Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277820 | RHN39554.1 | 85.366 | 123 | 15 | 1 | 2 | 121 | 141 | 263 | 5.12e-62 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277820 | sp|Q94FN2|MOR1_ARATH | 74.797 | 123 | 28 | 1 | 2 | 121 | 140 | 262 | 6.82e-54 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277820 | A0A396GIX9 | 85.366 | 123 | 15 | 1 | 2 | 121 | 141 | 263 | 2.45e-62 | 206 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1176730 | Msa1277820 | 0.831907 | 1.279384e-55 | -8.615850e-47 |
| Msa1176760 | Msa1277820 | 0.806573 | 7.702947e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277820 | MtrunA17_Chr8g0345051 | 85.366 | 123 | 15 | 1 | 2 | 121 | 141 | 263 | 4.71e-66 | 206 |
| Msa1277820 | MtrunA17_Chr1g0199191 | 86.992 | 123 | 13 | 1 | 2 | 121 | 140 | 262 | 9.80e-64 | 212 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277820 | AT2G35630.2 | 74.797 | 123 | 28 | 1 | 2 | 121 | 30 | 152 | 5.42e-55 | 187 |
| Msa1277820 | AT2G35630.1 | 74.797 | 123 | 28 | 1 | 2 | 121 | 140 | 262 | 6.93e-55 | 187 |
Find 42 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTATGTTTCAAGCTTTA+AGG | 0.125396 | 8_3:+13624315 | Msa1277820:CDS |
| CCTCATGCTGCTAGTGAATT+TGG | 0.240578 | 8_3:+13624412 | Msa1277820:intron |
| CAAAGCCAAGCCGCAGAATA+AGG | 0.272720 | 8_3:+13624732 | Msa1277820:CDS |
| ATGTCCGTGCATCCTCTAAA+AGG | 0.298552 | 8_3:+13624494 | Msa1277820:CDS |
| TCAGATATAGTTTCCTGTTC+AGG | 0.305077 | 8_3:-13625418 | None:intergenic |
| AGCCCCTCACGAGCGGAAAT+TGG | 0.333468 | 8_3:+13625472 | Msa1277820:CDS |
| TAGAGGATGCACGGACATTT+TGG | 0.334892 | 8_3:-13624489 | None:intergenic |
| GCAGAAGTTGTAAATGTTAC+AGG | 0.335661 | 8_3:+13624704 | Msa1277820:CDS |
| GAGGGGCTCGGCTTCTCAGC+AGG | 0.346933 | 8_3:-13625457 | None:intergenic |
| AGGCTGATATCAAGAAATTC+AGG | 0.397026 | 8_3:+13625911 | Msa1277820:three_prime_UTR |
| TCCTTCTCCGGTAAAGACTT+TGG | 0.415499 | 8_3:-13625880 | None:intergenic |
| TGAAACTCCAAAGTCTTTAC+CGG | 0.427991 | 8_3:+13625873 | Msa1277820:three_prime_UTR |
| GCCTCCAACGGTTCCTTCTC+CGG | 0.437782 | 8_3:-13625892 | None:intergenic |
| ATATCTGAGGTTGTGGGAGC+TGG | 0.442783 | 8_3:+13625433 | Msa1277820:CDS |
| ATCTACCTTATTCTGCGGCT+TGG | 0.461561 | 8_3:-13624737 | None:intergenic |
| GAAAGACAAGGAACCTGAAC+AGG | 0.467000 | 8_3:+13625405 | Msa1277820:CDS |
| GGAAACTATATCTGAGGTTG+TGG | 0.474145 | 8_3:+13625426 | Msa1277820:CDS |
| TGAAACATAACATCTATTGC+AGG | 0.480399 | 8_3:-13624305 | None:intergenic |
| ATTTCCGCTCGTGAGGGGCT+CGG | 0.485622 | 8_3:-13625469 | None:intergenic |
| ACCGGAGAAGGAACCGTTGG+AGG | 0.491893 | 8_3:+13625891 | Msa1277820:three_prime_UTR |
| TCCAAAGTCTTTACCGGAGA+AGG | 0.524901 | 8_3:+13625879 | Msa1277820:three_prime_UTR |
| CAGATATCTACCTTATTCTG+CGG | 0.539484 | 8_3:-13624742 | None:intergenic |
| TAATCTGCTCCTTTAGAGAC+TGG | 0.540159 | 8_3:-13625811 | None:intergenic |
| GTTACCAATTTCCGCTCGTG+AGG | 0.546215 | 8_3:-13625476 | None:intergenic |
| TCCGTAGTACCAGTCTCTAA+AGG | 0.549308 | 8_3:+13625802 | Msa1277820:intron |
| TTACCAATTTCCGCTCGTGA+GGG | 0.551902 | 8_3:-13625475 | None:intergenic |
| AGGGGCTCGGCTTCTCAGCA+GGG | 0.555868 | 8_3:-13625456 | None:intergenic |
| GAAACTATATCTGAGGTTGT+GGG | 0.561907 | 8_3:+13625427 | Msa1277820:CDS |
| AAGTGGCTCTCATACGTATG+AGG | 0.563131 | 8_3:+13625694 | Msa1277820:CDS |
| TTTACCGGAGAAGGAACCGT+TGG | 0.569658 | 8_3:+13625888 | Msa1277820:three_prime_UTR |
| AATATGCTGCTGAGCTGAAG+CGG | 0.570805 | 8_3:+13625654 | Msa1277820:CDS |
| AGTACACAATCTGTTATACT+TGG | 0.577343 | 8_3:-13625843 | None:intergenic |
| TACCAATTTCCGCTCGTGAG+GGG | 0.587121 | 8_3:-13625474 | None:intergenic |
| CATGAACAAAGTTGCTAAAG+CGG | 0.589391 | 8_3:+13624277 | None:intergenic |
| AAGACTTTGGAGTTTCAGCT+AGG | 0.590481 | 8_3:-13625867 | None:intergenic |
| TTCTTGATATCAGCCTCCAA+CGG | 0.604556 | 8_3:-13625904 | None:intergenic |
| TATGAGAGCCACTTCGTAGG+AGG | 0.630310 | 8_3:-13625685 | None:intergenic |
| TGAGAAAATGAGAGACACAA+TGG | 0.645368 | 8_3:+13624573 | Msa1277820:CDS |
| GAACAAAGTTGCTAAAGCGG+TGG | 0.649271 | 8_3:+13624280 | Msa1277820:CDS |
| TGAACAGGAAACTATATCTG+AGG | 0.664652 | 8_3:+13625420 | Msa1277820:CDS |
| TCTACTAACCTCCTACGAAG+TGG | 0.677424 | 8_3:+13625677 | Msa1277820:CDS |
| ACGTATGAGAGCCACTTCGT+AGG | 0.678193 | 8_3:-13625688 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATTGTCAATTTGA+TGG | + | chr8_3:13625033-13625052 | Msa1277820:intron | 15.0% |
| !! | AAATATTCTTCAAAAGAAAA+TGG | + | chr8_3:13625078-13625097 | Msa1277820:intron | 15.0% |
| !!! | GCATATTTTTCTATTTTATT+TGG | - | chr8_3:13625641-13625660 | None:intergenic | 15.0% |
| !!! | TAAGTTTTTATGAAAGTTTA+TGG | + | chr8_3:13625717-13625736 | Msa1277820:intron | 15.0% |
| !! | AAAAAAAATTGTCAATTTGA+TGG | + | chr8_3:13625033-13625052 | Msa1277820:intron | 15.0% |
| !! | AAATATTCTTCAAAAGAAAA+TGG | + | chr8_3:13625078-13625097 | Msa1277820:intron | 15.0% |
| !!! | GCATATTTTTCTATTTTATT+TGG | - | chr8_3:13625641-13625660 | None:intergenic | 15.0% |
| !!! | TAAGTTTTTATGAAAGTTTA+TGG | + | chr8_3:13625717-13625736 | Msa1277820:intron | 15.0% |
| !!! | AGCATTTTCAAAATTCTTTT+CGG | - | chr8_3:13624454-13624473 | None:intergenic | 20.0% |
| !! | GATACTTTACAATTTACATT+AGG | - | chr8_3:13624644-13624663 | None:intergenic | 20.0% |
| !! | TCATATCTTAAAAAGCAAAA+TGG | - | chr8_3:13624907-13624926 | None:intergenic | 20.0% |
| !!! | TTTTGAATAGTTTTGTTCAT+TGG | - | chr8_3:13625131-13625150 | None:intergenic | 20.0% |
| !! | TAATTGTAAATCATTGTATG+AGG | + | chr8_3:13625338-13625357 | Msa1277820:intron | 20.0% |
| !! | AATTGTAAATCATTGTATGA+GGG | + | chr8_3:13625339-13625358 | Msa1277820:intron | 20.0% |
| !!! | TTTATCTTCTATTTAGTTTG+TGG | + | chr8_3:13625533-13625552 | Msa1277820:intron | 20.0% |
| !! | TTGTTTGATGTATATACATT+TGG | + | chr8_3:13625556-13625575 | Msa1277820:intron | 20.0% |
| !!! | AGCATTTTCAAAATTCTTTT+CGG | - | chr8_3:13624454-13624473 | None:intergenic | 20.0% |
| !! | GATACTTTACAATTTACATT+AGG | - | chr8_3:13624644-13624663 | None:intergenic | 20.0% |
| !! | TCATATCTTAAAAAGCAAAA+TGG | - | chr8_3:13624907-13624926 | None:intergenic | 20.0% |
| !!! | TTTTGAATAGTTTTGTTCAT+TGG | - | chr8_3:13625131-13625150 | None:intergenic | 20.0% |
| !! | TAATTGTAAATCATTGTATG+AGG | + | chr8_3:13625338-13625357 | Msa1277820:intron | 20.0% |
| !! | AATTGTAAATCATTGTATGA+GGG | + | chr8_3:13625339-13625358 | Msa1277820:intron | 20.0% |
| !!! | TTTATCTTCTATTTAGTTTG+TGG | + | chr8_3:13625533-13625552 | Msa1277820:intron | 20.0% |
| !! | TTGTTTGATGTATATACATT+TGG | + | chr8_3:13625556-13625575 | Msa1277820:intron | 20.0% |
| ! | ATGTTATGTTTCAAGCTTTA+AGG | + | chr8_3:13624315-13624334 | Msa1277820:CDS | 25.0% |
| !! | GCATTTTCAAAATTCTTTTC+GGG | - | chr8_3:13624453-13624472 | None:intergenic | 25.0% |
| ! | ATAACAAATCAATCACTAAG+AGG | - | chr8_3:13624613-13624632 | None:intergenic | 25.0% |
| ! | ACTTTACAATTTACATTAGG+AGG | - | chr8_3:13624641-13624660 | None:intergenic | 25.0% |
| ! | GGAAAGGGATAAAATAAAAA+AGG | - | chr8_3:13624886-13624905 | None:intergenic | 25.0% |
| ! | CTTAAAAAGCAAAATGGAAA+GGG | - | chr8_3:13624901-13624920 | None:intergenic | 25.0% |
| ! | TCTTAAAAAGCAAAATGGAA+AGG | - | chr8_3:13624902-13624921 | None:intergenic | 25.0% |
| !! | AAAAAGAGTTTCAGTTTTCA+GGG | - | chr8_3:13625267-13625286 | None:intergenic | 25.0% |
| !! | TAAAAAGAGTTTCAGTTTTC+AGG | - | chr8_3:13625268-13625287 | None:intergenic | 25.0% |
| ! | TCTCAGATCTAAAAAAATGT+TGG | - | chr8_3:13625387-13625406 | None:intergenic | 25.0% |
| !!! | TAAATCAAAAGCATTGCTAA+AGG | - | chr8_3:13625745-13625764 | None:intergenic | 25.0% |
| ! | ATGTTATGTTTCAAGCTTTA+AGG | + | chr8_3:13624315-13624334 | Msa1277820:CDS | 25.0% |
| !! | GCATTTTCAAAATTCTTTTC+GGG | - | chr8_3:13624453-13624472 | None:intergenic | 25.0% |
| ! | ATAACAAATCAATCACTAAG+AGG | - | chr8_3:13624613-13624632 | None:intergenic | 25.0% |
| ! | ACTTTACAATTTACATTAGG+AGG | - | chr8_3:13624641-13624660 | None:intergenic | 25.0% |
| ! | GGAAAGGGATAAAATAAAAA+AGG | - | chr8_3:13624886-13624905 | None:intergenic | 25.0% |
| ! | CTTAAAAAGCAAAATGGAAA+GGG | - | chr8_3:13624901-13624920 | None:intergenic | 25.0% |
| ! | TCTTAAAAAGCAAAATGGAA+AGG | - | chr8_3:13624902-13624921 | None:intergenic | 25.0% |
| !! | AAAAAGAGTTTCAGTTTTCA+GGG | - | chr8_3:13625267-13625286 | None:intergenic | 25.0% |
| !! | TAAAAAGAGTTTCAGTTTTC+AGG | - | chr8_3:13625268-13625287 | None:intergenic | 25.0% |
| ! | TCTCAGATCTAAAAAAATGT+TGG | - | chr8_3:13625387-13625406 | None:intergenic | 25.0% |
| !!! | TAAATCAAAAGCATTGCTAA+AGG | - | chr8_3:13625745-13625764 | None:intergenic | 25.0% |
| TGAAACATAACATCTATTGC+AGG | - | chr8_3:13624308-13624327 | None:intergenic | 30.0% | |
| !! | ATGTTTCAAGCTTTAAGGTT+TGG | + | chr8_3:13624320-13624339 | Msa1277820:intron | 30.0% |
| TCTTTCTGTAGAAAAAAGAG+TGG | + | chr8_3:13624678-13624697 | Msa1277820:intron | 30.0% | |
| CTTTCTGTAGAAAAAAGAGT+GGG | + | chr8_3:13624679-13624698 | Msa1277820:intron | 30.0% | |
| ATAAAAAAGGATCTTCTCGA+TGG | - | chr8_3:13624778-13624797 | None:intergenic | 30.0% | |
| ! | AAAAAGTATAAGAATGCTCG+TGG | - | chr8_3:13624833-13624852 | None:intergenic | 30.0% |
| ! | AAAAAAGGCGTACATAATGA+AGG | - | chr8_3:13624871-13624890 | None:intergenic | 30.0% |
| TAGCATTAAAGATCGTCTAA+GGG | - | chr8_3:13624981-13625000 | None:intergenic | 30.0% | |
| ! | TTTTAGTATCTACCCTAGAT+AGG | - | chr8_3:13625061-13625080 | None:intergenic | 30.0% |
| CAAAAATTATGCCGGAAATT+TGG | - | chr8_3:13625212-13625231 | None:intergenic | 30.0% | |
| TCAGGGAGTAAGTTAAAATT+TGG | - | chr8_3:13625250-13625269 | None:intergenic | 30.0% | |
| ! | TCTTTTTATCAAGCCAGATA+GGG | + | chr8_3:13625280-13625299 | Msa1277820:intron | 30.0% |
| !!! | GAATCTTTTGCTTGTTATGT+TGG | + | chr8_3:13625312-13625331 | Msa1277820:intron | 30.0% |
| TGTTGGAATATCTATCAAGA+TGG | - | chr8_3:13625370-13625389 | None:intergenic | 30.0% | |
| ! | TTTTAGATCTGAGAAAGACA+AGG | + | chr8_3:13625393-13625412 | Msa1277820:intron | 30.0% |
| AGTACACAATCTGTTATACT+TGG | - | chr8_3:13625846-13625865 | None:intergenic | 30.0% | |
| TGAAACATAACATCTATTGC+AGG | - | chr8_3:13624308-13624327 | None:intergenic | 30.0% | |
| !! | ATGTTTCAAGCTTTAAGGTT+TGG | + | chr8_3:13624320-13624339 | Msa1277820:intron | 30.0% |
| TCTTTCTGTAGAAAAAAGAG+TGG | + | chr8_3:13624678-13624697 | Msa1277820:intron | 30.0% | |
| CTTTCTGTAGAAAAAAGAGT+GGG | + | chr8_3:13624679-13624698 | Msa1277820:intron | 30.0% | |
| ATAAAAAAGGATCTTCTCGA+TGG | - | chr8_3:13624778-13624797 | None:intergenic | 30.0% | |
| ! | AAAAAGTATAAGAATGCTCG+TGG | - | chr8_3:13624833-13624852 | None:intergenic | 30.0% |
| ! | AAAAAAGGCGTACATAATGA+AGG | - | chr8_3:13624871-13624890 | None:intergenic | 30.0% |
| TAGCATTAAAGATCGTCTAA+GGG | - | chr8_3:13624981-13625000 | None:intergenic | 30.0% | |
| ! | TTTTAGTATCTACCCTAGAT+AGG | - | chr8_3:13625061-13625080 | None:intergenic | 30.0% |
| CAAAAATTATGCCGGAAATT+TGG | - | chr8_3:13625212-13625231 | None:intergenic | 30.0% | |
| TCAGGGAGTAAGTTAAAATT+TGG | - | chr8_3:13625250-13625269 | None:intergenic | 30.0% | |
| ! | TCTTTTTATCAAGCCAGATA+GGG | + | chr8_3:13625280-13625299 | Msa1277820:intron | 30.0% |
| !!! | GAATCTTTTGCTTGTTATGT+TGG | + | chr8_3:13625312-13625331 | Msa1277820:intron | 30.0% |
| TGTTGGAATATCTATCAAGA+TGG | - | chr8_3:13625370-13625389 | None:intergenic | 30.0% | |
| ! | TTTTAGATCTGAGAAAGACA+AGG | + | chr8_3:13625393-13625412 | Msa1277820:intron | 30.0% |
| AGTACACAATCTGTTATACT+TGG | - | chr8_3:13625846-13625865 | None:intergenic | 30.0% | |
| ! | TTCAAAAGTCAGCCTTTTAG+AGG | - | chr8_3:13624509-13624528 | None:intergenic | 35.0% |
| !!! | TGACTTTTGAACTTTTTCGC+TGG | + | chr8_3:13624518-13624537 | Msa1277820:CDS | 35.0% |
| !!! | GACTTTTGAACTTTTTCGCT+GGG | + | chr8_3:13624519-13624538 | Msa1277820:CDS | 35.0% |
| TGAGAAAATGAGAGACACAA+TGG | + | chr8_3:13624573-13624592 | Msa1277820:CDS | 35.0% | |
| CAGAAAGAAAGAGAGAGAAT+TGG | - | chr8_3:13624666-13624685 | None:intergenic | 35.0% | |
| GCAGAAGTTGTAAATGTTAC+AGG | + | chr8_3:13624704-13624723 | Msa1277820:CDS | 35.0% | |
| CAGATATCTACCTTATTCTG+CGG | - | chr8_3:13624745-13624764 | None:intergenic | 35.0% | |
| !!! | AGATCCTTTTTTATGCCTAC+CGG | + | chr8_3:13624784-13624803 | Msa1277820:intron | 35.0% |
| TCAGATGTCATAATGCTGTT+TGG | + | chr8_3:13624954-13624973 | Msa1277820:intron | 35.0% | |
| CTAGCATTAAAGATCGTCTA+AGG | - | chr8_3:13624982-13625001 | None:intergenic | 35.0% | |
| AATTTGATGGAGCCTATCTA+GGG | + | chr8_3:13625046-13625065 | Msa1277820:intron | 35.0% | |
| !!! | TAGTTTTGTTCATTGGAAGC+AGG | - | chr8_3:13625124-13625143 | None:intergenic | 35.0% |
| ! | ATTTCCGGCATAATTTTTGC+TGG | + | chr8_3:13625213-13625232 | Msa1277820:intron | 35.0% |
| ACAACCAGCAAAAATTATGC+CGG | - | chr8_3:13625220-13625239 | None:intergenic | 35.0% | |
| ! | CTCTTTTTATCAAGCCAGAT+AGG | + | chr8_3:13625279-13625298 | Msa1277820:intron | 35.0% |
| ! | CTTTTTATCAAGCCAGATAG+GGG | + | chr8_3:13625281-13625300 | Msa1277820:intron | 35.0% |
| ! | ATTCAAGTTAAACCCCTATC+TGG | - | chr8_3:13625296-13625315 | None:intergenic | 35.0% |
| TCAGATATAGTTTCCTGTTC+AGG | - | chr8_3:13625421-13625440 | None:intergenic | 35.0% | |
| TGAACAGGAAACTATATCTG+AGG | + | chr8_3:13625420-13625439 | Msa1277820:CDS | 35.0% | |
| ! | GAAACTATATCTGAGGTTGT+GGG | + | chr8_3:13625427-13625446 | Msa1277820:CDS | 35.0% |
| GAAACGATTTATTTGACCGA+GGG | - | chr8_3:13625503-13625522 | None:intergenic | 35.0% | |
| AGAAACGATTTATTTGACCG+AGG | - | chr8_3:13625504-13625523 | None:intergenic | 35.0% | |
| TGAAACTCCAAAGTCTTTAC+CGG | + | chr8_3:13625873-13625892 | Msa1277820:three_prime_UTR | 35.0% | |
| AGGCTGATATCAAGAAATTC+AGG | + | chr8_3:13625911-13625930 | Msa1277820:three_prime_UTR | 35.0% | |
| ! | TTCAAAAGTCAGCCTTTTAG+AGG | - | chr8_3:13624509-13624528 | None:intergenic | 35.0% |
| !!! | TGACTTTTGAACTTTTTCGC+TGG | + | chr8_3:13624518-13624537 | Msa1277820:CDS | 35.0% |
| !!! | GACTTTTGAACTTTTTCGCT+GGG | + | chr8_3:13624519-13624538 | Msa1277820:CDS | 35.0% |
| TGAGAAAATGAGAGACACAA+TGG | + | chr8_3:13624573-13624592 | Msa1277820:CDS | 35.0% | |
| CAGAAAGAAAGAGAGAGAAT+TGG | - | chr8_3:13624666-13624685 | None:intergenic | 35.0% | |
| GCAGAAGTTGTAAATGTTAC+AGG | + | chr8_3:13624704-13624723 | Msa1277820:CDS | 35.0% | |
| CAGATATCTACCTTATTCTG+CGG | - | chr8_3:13624745-13624764 | None:intergenic | 35.0% | |
| !!! | AGATCCTTTTTTATGCCTAC+CGG | + | chr8_3:13624784-13624803 | Msa1277820:intron | 35.0% |
| TCAGATGTCATAATGCTGTT+TGG | + | chr8_3:13624954-13624973 | Msa1277820:intron | 35.0% | |
| CTAGCATTAAAGATCGTCTA+AGG | - | chr8_3:13624982-13625001 | None:intergenic | 35.0% | |
| AATTTGATGGAGCCTATCTA+GGG | + | chr8_3:13625046-13625065 | Msa1277820:intron | 35.0% | |
| !!! | TAGTTTTGTTCATTGGAAGC+AGG | - | chr8_3:13625124-13625143 | None:intergenic | 35.0% |
| ! | ATTTCCGGCATAATTTTTGC+TGG | + | chr8_3:13625213-13625232 | Msa1277820:intron | 35.0% |
| ACAACCAGCAAAAATTATGC+CGG | - | chr8_3:13625220-13625239 | None:intergenic | 35.0% | |
| ! | CTCTTTTTATCAAGCCAGAT+AGG | + | chr8_3:13625279-13625298 | Msa1277820:intron | 35.0% |
| ! | CTTTTTATCAAGCCAGATAG+GGG | + | chr8_3:13625281-13625300 | Msa1277820:intron | 35.0% |
| ! | ATTCAAGTTAAACCCCTATC+TGG | - | chr8_3:13625296-13625315 | None:intergenic | 35.0% |
| TCAGATATAGTTTCCTGTTC+AGG | - | chr8_3:13625421-13625440 | None:intergenic | 35.0% | |
| TGAACAGGAAACTATATCTG+AGG | + | chr8_3:13625420-13625439 | Msa1277820:CDS | 35.0% | |
| ! | GAAACTATATCTGAGGTTGT+GGG | + | chr8_3:13625427-13625446 | Msa1277820:CDS | 35.0% |
| GAAACGATTTATTTGACCGA+GGG | - | chr8_3:13625503-13625522 | None:intergenic | 35.0% | |
| AGAAACGATTTATTTGACCG+AGG | - | chr8_3:13625504-13625523 | None:intergenic | 35.0% | |
| TGAAACTCCAAAGTCTTTAC+CGG | + | chr8_3:13625873-13625892 | Msa1277820:three_prime_UTR | 35.0% | |
| AGGCTGATATCAAGAAATTC+AGG | + | chr8_3:13625911-13625930 | Msa1277820:three_prime_UTR | 35.0% | |
| !!! | ACATTTTGGTCTTGGTGTTC+TGG | - | chr8_3:13624478-13624497 | None:intergenic | 40.0% |
| GACACAATGGTAAGCTTATC+TGG | + | chr8_3:13624586-13624605 | Msa1277820:intron | 40.0% | |
| ATGTCCGGTAGGCATAAAAA+AGG | - | chr8_3:13624791-13624810 | None:intergenic | 40.0% | |
| ! | TCGTGGATTGCAACACATTA+CGG | - | chr8_3:13624816-13624835 | None:intergenic | 40.0% |
| CATCTGAATGCACAAATCTC+TGG | - | chr8_3:13624941-13624960 | None:intergenic | 40.0% | |
| CAATTTGATGGAGCCTATCT+AGG | + | chr8_3:13625045-13625064 | Msa1277820:intron | 40.0% | |
| TTGTTCATTGGAAGCAGGTA+GGG | - | chr8_3:13625119-13625138 | None:intergenic | 40.0% | |
| TTTGTTCATTGGAAGCAGGT+AGG | - | chr8_3:13625120-13625139 | None:intergenic | 40.0% | |
| ! | TTTTGCTCGAGCCAAATTTC+CGG | + | chr8_3:13625198-13625217 | Msa1277820:intron | 40.0% |
| ! | GGAAACTATATCTGAGGTTG+TGG | + | chr8_3:13625426-13625445 | Msa1277820:CDS | 40.0% |
| ! | TCCTTTAGAGACTGGTACTA+CGG | - | chr8_3:13625806-13625825 | None:intergenic | 40.0% |
| ! | TAATCTGCTCCTTTAGAGAC+TGG | - | chr8_3:13625814-13625833 | None:intergenic | 40.0% |
| !! | AAGACTTTGGAGTTTCAGCT+AGG | - | chr8_3:13625870-13625889 | None:intergenic | 40.0% |
| TTCTTGATATCAGCCTCCAA+CGG | - | chr8_3:13625907-13625926 | None:intergenic | 40.0% | |
| !!! | ACATTTTGGTCTTGGTGTTC+TGG | - | chr8_3:13624478-13624497 | None:intergenic | 40.0% |
| GACACAATGGTAAGCTTATC+TGG | + | chr8_3:13624586-13624605 | Msa1277820:intron | 40.0% | |
| ATGTCCGGTAGGCATAAAAA+AGG | - | chr8_3:13624791-13624810 | None:intergenic | 40.0% | |
| ! | TCGTGGATTGCAACACATTA+CGG | - | chr8_3:13624816-13624835 | None:intergenic | 40.0% |
| CATCTGAATGCACAAATCTC+TGG | - | chr8_3:13624941-13624960 | None:intergenic | 40.0% | |
| CAATTTGATGGAGCCTATCT+AGG | + | chr8_3:13625045-13625064 | Msa1277820:intron | 40.0% | |
| TTGTTCATTGGAAGCAGGTA+GGG | - | chr8_3:13625119-13625138 | None:intergenic | 40.0% | |
| TTTGTTCATTGGAAGCAGGT+AGG | - | chr8_3:13625120-13625139 | None:intergenic | 40.0% | |
| ! | TTTTGCTCGAGCCAAATTTC+CGG | + | chr8_3:13625198-13625217 | Msa1277820:intron | 40.0% |
| ! | GGAAACTATATCTGAGGTTG+TGG | + | chr8_3:13625426-13625445 | Msa1277820:CDS | 40.0% |
| ! | TCCTTTAGAGACTGGTACTA+CGG | - | chr8_3:13625806-13625825 | None:intergenic | 40.0% |
| ! | TAATCTGCTCCTTTAGAGAC+TGG | - | chr8_3:13625814-13625833 | None:intergenic | 40.0% |
| !! | AAGACTTTGGAGTTTCAGCT+AGG | - | chr8_3:13625870-13625889 | None:intergenic | 40.0% |
| TTCTTGATATCAGCCTCCAA+CGG | - | chr8_3:13625907-13625926 | None:intergenic | 40.0% | |
| GAACAAAGTTGCTAAAGCGG+TGG | + | chr8_3:13624280-13624299 | Msa1277820:CDS | 45.0% | |
| CCAAATTCACTAGCAGCATG+AGG | - | chr8_3:13624415-13624434 | None:intergenic | 45.0% | |
| CCTCATGCTGCTAGTGAATT+TGG | + | chr8_3:13624412-13624431 | Msa1277820:intron | 45.0% | |
| !! | ATGCACGGACATTTTGGTCT+TGG | - | chr8_3:13624486-13624505 | None:intergenic | 45.0% |
| ! | TAGAGGATGCACGGACATTT+TGG | - | chr8_3:13624492-13624511 | None:intergenic | 45.0% |
| ATGTCCGTGCATCCTCTAAA+AGG | + | chr8_3:13624494-13624513 | Msa1277820:CDS | 45.0% | |
| !! | TCAGCCTTTTAGAGGATGCA+CGG | - | chr8_3:13624501-13624520 | None:intergenic | 45.0% |
| ATCTACCTTATTCTGCGGCT+TGG | - | chr8_3:13624740-13624759 | None:intergenic | 45.0% | |
| CAACACATTACGGCAATGTC+CGG | - | chr8_3:13624806-13624825 | None:intergenic | 45.0% | |
| GAAAGACAAGGAACCTGAAC+AGG | + | chr8_3:13625405-13625424 | Msa1277820:CDS | 45.0% | |
| TTACCAATTTCCGCTCGTGA+GGG | - | chr8_3:13625478-13625497 | None:intergenic | 45.0% | |
| AATATGCTGCTGAGCTGAAG+CGG | + | chr8_3:13625654-13625673 | Msa1277820:CDS | 45.0% | |
| TCTACTAACCTCCTACGAAG+TGG | + | chr8_3:13625677-13625696 | Msa1277820:CDS | 45.0% | |
| AAGTGGCTCTCATACGTATG+AGG | + | chr8_3:13625694-13625713 | Msa1277820:CDS | 45.0% | |
| TCCGTAGTACCAGTCTCTAA+AGG | + | chr8_3:13625802-13625821 | Msa1277820:intron | 45.0% | |
| TCCAAAGTCTTTACCGGAGA+AGG | + | chr8_3:13625879-13625898 | Msa1277820:three_prime_UTR | 45.0% | |
| TCCTTCTCCGGTAAAGACTT+TGG | - | chr8_3:13625883-13625902 | None:intergenic | 45.0% | |
| GAACAAAGTTGCTAAAGCGG+TGG | + | chr8_3:13624280-13624299 | Msa1277820:CDS | 45.0% | |
| CCAAATTCACTAGCAGCATG+AGG | - | chr8_3:13624415-13624434 | None:intergenic | 45.0% | |
| CCTCATGCTGCTAGTGAATT+TGG | + | chr8_3:13624412-13624431 | Msa1277820:intron | 45.0% | |
| !! | ATGCACGGACATTTTGGTCT+TGG | - | chr8_3:13624486-13624505 | None:intergenic | 45.0% |
| ! | TAGAGGATGCACGGACATTT+TGG | - | chr8_3:13624492-13624511 | None:intergenic | 45.0% |
| ATGTCCGTGCATCCTCTAAA+AGG | + | chr8_3:13624494-13624513 | Msa1277820:CDS | 45.0% | |
| !! | TCAGCCTTTTAGAGGATGCA+CGG | - | chr8_3:13624501-13624520 | None:intergenic | 45.0% |
| ATCTACCTTATTCTGCGGCT+TGG | - | chr8_3:13624740-13624759 | None:intergenic | 45.0% | |
| CAACACATTACGGCAATGTC+CGG | - | chr8_3:13624806-13624825 | None:intergenic | 45.0% | |
| GAAAGACAAGGAACCTGAAC+AGG | + | chr8_3:13625405-13625424 | Msa1277820:CDS | 45.0% | |
| TTACCAATTTCCGCTCGTGA+GGG | - | chr8_3:13625478-13625497 | None:intergenic | 45.0% | |
| AATATGCTGCTGAGCTGAAG+CGG | + | chr8_3:13625654-13625673 | Msa1277820:CDS | 45.0% | |
| TCTACTAACCTCCTACGAAG+TGG | + | chr8_3:13625677-13625696 | Msa1277820:CDS | 45.0% | |
| AAGTGGCTCTCATACGTATG+AGG | + | chr8_3:13625694-13625713 | Msa1277820:CDS | 45.0% | |
| TCCGTAGTACCAGTCTCTAA+AGG | + | chr8_3:13625802-13625821 | Msa1277820:intron | 45.0% | |
| TCCAAAGTCTTTACCGGAGA+AGG | + | chr8_3:13625879-13625898 | Msa1277820:three_prime_UTR | 45.0% | |
| TCCTTCTCCGGTAAAGACTT+TGG | - | chr8_3:13625883-13625902 | None:intergenic | 45.0% | |
| CAAAGCCAAGCCGCAGAATA+AGG | + | chr8_3:13624732-13624751 | Msa1277820:CDS | 50.0% | |
| ACATTACGGCAATGTCCGGT+AGG | - | chr8_3:13624802-13624821 | None:intergenic | 50.0% | |
| ! | ATATCTGAGGTTGTGGGAGC+TGG | + | chr8_3:13625433-13625452 | Msa1277820:CDS | 50.0% |
| TACCAATTTCCGCTCGTGAG+GGG | - | chr8_3:13625477-13625496 | None:intergenic | 50.0% | |
| GTTACCAATTTCCGCTCGTG+AGG | - | chr8_3:13625479-13625498 | None:intergenic | 50.0% | |
| ! | GCGGAAATTGGTAACTCCCT+CGG | + | chr8_3:13625484-13625503 | Msa1277820:intron | 50.0% |
| TATGAGAGCCACTTCGTAGG+AGG | - | chr8_3:13625688-13625707 | None:intergenic | 50.0% | |
| ACGTATGAGAGCCACTTCGT+AGG | - | chr8_3:13625691-13625710 | None:intergenic | 50.0% | |
| TTTACCGGAGAAGGAACCGT+TGG | + | chr8_3:13625888-13625907 | Msa1277820:three_prime_UTR | 50.0% | |
| CAAAGCCAAGCCGCAGAATA+AGG | + | chr8_3:13624732-13624751 | Msa1277820:CDS | 50.0% | |
| ACATTACGGCAATGTCCGGT+AGG | - | chr8_3:13624802-13624821 | None:intergenic | 50.0% | |
| ! | ATATCTGAGGTTGTGGGAGC+TGG | + | chr8_3:13625433-13625452 | Msa1277820:CDS | 50.0% |
| TACCAATTTCCGCTCGTGAG+GGG | - | chr8_3:13625477-13625496 | None:intergenic | 50.0% | |
| GTTACCAATTTCCGCTCGTG+AGG | - | chr8_3:13625479-13625498 | None:intergenic | 50.0% | |
| ! | GCGGAAATTGGTAACTCCCT+CGG | + | chr8_3:13625484-13625503 | Msa1277820:intron | 50.0% |
| TATGAGAGCCACTTCGTAGG+AGG | - | chr8_3:13625688-13625707 | None:intergenic | 50.0% | |
| ACGTATGAGAGCCACTTCGT+AGG | - | chr8_3:13625691-13625710 | None:intergenic | 50.0% | |
| TTTACCGGAGAAGGAACCGT+TGG | + | chr8_3:13625888-13625907 | Msa1277820:three_prime_UTR | 50.0% | |
| ATTTCCGCTCGTGAGGGGCT+CGG | - | chr8_3:13625472-13625491 | None:intergenic | 60.0% | |
| AGCCCCTCACGAGCGGAAAT+TGG | + | chr8_3:13625472-13625491 | Msa1277820:CDS | 60.0% | |
| ACCGGAGAAGGAACCGTTGG+AGG | + | chr8_3:13625891-13625910 | Msa1277820:three_prime_UTR | 60.0% | |
| GCCTCCAACGGTTCCTTCTC+CGG | - | chr8_3:13625895-13625914 | None:intergenic | 60.0% | |
| ATTTCCGCTCGTGAGGGGCT+CGG | - | chr8_3:13625472-13625491 | None:intergenic | 60.0% | |
| AGCCCCTCACGAGCGGAAAT+TGG | + | chr8_3:13625472-13625491 | Msa1277820:CDS | 60.0% | |
| ACCGGAGAAGGAACCGTTGG+AGG | + | chr8_3:13625891-13625910 | Msa1277820:three_prime_UTR | 60.0% | |
| GCCTCCAACGGTTCCTTCTC+CGG | - | chr8_3:13625895-13625914 | None:intergenic | 60.0% | |
| AGGGGCTCGGCTTCTCAGCA+GGG | - | chr8_3:13625459-13625478 | None:intergenic | 65.0% | |
| AGGGGCTCGGCTTCTCAGCA+GGG | - | chr8_3:13625459-13625478 | None:intergenic | 65.0% | |
| GAGGGGCTCGGCTTCTCAGC+AGG | - | chr8_3:13625460-13625479 | None:intergenic | 70.0% | |
| GAAGCCGAGCCCCTCACGAG+CGG | + | chr8_3:13625465-13625484 | Msa1277820:CDS | 70.0% | |
| GAGGGGCTCGGCTTCTCAGC+AGG | - | chr8_3:13625460-13625479 | None:intergenic | 70.0% | |
| GAAGCCGAGCCCCTCACGAG+CGG | + | chr8_3:13625465-13625484 | Msa1277820:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 13624278 | 13625944 | 13624278 | ID=Msa1277820;Name=Msa1277820 |
| chr8_3 | mRNA | 13624278 | 13625944 | 13624278 | ID=Msa1277820-mRNA-1;Parent=Msa1277820;Name=Msa1277820-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.8|0.83|1|1|1|6|73|183 |
| chr8_3 | exon | 13624278 | 13624336 | 13624278 | ID=Msa1277820-mRNA-1:exon:5362;Parent=Msa1277820-mRNA-1 |
| chr8_3 | exon | 13624426 | 13624594 | 13624426 | ID=Msa1277820-mRNA-1:exon:5363;Parent=Msa1277820-mRNA-1 |
| chr8_3 | exon | 13624689 | 13624753 | 13624689 | ID=Msa1277820-mRNA-1:exon:5364;Parent=Msa1277820-mRNA-1 |
| chr8_3 | exon | 13625399 | 13625493 | 13625399 | ID=Msa1277820-mRNA-1:exon:5365;Parent=Msa1277820-mRNA-1 |
| chr8_3 | exon | 13625615 | 13625715 | 13625615 | ID=Msa1277820-mRNA-1:exon:5366;Parent=Msa1277820-mRNA-1 |
| chr8_3 | exon | 13625809 | 13625944 | 13625809 | ID=Msa1277820-mRNA-1:exon:5367;Parent=Msa1277820-mRNA-1 |
| chr8_3 | CDS | 13624278 | 13624336 | 13624278 | ID=Msa1277820-mRNA-1:cds;Parent=Msa1277820-mRNA-1 |
| chr8_3 | CDS | 13624426 | 13624594 | 13624426 | ID=Msa1277820-mRNA-1:cds;Parent=Msa1277820-mRNA-1 |
| chr8_3 | CDS | 13624689 | 13624753 | 13624689 | ID=Msa1277820-mRNA-1:cds;Parent=Msa1277820-mRNA-1 |
| chr8_3 | CDS | 13625399 | 13625493 | 13625399 | ID=Msa1277820-mRNA-1:cds;Parent=Msa1277820-mRNA-1 |
| chr8_3 | CDS | 13625615 | 13625715 | 13625615 | ID=Msa1277820-mRNA-1:cds;Parent=Msa1277820-mRNA-1 |
| chr8_3 | CDS | 13625809 | 13625871 | 13625809 | ID=Msa1277820-mRNA-1:cds;Parent=Msa1277820-mRNA-1 |
| chr8_3 | three_prime_UTR | 13625872 | 13625944 | 13625872 | ID=Msa1277820-mRNA-1:three_prime_utr;Parent=Msa1277820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
