 | Msa1231010:intron | 25.0% |
| ! | ATAAGTGTTAGTAAGTTTCT+TGG | - | chr8_2:7125491-7125510 | Msa1231010:intron | 25.0% |
| ! | TTCTTGGTATAATAGAGTAT+TGG | - | chr8_2:7125507-7125526 | Msa1231010:intron | 25.0% |
| !! | TCTTGGTATAATAGAGTATT+GGG | - | chr8_2:7125508-7125527 | Msa1231010:intron | 25.0% |
| ! | TCAAGTCTATTGTTAGTTAT+AGG | - | chr8_2:7125677-7125696 | Msa1231010:intron | 25.0% |
| ! | CAAGTCTATTGTTAGTTATA+GGG | - | chr8_2:7125678-7125697 | Msa1231010:intron | 25.0% |
| ! | GAAAATAATAGCCAAACTTA+TGG | + | chr8_2:7125876-7125895 | None:intergenic | 25.0% |
| ! | TTAGTCATGGAAAAAAATCT+GGG | + | chr8_2:7126070-7126089 | None:intergenic | 25.0% |
| ! | TTTAGTCATGGAAAAAAATC+TGG | + | chr8_2:7126071-7126090 | None:intergenic | 25.0% |
| !!! | TTTTTTCCATGACTAAAAAG+TGG | - | chr8_2:7126074-7126093 | Msa1231010:intron | 25.0% |
| ! | TTAACTGAGAAATAGAAAAC+TGG | + | chr8_2:7126299-7126318 | None:intergenic | 25.0% |
| !! | TAAGATTTTATCAATGCTAG+TGG | + | chr8_2:7126403-7126422 | None:intergenic | 25.0% |
| ! | GTGTAAAATTATTAAGCTCA+TGG | - | chr8_2:7126471-7126490 | Msa1231010:intron | 25.0% |
| !! | AATCAATTTTGAATAGGACA+AGG | - | chr8_2:7126524-7126543 | Msa1231010:intron | 25.0% |
| ! | AATTTCCTGTTATGAAACTA+GGG | + | chr8_2:7127453-7127472 | None:intergenic | 25.0% |
| ! | AAATTTCCTGTTATGAAACT+AGG | + | chr8_2:7127454-7127473 | None:intergenic | 25.0% |
| !! | GTTTCATAACAGGAAATTTT+AGG | - | chr8_2:7127455-7127474 | Msa1231010:intron | 25.0% |
| ! | ACGTAGTTATGAGAATATAA+TGG | - | chr8_2:7127553-7127572 | Msa1231010:intron | 25.0% |
| !! | GATTGTTACTTCTGATTAAT+TGG | - | chr8_2:7127785-7127804 | Msa1231010:intron | 25.0% |
| ! | TACTGAAATTGGCATTATAA+GGG | + | chr8_2:7127850-7127869 | None:intergenic | 25.0% |
| ! | ATACTGAAATTGGCATTATA+AGG | + | chr8_2:7127851-7127870 | None:intergenic | 25.0% |
| !!! | TCATTCTCATTATTTTGTAC+TGG | - | chr8_2:7127937-7127956 | Msa1231010:intron | 25.0% |
| !! | CTTTTATTCACTGTATGAAA+GGG | - | chr8_2:7128116-7128135 | Msa1231010:intron | 25.0% |
| !! | GAAAGGGAATAAATGTTTTT+AGG | - | chr8_2:7128132-7128151 | Msa1231010:intron | 25.0% |
| ! | TCAATATCTCACAATAAACA+TGG | + | chr8_2:7128245-7128264 | None:intergenic | 25.0% |
| !!! | TGAGATATTGATTCAAAACA+CGG | - | chr8_2:7128254-7128273 | Msa1231010:intron | 25.0% |
| ! | CTTAAAAAGAATATTCTACC+AGG | + | chr8_2:7128367-7128386 | None:intergenic | 25.0% |
| ATTGTTAGTTATAGGGAGTA+TGG | - | chr8_2:7125685-7125704 | Msa1231010:intron | 30.0% | |
| GTTTATATTGTGGTAAACTG+TGG | - | chr8_2:7125739-7125758 | Msa1231010:intron | 30.0% | |
| ! | TATATTTCGTCTGAAATTGC+TGG | - | chr8_2:7125804-7125823 | Msa1231010:intron | 30.0% |
| AACTTATGGGCAAAAAATTG+TGG | + | chr8_2:7125862-7125881 | None:intergenic | 30.0% | |
| !!! | CAATTTTTTGCCCATAAGTT+TGG | - | chr8_2:7125862-7125881 | Msa1231010:intron | 30.0% |
| ! | GCTATTATTTTCATTCTGAC+AGG | - | chr8_2:7125884-7125903 | Msa1231010:CDS | 30.0% |
| TTAATTGGAAATCGGAAACT+TGG | - | chr8_2:7125920-7125939 | Msa1231010:CDS | 30.0% | |
| TAATTGGAAATCGGAAACTT+GGG | - | chr8_2:7125921-7125940 | Msa1231010:CDS | 30.0% | |
| TGGCTATATACAATCTCAAA+GGG | + | chr8_2:7126042-7126061 | None:intergenic | 30.0% | |
| TAGTCATGGAAAAAAATCTG+GGG | + | chr8_2:7126069-7126088 | None:intergenic | 30.0% | |
| !!! | AAACTTCCACTTTTTAGTCA+TGG | + | chr8_2:7126083-7126102 | None:intergenic | 30.0% |
| TCTTGTAAACAACTACATGA+GGG | + | chr8_2:7126226-7126245 | None:intergenic | 30.0% | |
| ATCTTGTAAACAACTACATG+AGG | + | chr8_2:7126227-7126246 | None:intergenic | 30.0% | |
| AGTTGTTTACAAGATTGACA+AGG | - | chr8_2:7126232-7126251 | Msa1231010:intron | 30.0% | |
| CAGTTAAGAAAAAGTAGTAG+AGG | - | chr8_2:7126312-7126331 | Msa1231010:intron | 30.0% | |
| TATAACAATTACCAAGATGC+AGG | + | chr8_2:7126361-7126380 | None:intergenic | 30.0% | |
| ! | TTGATTTGAATGGTAGAAGT+TGG | + | chr8_2:7126510-7126529 | None:intergenic | 30.0% |
| TATCTGTCCATTAGATATGT+AGG | - | chr8_2:7126709-7126728 | Msa1231010:intron | 30.0% | |
| ACTCTTACCTACATATCTAA+TGG | + | chr8_2:7126719-7126738 | None:intergenic | 30.0% | |
| ! | AGATATGTAGGTAAGAGTAT+TGG | - | chr8_2:7126721-7126740 | Msa1231010:intron | 30.0% |
| !! | GATATGTAGGTAAGAGTATT+GGG | - | chr8_2:7126722-7126741 | Msa1231010:intron | 30.0% |
| ATAATATGATTGTCTGTGAG+AGG | - | chr8_2:7126884-7126903 | Msa1231010:intron | 30.0% | |
| !! | GTATCTAGTATTGATTTGAC+TGG | + | chr8_2:7126959-7126978 | None:intergenic | 30.0% |
| AAATCAATACTAGATACCAG+TGG | - | chr8_2:7126962-7126981 | Msa1231010:intron | 30.0% | |
| CAAAGAACATAAAAGAGCTT+CGG | - | chr8_2:7127110-7127129 | Msa1231010:intron | 30.0% | |
| !! | TGAAATTTTGGTCCAAAGAA+AGG | + | chr8_2:7127193-7127212 | None:intergenic | 30.0% |
| ! | GGATCAATATTGGCAATTTT+GGG | + | chr8_2:7127316-7127335 | None:intergenic | 30.0% |
| GAACATGTGAATGCAAATTA+TGG | + | chr8_2:7127428-7127447 | None:intergenic | 30.0% | |
| ATTTCCTGTTATGAAACTAG+GGG | + | chr8_2:7127452-7127471 | None:intergenic | 30.0% | |
| ! | TGTGGATTAAAGCCAAAATT+GGG | + | chr8_2:7127615-7127634 | None:intergenic | 30.0% |
| ! | TTGTGGATTAAAGCCAAAAT+TGG | + | chr8_2:7127616-7127635 | None:intergenic | 30.0% |
| GATTCGAGATATTGTTTGAA+GGG | + | chr8_2:7127676-7127695 | None:intergenic | 30.0% | |
| AGATTCGAGATATTGTTTGA+AGG | + | chr8_2:7127677-7127696 | None:intergenic | 30.0% | |
| TTCAAACAATATCTCGAATC+TGG | - | chr8_2:7127676-7127695 | Msa1231010:intron | 30.0% | |
| !! | ATTAATTGGCTTGTAGTCAA+TGG | - | chr8_2:7127799-7127818 | Msa1231010:intron | 30.0% |
| ! | TAGTTTTCTAATCGCATTGT+AGG | + | chr8_2:7127825-7127844 | None:intergenic | 30.0% |
| CAGAGTAAGTATACTGAAAT+TGG | + | chr8_2:7127861-7127880 | None:intergenic | 30.0% | |
| GCTACAAGATATAATCAGAA+AGG | + | chr8_2:7127908-7127927 | None:intergenic | 30.0% | |
| TCCTTCTTTAATACCAGATT+TGG | - | chr8_2:7127987-7128006 | Msa1231010:intron | 30.0% | |
| CCTTCTTTAATACCAGATTT+GGG | - | chr8_2:7127988-7128007 | Msa1231010:intron | 30.0% | |
| ! | GACAGAACCACAAATTTTTA+AGG | - | chr8_2:7128041-7128060 | Msa1231010:intron | 30.0% |
| TCGAGTACCTTAAAAATTTG+TGG | + | chr8_2:7128051-7128070 | None:intergenic | 30.0% | |
| !!! | TTTTAAGGTACTCGAAGATA+TGG | - | chr8_2:7128056-7128075 | Msa1231010:intron | 30.0% |
| ! | GCTTTTATTCACTGTATGAA+AGG | - | chr8_2:7128115-7128134 | Msa1231010:intron | 30.0% |
| TAATCAAATCAATCCCCAGA+GGG | - | chr8_2:7124984-7125003 | Msa1231010:three_prime_UTR | 35.0% | |
| TGAACTCTTCTTCTGATCTT+CGG | - | chr8_2:7125048-7125067 | Msa1231010:three_prime_UTR | 35.0% | |
| AATTTCTGACTCACTGTTTG+TGG | + | chr8_2:7125077-7125096 | None:intergenic | 35.0% | |
| TCATAAGCGCTTATCATGAT+AGG | + | chr8_2:7125354-7125373 | None:intergenic | 35.0% | |
| ACTACTAAGCACATAGTTGA+TGG | - | chr8_2:7125625-7125644 | Msa1231010:intron | 35.0% | |
| ! | TTGATGGCTTGGATATCAAA+TGG | - | chr8_2:7125641-7125660 | Msa1231010:intron | 35.0% |
| !!! | GGGAGTATGGTTCTAAATTT+TGG | - | chr8_2:7125698-7125717 | Msa1231010:intron | 35.0% |
| TATGGGCAAAAAATTGTGGA+GGG | + | chr8_2:7125858-7125877 | None:intergenic | 35.0% | |
| TTATGGGCAAAAAATTGTGG+AGG | + | chr8_2:7125859-7125878 | None:intergenic | 35.0% | |
| AATTGGAAATCGGAAACTTG+GGG | - | chr8_2:7125922-7125941 | Msa1231010:CDS | 35.0% | |
| AACCAACTACATGGTCAAAT+TGG | - | chr8_2:7125959-7125978 | Msa1231010:CDS | 35.0% | |
| CTGGCTATATACAATCTCAA+AGG | + | chr8_2:7126043-7126062 | None:intergenic | 35.0% | |
| CAGCTCATGATAAATTCTCT+TGG | + | chr8_2:7126186-7126205 | None:intergenic | 35.0% | |
| CAAGAGAATTTATCATGAGC+TGG | - | chr8_2:7126184-7126203 | Msa1231010:intron | 35.0% | |
| CTGAGAAATAGAAAACTGGA+TGG | + | chr8_2:7126295-7126314 | None:intergenic | 35.0% | |
| ! | AGTAGTAGAGGTACATAAAG+TGG | - | chr8_2:7126324-7126343 | Msa1231010:intron | 35.0% |
| TAGTGGTTCAATGATATTGG+GGG | + | chr8_2:7126386-7126405 | None:intergenic | 35.0% | |
| CTAGTGGTTCAATGATATTG+GGG | + | chr8_2:7126387-7126406 | None:intergenic | 35.0% | |
| GCTAGTGGTTCAATGATATT+GGG | + | chr8_2:7126388-7126407 | None:intergenic | 35.0% | |
| TGCTAGTGGTTCAATGATAT+TGG | + | chr8_2:7126389-7126408 | None:intergenic | 35.0% | |
| TATCAAGCAGAAGCAAAAAC+TGG | - | chr8_2:7126426-7126445 | Msa1231010:intron | 35.0% | |
| TGCATATACCTCCCAAAATT+AGG | + | chr8_2:7126630-7126649 | None:intergenic | 35.0% | |
| !! | CTGTTAACTTGTTACAACAG+AGG | - | chr8_2:7126753-7126772 | Msa1231010:intron | 35.0% |
| ACTTTGATCTAGGAAAGCAA+TGG | - | chr8_2:7127069-7127088 | Msa1231010:intron | 35.0% | |
| ! | CGGATCAATATTGGCAATTT+TGG | + | chr8_2:7127317-7127336 | None:intergenic | 35.0% |
| ACCATATCTTGCCCATAATT+GGG | + | chr8_2:7127360-7127379 | None:intergenic | 35.0% | |
| TACCATATCTTGCCCATAAT+TGG | + | chr8_2:7127361-7127380 | None:intergenic | 35.0% | |
| TTTCCTGTTATGAAACTAGG+GGG | + | chr8_2:7127451-7127470 | None:intergenic | 35.0% | |
| ! | TCATAACTACGTCTCTAGAA+TGG | + | chr8_2:7127545-7127564 | None:intergenic | 35.0% |
| CTCAGAACAACAAATGTTTG+TGG | + | chr8_2:7127633-7127652 | None:intergenic | 35.0% | |
| AAGTAACAATCACAACCGAA+TGG | + | chr8_2:7127776-7127795 | None:intergenic | 35.0% | |
| CCCAAATCTGGTATTAAAGA+AGG | + | chr8_2:7127991-7128010 | None:intergenic | 35.0% | |
| TCGAAGATATGGTAAAAGCA+GGG | - | chr8_2:7128067-7128086 | Msa1231010:intron | 35.0% | |
| AGCTTCAACTTAAACTCAAC+AGG | + | chr8_2:7128204-7128223 | None:intergenic | 35.0% | |
| GTAATCAAATCAATCCCCAG+AGG | - | chr8_2:7124983-7125002 | Msa1231010:three_prime_UTR | 40.0% | |
| AAGATAGATCGATACCCTCT+GGG | + | chr8_2:7125001-7125020 | None:intergenic | 40.0% | |
| AAAGATAGATCGATACCCTC+TGG | + | chr8_2:7125002-7125021 | None:intergenic | 40.0% | |
| !! | TAAGCACATAGTTGATGGCT+TGG | - | chr8_2:7125630-7125649 | Msa1231010:intron | 40.0% |
| ATATTGTGGTAAACTGTGGC+TGG | - | chr8_2:7125743-7125762 | Msa1231010:intron | 40.0% | |
| ! | ATTTCGTCTGAAATTGCTGG+TGG | - | chr8_2:7125807-7125826 | Msa1231010:intron | 40.0% |
| ! | TTTCGTCTGAAATTGCTGGT+GGG | - | chr8_2:7125808-7125827 | Msa1231010:intron | 40.0% |
| TTTCATTCTGACAGGCATAG+TGG | - | chr8_2:7125892-7125911 | Msa1231010:CDS | 40.0% | |
| TTCATTCTGACAGGCATAGT+GGG | - | chr8_2:7125893-7125912 | Msa1231010:CDS | 40.0% | |
| ! | TGGGGTGCTTAATTGGAAAT+CGG | - | chr8_2:7125912-7125931 | Msa1231010:CDS | 40.0% |
| AGCCAATTTGACCATGTAGT+TGG | + | chr8_2:7125964-7125983 | None:intergenic | 40.0% | |
| TTTAGATGCAGCAACATGGT+AGG | + | chr8_2:7126016-7126035 | None:intergenic | 40.0% | |
| GAGATTTAGATGCAGCAACA+TGG | + | chr8_2:7126020-7126039 | None:intergenic | 40.0% | |
| ! | GGAAAAAAATCTGGGGTTTC+TGG | + | chr8_2:7126062-7126081 | None:intergenic | 40.0% |
| AACTATTGCGACTGAACTGA+AGG | - | chr8_2:7126110-7126129 | Msa1231010:CDS | 40.0% | |
| ! | GCTATTGACTGTTGTCTATG+TGG | + | chr8_2:7126164-7126183 | None:intergenic | 40.0% |
| ! | AGTAGAGGTACATAAAGTGG+AGG | - | chr8_2:7126327-7126346 | Msa1231010:intron | 40.0% |
| TATGTTAACCGCCCACTAAA+GGG | - | chr8_2:7126567-7126586 | Msa1231010:intron | 40.0% | |
| TTGACATTTGGCCCTTTAGT+GGG | + | chr8_2:7126581-7126600 | None:intergenic | 40.0% | |
| !! | TTTTGGGAGGTATATGCAAG+AGG | - | chr8_2:7126632-7126651 | Msa1231010:intron | 40.0% |
| ! | TTTTTCCAAAAGCAGAGAGG+AGG | - | chr8_2:7126667-7126686 | Msa1231010:intron | 40.0% |
| !! | TGTAGGTAAGAGTATTGGGA+TGG | - | chr8_2:7126726-7126745 | Msa1231010:intron | 40.0% |
| !! | GTAGGTAAGAGTATTGGGAT+GGG | - | chr8_2:7126727-7126746 | Msa1231010:intron | 40.0% |
| AGTGCTTCTATGTGAAGCAT+AGG | - | chr8_2:7126776-7126795 | Msa1231010:intron | 40.0% | |
| GTGCTTCTATGTGAAGCATA+GGG | - | chr8_2:7126777-7126796 | Msa1231010:intron | 40.0% | |
| TGCTTCTATGTGAAGCATAG+GGG | - | chr8_2:7126778-7126797 | Msa1231010:intron | 40.0% | |
| !!! | CATAGGGGGCATGAATTTTT+TGG | - | chr8_2:7126793-7126812 | Msa1231010:intron | 40.0% |
| ATTGTCTGTGAGAGGATGTA+AGG | - | chr8_2:7126892-7126911 | Msa1231010:intron | 40.0% | |
| TTGTCTGTGAGAGGATGTAA+GGG | - | chr8_2:7126893-7126912 | Msa1231010:intron | 40.0% | |
| CTGCATTCACGGATCAATAT+TGG | + | chr8_2:7127326-7127345 | None:intergenic | 40.0% | |
| ATATTGATCCGTGAATGCAG+TGG | - | chr8_2:7127326-7127345 | Msa1231010:intron | 40.0% | |
| TGGAGTTGAACCCCAATTAT+GGG | - | chr8_2:7127346-7127365 | Msa1231010:intron | 40.0% | |
| CCATATCTTGCCCATAATTG+GGG | + | chr8_2:7127359-7127378 | None:intergenic | 40.0% | |
| TTCCTGTTATGAAACTAGGG+GGG | + | chr8_2:7127450-7127469 | None:intergenic | 40.0% | |
| !! | TCCAAGTTCGGTCTTGTTAA+GGG | + | chr8_2:7127716-7127735 | None:intergenic | 40.0% |
| !! | ATCCAAGTTCGGTCTTGTTA+AGG | + | chr8_2:7127717-7127736 | None:intergenic | 40.0% |
| CTGCAAAGTCATTGTATCTC+TGG | - | chr8_2:7127878-7127897 | Msa1231010:intron | 40.0% | |
| CTCGAAGATATGGTAAAAGC+AGG | - | chr8_2:7128066-7128085 | Msa1231010:intron | 40.0% | |
| CGAAGATATGGTAAAAGCAG+GGG | - | chr8_2:7128068-7128087 | Msa1231010:intron | 40.0% | |
| TGTTATTACAGTGCGACTCT+TGG | - | chr8_2:7128162-7128181 | Msa1231010:intron | 40.0% | |
| !! | TATGTATCGACTAAGCAACC+TGG | - | chr8_2:7128346-7128365 | Msa1231010:intron | 40.0% |
| AGATAGATCGATACCCTCTG+GGG | + | chr8_2:7125000-7125019 | None:intergenic | 45.0% | |
| TGGGTCTTTGCTTGAGTAGT+TGG | - | chr8_2:7125408-7125427 | Msa1231010:intron | 45.0% | |
| !!! | ATTTTGGTTGCAGCATGCTG+CGG | - | chr8_2:7125714-7125733 | Msa1231010:intron | 45.0% |
| TGCTGCGGCAGTTTATATTG+TGG | - | chr8_2:7125729-7125748 | Msa1231010:intron | 45.0% | |
| ! | TTCGTCTGAAATTGCTGGTG+GGG | - | chr8_2:7125809-7125828 | Msa1231010:intron | 45.0% |
| GCAAAAAATTGTGGAGGGAG+GGG | + | chr8_2:7125853-7125872 | None:intergenic | 45.0% | |
| GGCAAAAAATTGTGGAGGGA+GGG | + | chr8_2:7125854-7125873 | None:intergenic | 45.0% | |
| TCATTCTGACAGGCATAGTG+GGG | - | chr8_2:7125894-7125913 | Msa1231010:CDS | 45.0% | |
| CCATGTAGTTGGTTGAACAG+AGG | + | chr8_2:7125953-7125972 | None:intergenic | 45.0% | |
| CCTCTGTTCAACCAACTACA+TGG | - | chr8_2:7125950-7125969 | Msa1231010:CDS | 45.0% | |
| ! | AGCTGTTGCTTCCAAAGTCT+AGG | - | chr8_2:7126264-7126283 | Msa1231010:intron | 45.0% |
| GGATGGATCAACCTAGACTT+TGG | + | chr8_2:7126278-7126297 | None:intergenic | 45.0% | |
| AGCAAAAACTGGTCAAGTCG+TGG | - | chr8_2:7126437-7126456 | Msa1231010:intron | 45.0% | |
| TCAAGTCGTGGCTACTTCAT+TGG | - | chr8_2:7126449-7126468 | Msa1231010:intron | 45.0% | |
| GTTAACATAGCCAACCTCCT+TGG | + | chr8_2:7126556-7126575 | None:intergenic | 45.0% | |
| CTATGTTAACCGCCCACTAA+AGG | - | chr8_2:7126566-7126585 | Msa1231010:intron | 45.0% | |
| GTTGACATTTGGCCCTTTAG+TGG | + | chr8_2:7126582-7126601 | None:intergenic | 45.0% | |
| CTACTTGGGCAGTTGACATT+TGG | + | chr8_2:7126593-7126612 | None:intergenic | 45.0% | |
| TACCTCCCAAAATTAGGCCT+AGG | + | chr8_2:7126624-7126643 | None:intergenic | 45.0% | |
| !! | TATATGCAAGAGGTGTCCTG+AGG | - | chr8_2:7126642-7126661 | Msa1231010:intron | 45.0% |
| !! | ATATGCAAGAGGTGTCCTGA+GGG | - | chr8_2:7126643-7126662 | Msa1231010:intron | 45.0% |
| !! | TGCTTTTGGAAAAACCCCTC+AGG | + | chr8_2:7126661-7126680 | None:intergenic | 45.0% |
| ! | GGGTTTTTCCAAAAGCAGAG+AGG | - | chr8_2:7126664-7126683 | Msa1231010:intron | 45.0% |
| GCTTCTATGTGAAGCATAGG+GGG | - | chr8_2:7126779-7126798 | Msa1231010:intron | 45.0% | |
| !!! | AGGGGGCATGAATTTTTTGG+AGG | - | chr8_2:7126796-7126815 | Msa1231010:intron | 45.0% |
| !!! | GGGGGCATGAATTTTTTGGA+GGG | - | chr8_2:7126797-7126816 | Msa1231010:intron | 45.0% |
| !! | GCTCTTTAGCTTGCATCGTT+AGG | - | chr8_2:7126984-7127003 | Msa1231010:intron | 45.0% |
| ATGCCTTGTGATGACTGTTG+AGG | - | chr8_2:7127025-7127044 | Msa1231010:intron | 45.0% | |
| TCACCTCAACAGTCATCACA+AGG | + | chr8_2:7127031-7127050 | None:intergenic | 45.0% | |
| GATCTAGGAAAGCAATGGCA+TGG | - | chr8_2:7127074-7127093 | Msa1231010:intron | 45.0% | |
| GTTCAACTCCACTGCATTCA+CGG | + | chr8_2:7127337-7127356 | None:intergenic | 45.0% | |
| GTGGAGTTGAACCCCAATTA+TGG | - | chr8_2:7127345-7127364 | Msa1231010:intron | 45.0% | |
| CCCCAATTATGGGCAAGATA+TGG | - | chr8_2:7127356-7127375 | Msa1231010:intron | 45.0% | |
| TTCCCCCCTAGTTTCATAAC+AGG | - | chr8_2:7127445-7127464 | Msa1231010:intron | 45.0% | |
| !! | CGTTGAGAAAGGCATCAAAC+TGG | - | chr8_2:7128011-7128030 | Msa1231010:intron | 45.0% |
| !! | GAGAAAGGCATCAAACTGGA+AGG | - | chr8_2:7128015-7128034 | Msa1231010:intron | 45.0% |
| ! | TCTGAAATTGCTGGTGGGGT+GGG | - | chr8_2:7125813-7125832 | Msa1231010:intron | 50.0% |
| GGGCAAAAAATTGTGGAGGG+AGG | + | chr8_2:7125855-7125874 | None:intergenic | 50.0% | |
| ! | GGCATAGTGGGGTGCTTAAT+TGG | - | chr8_2:7125905-7125924 | Msa1231010:CDS | 50.0% |
| AGGCACATTTGCCTGCATCT+TGG | - | chr8_2:7126347-7126366 | Msa1231010:intron | 50.0% | |
| ATAGGACAAGGCTGATGCCA+AGG | - | chr8_2:7126536-7126555 | Msa1231010:intron | 50.0% | |
| ACATTTGGCCCTTTAGTGGG+CGG | + | chr8_2:7126578-7126597 | None:intergenic | 50.0% | |
| TGTCAACTGCCCAAGTAGCT+AGG | - | chr8_2:7126595-7126614 | Msa1231010:intron | 50.0% | |
| GTCAACTGCCCAAGTAGCTA+GGG | - | chr8_2:7126596-7126615 | Msa1231010:intron | 50.0% | |
| ! | AGGGAGCCTAGGCCTAATTT+TGG | - | chr8_2:7126615-7126634 | Msa1231010:intron | 50.0% |
| ! | GGGAGCCTAGGCCTAATTTT+GGG | - | chr8_2:7126616-7126635 | Msa1231010:intron | 50.0% |
| ! | AGCCTAGGCCTAATTTTGGG+AGG | - | chr8_2:7126619-7126638 | Msa1231010:intron | 50.0% |
| !! | TATGCAAGAGGTGTCCTGAG+GGG | - | chr8_2:7126644-7126663 | Msa1231010:intron | 50.0% |
| AGAGGAGGATGCGAGAGATA+AGG | - | chr8_2:7126682-7126701 | Msa1231010:intron | 50.0% | |
| GATGCAAGCTAAAGAGCCAC+TGG | + | chr8_2:7126981-7127000 | None:intergenic | 50.0% | |
| ATGAGCTTGCAGGAGATGAC+TGG | + | chr8_2:7127147-7127166 | None:intergenic | 50.0% | |
| AACCTTGCAGATGAGCTTGC+AGG | + | chr8_2:7127157-7127176 | None:intergenic | 50.0% | |
| GCCCTTAACAAGACCGAACT+TGG | - | chr8_2:7127712-7127731 | Msa1231010:intron | 50.0% | |
| CCTTTCTCAACGCCCAAATC+TGG | + | chr8_2:7128003-7128022 | None:intergenic | 50.0% | |
| !! | CCAGATTTGGGCGTTGAGAA+AGG | - | chr8_2:7128000-7128019 | Msa1231010:intron | 50.0% |
| TGTGGTAAACTGTGGCTGGC+TGG | - | chr8_2:7125747-7125766 | Msa1231010:intron | 55.0% | |
| ! | GTCTGAAATTGCTGGTGGGG+TGG | - | chr8_2:7125812-7125831 | Msa1231010:intron | 55.0% |
| CTGAAATTGCTGGTGGGGTG+GGG | - | chr8_2:7125814-7125833 | Msa1231010:intron | 55.0% | |
| TGAAATTGCTGGTGGGGTGG+GGG | - | chr8_2:7125815-7125834 | Msa1231010:intron | 55.0% | |
| AAGGCTGATGCCAAGGAGGT+TGG | - | chr8_2:7126543-7126562 | Msa1231010:intron | 55.0% | |
| CCTAGGCTCCCTAGCTACTT+GGG | + | chr8_2:7126607-7126626 | None:intergenic | 55.0% | |
| ! | CGCATCCTCCTCTCTGCTTT+TGG | + | chr8_2:7126675-7126694 | None:intergenic | 55.0% |
| CTCCTGCAAGCTCATCTGCA+AGG | - | chr8_2:7127152-7127171 | Msa1231010:intron | 55.0% | |
| GGACAAGGCTGATGCCAAGG+AGG | - | chr8_2:7126539-7126558 | Msa1231010:intron | 60.0% | |
| CCCAAGTAGCTAGGGAGCCT+AGG | - | chr8_2:7126604-7126623 | Msa1231010:intron | 60.0% | |
| GCCTAGGCTCCCTAGCTACT+TGG | + | chr8_2:7126608-7126627 | None:intergenic | 60.0% | |
| AATTGCTGGTGGGGTGGGGG+TGG | - | chr8_2:7125818-7125837 | Msa1231010:intron | 65.0% | |
| ATTGCTGGTGGGGTGGGGGT+GGG | - | chr8_2:7125819-7125838 | Msa1231010:intron | 65.0% | |
| TTGCTGGTGGGGTGGGGGTG+GGG | - | chr8_2:7125820-7125839 | Msa1231010:intron | 70.0% | |
| TGCTGGTGGGGTGGGGGTGG+GGG | - | chr8_2:7125821-7125840 | Msa1231010:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 7124833 | 7128418 | 7124833 | ID=Msa1231010;Name=Msa1231010 |
| chr8_2 | mRNA | 7124833 | 7128418 | 7124833 | ID=Msa1231010-mRNA-1;Parent=Msa1231010;Name=Msa1231010-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.66|0.75|0.75|0.66|0.75|4|311|102 |
| chr8_2 | exon | 7124833 | 7125247 | 7124833 | ID=Msa1231010-mRNA-1:exon:2674;Parent=Msa1231010-mRNA-1 |
| chr8_2 | exon | 7125874 | 7125980 | 7125874 | ID=Msa1231010-mRNA-1:exon:2673;Parent=Msa1231010-mRNA-1 |
| chr8_2 | exon | 7126078 | 7126170 | 7126078 | ID=Msa1231010-mRNA-1:exon:2672;Parent=Msa1231010-mRNA-1 |
| chr8_2 | exon | 7128414 | 7128418 | 7128414 | ID=Msa1231010-mRNA-1:exon:2671;Parent=Msa1231010-mRNA-1 |
| chr8_2 | CDS | 7128414 | 7128418 | 7128414 | ID=Msa1231010-mRNA-1:cds;Parent=Msa1231010-mRNA-1 |
| chr8_2 | CDS | 7126078 | 7126170 | 7126078 | ID=Msa1231010-mRNA-1:cds;Parent=Msa1231010-mRNA-1 |
| chr8_2 | CDS | 7125874 | 7125980 | 7125874 | ID=Msa1231010-mRNA-1:cds;Parent=Msa1231010-mRNA-1 |
| chr8_2 | CDS | 7125144 | 7125247 | 7125144 | ID=Msa1231010-mRNA-1:cds;Parent=Msa1231010-mRNA-1 |
| chr8_2 | three_prime_UTR | 7124833 | 7125143 | 7124833 | ID=Msa1231010-mRNA-1:three_prime_utr;Parent=Msa1231010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
