AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1277230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1277230 MtrunA17_Chr8g0345331 95.122 246 6 2 1 245 1 241 1.51e-175 482
Msa1277230 MtrunA17_Chr4g0068301 32.967 182 116 2 6 187 11 186 3.15e-33 122
Msa1277230 MtrunA17_Chr8g0369311 34.211 114 66 3 8 117 60 168 9.10e-16 73.6
Msa1277230 MtrunA17_Chr1g0154011 34.211 114 66 3 8 117 4 112 5.15e-15 70.1
Msa1277230 MtrunA17_Chr3g0108261 32.456 114 68 3 8 117 4 112 7.31e-15 69.7
Msa1277230 MtrunA17_Chr5g0432831 32.456 114 68 3 8 117 4 112 7.94e-15 69.7
Msa1277230 MtrunA17_Chr7g0275361 32.456 114 68 3 8 117 4 112 1.21e-14 69.3
Msa1277230 MtrunA17_Chr4g0037011 31.579 114 69 3 8 117 4 112 1.72e-14 68.6
Msa1277230 MtrunA17_Chr8g0362321 31.250 112 68 3 8 115 7 113 5.22e-14 67.4
Msa1277230 MtrunA17_Chr4g0060351 31.250 112 68 3 8 115 7 113 8.62e-14 67.0
Msa1277230 MtrunA17_Chr8g0378601 29.661 118 66 3 8 117 25 133 1.44e-12 63.9
Msa1277230 MtrunA17_Chr3g0139901 30.579 121 70 5 4 116 2 116 2.41e-11 60.5
Msa1277230 MtrunA17_Chr5g0396451 33.621 116 68 3 4 115 31 141 3.24e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1277230 AT1G17280.9 75.510 245 52 3 1 245 1 237 2.64e-136 383
Msa1277230 AT1G17280.7 75.510 245 52 3 1 245 1 237 2.64e-136 383
Msa1277230 AT1G17280.6 75.510 245 52 3 1 245 1 237 2.64e-136 383
Msa1277230 AT1G17280.2 75.510 245 52 3 1 245 1 237 2.64e-136 383
Msa1277230 AT1G17280.5 75.510 245 52 3 1 245 1 237 2.64e-136 383
Msa1277230 AT1G17280.3 75.510 245 52 3 1 245 1 237 2.64e-136 383
Msa1277230 AT1G17280.1 75.510 245 52 3 1 245 1 237 2.64e-136 383
Msa1277230 AT1G17280.8 75.510 245 52 3 1 245 1 237 2.64e-136 383
Msa1277230 AT5G50430.1 72.691 249 58 3 1 245 1 243 6.01e-134 377
Msa1277230 AT5G50430.2 72.691 249 58 3 1 245 1 243 6.01e-134 377
Msa1277230 AT1G17280.4 73.705 251 52 4 1 245 1 243 1.16e-133 377
Msa1277230 AT5G50430.3 67.470 249 58 4 1 245 1 230 5.29e-119 339
Msa1277230 AT3G17000.1 40.426 141 76 2 6 144 12 146 5.48e-33 122
Msa1277230 AT5G56150.1 34.211 114 66 3 8 117 4 112 5.00e-16 73.2
Msa1277230 AT3G08690.2 34.211 114 66 3 8 117 4 112 3.42e-15 70.9
Msa1277230 AT3G08690.1 34.211 114 66 3 8 117 4 112 3.42e-15 70.9
Msa1277230 AT5G56150.2 34.513 113 64 4 8 116 4 110 4.51e-15 69.7
Msa1277230 AT4G27960.1 33.333 114 67 3 8 117 4 112 5.55e-15 70.5
Msa1277230 AT1G64230.2 33.333 114 67 3 8 117 4 112 6.75e-15 70.1
Msa1277230 AT1G64230.1 33.333 114 67 3 8 117 4 112 6.75e-15 70.1
Msa1277230 AT5G41700.5 33.333 114 67 3 8 117 4 112 1.02e-14 69.7
Msa1277230 AT5G41700.2 33.333 114 67 3 8 117 4 112 1.02e-14 69.7
Msa1277230 AT5G41700.1 33.333 114 67 3 8 117 4 112 1.02e-14 69.7
Msa1277230 AT4G27960.2 33.333 114 67 3 8 117 34 142 1.29e-14 70.1
Msa1277230 AT5G41700.4 34.783 115 65 4 8 117 4 113 1.97e-14 68.9
Msa1277230 AT5G53300.2 32.456 114 68 3 8 117 4 112 2.12e-14 68.9
Msa1277230 AT5G53300.4 32.456 114 68 3 8 117 4 112 2.12e-14 68.9
Msa1277230 AT5G53300.1 32.456 114 68 3 8 117 4 112 2.12e-14 68.9
Msa1277230 AT2G02760.1 31.250 112 68 3 8 115 7 113 6.37e-14 67.8
Msa1277230 AT2G02760.2 31.250 112 68 3 8 115 7 113 6.37e-14 67.8
Msa1277230 AT2G02760.4 31.250 112 68 3 8 115 7 113 6.37e-14 67.8
Msa1277230 AT2G02760.3 31.250 112 68 3 8 115 7 113 6.37e-14 67.8
Msa1277230 AT1G14400.1 31.250 112 68 3 8 115 7 113 6.78e-14 67.8
Msa1277230 AT1G14400.2 31.250 112 68 3 8 115 7 113 6.78e-14 67.8
Msa1277230 AT2G16740.1 30.702 114 70 3 8 117 4 112 2.63e-13 65.9
Msa1277230 AT5G41700.3 33.654 104 60 3 8 107 4 102 3.50e-13 65.5
Msa1277230 AT1G64230.5 29.915 117 69 4 5 117 47 154 1.16e-12 65.1
Msa1277230 AT1G64230.4 29.915 117 69 4 5 117 47 154 1.16e-12 65.1
Msa1277230 AT5G62540.1 31.250 112 68 3 8 115 7 113 1.65e-12 63.9
Msa1277230 AT5G53300.3 32.692 104 61 3 8 107 4 102 2.14e-12 62.4
Msa1277230 AT1G36340.2 30.841 107 68 3 3 107 6 108 2.92e-12 63.2
Msa1277230 AT1G36340.1 30.841 107 68 3 3 107 6 108 2.92e-12 63.2
Msa1277230 AT1G64230.3 31.148 122 66 4 8 116 4 120 4.19e-12 62.8
Msa1277230 AT3G08700.2 31.579 114 68 4 8 116 4 112 5.04e-12 62.4
Msa1277230 AT3G08700.1 31.579 114 68 4 8 116 4 112 5.04e-12 62.4

Find 92 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACATTGGATTCCAACTTTC+AGG 0.160053 8_3:+12424744 None:intergenic
TTATTACTCTTCTCCATCTT+TGG 0.164344 8_3:-12423482 Msa1277230:CDS
TCTCTTAAACGCCGCCGTTT+TGG 0.209526 8_3:-12427962 Msa1277230:five_prime_UTR
CTCCATCTTTGGGGTTGTTA+TGG 0.233457 8_3:-12423471 Msa1277230:CDS
GTGAAGGACGGGCCACAATA+TGG 0.237187 8_3:+12425579 None:intergenic
TATTACTCTTCTCCATCTTT+GGG 0.241159 8_3:-12423481 Msa1277230:CDS
AAAAGCGGTAAATTACATTA+TGG 0.269229 8_3:+12423004 None:intergenic
CTGATTCCAGGAGGTTTATA+AGG 0.284681 8_3:+12425017 None:intergenic
AGGATTTGTATAGGAAATAT+TGG 0.289528 8_3:-12423342 Msa1277230:three_prime_UTR
TAAAAGTCCGAGGTCTGTTT+TGG 0.291867 8_3:-12423603 Msa1277230:CDS
TTCCTTGCAGTGCAACATTC+AGG 0.294415 8_3:-12423721 Msa1277230:intron
GATCCGATTTCCCCAAATAT+TGG 0.331926 8_3:+12427867 None:intergenic
TATGAATGCAGCATACTTAC+CGG 0.344644 8_3:-12424542 Msa1277230:intron
CCACCAATATTTGGGGAAAT+CGG 0.346930 8_3:-12427870 Msa1277230:five_prime_UTR
TACCGGGCTTCTTTCATTCA+TGG 0.353871 8_3:-12424525 Msa1277230:intron
TGGTTCTTTATGTTCTGCTT+AGG 0.354652 8_3:-12423381 Msa1277230:three_prime_UTR
TGTAGCATGACAACACCTAA+TGG 0.360595 8_3:-12424913 Msa1277230:intron
TGGGTACAAGGGTCCATAAA+AGG 0.372988 8_3:-12423417 Msa1277230:three_prime_UTR
CTTATAAACCTCCTGGAATC+AGG 0.389083 8_3:-12425016 Msa1277230:intron
AAGTATCAATACCAAGAAAC+TGG 0.417883 8_3:+12423266 None:intergenic
CCACAGGAGAAGACTTGAAA+AGG 0.427561 8_3:-12423565 Msa1277230:CDS
ACAAGAAGGCACCTGATTCC+AGG 0.429061 8_3:+12425005 None:intergenic
TAAAAGGATTATCATGGAAC+TGG 0.431498 8_3:-12423401 Msa1277230:three_prime_UTR
CGGGCCACAATATGGGAAAC+TGG 0.431636 8_3:+12425587 None:intergenic
GTTGTACTTCTCCACGTACT+CGG 0.441817 8_3:+12423688 None:intergenic
TGTGTCATGAACCGCCCATT+AGG 0.446261 8_3:+12424898 None:intergenic
GAAGACTTGAAAAGGGTTGA+GGG 0.448975 8_3:-12423557 Msa1277230:CDS
AGCGAGGGAACACCTTTCTC+AGG 0.450214 8_3:-12425212 Msa1277230:intron
TTGTACTTCTCCACGTACTC+GGG 0.458106 8_3:+12423689 None:intergenic
ATTTGGGGAAATCGGATCTC+AGG 0.461390 8_3:-12427862 Msa1277230:intron
TTGCAGTTCATCCTGAAAGT+TGG 0.464526 8_3:-12424755 Msa1277230:intron
GAAAAGGGTTGAGGGATTGA+AGG 0.471212 8_3:-12423549 Msa1277230:CDS
AAACATACTGCAAATGATGC+TGG 0.474451 8_3:-12423178 Msa1277230:three_prime_UTR
GAATATCCTTATAAACCTCC+TGG 0.476050 8_3:-12425023 Msa1277230:CDS
ATGTCTAACAGGATTTGTAT+AGG 0.477090 8_3:-12423351 Msa1277230:three_prime_UTR
GTAGCATGACAACACCTAAT+GGG 0.487721 8_3:-12424912 Msa1277230:intron
TGCCATAACAACCCCAAAGA+TGG 0.488741 8_3:+12423469 None:intergenic
GGTCCATAAAAGGATTATCA+TGG 0.489985 8_3:-12423407 Msa1277230:three_prime_UTR
TGAAGGACGGGCCACAATAT+GGG 0.495022 8_3:+12425580 None:intergenic
AGAAGACTTGAAAAGGGTTG+AGG 0.497193 8_3:-12423558 Msa1277230:CDS
TCATATCTCAGATTACGTAT+TGG 0.507101 8_3:-12425240 Msa1277230:intron
GGAGCCAGTTTCCCATATTG+TGG 0.524830 8_3:-12425591 Msa1277230:CDS
TACACTGCCAGTGGTTGGAC+TGG 0.524839 8_3:+12423871 None:intergenic
AGTAATAACATCATCCAGGT+TGG 0.531733 8_3:+12423497 None:intergenic
CGCCACTCAAGAATATCACT+TGG 0.539408 8_3:+12425557 None:intergenic
CTTATTCTCTTACAATGTGG+AGG 0.541075 8_3:-12423227 Msa1277230:three_prime_UTR
GAAAACAAGGATTTCCAACC+TGG 0.547451 8_3:-12423511 Msa1277230:CDS
AACATACTGCAAATGATGCT+GGG 0.547656 8_3:-12423177 Msa1277230:three_prime_UTR
CCGATTTCCCCAAATATTGG+TGG 0.548448 8_3:+12427870 None:intergenic
ATGCATCAAGCGCCTTCAGA+AGG 0.549944 8_3:-12426049 Msa1277230:CDS
AATATCACTTGGTGAAGGAC+GGG 0.551464 8_3:+12425568 None:intergenic
ATCCAATGTGGTCTGTATCA+AGG 0.552283 8_3:-12424731 Msa1277230:intron
ATTACTCTTCTCCATCTTTG+GGG 0.552481 8_3:-12423480 Msa1277230:CDS
GAATATCACTTGGTGAAGGA+CGG 0.560660 8_3:+12425567 None:intergenic
TAATTTGCTAAACCTGAGAA+AGG 0.560758 8_3:+12425200 None:intergenic
GAAGAGTAATAACATCATCC+AGG 0.567563 8_3:+12423493 None:intergenic
TACCATGAATGAAAGAAGCC+CGG 0.570761 8_3:+12424523 None:intergenic
CACAGGAGAAGACTTGAAAA+GGG 0.572298 8_3:-12423564 Msa1277230:CDS
GAAAACAATGTAGAGTCCAC+AGG 0.573857 8_3:-12423581 Msa1277230:CDS
CAGCCAACGTCATCAGAGAC+TGG 0.574761 8_3:-12423632 Msa1277230:CDS
AGCGAAAACAAATTCCAAAA+CGG 0.576110 8_3:+12427948 None:intergenic
TTGAGGGATTGAAGGATGCG+AGG 0.577968 8_3:-12423541 Msa1277230:CDS
GTGCTCTATACTCCTTCTGA+AGG 0.582054 8_3:+12426037 None:intergenic
ATGAATGCAGCATACTTACC+GGG 0.582437 8_3:-12424541 Msa1277230:intron
ATCTCAGATTACGTATTGGA+AGG 0.583968 8_3:-12425236 Msa1277230:intron
AAAATTCACAGCTGGAGTAG+AGG 0.587096 8_3:+12423443 None:intergenic
GTGTTTACACTGCCAGTGGT+TGG 0.587196 8_3:+12423866 None:intergenic
ACCTTAAACTACATTAAAAG+CGG 0.587833 8_3:+12422989 None:intergenic
GAAGATGTTCCCCGAGTACG+TGG 0.599484 8_3:-12423699 Msa1277230:CDS
TGTACTTCTCCACGTACTCG+GGG 0.603988 8_3:+12423690 None:intergenic
ATGGATACCAGTCCAACCAC+TGG 0.607472 8_3:-12423878 Msa1277230:CDS
TGTATAGGAAATATTGGACA+TGG 0.608377 8_3:-12423336 Msa1277230:three_prime_UTR
GACCTTGATACAGACCACAT+TGG 0.612471 8_3:+12424729 None:intergenic
TACGTATTGGAAGGAAGCGA+GGG 0.615267 8_3:-12425227 Msa1277230:CDS
GCGAGGAGAAACAGAAAACA+AGG 0.615922 8_3:-12423524 Msa1277230:CDS
ACTCTTATTCTCTTACAATG+TGG 0.623980 8_3:-12423230 Msa1277230:three_prime_UTR
TTACGTATTGGAAGGAAGCG+AGG 0.625291 8_3:-12425228 Msa1277230:CDS
GATTCAGAACAGAATCGAGA+AGG 0.631381 8_3:+12426092 None:intergenic
TCTGTTCTGAATCAGTCGAA+TGG 0.634992 8_3:-12426082 Msa1277230:exon
AGTAGTGTTTACACTGCCAG+TGG 0.639725 8_3:+12423862 None:intergenic
CACCAAGTGATATTCTTGAG+TGG 0.643937 8_3:-12425559 Msa1277230:CDS
AGTGTGGTTGGTCGTGAGTG+TGG 0.644699 8_3:-12423095 Msa1277230:three_prime_UTR
GTTCTGAATCAGTCGAATGG+CGG 0.661506 8_3:-12426079 Msa1277230:exon
TCAAGAATATCACTTGGTGA+AGG 0.663216 8_3:+12425563 None:intergenic
GGTTTATAAGGATATTCCTG+AGG 0.670816 8_3:+12425029 None:intergenic
CTGAAAGTTGGAATCCAATG+TGG 0.673790 8_3:-12424743 Msa1277230:CDS
TGACCAGTCTCTGATGACGT+TGG 0.673844 8_3:+12423629 None:intergenic
GAAAACAAATTCCAAAACGG+CGG 0.699921 8_3:+12427951 None:intergenic
GCATGACAACACCTAATGGG+CGG 0.704176 8_3:-12424909 Msa1277230:CDS
CTGGTCAAGATAAAAGTCCG+AGG 0.710589 8_3:-12423613 Msa1277230:CDS
AAGGGGCAAAATAATTAACG+CGG 0.712004 8_3:-12427910 Msa1277230:five_prime_UTR
AGAAGGCACCTGATTCCAGG+AGG 0.717165 8_3:+12425008 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGTTTTTTTTTATTTG+TGG - chr8_3:12423291-12423310 Msa1277230:three_prime_UTR 10.0%
!!! TTTAGTTTTTTTTTATTTGT+GGG - chr8_3:12423292-12423311 Msa1277230:three_prime_UTR 10.0%
!! AATAAATTGAAAATAGAATT+AGG + chr8_3:12424821-12424840 None:intergenic 10.0%
!!! TCACTATTTATTTTTATTTA+TGG - chr8_3:12425042-12425061 Msa1277230:CDS 10.0%
!!! TAATTTTTTCTTTTGAAATT+TGG - chr8_3:12426354-12426373 Msa1277230:intron 10.0%
!!! TTAGTTTTTTTTTATTTGTG+GGG - chr8_3:12423293-12423312 Msa1277230:three_prime_UTR 15.0%
!!! TCTTTTTTATTATTTGATTG+TGG - chr8_3:12423329-12423348 Msa1277230:three_prime_UTR 15.0%
!!! AAATTTTGGTTTTTGATTAA+TGG - chr8_3:12423352-12423371 Msa1277230:three_prime_UTR 15.0%
!!! AATAATTTGACTTTATACAT+AGG - chr8_3:12423646-12423665 Msa1277230:CDS 15.0%
!! ATGGATATTACTATTATTAT+AGG - chr8_3:12423932-12423951 Msa1277230:intron 15.0%
!! AAGAAAATTTATGAATTATG+TGG + chr8_3:12424289-12424308 None:intergenic 15.0%
!!! ACATTTTCCTTTATATTAAA+TGG + chr8_3:12427062-12427081 None:intergenic 15.0%
!!! TTATTTGATTGTGGAAATTT+TGG - chr8_3:12423338-12423357 Msa1277230:three_prime_UTR 20.0%
!! ATGATCCAAACAAAAAATTA+GGG + chr8_3:12423456-12423475 None:intergenic 20.0%
!! ATATGTGAAATTTAAGAAAG+AGG - chr8_3:12423513-12423532 Msa1277230:CDS 20.0%
!! ATAACTAAAATATAGTACAG+AGG + chr8_3:12423584-12423603 None:intergenic 20.0%
!! ATTATAAAACTTACTAACCT+AGG + chr8_3:12423754-12423773 None:intergenic 20.0%
!!! AATATTTTAAGGTAGTCATT+TGG - chr8_3:12423987-12424006 Msa1277230:intron 20.0%
!!! ACTGTCATAGTTTTAATATT+GGG + chr8_3:12424689-12424708 None:intergenic 20.0%
!!! AACTGTCATAGTTTTAATAT+TGG + chr8_3:12424690-12424709 None:intergenic 20.0%
!! TTCAAATATTATGATGATCT+AGG + chr8_3:12425352-12425371 None:intergenic 20.0%
!!! AATTTTATTACTGTATTTGC+AGG - chr8_3:12425396-12425415 Msa1277230:intron 20.0%
!!! CATTATAAAAAGTATGAACT+TGG + chr8_3:12426077-12426096 None:intergenic 20.0%
!! AAATTAAACTGTAGCAATAT+GGG + chr8_3:12426213-12426232 None:intergenic 20.0%
!! AAAATTAAACTGTAGCAATA+TGG + chr8_3:12426214-12426233 None:intergenic 20.0%
!!! TTTTTATGAAAAACCCTTTT+CGG + chr8_3:12426840-12426859 None:intergenic 20.0%
!!! AAGGGTTTTTCATAAAAAAA+TGG - chr8_3:12426842-12426861 Msa1277230:intron 20.0%
!!! TAAGAGTTTTTAAAATAGTG+TGG - chr8_3:12427897-12427916 Msa1277230:five_prime_UTR 20.0%
!!! TTAATTATTTTGCCCCTTTT+TGG + chr8_3:12423096-12423115 None:intergenic 25.0%
!!! ATTTTTTGCCACCAATATTT+GGG - chr8_3:12423130-12423149 Msa1277230:three_prime_UTR 25.0%
! AAACCTTGAATTATCGAATT+GGG + chr8_3:12423203-12423222 None:intergenic 25.0%
! ACAAATCAGAGAAAAAGAAA+GGG + chr8_3:12423226-12423245 None:intergenic 25.0%
! TACAAATCAGAGAAAAAGAA+AGG + chr8_3:12423227-12423246 None:intergenic 25.0%
!!! TAATGGATCATTGTTGATTT+TGG - chr8_3:12423369-12423388 Msa1277230:three_prime_UTR 25.0%
! CATGATCCAAACAAAAAATT+AGG + chr8_3:12423457-12423476 None:intergenic 25.0%
!!! CATAAGTAGTTTTATGCTTT+AGG - chr8_3:12423797-12423816 Msa1277230:intron 25.0%
! AATTATGTGGTATGAAATCA+GGG + chr8_3:12424276-12424295 None:intergenic 25.0%
!!! TACTCCATTTTTCTTCATTA+TGG - chr8_3:12424569-12424588 Msa1277230:intron 25.0%
! AGTACCATAATGAAGAAAAA+TGG + chr8_3:12424576-12424595 None:intergenic 25.0%
!! ATTTTTCTTCATTATGGTAC+TGG - chr8_3:12424575-12424594 Msa1277230:intron 25.0%
! ATAAGAGCTATAGTAGAATA+AGG + chr8_3:12424648-12424667 None:intergenic 25.0%
! TAAGAGTAAACTAAAAAAGG+CGG + chr8_3:12424758-12424777 None:intergenic 25.0%
! TGCTACAAACCAAAAATAAT+GGG + chr8_3:12424782-12424801 None:intergenic 25.0%
! ATGCTACAAACCAAAAATAA+TGG + chr8_3:12424783-12424802 None:intergenic 25.0%
! ATAAATACACAAGAATAGAG+AGG + chr8_3:12425131-12425150 None:intergenic 25.0%
! TTCTTGTGTATTTATGTATC+TGG - chr8_3:12425136-12425155 Msa1277230:intron 25.0%
! TCTTGTGTATTTATGTATCT+GGG - chr8_3:12425137-12425156 Msa1277230:intron 25.0%
!!! TAGTATTTTGATGTTGTTTG+TGG - chr8_3:12425162-12425181 Msa1277230:intron 25.0%
! TCATGCTATAAACATTTCAT+CGG + chr8_3:12425188-12425207 None:intergenic 25.0%
! CTGAATAATTGTTTCATGAT+TGG - chr8_3:12425272-12425291 Msa1277230:intron 25.0%
!! TAATTGTTTCATGATTGGTT+AGG - chr8_3:12425277-12425296 Msa1277230:intron 25.0%
!! AAGCTCTAATATCCAAAAAT+GGG - chr8_3:12425519-12425538 Msa1277230:intron 25.0%
!! ATATTCTGTTTTCCCATTTT+TGG + chr8_3:12425534-12425553 None:intergenic 25.0%
! AACAGAATATGTTGAATCTT+TGG - chr8_3:12425544-12425563 Msa1277230:intron 25.0%
! CTGACAATATAGTAGTATTA+AGG + chr8_3:12425655-12425674 None:intergenic 25.0%
!! GTAATTTATTTGTTAGCTAG+TGG - chr8_3:12425715-12425734 Msa1277230:intron 25.0%
! AGTTGAGATAGTAATAAACT+GGG + chr8_3:12425896-12425915 None:intergenic 25.0%
! AAGTTGAGATAGTAATAAAC+TGG + chr8_3:12425897-12425916 None:intergenic 25.0%
!!! TTTTTAGGTGGATATTACTA+TGG - chr8_3:12425943-12425962 Msa1277230:intron 25.0%
!!! CTACAGTTTAATTTTTCTGT+GGG - chr8_3:12426219-12426238 Msa1277230:intron 25.0%
!!! TACAGTTTAATTTTTCTGTG+GGG - chr8_3:12426220-12426239 Msa1277230:intron 25.0%
!!! AGTTTTGAAGTTCTTTTATG+TGG - chr8_3:12426312-12426331 Msa1277230:intron 25.0%
! CATGGTATGTTATTATGTTA+TGG - chr8_3:12426501-12426520 Msa1277230:intron 25.0%
! TTCATATTCTAATTGAACTC+TGG - chr8_3:12426528-12426547 Msa1277230:intron 25.0%
! TTTGTTTGCTCATAAGATAT+TGG - chr8_3:12426572-12426591 Msa1277230:intron 25.0%
! TTGTTTGCTCATAAGATATT+GGG - chr8_3:12426573-12426592 Msa1277230:intron 25.0%
!! AAAAAGAGTGATTTTCCTTA+TGG + chr8_3:12426673-12426692 None:intergenic 25.0%
!! TAAAATTGTTGTTCCGAAAA+GGG - chr8_3:12426824-12426843 Msa1277230:intron 25.0%
! TATACTTGTACGCATAATAA+TGG - chr8_3:12426966-12426985 Msa1277230:intron 25.0%
! TGTTGAGCCATTTAATATAA+AGG - chr8_3:12427052-12427071 Msa1277230:intron 25.0%
!!! TGAATTTTTTATGGGTACAA+GGG - chr8_3:12427580-12427599 Msa1277230:intron 25.0%
! AGGATTTGTATAGGAAATAT+TGG - chr8_3:12427666-12427685 Msa1277230:intron 25.0%
!!! CTGCATTTTATATTCTAGAA+TGG - chr8_3:12427861-12427880 Msa1277230:intron 25.0%
!!! AGTTTTTAAAATAGTGTGGT+TGG - chr8_3:12427901-12427920 Msa1277230:five_prime_UTR 25.0%
! AAAAGCGGTAAATTACATTA+TGG + chr8_3:12428007-12428026 None:intergenic 25.0%
! ACCTTAAACTACATTAAAAG+CGG + chr8_3:12428022-12428041 None:intergenic 25.0%
AGCGAAAACAAATTCCAAAA+CGG + chr8_3:12423063-12423082 None:intergenic 30.0%
!!! GATTTTTTGCCACCAATATT+TGG - chr8_3:12423129-12423148 Msa1277230:three_prime_UTR 30.0%
!!! TTTTTTGCCACCAATATTTG+GGG - chr8_3:12423131-12423150 Msa1277230:three_prime_UTR 30.0%
GAAACCTTGAATTATCGAAT+TGG + chr8_3:12423204-12423223 None:intergenic 30.0%
!! GGTAAGGTAAATTGATTTTG+GGG + chr8_3:12423435-12423454 None:intergenic 30.0%
!! GGGTAAGGTAAATTGATTTT+GGG + chr8_3:12423436-12423455 None:intergenic 30.0%
!! AGGGTAAGGTAAATTGATTT+TGG + chr8_3:12423437-12423456 None:intergenic 30.0%
CCAAACAAAAAATTAGGGTA+AGG + chr8_3:12423451-12423470 None:intergenic 30.0%
!!! CCTTACCCTAATTTTTTGTT+TGG - chr8_3:12423448-12423467 Msa1277230:CDS 30.0%
ATGTGAATTGCTTGAGTAAT+AGG - chr8_3:12423483-12423502 Msa1277230:CDS 30.0%
AGAAAGAGGATAACTTTGAA+AGG - chr8_3:12423527-12423546 Msa1277230:CDS 30.0%
! GAAAGAGGATAACTTTGAAA+GGG - chr8_3:12423528-12423547 Msa1277230:CDS 30.0%
! ACTTTGAAAGGGATAATTCA+AGG - chr8_3:12423539-12423558 Msa1277230:CDS 30.0%
! CTTTGAAAGGGATAATTCAA+GGG - chr8_3:12423540-12423559 Msa1277230:CDS 30.0%
ATTTGAGAGATGAGTGAATT+TGG - chr8_3:12423673-12423692 Msa1277230:CDS 30.0%
AGAACATATTCATGGGAAAT+TGG - chr8_3:12423826-12423845 Msa1277230:CDS 30.0%
TAACTCTCTATGAACATGAT+AGG - chr8_3:12423905-12423924 Msa1277230:intron 30.0%
TATGAACATGATAGGTTTGA+TGG - chr8_3:12423913-12423932 Msa1277230:intron 30.0%
TTATGTAAGCATCTGAATTG+CGG - chr8_3:12423957-12423976 Msa1277230:intron 30.0%
! GCGGTTACTCAAATATTTTA+AGG - chr8_3:12423976-12423995 Msa1277230:intron 30.0%
AGAGTTTGTGAAATTTGAAG+AGG + chr8_3:12424094-12424113 None:intergenic 30.0%
TGATTTACATACAGTTGTGT+TGG - chr8_3:12424128-12424147 Msa1277230:intron 30.0%
ATTATGTGGTATGAAATCAG+GGG + chr8_3:12424275-12424294 None:intergenic 30.0%
GAATTATGTGGTATGAAATC+AGG + chr8_3:12424277-12424296 None:intergenic 30.0%
GAATTAGGATCGACATTATT+GGG + chr8_3:12424439-12424458 None:intergenic 30.0%
! TGTGTTGTGATATTTTACAG+AGG - chr8_3:12424606-12424625 Msa1277230:intron 30.0%
CTCTTATTAATTCAATGCTG+TGG - chr8_3:12424661-12424680 Msa1277230:intron 30.0%
GGGTAAGAGTAAACTAAAAA+AGG + chr8_3:12424761-12424780 None:intergenic 30.0%
! TACTCTTACCCCATTATTTT+TGG - chr8_3:12424770-12424789 Msa1277230:intron 30.0%
GCTACAAACCAAAAATAATG+GGG + chr8_3:12424781-12424800 None:intergenic 30.0%
! TAGTGAAGAGCAATTTTTGT+CGG + chr8_3:12425028-12425047 None:intergenic 30.0%
ATGTTTATAGCATGAATGAC+TGG - chr8_3:12425193-12425212 Msa1277230:intron 30.0%
TGTTTATAGCATGAATGACT+GGG - chr8_3:12425194-12425213 Msa1277230:intron 30.0%
AGGAGAAAGGAAACATATAT+AGG + chr8_3:12425230-12425249 None:intergenic 30.0%
ACTATAGACACACTATTAAG+AGG + chr8_3:12425250-12425269 None:intergenic 30.0%
! CAAGCTCTAATATCCAAAAA+TGG - chr8_3:12425518-12425537 Msa1277230:intron 30.0%
ATACTACTATATTGTCAGCA+AGG - chr8_3:12425657-12425676 Msa1277230:intron 30.0%
TCATATCTCAGATTACGTAT+TGG - chr8_3:12425768-12425787 Msa1277230:intron 30.0%
!! TAATTTGCTAAACCTGAGAA+AGG + chr8_3:12425811-12425830 None:intergenic 30.0%
!!! ACGTTTTTTGTTCGCTTTTT+AGG - chr8_3:12425928-12425947 Msa1277230:intron 30.0%
!!! TTTTTTGTTCGCTTTTTAGG+TGG - chr8_3:12425931-12425950 Msa1277230:intron 30.0%
! TTGTAAGTTCTTTTACCCAT+TGG - chr8_3:12426160-12426179 Msa1277230:intron 30.0%
TGGGTAACTATGATACAAAT+CGG + chr8_3:12426194-12426213 None:intergenic 30.0%
!! GCTACAGTTTAATTTTTCTG+TGG - chr8_3:12426218-12426237 Msa1277230:intron 30.0%
AGTATGCTGCATTCATAAAT+TGG + chr8_3:12426463-12426482 None:intergenic 30.0%
! TTTTGCGTTTGTTTACCATA+AGG - chr8_3:12426655-12426674 Msa1277230:intron 30.0%
!! CTCTTTGAAATCATTGTTGA+TGG + chr8_3:12426707-12426726 None:intergenic 30.0%
! CTTTTCGGAACAACAATTTT+AGG + chr8_3:12426825-12426844 None:intergenic 30.0%
! CTAAAATTGTTGTTCCGAAA+AGG - chr8_3:12426823-12426842 Msa1277230:intron 30.0%
GTATACAACAAAGACTACTA+TGG + chr8_3:12426951-12426970 None:intergenic 30.0%
GATTTGTGTTCCACAATTAA+TGG - chr8_3:12427260-12427279 Msa1277230:intron 30.0%
TTATTACTCTTCTCCATCTT+TGG - chr8_3:12427526-12427545 Msa1277230:intron 30.0%
TATTACTCTTCTCCATCTTT+GGG - chr8_3:12427527-12427546 Msa1277230:intron 30.0%
!!! TCCAGCTGTGAATTTTTTAT+GGG - chr8_3:12427572-12427591 Msa1277230:intron 30.0%
!!! GTGAATTTTTTATGGGTACA+AGG - chr8_3:12427579-12427598 Msa1277230:intron 30.0%
! GTTCCATGATAATCCTTTTA+TGG + chr8_3:12427607-12427626 None:intergenic 30.0%
TAAAAGGATTATCATGGAAC+TGG - chr8_3:12427607-12427626 Msa1277230:intron 30.0%
ATGTCTAACAGGATTTGTAT+AGG - chr8_3:12427657-12427676 Msa1277230:intron 30.0%
TGTATAGGAAATATTGGACA+TGG - chr8_3:12427672-12427691 Msa1277230:intron 30.0%
AAGTATCAATACCAAGAAAC+TGG + chr8_3:12427745-12427764 None:intergenic 30.0%
ACTCTTATTCTCTTACAATG+TGG - chr8_3:12427778-12427797 Msa1277230:intron 30.0%
!! ACCGCTTTTAATGTAGTTTA+AGG - chr8_3:12428018-12428037 Msa1277230:five_prime_UTR 30.0%
GAAAACAAATTCCAAAACGG+CGG + chr8_3:12423060-12423079 None:intergenic 35.0%
!! GCTGTTTCGTTTTCCAAAAA+GGG - chr8_3:12423080-12423099 Msa1277230:three_prime_UTR 35.0%
! CTGTTTCGTTTTCCAAAAAG+GGG - chr8_3:12423081-12423100 Msa1277230:three_prime_UTR 35.0%
AAGGGGCAAAATAATTAACG+CGG - chr8_3:12423098-12423117 Msa1277230:three_prime_UTR 35.0%
GGTGAAAGAAAGAAGAAAAG+GGG + chr8_3:12423182-12423201 None:intergenic 35.0%
GGGTGAAAGAAAGAAGAAAA+GGG + chr8_3:12423183-12423202 None:intergenic 35.0%
TGGGTGAAAGAAAGAAGAAA+AGG + chr8_3:12423184-12423203 None:intergenic 35.0%
TCACCCAATTCGATAATTCA+AGG - chr8_3:12423197-12423216 Msa1277230:three_prime_UTR 35.0%
!!! ATTGTTGATTTTGGAATCCG+TGG - chr8_3:12423378-12423397 Msa1277230:three_prime_UTR 35.0%
GTACCTCAGAACATATTCAT+GGG - chr8_3:12423819-12423838 Msa1277230:CDS 35.0%
TTTCCCATGAATATGTTCTG+AGG + chr8_3:12423825-12423844 None:intergenic 35.0%
ACATATTCATGGGAAATTGG+TGG - chr8_3:12423829-12423848 Msa1277230:CDS 35.0%
ATTTGGTCCATGTCTTTCAT+GGG - chr8_3:12424004-12424023 Msa1277230:intron 35.0%
TACAAATCCCATGAAAGACA+TGG + chr8_3:12424014-12424033 None:intergenic 35.0%
!!! CATTTGGACAGCTTTTTTCA+TGG - chr8_3:12424063-12424082 Msa1277230:intron 35.0%
AGTCACTTGACTATCTCAAA+TGG + chr8_3:12424249-12424268 None:intergenic 35.0%
ATCGACATTATTGGGTATAG+AGG + chr8_3:12424321-12424340 None:intergenic 35.0%
GGATTAGGATCGACATTATT+GGG + chr8_3:12424329-12424348 None:intergenic 35.0%
CGAATTAGGATCGACATTAT+TGG + chr8_3:12424440-12424459 None:intergenic 35.0%
AGAGCTATAGTAGAATAAGG+AGG + chr8_3:12424645-12424664 None:intergenic 35.0%
CTGCACAACAAAATAAGCAT+TGG + chr8_3:12425070-12425089 None:intergenic 35.0%
!! TTAGCTTGTTCTGTGATCAT+TGG - chr8_3:12425098-12425117 Msa1277230:intron 35.0%
ACACACTATTAAGAGGAGAA+AGG + chr8_3:12425243-12425262 None:intergenic 35.0%
ATGATCTAGGCAATTGATAC+AGG + chr8_3:12425339-12425358 None:intergenic 35.0%
! TCAAGAATATCACTTGGTGA+AGG + chr8_3:12425448-12425467 None:intergenic 35.0%
TACTATATTGTCAGCAAGGA+AGG - chr8_3:12425661-12425680 Msa1277230:intron 35.0%
ATCTCAGATTACGTATTGGA+AGG - chr8_3:12425772-12425791 Msa1277230:intron 35.0%
GATAGTAATAAACTGGGTGT+TGG + chr8_3:12425890-12425909 None:intergenic 35.0%
TGGAAAAATCAAGTTTCCTC+AGG - chr8_3:12425963-12425982 Msa1277230:intron 35.0%
GGTTTATAAGGATATTCCTG+AGG + chr8_3:12425982-12426001 None:intergenic 35.0%
GAATATCCTTATAAACCTCC+TGG - chr8_3:12425985-12426004 Msa1277230:intron 35.0%
!! AAATCGGTTTGTCTTCCAAT+GGG + chr8_3:12426178-12426197 None:intergenic 35.0%
TTGGTTGTATTGTTTGCACT+AGG - chr8_3:12426373-12426392 Msa1277230:intron 35.0%
TGGTTGTATTGTTTGCACTA+GGG - chr8_3:12426374-12426393 Msa1277230:intron 35.0%
TATGAATGCAGCATACTTAC+CGG - chr8_3:12426466-12426485 Msa1277230:intron 35.0%
CAAACAAATGCCATATGAGA+TGG + chr8_3:12426560-12426579 None:intergenic 35.0%
AAGGAAAGAGCCATTAATTG+TGG + chr8_3:12427273-12427292 None:intergenic 35.0%
! TTGTTTTCCAAAACAGACCT+CGG + chr8_3:12427415-12427434 None:intergenic 35.0%
AGTAATAACATCATCCAGGT+TGG + chr8_3:12427514-12427533 None:intergenic 35.0%
GAAGAGTAATAACATCATCC+AGG + chr8_3:12427518-12427537 None:intergenic 35.0%
ATTACTCTTCTCCATCTTTG+GGG - chr8_3:12427528-12427547 Msa1277230:intron 35.0%
!!! CTCCAGCTGTGAATTTTTTA+TGG - chr8_3:12427571-12427590 Msa1277230:intron 35.0%
ACCCATAAAAAATTCACAGC+TGG + chr8_3:12427576-12427595 None:intergenic 35.0%
GGTCCATAAAAGGATTATCA+TGG - chr8_3:12427601-12427620 Msa1277230:intron 35.0%
TGGTTCTTTATGTTCTGCTT+AGG - chr8_3:12427627-12427646 Msa1277230:intron 35.0%
!! TAGGTTTTGTCATGTCTAAC+AGG - chr8_3:12427646-12427665 Msa1277230:intron 35.0%
CTTATTCTCTTACAATGTGG+AGG - chr8_3:12427781-12427800 Msa1277230:intron 35.0%
!! GGCTTGTTTTCTTTTAGTGT+TGG - chr8_3:12427802-12427821 Msa1277230:intron 35.0%
AAACATACTGCAAATGATGC+TGG - chr8_3:12427830-12427849 Msa1277230:intron 35.0%
AACATACTGCAAATGATGCT+GGG - chr8_3:12427831-12427850 Msa1277230:intron 35.0%
!! GTCTAGAAGTGCGTTTTGTA+GGG + chr8_3:12423011-12423030 None:intergenic 40.0%
!! AGTCTAGAAGTGCGTTTTGT+AGG + chr8_3:12423012-12423031 None:intergenic 40.0%
!! CGCTGTTTCGTTTTCCAAAA+AGG - chr8_3:12423079-12423098 Msa1277230:three_prime_UTR 40.0%
CCACCAATATTTGGGGAAAT+CGG - chr8_3:12423138-12423157 Msa1277230:three_prime_UTR 40.0%
GATCCGATTTCCCCAAATAT+TGG + chr8_3:12423144-12423163 None:intergenic 40.0%
GAAAGAAAGAAGAAAAGGGG+TGG + chr8_3:12423179-12423198 None:intergenic 40.0%
!!! TTGATTTTGGAATCCGTGGT+GGG - chr8_3:12423382-12423401 Msa1277230:three_prime_UTR 40.0%
AATTCCCATTATTCCCACCA+CGG + chr8_3:12423398-12423417 None:intergenic 40.0%
! TGGTGGGAATAATGGGAATT+TGG - chr8_3:12423398-12423417 Msa1277230:three_prime_UTR 40.0%
! GGTGGGAATAATGGGAATTT+GGG - chr8_3:12423399-12423418 Msa1277230:three_prime_UTR 40.0%
ATTCAAGGGAGAGAAACATG+AGG - chr8_3:12423554-12423573 Msa1277230:CDS 40.0%
TGATGACTGTGAATCTGTGA+TGG - chr8_3:12423611-12423630 Msa1277230:CDS 40.0%
GATGACTGTGAATCTGTGAT+GGG - chr8_3:12423612-12423631 Msa1277230:CDS 40.0%
GGTACCTCAGAACATATTCA+TGG - chr8_3:12423818-12423837 Msa1277230:CDS 40.0%
!!! TTTTGAAGCACTGACCATAG+AGG - chr8_3:12423876-12423895 Msa1277230:CDS 40.0%
!! TTTGAAGCACTGACCATAGA+GGG - chr8_3:12423877-12423896 Msa1277230:CDS 40.0%
CATTTGGTCCATGTCTTTCA+TGG - chr8_3:12424003-12424022 Msa1277230:intron 40.0%
GGATTTGTAGTTCCTTGTTG+AGG - chr8_3:12424025-12424044 Msa1277230:intron 40.0%
TTTGTAGTTCCTTGTTGAGG+TGG - chr8_3:12424028-12424047 Msa1277230:intron 40.0%
GTGGCGTGTCTTATAACATT+TGG - chr8_3:12424047-12424066 Msa1277230:intron 40.0%
!! TGTGTTGGTTATGACTGAGT+TGG - chr8_3:12424143-12424162 Msa1277230:intron 40.0%
! CGGATTAGGATCGACATTAT+TGG + chr8_3:12424330-12424349 None:intergenic 40.0%
GATCCTAATTCGTACCATGA+TGG - chr8_3:12424448-12424467 Msa1277230:intron 40.0%
GTTCATAATCAATGCTGAGC+AGG - chr8_3:12424852-12424871 Msa1277230:intron 40.0%
GATTCAGAACAGAATCGAGA+AGG + chr8_3:12424919-12424938 None:intergenic 40.0%
! TCTGTTCTGAATCAGTCGAA+TGG - chr8_3:12424926-12424945 Msa1277230:intron 40.0%
CTACAGTGTGTACTTCACAA+AGG - chr8_3:12425300-12425319 Msa1277230:intron 40.0%
! AATATCACTTGGTGAAGGAC+GGG + chr8_3:12425443-12425462 None:intergenic 40.0%
! GAATATCACTTGGTGAAGGA+CGG + chr8_3:12425444-12425463 None:intergenic 40.0%
CACCAAGTGATATTCTTGAG+TGG - chr8_3:12425449-12425468 Msa1277230:intron 40.0%
GTAAAACCCATATGACCAAC+TGG - chr8_3:12425587-12425606 Msa1277230:CDS 40.0%
!! GCAAACCTTACTTTTGCTCT+CGG - chr8_3:12425620-12425639 Msa1277230:intron 40.0%
!! CAAACCTTACTTTTGCTCTC+GGG - chr8_3:12425621-12425640 Msa1277230:intron 40.0%
GTTTCAGCTGTATTGTGTGT+TGG - chr8_3:12425854-12425873 Msa1277230:intron 40.0%
CTGATTCCAGGAGGTTTATA+AGG + chr8_3:12425994-12426013 None:intergenic 40.0%
CTTATAAACCTCCTGGAATC+AGG - chr8_3:12425992-12426011 Msa1277230:intron 40.0%
TCAAGAATGCTGCAACAAGA+AGG + chr8_3:12426020-12426039 None:intergenic 40.0%
TGTAGCATGACAACACCTAA+TGG - chr8_3:12426095-12426114 Msa1277230:five_prime_UTR 40.0%
GTAGCATGACAACACCTAAT+GGG - chr8_3:12426096-12426115 Msa1277230:five_prime_UTR 40.0%
!! CAAATCGGTTTGTCTTCCAA+TGG + chr8_3:12426179-12426198 None:intergenic 40.0%
TTGCAGTTCATCCTGAAAGT+TGG - chr8_3:12426253-12426272 Msa1277230:intron 40.0%
CACATTGGATTCCAACTTTC+AGG + chr8_3:12426267-12426286 None:intergenic 40.0%
CTGAAAGTTGGAATCCAATG+TGG - chr8_3:12426265-12426284 Msa1277230:intron 40.0%
ATCCAATGTGGTCTGTATCA+AGG - chr8_3:12426277-12426296 Msa1277230:intron 40.0%
GTATTGTTTGCACTAGGGAA+TGG - chr8_3:12426379-12426398 Msa1277230:intron 40.0%
ATGAATGCAGCATACTTACC+GGG - chr8_3:12426467-12426486 Msa1277230:intron 40.0%
TACCATGAATGAAAGAAGCC+CGG + chr8_3:12426488-12426507 None:intergenic 40.0%
CTGGTTTCTTCCATCTCATA+TGG - chr8_3:12426547-12426566 Msa1277230:intron 40.0%
GGCAAATGCAAGAGTGATAT+GGG + chr8_3:12426868-12426887 None:intergenic 40.0%
AGGCAAATGCAAGAGTGATA+TGG + chr8_3:12426869-12426888 None:intergenic 40.0%
! CTTGCATTTGCCTCTTTTAG+CGG - chr8_3:12426876-12426895 Msa1277230:intron 40.0%
! TGCCTCTTTTAGCGGTTTTT+TGG - chr8_3:12426884-12426903 Msa1277230:intron 40.0%
! GCCTCTTTTAGCGGTTTTTT+GGG - chr8_3:12426885-12426904 Msa1277230:intron 40.0%
ACCCAAAAAACCGCTAAAAG+AGG + chr8_3:12426889-12426908 None:intergenic 40.0%
!!! CTTTTAGCGGTTTTTTGGGT+AGG - chr8_3:12426889-12426908 Msa1277230:intron 40.0%
!!! GTTTTTTGGGTAGGTTGGTT+GGG - chr8_3:12426898-12426917 Msa1277230:intron 40.0%
AGCTTATGAACACCTACAAC+GGG + chr8_3:12427033-12427052 None:intergenic 40.0%
CAGCTTATGAACACCTACAA+CGG + chr8_3:12427034-12427053 None:intergenic 40.0%
! ACAGACTTCTCTTTTGCAGA+TGG - chr8_3:12427111-12427130 Msa1277230:intron 40.0%
!! ATTGCTCAATGTTGATGGTG+CGG + chr8_3:12427234-12427253 None:intergenic 40.0%
GAGACATTGCTCAATGTTGA+TGG + chr8_3:12427239-12427258 None:intergenic 40.0%
! TAAAAGTCCGAGGTCTGTTT+TGG - chr8_3:12427405-12427424 Msa1277230:intron 40.0%
GAAAACAATGTAGAGTCCAC+AGG - chr8_3:12427427-12427446 Msa1277230:intron 40.0%
CACAGGAGAAGACTTGAAAA+GGG - chr8_3:12427444-12427463 Msa1277230:intron 40.0%
AGAAGACTTGAAAAGGGTTG+AGG - chr8_3:12427450-12427469 Msa1277230:intron 40.0%
GAAGACTTGAAAAGGGTTGA+GGG - chr8_3:12427451-12427470 Msa1277230:intron 40.0%
GAAAACAAGGATTTCCAACC+TGG - chr8_3:12427497-12427516 Msa1277230:intron 40.0%
AAAATTCACAGCTGGAGTAG+AGG + chr8_3:12427568-12427587 None:intergenic 40.0%
!!! GTCTGTTTTTGCCAGTTTCT+TGG - chr8_3:12427731-12427750 Msa1277230:intron 40.0%
CCGATTTCCCCAAATATTGG+TGG + chr8_3:12423141-12423160 None:intergenic 45.0%
ATTTGGGGAAATCGGATCTC+AGG - chr8_3:12423146-12423165 Msa1277230:three_prime_UTR 45.0%
!!! GTTGATTTTGGAATCCGTGG+TGG - chr8_3:12423381-12423400 Msa1277230:three_prime_UTR 45.0%
! GAATCCGTGGTGGGAATAAT+GGG - chr8_3:12423391-12423410 Msa1277230:three_prime_UTR 45.0%
!! TGAGTGAATTTGGAGTGCTG+TGG - chr8_3:12423683-12423702 Msa1277230:CDS 45.0%
!! TTTGGAGTGCTGTGGTTTGT+TGG - chr8_3:12423691-12423710 Msa1277230:CDS 45.0%
TATGCAGTGAGAGTTGTCCT+AGG - chr8_3:12423734-12423753 Msa1277230:intron 45.0%
!! TTGAAGCACTGACCATAGAG+GGG - chr8_3:12423878-12423897 Msa1277230:CDS 45.0%
GAGAGTTATGAACCCCTCTA+TGG + chr8_3:12423893-12423912 None:intergenic 45.0%
GATCCTAATCCGTACCTTGA+TGG - chr8_3:12424338-12424357 Msa1277230:intron 45.0%
TACTGATGACAGTTCACGTG+TGG - chr8_3:12424384-12424403 Msa1277230:intron 45.0%
ACTGATGACAGTTCACGTGT+GGG - chr8_3:12424385-12424404 Msa1277230:intron 45.0%
CAGCCATCATGGTACGAATT+AGG + chr8_3:12424454-12424473 None:intergenic 45.0%
TACTGATGACAGTTCACGTG+TGG - chr8_3:12424384-12424403 Msa1277230:intron 45.0%
ACTGATGACAGTTCACGTGT+GGG - chr8_3:12424385-12424404 Msa1277230:intron 45.0%
! GTTCTGAATCAGTCGAATGG+CGG - chr8_3:12424929-12424948 Msa1277230:intron 45.0%
GTGCTCTATACTCCTTCTGA+AGG + chr8_3:12424974-12424993 None:intergenic 45.0%
CAGTGTGTACTTCACAAAGG+TGG - chr8_3:12425303-12425322 Msa1277230:intron 45.0%
CGCCACTCAAGAATATCACT+TGG + chr8_3:12425454-12425473 None:intergenic 45.0%
TTGCGACCAGTTGGTCATAT+GGG + chr8_3:12425596-12425615 None:intergenic 45.0%
TTACGTATTGGAAGGAAGCG+AGG - chr8_3:12425780-12425799 Msa1277230:intron 45.0%
TACGTATTGGAAGGAAGCGA+GGG - chr8_3:12425781-12425800 Msa1277230:intron 45.0%
GACCTTGATACAGACCACAT+TGG + chr8_3:12426282-12426301 None:intergenic 45.0%
TACCGGGCTTCTTTCATTCA+TGG - chr8_3:12426483-12426502 Msa1277230:intron 45.0%
!!! TAGCGGTTTTTTGGGTAGGT+TGG - chr8_3:12426893-12426912 Msa1277230:intron 45.0%
!!! GGTTTTTTGGGTAGGTTGGT+TGG - chr8_3:12426897-12426916 Msa1277230:intron 45.0%
CTTATGAACACCTACAACGG+GGG + chr8_3:12427031-12427050 None:intergenic 45.0%
GCTTATGAACACCTACAACG+GGG + chr8_3:12427032-12427051 None:intergenic 45.0%
AGTAGTGTTTACACTGCCAG+TGG + chr8_3:12427149-12427168 None:intergenic 45.0%
! TTTTGCTAGACGCTGCTTCT+CGG + chr8_3:12427176-12427195 None:intergenic 45.0%
TTCCTTGCAGTGCAACATTC+AGG - chr8_3:12427287-12427306 Msa1277230:intron 45.0%
TTCCTGAATGTTGCACTGCA+AGG + chr8_3:12427292-12427311 None:intergenic 45.0%
TTGTACTTCTCCACGTACTC+GGG + chr8_3:12427322-12427341 None:intergenic 45.0%
GTTGTACTTCTCCACGTACT+CGG + chr8_3:12427323-12427342 None:intergenic 45.0%
CTGGTCAAGATAAAAGTCCG+AGG - chr8_3:12427395-12427414 Msa1277230:intron 45.0%
!!! CCTTTTCAAGTCTTCTCCTG+TGG + chr8_3:12427446-12427465 None:intergenic 45.0%
CCACAGGAGAAGACTTGAAA+AGG - chr8_3:12427443-12427462 Msa1277230:intron 45.0%
GAAAAGGGTTGAGGGATTGA+AGG - chr8_3:12427459-12427478 Msa1277230:intron 45.0%
GCGAGGAGAAACAGAAAACA+AGG - chr8_3:12427484-12427503 Msa1277230:intron 45.0%
!! CTCCATCTTTGGGGTTGTTA+TGG - chr8_3:12427537-12427556 Msa1277230:intron 45.0%
TGCCATAACAACCCCAAAGA+TGG + chr8_3:12427542-12427561 None:intergenic 45.0%
TGGGTACAAGGGTCCATAAA+AGG - chr8_3:12427591-12427610 Msa1277230:intron 45.0%
ACTGGCAAAAACAGACACGA+AGG + chr8_3:12427727-12427746 None:intergenic 45.0%
! TCTCTTAAACGCCGCCGTTT+TGG - chr8_3:12423046-12423065 Msa1277230:three_prime_UTR 50.0%
! GGAATCCGTGGTGGGAATAA+TGG - chr8_3:12423390-12423409 Msa1277230:three_prime_UTR 50.0%
TAAGACACGCCACCTCAACA+AGG + chr8_3:12424040-12424059 None:intergenic 50.0%
CAGCCATCAAGGTACGGATT+AGG + chr8_3:12424344-12424363 None:intergenic 50.0%
TGTGAGCAGCCATCAAGGTA+CGG + chr8_3:12424350-12424369 None:intergenic 50.0%
ATGCATCAAGCGCCTTCAGA+AGG - chr8_3:12424959-12424978 Msa1277230:intron 50.0%
GGAGCCAGTTTCCCATATTG+TGG - chr8_3:12425417-12425436 Msa1277230:intron 50.0%
TGAAGGACGGGCCACAATAT+GGG + chr8_3:12425431-12425450 None:intergenic 50.0%
GTTGCGACCAGTTGGTCATA+TGG + chr8_3:12425597-12425616 None:intergenic 50.0%
AGAGCCCGAGAGCAAAAGTA+AGG + chr8_3:12425628-12425647 None:intergenic 50.0%
!! ACAAGAAGGCACCTGATTCC+AGG + chr8_3:12426006-12426025 None:intergenic 50.0%
GCATGACAACACCTAATGGG+CGG - chr8_3:12426099-12426118 Msa1277230:five_prime_UTR 50.0%
TGTGTCATGAACCGCCCATT+AGG + chr8_3:12426113-12426132 None:intergenic 50.0%
!! TTTGGGTAGGTTGGTTGGGA+TGG - chr8_3:12426902-12426921 Msa1277230:intron 50.0%
!! TTGGGTAGGTTGGTTGGGAT+GGG - chr8_3:12426903-12426922 Msa1277230:intron 50.0%
TTGTTAAGCTCCCCCGTTGT+AGG - chr8_3:12427018-12427037 Msa1277230:intron 50.0%
ATGGATACCAGTCCAACCAC+TGG - chr8_3:12427130-12427149 Msa1277230:intron 50.0%
GTGTTTACACTGCCAGTGGT+TGG + chr8_3:12427145-12427164 None:intergenic 50.0%
TGTACTTCTCCACGTACTCG+GGG + chr8_3:12427321-12427340 None:intergenic 50.0%
! TGACCAGTCTCTGATGACGT+TGG + chr8_3:12427382-12427401 None:intergenic 50.0%
ACACGTGTGAGCAGCCATCA+AGG + chr8_3:12424355-12424374 None:intergenic 55.0%
ACACGTGTGAGCAGCCATCA+TGG + chr8_3:12424355-12424374 None:intergenic 55.0%
CGGGCCACAATATGGGAAAC+TGG + chr8_3:12425424-12425443 None:intergenic 55.0%
GTGAAGGACGGGCCACAATA+TGG + chr8_3:12425432-12425451 None:intergenic 55.0%
TTTGCTGCGTTGCGACCAGT+TGG + chr8_3:12425605-12425624 None:intergenic 55.0%
AGCGAGGGAACACCTTTCTC+AGG - chr8_3:12425796-12425815 Msa1277230:intron 55.0%
!! AGAAGGCACCTGATTCCAGG+AGG + chr8_3:12426003-12426022 None:intergenic 55.0%
!! GTAGGTTGGTTGGGATGGGA+GGG - chr8_3:12426907-12426926 Msa1277230:intron 55.0%
!! TAGGTTGGTTGGGATGGGAG+GGG - chr8_3:12426908-12426927 Msa1277230:intron 55.0%
TACACTGCCAGTGGTTGGAC+TGG + chr8_3:12427140-12427159 None:intergenic 55.0%
GAAGATGTTCCCCGAGTACG+TGG - chr8_3:12427309-12427328 Msa1277230:intron 55.0%
CAGCCAACGTCATCAGAGAC+TGG - chr8_3:12427376-12427395 Msa1277230:intron 55.0%
! AGTGTGGTTGGTCGTGAGTG+TGG - chr8_3:12427913-12427932 Msa1277230:five_prime_UTR 55.0%
!! GGTAGGTTGGTTGGGATGGG+AGG - chr8_3:12426906-12426925 Msa1277230:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 12422983 12428047 12422983 ID=Msa1277230;Name=Msa1277230
chr8_3 mRNA 12422983 12428047 12422983 ID=Msa1277230-mRNA-1;Parent=Msa1277230;Name=Msa1277230-mRNA-1;_AED=0.08;_eAED=0.08;_QI=256|0.88|0.9|1|0.88|0.8|10|465|245
chr8_3 exon 12422983 12423733 12422983 ID=Msa1277230-mRNA-1:exon:5036;Parent=Msa1277230-mRNA-1
chr8_3 exon 12423809 12423915 12423809 ID=Msa1277230-mRNA-1:exon:5035;Parent=Msa1277230-mRNA-1
chr8_3 exon 12424526 12424553 12424526 ID=Msa1277230-mRNA-1:exon:5034;Parent=Msa1277230-mRNA-1
chr8_3 exon 12424732 12424771 12424732 ID=Msa1277230-mRNA-1:exon:5033;Parent=Msa1277230-mRNA-1
chr8_3 exon 12424869 12424930 12424869 ID=Msa1277230-mRNA-1:exon:5032;Parent=Msa1277230-mRNA-1
chr8_3 exon 12425017 12425080 12425017 ID=Msa1277230-mRNA-1:exon:5031;Parent=Msa1277230-mRNA-1
chr8_3 exon 12425213 12425251 12425213 ID=Msa1277230-mRNA-1:exon:5030;Parent=Msa1277230-mRNA-1
chr8_3 exon 12425558 12425612 12425558 ID=Msa1277230-mRNA-1:exon:5029;Parent=Msa1277230-mRNA-1
chr8_3 exon 12426029 12426156 12426029 ID=Msa1277230-mRNA-1:exon:5028;Parent=Msa1277230-mRNA-1
chr8_3 exon 12427863 12428047 12427863 ID=Msa1277230-mRNA-1:exon:5027;Parent=Msa1277230-mRNA-1
chr8_3 five_prime_UTR 12427863 12428047 12427863 ID=Msa1277230-mRNA-1:five_prime_utr;Parent=Msa1277230-mRNA-1
chr8_3 five_prime_UTR 12426086 12426156 12426086 ID=Msa1277230-mRNA-1:five_prime_utr;Parent=Msa1277230-mRNA-1
chr8_3 CDS 12426029 12426085 12426029 ID=Msa1277230-mRNA-1:cds;Parent=Msa1277230-mRNA-1
chr8_3 CDS 12425558 12425612 12425558 ID=Msa1277230-mRNA-1:cds;Parent=Msa1277230-mRNA-1
chr8_3 CDS 12425213 12425251 12425213 ID=Msa1277230-mRNA-1:cds;Parent=Msa1277230-mRNA-1
chr8_3 CDS 12425017 12425080 12425017 ID=Msa1277230-mRNA-1:cds;Parent=Msa1277230-mRNA-1
chr8_3 CDS 12424869 12424930 12424869 ID=Msa1277230-mRNA-1:cds;Parent=Msa1277230-mRNA-1
chr8_3 CDS 12424732 12424771 12424732 ID=Msa1277230-mRNA-1:cds;Parent=Msa1277230-mRNA-1
chr8_3 CDS 12424526 12424553 12424526 ID=Msa1277230-mRNA-1:cds;Parent=Msa1277230-mRNA-1
chr8_3 CDS 12423809 12423915 12423809 ID=Msa1277230-mRNA-1:cds;Parent=Msa1277230-mRNA-1
chr8_3 CDS 12423448 12423733 12423448 ID=Msa1277230-mRNA-1:cds;Parent=Msa1277230-mRNA-1
chr8_3 three_prime_UTR 12422983 12423447 12422983 ID=Msa1277230-mRNA-1:three_prime_utr;Parent=Msa1277230-mRNA-1
Gene Sequence

>Msa1277230

ATGGCGGAGAAAGCATGCATCAAGCGCCTTCAGAAGGAGTATAGAGCACTTTGTAAAGAGCCAGTTTCCCATATTGTGGCCCGTCCTTCACCAAGTGATATTCTTGAGTGGCATTACGTATTGGAAGGAAGCGAGGGAACACCTTTCTCAGGTGGATATTACTATGGAAAAATCAAGTTTCCTCAGGAATATCCTTATAAACCTCCTGGAATCAGCATGACAACACCTAATGGGCGGTTCATGACACAGAAAAAGATCTGTTTATCAATGAGCGATTTTCATCCTGAAAGTTGGAATCCAATGTGGTCTGTATCAAGCATACTTACCGGGCTTCTTTCATTCATGACTTCTCTTTTGCAGATGGATACCAGTCCAACCACTGGCAGTGTAAACACTACTACTGCCGAGAAGCAGCGTCTAGCAAAATCTTCAATGTCTTTCAATTGTAAGAATGCAACATTCAGGAAGATGTTCCCCGAGTACGTGGAGAAGTACAACAAGCAGCAGCTTTCTGAGCAAGTTACTTCTGAGCAGCCAACGTCATCAGAGACTGGTCAAGATAAAAGTCCGAGGTCTGTTTTGGAAAACAATGTAGAGTCCACAGGAGAAGACTTGAAAAGGGTTGAGGGATTGAAGGATGCGAGGAGAAACAGAAAACAAGGATTTCCAACCTGGATGATGTTATTACTCTTCTCCATCTTTGGGGTTGTTATGGCATTACCTCTACTCCAGCTGTGA

Protein sequence

>Msa1277230

MAEKACIKRLQKEYRALCKEPVSHIVARPSPSDILEWHYVLEGSEGTPFSGGYYYGKIKFPQEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMTSLLQMDTSPTTGSVNTTTAEKQRLAKSSMSFNCKNATFRKMFPEYVEKYNKQQLSEQVTSEQPTSSETGQDKSPRSVLENNVESTGEDLKRVEGLKDARRNRKQGFPTWMMLLLFSIFGVVMALPLLQL*