AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1175200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175200 MtrunA17_Chr8g0345331 95.122 246 6 2 1 245 1 241 1.51e-175 482
Msa1175200 MtrunA17_Chr4g0068301 32.967 182 116 2 6 187 11 186 3.15e-33 122
Msa1175200 MtrunA17_Chr8g0369311 34.211 114 66 3 8 117 60 168 9.10e-16 73.6
Msa1175200 MtrunA17_Chr1g0154011 34.211 114 66 3 8 117 4 112 5.15e-15 70.1
Msa1175200 MtrunA17_Chr3g0108261 32.456 114 68 3 8 117 4 112 7.31e-15 69.7
Msa1175200 MtrunA17_Chr5g0432831 32.456 114 68 3 8 117 4 112 7.94e-15 69.7
Msa1175200 MtrunA17_Chr7g0275361 32.456 114 68 3 8 117 4 112 1.21e-14 69.3
Msa1175200 MtrunA17_Chr4g0037011 31.579 114 69 3 8 117 4 112 1.72e-14 68.6
Msa1175200 MtrunA17_Chr8g0362321 31.250 112 68 3 8 115 7 113 5.22e-14 67.4
Msa1175200 MtrunA17_Chr4g0060351 31.250 112 68 3 8 115 7 113 8.62e-14 67.0
Msa1175200 MtrunA17_Chr8g0378601 29.661 118 66 3 8 117 25 133 1.44e-12 63.9
Msa1175200 MtrunA17_Chr3g0139901 30.579 121 70 5 4 116 2 116 2.41e-11 60.5
Msa1175200 MtrunA17_Chr5g0396451 33.621 116 68 3 4 115 31 141 3.24e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175200 AT1G17280.9 75.510 245 52 3 1 245 1 237 2.64e-136 383
Msa1175200 AT1G17280.7 75.510 245 52 3 1 245 1 237 2.64e-136 383
Msa1175200 AT1G17280.6 75.510 245 52 3 1 245 1 237 2.64e-136 383
Msa1175200 AT1G17280.2 75.510 245 52 3 1 245 1 237 2.64e-136 383
Msa1175200 AT1G17280.5 75.510 245 52 3 1 245 1 237 2.64e-136 383
Msa1175200 AT1G17280.3 75.510 245 52 3 1 245 1 237 2.64e-136 383
Msa1175200 AT1G17280.1 75.510 245 52 3 1 245 1 237 2.64e-136 383
Msa1175200 AT1G17280.8 75.510 245 52 3 1 245 1 237 2.64e-136 383
Msa1175200 AT5G50430.1 72.691 249 58 3 1 245 1 243 6.01e-134 377
Msa1175200 AT5G50430.2 72.691 249 58 3 1 245 1 243 6.01e-134 377
Msa1175200 AT1G17280.4 73.705 251 52 4 1 245 1 243 1.16e-133 377
Msa1175200 AT5G50430.3 67.470 249 58 4 1 245 1 230 5.29e-119 339
Msa1175200 AT3G17000.1 40.426 141 76 2 6 144 12 146 5.48e-33 122
Msa1175200 AT5G56150.1 34.211 114 66 3 8 117 4 112 5.00e-16 73.2
Msa1175200 AT3G08690.2 34.211 114 66 3 8 117 4 112 3.42e-15 70.9
Msa1175200 AT3G08690.1 34.211 114 66 3 8 117 4 112 3.42e-15 70.9
Msa1175200 AT5G56150.2 34.513 113 64 4 8 116 4 110 4.51e-15 69.7
Msa1175200 AT4G27960.1 33.333 114 67 3 8 117 4 112 5.55e-15 70.5
Msa1175200 AT1G64230.2 33.333 114 67 3 8 117 4 112 6.75e-15 70.1
Msa1175200 AT1G64230.1 33.333 114 67 3 8 117 4 112 6.75e-15 70.1
Msa1175200 AT5G41700.5 33.333 114 67 3 8 117 4 112 1.02e-14 69.7
Msa1175200 AT5G41700.2 33.333 114 67 3 8 117 4 112 1.02e-14 69.7
Msa1175200 AT5G41700.1 33.333 114 67 3 8 117 4 112 1.02e-14 69.7
Msa1175200 AT4G27960.2 33.333 114 67 3 8 117 34 142 1.29e-14 70.1
Msa1175200 AT5G41700.4 34.783 115 65 4 8 117 4 113 1.97e-14 68.9
Msa1175200 AT5G53300.2 32.456 114 68 3 8 117 4 112 2.12e-14 68.9
Msa1175200 AT5G53300.4 32.456 114 68 3 8 117 4 112 2.12e-14 68.9
Msa1175200 AT5G53300.1 32.456 114 68 3 8 117 4 112 2.12e-14 68.9
Msa1175200 AT2G02760.1 31.250 112 68 3 8 115 7 113 6.37e-14 67.8
Msa1175200 AT2G02760.2 31.250 112 68 3 8 115 7 113 6.37e-14 67.8
Msa1175200 AT2G02760.4 31.250 112 68 3 8 115 7 113 6.37e-14 67.8
Msa1175200 AT2G02760.3 31.250 112 68 3 8 115 7 113 6.37e-14 67.8
Msa1175200 AT1G14400.1 31.250 112 68 3 8 115 7 113 6.78e-14 67.8
Msa1175200 AT1G14400.2 31.250 112 68 3 8 115 7 113 6.78e-14 67.8
Msa1175200 AT2G16740.1 30.702 114 70 3 8 117 4 112 2.63e-13 65.9
Msa1175200 AT5G41700.3 33.654 104 60 3 8 107 4 102 3.50e-13 65.5
Msa1175200 AT1G64230.5 29.915 117 69 4 5 117 47 154 1.16e-12 65.1
Msa1175200 AT1G64230.4 29.915 117 69 4 5 117 47 154 1.16e-12 65.1
Msa1175200 AT5G62540.1 31.250 112 68 3 8 115 7 113 1.65e-12 63.9
Msa1175200 AT5G53300.3 32.692 104 61 3 8 107 4 102 2.14e-12 62.4
Msa1175200 AT1G36340.2 30.841 107 68 3 3 107 6 108 2.92e-12 63.2
Msa1175200 AT1G36340.1 30.841 107 68 3 3 107 6 108 2.92e-12 63.2
Msa1175200 AT1G64230.3 31.148 122 66 4 8 116 4 120 4.19e-12 62.8
Msa1175200 AT3G08700.2 31.579 114 68 4 8 116 4 112 5.04e-12 62.4
Msa1175200 AT3G08700.1 31.579 114 68 4 8 116 4 112 5.04e-12 62.4

Find 92 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACATTGGATTCCAACTTTC+AGG 0.160053 8_1:-6500959 None:intergenic
TTATTACTCTTCTCCATCTT+TGG 0.164344 8_1:+6502221 Msa1175200:CDS
TCTCTTAAACGCCGCCGTTT+TGG 0.209526 8_1:+6497738 Msa1175200:five_prime_UTR
CTCCATCTTTGGGGTTGTTA+TGG 0.233457 8_1:+6502232 Msa1175200:CDS
GTGAAGGACGGGCCACAATA+TGG 0.237187 8_1:-6500124 None:intergenic
TATTACTCTTCTCCATCTTT+GGG 0.241159 8_1:+6502222 Msa1175200:CDS
AAAAGCGGTAAATTACATTA+TGG 0.269229 8_1:-6502699 None:intergenic
CTGATTCCAGGAGGTTTATA+AGG 0.284681 8_1:-6500686 None:intergenic
AGGATTTGTATAGGAAATAT+TGG 0.289528 8_1:+6502361 Msa1175200:three_prime_UTR
TAAAAGTCCGAGGTCTGTTT+TGG 0.291867 8_1:+6502100 Msa1175200:CDS
TTCCTTGCAGTGCAACATTC+AGG 0.294415 8_1:+6501982 Msa1175200:intron
GATCCGATTTCCCCAAATAT+TGG 0.331926 8_1:-6497833 None:intergenic
TATGAATGCAGCATACTTAC+CGG 0.344644 8_1:+6501161 Msa1175200:intron
CCACCAATATTTGGGGAAAT+CGG 0.346930 8_1:+6497830 Msa1175200:five_prime_UTR
TACCGGGCTTCTTTCATTCA+TGG 0.353871 8_1:+6501178 Msa1175200:CDS
TGGTTCTTTATGTTCTGCTT+AGG 0.354652 8_1:+6502322 Msa1175200:three_prime_UTR
TGTAGCATGACAACACCTAA+TGG 0.360595 8_1:+6500790 Msa1175200:intron
TGGGTACAAGGGTCCATAAA+AGG 0.372988 8_1:+6502286 Msa1175200:three_prime_UTR
CTTATAAACCTCCTGGAATC+AGG 0.389083 8_1:+6500687 Msa1175200:CDS
AAGTATCAATACCAAGAAAC+TGG 0.417883 8_1:-6502437 None:intergenic
CCACAGGAGAAGACTTGAAA+AGG 0.427561 8_1:+6502138 Msa1175200:CDS
ACAAGAAGGCACCTGATTCC+AGG 0.429061 8_1:-6500698 None:intergenic
TAAAAGGATTATCATGGAAC+TGG 0.431498 8_1:+6502302 Msa1175200:three_prime_UTR
CGGGCCACAATATGGGAAAC+TGG 0.431636 8_1:-6500116 None:intergenic
GTTGTACTTCTCCACGTACT+CGG 0.441817 8_1:-6502015 None:intergenic
TGTGTCATGAACCGCCCATT+AGG 0.446261 8_1:-6500805 None:intergenic
GAAGACTTGAAAAGGGTTGA+GGG 0.448975 8_1:+6502146 Msa1175200:CDS
AGCGAGGGAACACCTTTCTC+AGG 0.450214 8_1:+6500491 Msa1175200:CDS
TTGTACTTCTCCACGTACTC+GGG 0.458106 8_1:-6502014 None:intergenic
ATTTGGGGAAATCGGATCTC+AGG 0.461390 8_1:+6497838 Msa1175200:five_prime_UTR
TTGCAGTTCATCCTGAAAGT+TGG 0.464526 8_1:+6500948 Msa1175200:intron
GAAAAGGGTTGAGGGATTGA+AGG 0.471212 8_1:+6502154 Msa1175200:CDS
AAACATACTGCAAATGATGC+TGG 0.474451 8_1:+6502525 Msa1175200:three_prime_UTR
GAATATCCTTATAAACCTCC+TGG 0.476050 8_1:+6500680 Msa1175200:CDS
ATGTCTAACAGGATTTGTAT+AGG 0.477090 8_1:+6502352 Msa1175200:three_prime_UTR
GTAGCATGACAACACCTAAT+GGG 0.487721 8_1:+6500791 Msa1175200:intron
TGCCATAACAACCCCAAAGA+TGG 0.488741 8_1:-6502234 None:intergenic
GGTCCATAAAAGGATTATCA+TGG 0.489985 8_1:+6502296 Msa1175200:three_prime_UTR
TGAAGGACGGGCCACAATAT+GGG 0.495022 8_1:-6500123 None:intergenic
AGAAGACTTGAAAAGGGTTG+AGG 0.497193 8_1:+6502145 Msa1175200:CDS
TCATATCTCAGATTACGTAT+TGG 0.507101 8_1:+6500463 Msa1175200:intron
GGAGCCAGTTTCCCATATTG+TGG 0.524830 8_1:+6500112 Msa1175200:intron
TACACTGCCAGTGGTTGGAC+TGG 0.524839 8_1:-6501832 None:intergenic
AGTAATAACATCATCCAGGT+TGG 0.531733 8_1:-6502206 None:intergenic
CGCCACTCAAGAATATCACT+TGG 0.539408 8_1:-6500146 None:intergenic
CTTATTCTCTTACAATGTGG+AGG 0.541075 8_1:+6502476 Msa1175200:three_prime_UTR
GAAAACAAGGATTTCCAACC+TGG 0.547451 8_1:+6502192 Msa1175200:CDS
AACATACTGCAAATGATGCT+GGG 0.547656 8_1:+6502526 Msa1175200:three_prime_UTR
CCGATTTCCCCAAATATTGG+TGG 0.548448 8_1:-6497830 None:intergenic
ATGCATCAAGCGCCTTCAGA+AGG 0.549944 8_1:+6499654 Msa1175200:CDS
AATATCACTTGGTGAAGGAC+GGG 0.551464 8_1:-6500135 None:intergenic
ATCCAATGTGGTCTGTATCA+AGG 0.552283 8_1:+6500972 Msa1175200:CDS
ATTACTCTTCTCCATCTTTG+GGG 0.552481 8_1:+6502223 Msa1175200:CDS
GAATATCACTTGGTGAAGGA+CGG 0.560660 8_1:-6500136 None:intergenic
TAATTTGCTAAACCTGAGAA+AGG 0.560758 8_1:-6500503 None:intergenic
GAAGAGTAATAACATCATCC+AGG 0.567563 8_1:-6502210 None:intergenic
TACCATGAATGAAAGAAGCC+CGG 0.570761 8_1:-6501180 None:intergenic
CACAGGAGAAGACTTGAAAA+GGG 0.572298 8_1:+6502139 Msa1175200:CDS
GAAAACAATGTAGAGTCCAC+AGG 0.573857 8_1:+6502122 Msa1175200:CDS
CAGCCAACGTCATCAGAGAC+TGG 0.574761 8_1:+6502071 Msa1175200:CDS
AGCGAAAACAAATTCCAAAA+CGG 0.576110 8_1:-6497752 None:intergenic
TTGAGGGATTGAAGGATGCG+AGG 0.577968 8_1:+6502162 Msa1175200:CDS
GTGCTCTATACTCCTTCTGA+AGG 0.582054 8_1:-6499666 None:intergenic
ATGAATGCAGCATACTTACC+GGG 0.582437 8_1:+6501162 Msa1175200:intron
ATCTCAGATTACGTATTGGA+AGG 0.583968 8_1:+6500467 Msa1175200:intron
AAAATTCACAGCTGGAGTAG+AGG 0.587096 8_1:-6502260 None:intergenic
GTGTTTACACTGCCAGTGGT+TGG 0.587196 8_1:-6501837 None:intergenic
ACCTTAAACTACATTAAAAG+CGG 0.587833 8_1:-6502714 None:intergenic
GAAGATGTTCCCCGAGTACG+TGG 0.599484 8_1:+6502004 Msa1175200:CDS
TGTACTTCTCCACGTACTCG+GGG 0.603988 8_1:-6502013 None:intergenic
ATGGATACCAGTCCAACCAC+TGG 0.607472 8_1:+6501825 Msa1175200:CDS
TGTATAGGAAATATTGGACA+TGG 0.608377 8_1:+6502367 Msa1175200:three_prime_UTR
GACCTTGATACAGACCACAT+TGG 0.612471 8_1:-6500974 None:intergenic
TACGTATTGGAAGGAAGCGA+GGG 0.615267 8_1:+6500476 Msa1175200:CDS
GCGAGGAGAAACAGAAAACA+AGG 0.615922 8_1:+6502179 Msa1175200:CDS
ACTCTTATTCTCTTACAATG+TGG 0.623980 8_1:+6502473 Msa1175200:three_prime_UTR
TTACGTATTGGAAGGAAGCG+AGG 0.625291 8_1:+6500475 Msa1175200:CDS
GATTCAGAACAGAATCGAGA+AGG 0.631381 8_1:-6499611 None:intergenic
TCTGTTCTGAATCAGTCGAA+TGG 0.634992 8_1:+6499621 Msa1175200:exon
AGTAGTGTTTACACTGCCAG+TGG 0.639725 8_1:-6501841 None:intergenic
CACCAAGTGATATTCTTGAG+TGG 0.643937 8_1:+6500144 Msa1175200:CDS
AGTGTGGTTGGTCGTGAGTG+TGG 0.644699 8_1:+6502608 Msa1175200:three_prime_UTR
GTTCTGAATCAGTCGAATGG+CGG 0.661506 8_1:+6499624 Msa1175200:exon
TCAAGAATATCACTTGGTGA+AGG 0.663216 8_1:-6500140 None:intergenic
GGTTTATAAGGATATTCCTG+AGG 0.670816 8_1:-6500674 None:intergenic
CTGAAAGTTGGAATCCAATG+TGG 0.673790 8_1:+6500960 Msa1175200:CDS
TGACCAGTCTCTGATGACGT+TGG 0.673844 8_1:-6502074 None:intergenic
GAAAACAAATTCCAAAACGG+CGG 0.699921 8_1:-6497749 None:intergenic
GCATGACAACACCTAATGGG+CGG 0.704176 8_1:+6500794 Msa1175200:intron
CTGGTCAAGATAAAAGTCCG+AGG 0.710589 8_1:+6502090 Msa1175200:CDS
AAGGGGCAAAATAATTAACG+CGG 0.712004 8_1:+6497790 Msa1175200:five_prime_UTR
AGAAGGCACCTGATTCCAGG+AGG 0.717165 8_1:-6500695 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGTTTTTTTTTATTTG+TGG + chr8_1:6497983-6498002 Msa1175200:intron 10.0%
!!! TTTAGTTTTTTTTTATTTGT+GGG + chr8_1:6497984-6498003 Msa1175200:intron 10.0%
!! AATAAATTGAAAATAGAATT+AGG - chr8_1:6499516-6499535 None:intergenic 10.0%
!!! TCACTATTTATTTTTATTTA+TGG + chr8_1:6499737-6499756 Msa1175200:intron 10.0%
!! GAAAAAATTAAAACATAAAA+GGG - chr8_1:6501039-6501058 None:intergenic 10.0%
!! AGAAAAAATTAAAACATAAA+AGG - chr8_1:6501040-6501059 None:intergenic 10.0%
!!! TAATTTTTTCTTTTGAAATT+TGG + chr8_1:6501049-6501068 Msa1175200:intron 10.0%
!!! TTAGTTTTTTTTTATTTGTG+GGG + chr8_1:6497985-6498004 Msa1175200:intron 15.0%
!!! TCTTTTTTATTATTTGATTG+TGG + chr8_1:6498021-6498040 Msa1175200:intron 15.0%
!!! AAATTTTGGTTTTTGATTAA+TGG + chr8_1:6498044-6498063 Msa1175200:intron 15.0%
!! TGTTTAATATGTGAAATTTA+AGG + chr8_1:6498199-6498218 Msa1175200:intron 15.0%
!!! AATAATTTGACTTTATACAT+AGG + chr8_1:6498338-6498357 Msa1175200:intron 15.0%
!! ATGGATATTACTATTATTAT+AGG + chr8_1:6498624-6498643 Msa1175200:intron 15.0%
!!! TATTATTATAGGTTTTATGT+AGG + chr8_1:6498635-6498654 Msa1175200:intron 15.0%
!!! ACATTTTCCTTTATATTAAA+TGG - chr8_1:6501757-6501776 None:intergenic 15.0%
!!! TTATTTGATTGTGGAAATTT+TGG + chr8_1:6498030-6498049 Msa1175200:intron 20.0%
!! ATGATCCAAACAAAAAATTA+GGG - chr8_1:6498148-6498167 None:intergenic 20.0%
!! ATAACTAAAATATAGTACAG+AGG - chr8_1:6498276-6498295 None:intergenic 20.0%
!! ATTATAAAACTTACTAACCT+AGG - chr8_1:6498446-6498465 None:intergenic 20.0%
!!! AATATTTTAAGGTAGTCATT+TGG + chr8_1:6498679-6498698 Msa1175200:intron 20.0%
!! AAGAAAATTCATGAATTATG+TGG - chr8_1:6498984-6499003 None:intergenic 20.0%
!!! ACTGTCATAGTTTTAATATT+GGG - chr8_1:6499384-6499403 None:intergenic 20.0%
!!! AACTGTCATAGTTTTAATAT+TGG - chr8_1:6499385-6499404 None:intergenic 20.0%
!! TTCAAATATTATGATGATCT+AGG - chr8_1:6500047-6500066 None:intergenic 20.0%
!!! AATTTTATTACTGTATTTGC+AGG + chr8_1:6500091-6500110 Msa1175200:intron 20.0%
!!! CATTATAAAAAGTATGAACT+TGG - chr8_1:6500772-6500791 None:intergenic 20.0%
!! AAATTAAACTGTAGCAATAT+GGG - chr8_1:6500908-6500927 None:intergenic 20.0%
!! AAAATTAAACTGTAGCAATA+TGG - chr8_1:6500909-6500928 None:intergenic 20.0%
!!! TTTTTATGAAAAACCCTTTT+CGG - chr8_1:6501535-6501554 None:intergenic 20.0%
!!! AAGGGTTTTTCATAAAAAAA+TGG + chr8_1:6501537-6501556 Msa1175200:intron 20.0%
!!! TAAGAGTTTTTAAAATAGTG+TGG + chr8_1:6502592-6502611 Msa1175200:three_prime_UTR 20.0%
!!! TTAATTATTTTGCCCCTTTT+TGG - chr8_1:6497788-6497807 None:intergenic 25.0%
!!! ATTTTTTGCCACCAATATTT+GGG + chr8_1:6497822-6497841 Msa1175200:five_prime_UTR 25.0%
! AAACCTTGAATTATCGAATT+GGG - chr8_1:6497895-6497914 None:intergenic 25.0%
! ACAAATCAGAGAAAAAGAAA+GGG - chr8_1:6497918-6497937 None:intergenic 25.0%
! TACAAATCAGAGAAAAAGAA+AGG - chr8_1:6497919-6497938 None:intergenic 25.0%
!!! TAATGGATCATTGTTGATTT+TGG + chr8_1:6498061-6498080 Msa1175200:intron 25.0%
! CATGATCCAAACAAAAAATT+AGG - chr8_1:6498149-6498168 None:intergenic 25.0%
! ATATGTGAAATTTAAGGAAG+AGG + chr8_1:6498205-6498224 Msa1175200:intron 25.0%
!!! CATAAGTAGTTTTATGCTTT+AGG + chr8_1:6498489-6498508 Msa1175200:intron 25.0%
!! GTGGTTACTCAAATATTTTA+AGG + chr8_1:6498668-6498687 Msa1175200:intron 25.0%
! AATTATGTGGTATGAAATCA+GGG - chr8_1:6498971-6498990 None:intergenic 25.0%
!!! TACTCCATTTTTCTTCATTA+TGG + chr8_1:6499264-6499283 Msa1175200:intron 25.0%
! AGTACCATAATGAAGAAAAA+TGG - chr8_1:6499271-6499290 None:intergenic 25.0%
!! ATTTTTCTTCATTATGGTAC+TGG + chr8_1:6499270-6499289 Msa1175200:intron 25.0%
! ATAAGAGCTATAGTAGAATA+AGG - chr8_1:6499343-6499362 None:intergenic 25.0%
! TAAGAGTAAACTAAAAAAGG+CGG - chr8_1:6499453-6499472 None:intergenic 25.0%
! TGCTACAAACCAAAAATAAT+GGG - chr8_1:6499477-6499496 None:intergenic 25.0%
! ATGCTACAAACCAAAAATAA+TGG - chr8_1:6499478-6499497 None:intergenic 25.0%
! ATAAATACACAAGAATAGAG+AGG - chr8_1:6499826-6499845 None:intergenic 25.0%
! TTCTTGTGTATTTATGTATC+TGG + chr8_1:6499831-6499850 Msa1175200:intron 25.0%
! TCTTGTGTATTTATGTATCT+GGG + chr8_1:6499832-6499851 Msa1175200:intron 25.0%
!!! TAGTATTTTGATGTTGTTTG+TGG + chr8_1:6499857-6499876 Msa1175200:intron 25.0%
! TCATGCTATAAACATTTCAT+CGG - chr8_1:6499883-6499902 None:intergenic 25.0%
! CTGAATAATTGTTTCATGAT+TGG + chr8_1:6499967-6499986 Msa1175200:intron 25.0%
!! TAATTGTTTCATGATTGGTT+AGG + chr8_1:6499972-6499991 Msa1175200:intron 25.0%
!! AAGCTCTAATATCCAAAAAT+GGG + chr8_1:6500214-6500233 Msa1175200:intron 25.0%
!! ATATTCTGTTTTCCCATTTT+TGG - chr8_1:6500229-6500248 None:intergenic 25.0%
! AACAGAATATGTTGAATCTT+TGG + chr8_1:6500239-6500258 Msa1175200:intron 25.0%
! CTGACAATATAGTAGTATTA+AGG - chr8_1:6500350-6500369 None:intergenic 25.0%
!! GTAATTTATTTGTTAGCTAG+TGG + chr8_1:6500410-6500429 Msa1175200:intron 25.0%
! AGTTGAGATAGTAATAAACT+GGG - chr8_1:6500591-6500610 None:intergenic 25.0%
! AAGTTGAGATAGTAATAAAC+TGG - chr8_1:6500592-6500611 None:intergenic 25.0%
!!! TTTTTAGGTGGATATTACTA+TGG + chr8_1:6500638-6500657 Msa1175200:intron 25.0%
!!! CTACAGTTTAATTTTTCTGT+GGG + chr8_1:6500914-6500933 Msa1175200:intron 25.0%
!!! TACAGTTTAATTTTTCTGTG+GGG + chr8_1:6500915-6500934 Msa1175200:intron 25.0%
!!! AGTTTTGAAGTTCTTTTATG+TGG + chr8_1:6501007-6501026 Msa1175200:intron 25.0%
! CATGGTATGTTATTATGTTA+TGG + chr8_1:6501196-6501215 Msa1175200:intron 25.0%
! TTCATATTCTAATTGAACTC+TGG + chr8_1:6501223-6501242 Msa1175200:intron 25.0%
! TTTGTTTGCTCATAAGATAT+TGG + chr8_1:6501267-6501286 Msa1175200:intron 25.0%
! TTGTTTGCTCATAAGATATT+GGG + chr8_1:6501268-6501287 Msa1175200:intron 25.0%
!! AAAAAGAGTGATTTTCCTTA+TGG - chr8_1:6501368-6501387 None:intergenic 25.0%
!! TAAAATTGTTGTTCCGAAAA+GGG + chr8_1:6501519-6501538 Msa1175200:intron 25.0%
! TATACTTGTACGCATAATAA+TGG + chr8_1:6501661-6501680 Msa1175200:intron 25.0%
! TGTTGAGCCATTTAATATAA+AGG + chr8_1:6501747-6501766 Msa1175200:intron 25.0%
!!! TGAATTTTTTATGGGTACAA+GGG + chr8_1:6502275-6502294 Msa1175200:exon 25.0%
! AGGATTTGTATAGGAAATAT+TGG + chr8_1:6502361-6502380 Msa1175200:three_prime_UTR 25.0%
!!! CTGCATTTTATATTCTAGAA+TGG + chr8_1:6502556-6502575 Msa1175200:three_prime_UTR 25.0%
!!! AGTTTTTAAAATAGTGTGGT+TGG + chr8_1:6502596-6502615 Msa1175200:three_prime_UTR 25.0%
! AAAAGCGGTAAATTACATTA+TGG - chr8_1:6502702-6502721 None:intergenic 25.0%
! ACCTTAAACTACATTAAAAG+CGG - chr8_1:6502717-6502736 None:intergenic 25.0%
AGCGAAAACAAATTCCAAAA+CGG - chr8_1:6497755-6497774 None:intergenic 30.0%
!!! GATTTTTTGCCACCAATATT+TGG + chr8_1:6497821-6497840 Msa1175200:five_prime_UTR 30.0%
!!! TTTTTTGCCACCAATATTTG+GGG + chr8_1:6497823-6497842 Msa1175200:five_prime_UTR 30.0%
GAAACCTTGAATTATCGAAT+TGG - chr8_1:6497896-6497915 None:intergenic 30.0%
!! GGTAAGGTAAATTGATTTTG+GGG - chr8_1:6498127-6498146 None:intergenic 30.0%
!! GGGTAAGGTAAATTGATTTT+GGG - chr8_1:6498128-6498147 None:intergenic 30.0%
!! AGGGTAAGGTAAATTGATTT+TGG - chr8_1:6498129-6498148 None:intergenic 30.0%
CCAAACAAAAAATTAGGGTA+AGG - chr8_1:6498143-6498162 None:intergenic 30.0%
!!! CCTTACCCTAATTTTTTGTT+TGG + chr8_1:6498140-6498159 Msa1175200:intron 30.0%
ATGTGAATTGCTTGAGTAAT+AGG + chr8_1:6498175-6498194 Msa1175200:intron 30.0%
! ACTTTGAAAGGGATAATTCA+AGG + chr8_1:6498231-6498250 Msa1175200:intron 30.0%
! CTTTGAAAGGGATAATTCAA+GGG + chr8_1:6498232-6498251 Msa1175200:intron 30.0%
ATTTGAGAGATGAGTGAATT+TGG + chr8_1:6498365-6498384 Msa1175200:intron 30.0%
GTATCTCAGAACATATTCAT+GGG + chr8_1:6498511-6498530 Msa1175200:intron 30.0%
AGAACATATTCATGGGAAAT+TGG + chr8_1:6498518-6498537 Msa1175200:intron 30.0%
TAACTCTCTATGAACATGAT+AGG + chr8_1:6498597-6498616 Msa1175200:intron 30.0%
TATGAACATGATAGGTTTGA+TGG + chr8_1:6498605-6498624 Msa1175200:intron 30.0%
AGAGTTTGTGAAATTTGAAG+AGG - chr8_1:6498787-6498806 None:intergenic 30.0%
TGATTTACATACAGTTGTGT+TGG + chr8_1:6498823-6498842 Msa1175200:intron 30.0%
ATTATGTGGTATGAAATCAG+GGG - chr8_1:6498970-6498989 None:intergenic 30.0%
GAATTATGTGGTATGAAATC+AGG - chr8_1:6498972-6498991 None:intergenic 30.0%
GAATTAGGATCGACATTATT+GGG - chr8_1:6499024-6499043 None:intergenic 30.0%
GAATTAGGATCGACATTATT+GGG - chr8_1:6499024-6499043 None:intergenic 30.0%
! TGTGTTGTGATATTTTACAG+AGG + chr8_1:6499301-6499320 Msa1175200:intron 30.0%
CTCTTATTAATTCAATGCTG+TGG + chr8_1:6499356-6499375 Msa1175200:intron 30.0%
GGGTAAGAGTAAACTAAAAA+AGG - chr8_1:6499456-6499475 None:intergenic 30.0%
! TACTCTTACCCCATTATTTT+TGG + chr8_1:6499465-6499484 Msa1175200:intron 30.0%
GCTACAAACCAAAAATAATG+GGG - chr8_1:6499476-6499495 None:intergenic 30.0%
! TAGTGAAGAGCAATTTTTGT+CGG - chr8_1:6499723-6499742 None:intergenic 30.0%
ATGTTTATAGCATGAATGAC+TGG + chr8_1:6499888-6499907 Msa1175200:intron 30.0%
TGTTTATAGCATGAATGACT+GGG + chr8_1:6499889-6499908 Msa1175200:intron 30.0%
AGGAGAAAGGAAACATATAT+AGG - chr8_1:6499925-6499944 None:intergenic 30.0%
ACTATAGACACACTATTAAG+AGG - chr8_1:6499945-6499964 None:intergenic 30.0%
! CAAGCTCTAATATCCAAAAA+TGG + chr8_1:6500213-6500232 Msa1175200:intron 30.0%
ATACTACTATATTGTCAGCA+AGG + chr8_1:6500352-6500371 Msa1175200:intron 30.0%
TCATATCTCAGATTACGTAT+TGG + chr8_1:6500463-6500482 Msa1175200:intron 30.0%
!! TAATTTGCTAAACCTGAGAA+AGG - chr8_1:6500506-6500525 None:intergenic 30.0%
!!! ACGTTTTTTGTTCGCTTTTT+AGG + chr8_1:6500623-6500642 Msa1175200:intron 30.0%
!!! TTTTTTGTTCGCTTTTTAGG+TGG + chr8_1:6500626-6500645 Msa1175200:intron 30.0%
! TTGTAAGTTCTTTTACCCAT+TGG + chr8_1:6500855-6500874 Msa1175200:intron 30.0%
TGGGTAACTATGATACAAAT+CGG - chr8_1:6500889-6500908 None:intergenic 30.0%
!! GCTACAGTTTAATTTTTCTG+TGG + chr8_1:6500913-6500932 Msa1175200:intron 30.0%
AGTATGCTGCATTCATAAAT+TGG - chr8_1:6501158-6501177 None:intergenic 30.0%
! TTTTGCGTTTGTTTACCATA+AGG + chr8_1:6501350-6501369 Msa1175200:intron 30.0%
!! CTCTTTGAAATCATTGTTGA+TGG - chr8_1:6501402-6501421 None:intergenic 30.0%
! CTTTTCGGAACAACAATTTT+AGG - chr8_1:6501520-6501539 None:intergenic 30.0%
! CTAAAATTGTTGTTCCGAAA+AGG + chr8_1:6501518-6501537 Msa1175200:intron 30.0%
GTATACAACAAAGACTACTA+TGG - chr8_1:6501646-6501665 None:intergenic 30.0%
GATTTGTGTTCCACAATTAA+TGG + chr8_1:6501955-6501974 Msa1175200:intron 30.0%
TTATTACTCTTCTCCATCTT+TGG + chr8_1:6502221-6502240 Msa1175200:CDS 30.0%
TATTACTCTTCTCCATCTTT+GGG + chr8_1:6502222-6502241 Msa1175200:CDS 30.0%
!!! TCCAGCTGTGAATTTTTTAT+GGG + chr8_1:6502267-6502286 Msa1175200:exon 30.0%
!!! GTGAATTTTTTATGGGTACA+AGG + chr8_1:6502274-6502293 Msa1175200:exon 30.0%
! GTTCCATGATAATCCTTTTA+TGG - chr8_1:6502302-6502321 None:intergenic 30.0%
TAAAAGGATTATCATGGAAC+TGG + chr8_1:6502302-6502321 Msa1175200:three_prime_UTR 30.0%
ATGTCTAACAGGATTTGTAT+AGG + chr8_1:6502352-6502371 Msa1175200:three_prime_UTR 30.0%
TGTATAGGAAATATTGGACA+TGG + chr8_1:6502367-6502386 Msa1175200:three_prime_UTR 30.0%
AAGTATCAATACCAAGAAAC+TGG - chr8_1:6502440-6502459 None:intergenic 30.0%
ACTCTTATTCTCTTACAATG+TGG + chr8_1:6502473-6502492 Msa1175200:three_prime_UTR 30.0%
!! ACCGCTTTTAATGTAGTTTA+AGG + chr8_1:6502713-6502732 Msa1175200:three_prime_UTR 30.0%
GAAAACAAATTCCAAAACGG+CGG - chr8_1:6497752-6497771 None:intergenic 35.0%
!! GCTGTTTCGTTTTCCAAAAA+GGG + chr8_1:6497772-6497791 Msa1175200:five_prime_UTR 35.0%
! CTGTTTCGTTTTCCAAAAAG+GGG + chr8_1:6497773-6497792 Msa1175200:five_prime_UTR 35.0%
AAGGGGCAAAATAATTAACG+CGG + chr8_1:6497790-6497809 Msa1175200:five_prime_UTR 35.0%
GGTGAAAGAAAGAAGAAAAG+GGG - chr8_1:6497874-6497893 None:intergenic 35.0%
GGGTGAAAGAAAGAAGAAAA+GGG - chr8_1:6497875-6497894 None:intergenic 35.0%
TGGGTGAAAGAAAGAAGAAA+AGG - chr8_1:6497876-6497895 None:intergenic 35.0%
TCACCCAATTCGATAATTCA+AGG + chr8_1:6497889-6497908 Msa1175200:intron 35.0%
!!! ATTGTTGATTTTGGAATCCG+TGG + chr8_1:6498070-6498089 Msa1175200:intron 35.0%
AGGAAGAGGATAACTTTGAA+AGG + chr8_1:6498219-6498238 Msa1175200:intron 35.0%
! GGAAGAGGATAACTTTGAAA+GGG + chr8_1:6498220-6498239 Msa1175200:intron 35.0%
GGTATCTCAGAACATATTCA+TGG + chr8_1:6498510-6498529 Msa1175200:intron 35.0%
ACATATTCATGGGAAATTGG+TGG + chr8_1:6498521-6498540 Msa1175200:intron 35.0%
TTATGTAGGCATCTGAATTG+TGG + chr8_1:6498649-6498668 Msa1175200:intron 35.0%
ATTTGGTCCATGTCTTTCAT+GGG + chr8_1:6498696-6498715 Msa1175200:intron 35.0%
TACAAATCCCATGAAAGACA+TGG - chr8_1:6498706-6498725 None:intergenic 35.0%
GTGTCGTGTCTTATAACATT+TGG + chr8_1:6498739-6498758 Msa1175200:intron 35.0%
!!! CATTTGGACAGCTTTTTTCA+TGG + chr8_1:6498755-6498774 Msa1175200:intron 35.0%
AGTCACTTGACTATCTCAAA+TGG - chr8_1:6498944-6498963 None:intergenic 35.0%
ATCGACATTATTGGGTATAG+AGG - chr8_1:6499016-6499035 None:intergenic 35.0%
CGAATTAGGATCGACATTAT+TGG - chr8_1:6499025-6499044 None:intergenic 35.0%
CGAATTAGGATCGACATTAT+TGG - chr8_1:6499025-6499044 None:intergenic 35.0%
AGAGCTATAGTAGAATAAGG+AGG - chr8_1:6499340-6499359 None:intergenic 35.0%
CTGCACAACAAAATAAGCAT+TGG - chr8_1:6499765-6499784 None:intergenic 35.0%
!! TTAGCTTGTTCTGTGATCAT+TGG + chr8_1:6499793-6499812 Msa1175200:intron 35.0%
ACACACTATTAAGAGGAGAA+AGG - chr8_1:6499938-6499957 None:intergenic 35.0%
ATGATCTAGGCAATTGATAC+AGG - chr8_1:6500034-6500053 None:intergenic 35.0%
! TCAAGAATATCACTTGGTGA+AGG - chr8_1:6500143-6500162 None:intergenic 35.0%
TACTATATTGTCAGCAAGGA+AGG + chr8_1:6500356-6500375 Msa1175200:intron 35.0%
ATCTCAGATTACGTATTGGA+AGG + chr8_1:6500467-6500486 Msa1175200:intron 35.0%
GATAGTAATAAACTGGGTGT+TGG - chr8_1:6500585-6500604 None:intergenic 35.0%
TGGAAAAATCAAGTTTCCTC+AGG + chr8_1:6500658-6500677 Msa1175200:CDS 35.0%
GGTTTATAAGGATATTCCTG+AGG - chr8_1:6500677-6500696 None:intergenic 35.0%
GAATATCCTTATAAACCTCC+TGG + chr8_1:6500680-6500699 Msa1175200:CDS 35.0%
!! AAATCGGTTTGTCTTCCAAT+GGG - chr8_1:6500873-6500892 None:intergenic 35.0%
TTGGTTGTATTGTTTGCACT+AGG + chr8_1:6501068-6501087 Msa1175200:intron 35.0%
TGGTTGTATTGTTTGCACTA+GGG + chr8_1:6501069-6501088 Msa1175200:intron 35.0%
TATGAATGCAGCATACTTAC+CGG + chr8_1:6501161-6501180 Msa1175200:intron 35.0%
CAAACAAATGCCATATGAGA+TGG - chr8_1:6501255-6501274 None:intergenic 35.0%
AAGGAAAGAGCCATTAATTG+TGG - chr8_1:6501968-6501987 None:intergenic 35.0%
! TTGTTTTCCAAAACAGACCT+CGG - chr8_1:6502110-6502129 None:intergenic 35.0%
AGTAATAACATCATCCAGGT+TGG - chr8_1:6502209-6502228 None:intergenic 35.0%
GAAGAGTAATAACATCATCC+AGG - chr8_1:6502213-6502232 None:intergenic 35.0%
ATTACTCTTCTCCATCTTTG+GGG + chr8_1:6502223-6502242 Msa1175200:CDS 35.0%
!!! CTCCAGCTGTGAATTTTTTA+TGG + chr8_1:6502266-6502285 Msa1175200:exon 35.0%
ACCCATAAAAAATTCACAGC+TGG - chr8_1:6502271-6502290 None:intergenic 35.0%
GGTCCATAAAAGGATTATCA+TGG + chr8_1:6502296-6502315 Msa1175200:three_prime_UTR 35.0%
TGGTTCTTTATGTTCTGCTT+AGG + chr8_1:6502322-6502341 Msa1175200:three_prime_UTR 35.0%
!! TAGGTTTTGTCATGTCTAAC+AGG + chr8_1:6502341-6502360 Msa1175200:three_prime_UTR 35.0%
CTTATTCTCTTACAATGTGG+AGG + chr8_1:6502476-6502495 Msa1175200:three_prime_UTR 35.0%
!! GGCTTGTTTTCTTTTAGTGT+TGG + chr8_1:6502497-6502516 Msa1175200:three_prime_UTR 35.0%
AAACATACTGCAAATGATGC+TGG + chr8_1:6502525-6502544 Msa1175200:three_prime_UTR 35.0%
AACATACTGCAAATGATGCT+GGG + chr8_1:6502526-6502545 Msa1175200:three_prime_UTR 35.0%
!! AGTCTAGAAGTGCGTTTTGT+AGG - chr8_1:6497702-6497721 None:intergenic 40.0%
CGTTTAAGAGAGAGAGAGTA+AGG - chr8_1:6497729-6497748 None:intergenic 40.0%
!! CGCTGTTTCGTTTTCCAAAA+AGG + chr8_1:6497771-6497790 Msa1175200:five_prime_UTR 40.0%
CCACCAATATTTGGGGAAAT+CGG + chr8_1:6497830-6497849 Msa1175200:five_prime_UTR 40.0%
GATCCGATTTCCCCAAATAT+TGG - chr8_1:6497836-6497855 None:intergenic 40.0%
GAAAGAAAGAAGAAAAGGGG+TGG - chr8_1:6497871-6497890 None:intergenic 40.0%
!!! TTGATTTTGGAATCCGTGGT+GGG + chr8_1:6498074-6498093 Msa1175200:intron 40.0%
AATTCCCATTATTCCCACCA+CGG - chr8_1:6498090-6498109 None:intergenic 40.0%
! TGGTGGGAATAATGGGAATT+TGG + chr8_1:6498090-6498109 Msa1175200:intron 40.0%
! GGTGGGAATAATGGGAATTT+GGG + chr8_1:6498091-6498110 Msa1175200:intron 40.0%
ATTCAAGGGAGAGAAACATG+AGG + chr8_1:6498246-6498265 Msa1175200:intron 40.0%
TGATGACTGTGAATCTGTGA+TGG + chr8_1:6498303-6498322 Msa1175200:intron 40.0%
GATGACTGTGAATCTGTGAT+GGG + chr8_1:6498304-6498323 Msa1175200:intron 40.0%
!!! TTTTGAAGCACTGACCATAG+AGG + chr8_1:6498568-6498587 Msa1175200:intron 40.0%
!! TTTGAAGCACTGACCATAGA+GGG + chr8_1:6498569-6498588 Msa1175200:intron 40.0%
CATTTGGTCCATGTCTTTCA+TGG + chr8_1:6498695-6498714 Msa1175200:intron 40.0%
GGATTTGTAGTTCCTTGTTG+AGG + chr8_1:6498717-6498736 Msa1175200:intron 40.0%
!! TGTGTTGGTTATGACTGAGT+TGG + chr8_1:6498838-6498857 Msa1175200:intron 40.0%
GATCCTAATTCGTACCATGA+TGG + chr8_1:6499033-6499052 Msa1175200:intron 40.0%
GATCCTAATTCGTACCATGA+TGG + chr8_1:6499033-6499052 Msa1175200:intron 40.0%
GTTCATAATCAATGCTGAGC+AGG + chr8_1:6499547-6499566 Msa1175200:intron 40.0%
GATTCAGAACAGAATCGAGA+AGG - chr8_1:6499614-6499633 None:intergenic 40.0%
! TCTGTTCTGAATCAGTCGAA+TGG + chr8_1:6499621-6499640 Msa1175200:exon 40.0%
CTACAGTGTGTACTTCACAA+AGG + chr8_1:6499995-6500014 Msa1175200:intron 40.0%
! AATATCACTTGGTGAAGGAC+GGG - chr8_1:6500138-6500157 None:intergenic 40.0%
! GAATATCACTTGGTGAAGGA+CGG - chr8_1:6500139-6500158 None:intergenic 40.0%
CACCAAGTGATATTCTTGAG+TGG + chr8_1:6500144-6500163 Msa1175200:CDS 40.0%
GTAAAACCCATATGACCAAC+TGG + chr8_1:6500282-6500301 Msa1175200:intron 40.0%
!! GCAAACCTTACTTTTGCTCT+CGG + chr8_1:6500315-6500334 Msa1175200:intron 40.0%
!! CAAACCTTACTTTTGCTCTC+GGG + chr8_1:6500316-6500335 Msa1175200:intron 40.0%
GTTTCAGCTGTATTGTGTGT+TGG + chr8_1:6500549-6500568 Msa1175200:intron 40.0%
CTGATTCCAGGAGGTTTATA+AGG - chr8_1:6500689-6500708 None:intergenic 40.0%
CTTATAAACCTCCTGGAATC+AGG + chr8_1:6500687-6500706 Msa1175200:CDS 40.0%
TCAAGAATGCTGCAACAAGA+AGG - chr8_1:6500715-6500734 None:intergenic 40.0%
TGTAGCATGACAACACCTAA+TGG + chr8_1:6500790-6500809 Msa1175200:intron 40.0%
GTAGCATGACAACACCTAAT+GGG + chr8_1:6500791-6500810 Msa1175200:intron 40.0%
!! CAAATCGGTTTGTCTTCCAA+TGG - chr8_1:6500874-6500893 None:intergenic 40.0%
TTGCAGTTCATCCTGAAAGT+TGG + chr8_1:6500948-6500967 Msa1175200:intron 40.0%
CACATTGGATTCCAACTTTC+AGG - chr8_1:6500962-6500981 None:intergenic 40.0%
CTGAAAGTTGGAATCCAATG+TGG + chr8_1:6500960-6500979 Msa1175200:CDS 40.0%
ATCCAATGTGGTCTGTATCA+AGG + chr8_1:6500972-6500991 Msa1175200:CDS 40.0%
GTATTGTTTGCACTAGGGAA+TGG + chr8_1:6501074-6501093 Msa1175200:intron 40.0%
ATGAATGCAGCATACTTACC+GGG + chr8_1:6501162-6501181 Msa1175200:intron 40.0%
TACCATGAATGAAAGAAGCC+CGG - chr8_1:6501183-6501202 None:intergenic 40.0%
CTGGTTTCTTCCATCTCATA+TGG + chr8_1:6501242-6501261 Msa1175200:intron 40.0%
GGCAAATGCAAGAGTGATAT+GGG - chr8_1:6501563-6501582 None:intergenic 40.0%
AGGCAAATGCAAGAGTGATA+TGG - chr8_1:6501564-6501583 None:intergenic 40.0%
! CTTGCATTTGCCTCTTTTAG+CGG + chr8_1:6501571-6501590 Msa1175200:intron 40.0%
! TGCCTCTTTTAGCGGTTTTT+TGG + chr8_1:6501579-6501598 Msa1175200:intron 40.0%
! GCCTCTTTTAGCGGTTTTTT+GGG + chr8_1:6501580-6501599 Msa1175200:intron 40.0%
ACCCAAAAAACCGCTAAAAG+AGG - chr8_1:6501584-6501603 None:intergenic 40.0%
!!! CTTTTAGCGGTTTTTTGGGT+AGG + chr8_1:6501584-6501603 Msa1175200:intron 40.0%
!!! GTTTTTTGGGTAGGTTGGTT+GGG + chr8_1:6501593-6501612 Msa1175200:intron 40.0%
AGCTTATGAACACCTACAAC+GGG - chr8_1:6501728-6501747 None:intergenic 40.0%
CAGCTTATGAACACCTACAA+CGG - chr8_1:6501729-6501748 None:intergenic 40.0%
! ACAGACTTCTCTTTTGCAGA+TGG + chr8_1:6501806-6501825 Msa1175200:intron 40.0%
!! ATTGCTCAATGTTGATGGTG+CGG - chr8_1:6501929-6501948 None:intergenic 40.0%
GAGACATTGCTCAATGTTGA+TGG - chr8_1:6501934-6501953 None:intergenic 40.0%
! TAAAAGTCCGAGGTCTGTTT+TGG + chr8_1:6502100-6502119 Msa1175200:CDS 40.0%
GAAAACAATGTAGAGTCCAC+AGG + chr8_1:6502122-6502141 Msa1175200:CDS 40.0%
CACAGGAGAAGACTTGAAAA+GGG + chr8_1:6502139-6502158 Msa1175200:CDS 40.0%
AGAAGACTTGAAAAGGGTTG+AGG + chr8_1:6502145-6502164 Msa1175200:CDS 40.0%
GAAGACTTGAAAAGGGTTGA+GGG + chr8_1:6502146-6502165 Msa1175200:CDS 40.0%
GAAAACAAGGATTTCCAACC+TGG + chr8_1:6502192-6502211 Msa1175200:CDS 40.0%
AAAATTCACAGCTGGAGTAG+AGG - chr8_1:6502263-6502282 None:intergenic 40.0%
!!! GTCTGTTTTTGCCAGTTTCT+TGG + chr8_1:6502426-6502445 Msa1175200:three_prime_UTR 40.0%
CCGATTTCCCCAAATATTGG+TGG - chr8_1:6497833-6497852 None:intergenic 45.0%
ATTTGGGGAAATCGGATCTC+AGG + chr8_1:6497838-6497857 Msa1175200:five_prime_UTR 45.0%
!!! GTTGATTTTGGAATCCGTGG+TGG + chr8_1:6498073-6498092 Msa1175200:intron 45.0%
! GAATCCGTGGTGGGAATAAT+GGG + chr8_1:6498083-6498102 Msa1175200:intron 45.0%
!! TGAGTGAATTTGGAGTGCTG+TGG + chr8_1:6498375-6498394 Msa1175200:intron 45.0%
!! TTTGGAGTGCTGTGGTTTGT+TGG + chr8_1:6498383-6498402 Msa1175200:intron 45.0%
TATGCAGTGAGAGTTGTCCT+AGG + chr8_1:6498426-6498445 Msa1175200:intron 45.0%
!! TTGAAGCACTGACCATAGAG+GGG + chr8_1:6498570-6498589 Msa1175200:intron 45.0%
GAGAGTTATGAACCCCTCTA+TGG - chr8_1:6498585-6498604 None:intergenic 45.0%
TAAGACACGACACCTCAACA+AGG - chr8_1:6498732-6498751 None:intergenic 45.0%
CAGCCATCATGGTACGAATT+AGG - chr8_1:6499039-6499058 None:intergenic 45.0%
TACTGATGACAGTTCACGTG+TGG + chr8_1:6499079-6499098 Msa1175200:intron 45.0%
ACTGATGACAGTTCACGTGT+GGG + chr8_1:6499080-6499099 Msa1175200:intron 45.0%
CAGCCATCATGGTACGAATT+AGG - chr8_1:6499039-6499058 None:intergenic 45.0%
TACTGATGACAGTTCACGTG+TGG + chr8_1:6499079-6499098 Msa1175200:intron 45.0%
ACTGATGACAGTTCACGTGT+GGG + chr8_1:6499080-6499099 Msa1175200:intron 45.0%
! GTTCTGAATCAGTCGAATGG+CGG + chr8_1:6499624-6499643 Msa1175200:exon 45.0%
GTGCTCTATACTCCTTCTGA+AGG - chr8_1:6499669-6499688 None:intergenic 45.0%
CAGTGTGTACTTCACAAAGG+TGG + chr8_1:6499998-6500017 Msa1175200:intron 45.0%
CGCCACTCAAGAATATCACT+TGG - chr8_1:6500149-6500168 None:intergenic 45.0%
TTGCGACCAGTTGGTCATAT+GGG - chr8_1:6500291-6500310 None:intergenic 45.0%
TTACGTATTGGAAGGAAGCG+AGG + chr8_1:6500475-6500494 Msa1175200:CDS 45.0%
TACGTATTGGAAGGAAGCGA+GGG + chr8_1:6500476-6500495 Msa1175200:CDS 45.0%
GACCTTGATACAGACCACAT+TGG - chr8_1:6500977-6500996 None:intergenic 45.0%
TACCGGGCTTCTTTCATTCA+TGG + chr8_1:6501178-6501197 Msa1175200:CDS 45.0%
!!! TAGCGGTTTTTTGGGTAGGT+TGG + chr8_1:6501588-6501607 Msa1175200:intron 45.0%
!!! GGTTTTTTGGGTAGGTTGGT+TGG + chr8_1:6501592-6501611 Msa1175200:intron 45.0%
CTTATGAACACCTACAACGG+GGG - chr8_1:6501726-6501745 None:intergenic 45.0%
GCTTATGAACACCTACAACG+GGG - chr8_1:6501727-6501746 None:intergenic 45.0%
AGTAGTGTTTACACTGCCAG+TGG - chr8_1:6501844-6501863 None:intergenic 45.0%
! TTTTGCTAGACGCTGCTTCT+CGG - chr8_1:6501871-6501890 None:intergenic 45.0%
TTCCTTGCAGTGCAACATTC+AGG + chr8_1:6501982-6502001 Msa1175200:intron 45.0%
TTCCTGAATGTTGCACTGCA+AGG - chr8_1:6501987-6502006 None:intergenic 45.0%
TTGTACTTCTCCACGTACTC+GGG - chr8_1:6502017-6502036 None:intergenic 45.0%
GTTGTACTTCTCCACGTACT+CGG - chr8_1:6502018-6502037 None:intergenic 45.0%
CTGGTCAAGATAAAAGTCCG+AGG + chr8_1:6502090-6502109 Msa1175200:CDS 45.0%
!!! CCTTTTCAAGTCTTCTCCTG+TGG - chr8_1:6502141-6502160 None:intergenic 45.0%
CCACAGGAGAAGACTTGAAA+AGG + chr8_1:6502138-6502157 Msa1175200:CDS 45.0%
GCGAGGAGAAACAGAAAACA+AGG + chr8_1:6502179-6502198 Msa1175200:CDS 45.0%
!! CTCCATCTTTGGGGTTGTTA+TGG + chr8_1:6502232-6502251 Msa1175200:CDS 45.0%
TGCCATAACAACCCCAAAGA+TGG - chr8_1:6502237-6502256 None:intergenic 45.0%
TGGGTACAAGGGTCCATAAA+AGG + chr8_1:6502286-6502305 Msa1175200:three_prime_UTR 45.0%
ACTGGCAAAAACAGACACGA+AGG - chr8_1:6502422-6502441 None:intergenic 45.0%
! TCTCTTAAACGCCGCCGTTT+TGG + chr8_1:6497738-6497757 Msa1175200:five_prime_UTR 50.0%
! GGAATCCGTGGTGGGAATAA+TGG + chr8_1:6498082-6498101 Msa1175200:intron 50.0%
ATGCATCAAGCGCCTTCAGA+AGG + chr8_1:6499654-6499673 Msa1175200:CDS 50.0%
GGAGCCAGTTTCCCATATTG+TGG + chr8_1:6500112-6500131 Msa1175200:intron 50.0%
TGAAGGACGGGCCACAATAT+GGG - chr8_1:6500126-6500145 None:intergenic 50.0%
GTTGCGACCAGTTGGTCATA+TGG - chr8_1:6500292-6500311 None:intergenic 50.0%
AGAGCCCGAGAGCAAAAGTA+AGG - chr8_1:6500323-6500342 None:intergenic 50.0%
!! ACAAGAAGGCACCTGATTCC+AGG - chr8_1:6500701-6500720 None:intergenic 50.0%
GCATGACAACACCTAATGGG+CGG + chr8_1:6500794-6500813 Msa1175200:intron 50.0%
TGTGTCATGAACCGCCCATT+AGG - chr8_1:6500808-6500827 None:intergenic 50.0%
!! TTTGGGTAGGTTGGTTGGGA+TGG + chr8_1:6501597-6501616 Msa1175200:intron 50.0%
!! TTGGGTAGGTTGGTTGGGAT+GGG + chr8_1:6501598-6501617 Msa1175200:intron 50.0%
TTGTTAAGCTCCCCCGTTGT+AGG + chr8_1:6501713-6501732 Msa1175200:intron 50.0%
ATGGATACCAGTCCAACCAC+TGG + chr8_1:6501825-6501844 Msa1175200:CDS 50.0%
GTGTTTACACTGCCAGTGGT+TGG - chr8_1:6501840-6501859 None:intergenic 50.0%
TGTACTTCTCCACGTACTCG+GGG - chr8_1:6502016-6502035 None:intergenic 50.0%
! TGACCAGTCTCTGATGACGT+TGG - chr8_1:6502077-6502096 None:intergenic 50.0%
ACACGTGTGAGCAGCCATCA+TGG - chr8_1:6499050-6499069 None:intergenic 55.0%
ACACGTGTGAGCAGCCATCA+TGG - chr8_1:6499050-6499069 None:intergenic 55.0%
CGGGCCACAATATGGGAAAC+TGG - chr8_1:6500119-6500138 None:intergenic 55.0%
GTGAAGGACGGGCCACAATA+TGG - chr8_1:6500127-6500146 None:intergenic 55.0%
TTTGCTGCGTTGCGACCAGT+TGG - chr8_1:6500300-6500319 None:intergenic 55.0%
AGCGAGGGAACACCTTTCTC+AGG + chr8_1:6500491-6500510 Msa1175200:CDS 55.0%
!! AGAAGGCACCTGATTCCAGG+AGG - chr8_1:6500698-6500717 None:intergenic 55.0%
!! GTAGGTTGGTTGGGATGGGA+GGG + chr8_1:6501602-6501621 Msa1175200:intron 55.0%
!! TAGGTTGGTTGGGATGGGAG+GGG + chr8_1:6501603-6501622 Msa1175200:intron 55.0%
TACACTGCCAGTGGTTGGAC+TGG - chr8_1:6501835-6501854 None:intergenic 55.0%
GAAGATGTTCCCCGAGTACG+TGG + chr8_1:6502004-6502023 Msa1175200:CDS 55.0%
CAGCCAACGTCATCAGAGAC+TGG + chr8_1:6502071-6502090 Msa1175200:CDS 55.0%
! AGTGTGGTTGGTCGTGAGTG+TGG + chr8_1:6502608-6502627 Msa1175200:three_prime_UTR 55.0%
!! GGTAGGTTGGTTGGGATGGG+AGG + chr8_1:6501601-6501620 Msa1175200:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 6497673 6502742 6497673 ID=Msa1175200;Name=Msa1175200
chr8_1 mRNA 6497673 6502742 6497673 ID=Msa1175200-mRNA-1;Parent=Msa1175200;Name=Msa1175200-mRNA-1;_AED=0.08;_eAED=0.08;_QI=258|0.88|0.9|1|0.88|0.8|10|465|245
chr8_1 exon 6497673 6497859 6497673 ID=Msa1175200-mRNA-1:exon:2311;Parent=Msa1175200-mRNA-1
chr8_1 exon 6499569 6499696 6499569 ID=Msa1175200-mRNA-1:exon:2312;Parent=Msa1175200-mRNA-1
chr8_1 exon 6500113 6500167 6500113 ID=Msa1175200-mRNA-1:exon:2313;Parent=Msa1175200-mRNA-1
chr8_1 exon 6500474 6500512 6500474 ID=Msa1175200-mRNA-1:exon:2314;Parent=Msa1175200-mRNA-1
chr8_1 exon 6500645 6500708 6500645 ID=Msa1175200-mRNA-1:exon:2315;Parent=Msa1175200-mRNA-1
chr8_1 exon 6500795 6500856 6500795 ID=Msa1175200-mRNA-1:exon:2316;Parent=Msa1175200-mRNA-1
chr8_1 exon 6500954 6500993 6500954 ID=Msa1175200-mRNA-1:exon:2317;Parent=Msa1175200-mRNA-1
chr8_1 exon 6501172 6501199 6501172 ID=Msa1175200-mRNA-1:exon:2318;Parent=Msa1175200-mRNA-1
chr8_1 exon 6501810 6501916 6501810 ID=Msa1175200-mRNA-1:exon:2319;Parent=Msa1175200-mRNA-1
chr8_1 exon 6501992 6502742 6501992 ID=Msa1175200-mRNA-1:exon:2320;Parent=Msa1175200-mRNA-1
chr8_1 five_prime_UTR 6497673 6497859 6497673 ID=Msa1175200-mRNA-1:five_prime_utr;Parent=Msa1175200-mRNA-1
chr8_1 five_prime_UTR 6499569 6499639 6499569 ID=Msa1175200-mRNA-1:five_prime_utr;Parent=Msa1175200-mRNA-1
chr8_1 CDS 6499640 6499696 6499640 ID=Msa1175200-mRNA-1:cds;Parent=Msa1175200-mRNA-1
chr8_1 CDS 6500113 6500167 6500113 ID=Msa1175200-mRNA-1:cds;Parent=Msa1175200-mRNA-1
chr8_1 CDS 6500474 6500512 6500474 ID=Msa1175200-mRNA-1:cds;Parent=Msa1175200-mRNA-1
chr8_1 CDS 6500645 6500708 6500645 ID=Msa1175200-mRNA-1:cds;Parent=Msa1175200-mRNA-1
chr8_1 CDS 6500795 6500856 6500795 ID=Msa1175200-mRNA-1:cds;Parent=Msa1175200-mRNA-1
chr8_1 CDS 6500954 6500993 6500954 ID=Msa1175200-mRNA-1:cds;Parent=Msa1175200-mRNA-1
chr8_1 CDS 6501172 6501199 6501172 ID=Msa1175200-mRNA-1:cds;Parent=Msa1175200-mRNA-1
chr8_1 CDS 6501810 6501916 6501810 ID=Msa1175200-mRNA-1:cds;Parent=Msa1175200-mRNA-1
chr8_1 CDS 6501992 6502277 6501992 ID=Msa1175200-mRNA-1:cds;Parent=Msa1175200-mRNA-1
chr8_1 three_prime_UTR 6502278 6502742 6502278 ID=Msa1175200-mRNA-1:three_prime_utr;Parent=Msa1175200-mRNA-1
Gene Sequence

>Msa1175200

ATGGCGGAGAAAGCATGCATCAAGCGCCTTCAGAAGGAGTATAGAGCACTTTGTAAAGAGCCAGTTTCCCATATTGTGGCCCGTCCTTCACCAAGTGATATTCTTGAGTGGCATTACGTATTGGAAGGAAGCGAGGGAACACCTTTCTCAGGTGGATATTACTATGGAAAAATCAAGTTTCCTCAGGAATATCCTTATAAACCTCCTGGAATCAGCATGACAACACCTAATGGGCGGTTCATGACACAGAAAAAGATCTGTTTATCAATGAGCGATTTTCATCCTGAAAGTTGGAATCCAATGTGGTCTGTATCAAGCATACTTACCGGGCTTCTTTCATTCATGACTTCTCTTTTGCAGATGGATACCAGTCCAACCACTGGCAGTGTAAACACTACTACTGCCGAGAAGCAGCGTCTAGCAAAATCTTCAATGTCTTTCAATTGTAAGAATGCAACATTCAGGAAGATGTTCCCCGAGTACGTGGAGAAGTACAACAAGCAGCAGCTTTCTGAGCAAGTTACTTCTGAGCAGCCAACGTCATCAGAGACTGGTCAAGATAAAAGTCCGAGGTCTGTTTTGGAAAACAATGTAGAGTCCACAGGAGAAGACTTGAAAAGGGTTGAGGGATTGAAGGATGCGAGGAGAAACAGAAAACAAGGATTTCCAACCTGGATGATGTTATTACTCTTCTCCATCTTTGGGGTTGTTATGGCATTACCTCTACTCCAGCTGTGA

Protein sequence

>Msa1175200

MAEKACIKRLQKEYRALCKEPVSHIVARPSPSDILEWHYVLEGSEGTPFSGGYYYGKIKFPQEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMTSLLQMDTSPTTGSVNTTTAEKQRLAKSSMSFNCKNATFRKMFPEYVEKYNKQQLSEQVTSEQPTSSETGQDKSPRSVLENNVESTGEDLKRVEGLKDARRNRKQGFPTWMMLLLFSIFGVVMALPLLQL*