AlfalfaGEDB | Msa1279110

M. sativa cultivar zhongmu-4 / Msa1279110

KEGG: -
GO: -
PFAM: PF02492.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1279110	XP_013446278.1	80.046	431	19	6	1	388	1	407	0.0	642

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1279110	sp\|Q9BRT8\|CBWD1_HUMAN	33.511	376	189	9	42	383	25	373	5.70e-57	194

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1279110	A0A072U3B1	80.046	431	19	6	1	388	1	407	0.0	642

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0713070	Msa1279110	0.927568	9.796527e-92	-8.615850e-47
Msa1199860	Msa1279110	0.831400	1.705901e-55	-8.615850e-47
Msa1252800	Msa1279110	0.906294	1.730271e-80	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1279110	MtrunA17_Chr8g0369371	91.667	228	11	3	1	221	1	227	1.77e-147	417
Msa1279110	MtrunA17_Chr1g0212851	50.258	388	114	4	56	388	86	449	1.48e-114	341
Msa1279110	MtrunA17_Chr8g0369381	76.730	159	1	2	266	388	1	159	6.99e-78	237
Msa1279110	MtrunA17_Chr5g0418911	32.891	377	175	7	51	385	22	362	1.90e-53	181

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1279110	AT1G80480.1	50.360	417	122	7	33	388	52	444	1.02e-118	352
Msa1279110	AT1G15730.1	45.786	439	146	6	18	388	34	448	3.13e-114	340
Msa1279110	AT1G26520.1	33.239	355	186	7	59	386	42	372	2.53e-53	181

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Find 89 sgRNAs with CRISPR-Local

Find 463 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAAGTAGCACCTTTC+CGG	0.251113	8_3:+15888335	None:intergenic
AAACCGGTAATGATTGTAGC+TGG	0.501976	8_3:+15888366	None:intergenic
AAAGTTTCAATAACAGGGGC+TGG	0.476071	8_3:+15886685	None:intergenic
AAATGCTGTTGGAGTTGGTT+AGG	0.413967	8_3:-15887234	Msa1279110:CDS
AACAGAAGCTTCTTCGCCAT+GGG	0.534873	8_3:+15888401	None:intergenic
AATGTATCTACAGAACACAA+AGG	0.658242	8_3:-15883459	Msa1279110:intron
AATTGTTGTCAGCATATCAA+TGG	0.505862	8_3:-15885421	Msa1279110:intron
ACCAAGATTTGTGGTCAATG+AGG	0.603516	8_3:-15886566	Msa1279110:CDS
ACTTCTATTATGGAAGTTTC+AGG	0.219627	8_3:-15888446	Msa1279110:CDS
AGAAGCTTCTTCGCCATGGG+TGG	0.585864	8_3:+15888404	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATTGAACAGTTTGGAAAA+GGG	+	chr8_3:15881916-15881935	None:intergenic	30.0%
ATGATTGAACAGTTTGGAAA+AGG	+	chr8_3:15881917-15881936	None:intergenic	30.0%
ACTTCTATTATGGAAGTTTC+AGG	-	chr8_3:15881973-15881992	Msa1279110:CDS	30.0%
AAAATAAAGTAGCACCTTTC+CGG	+	chr8_3:15882087-15882106	None:intergenic	30.0%
AACACAACTTCTATGATTGA+TGG	-	chr8_3:15882246-15882265	Msa1279110:intron	30.0%
AACCTATGAAAACAAACCAT+CGG	-	chr8_3:15882858-15882877	Msa1279110:intron	30.0%
GACATTATCATGGTCAATAA+TGG	-	chr8_3:15883127-15883146	Msa1279110:intron	30.0%
AGATCTAGTTAAAATGCTGT+TGG	-	chr8_3:15883174-15883193	Msa1279110:intron	30.0%
CTAAAGCTTCCAAAAAAAGT+TGG	+	chr8_3:15883588-15883607	None:intergenic	30.0%
AGTTTCTGAGTATGTTAAAC+TGG	-	chr8_3:15883772-15883791	Msa1279110:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	15881876	15888565	15881876	ID=Msa1279110;Name=Msa1279110
chr8_3	mRNA	15881876	15888565	15881876	ID=Msa1279110-mRNA-1;Parent=Msa1279110;Name=Msa1279110-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0\|0.22\|0.2\|0.9\|1\|1\|10\|51\|388
chr8_3	exon	15881876	15882064	15881876	ID=Msa1279110-mRNA-1:exon:6152;Parent=Msa1279110-mRNA-1
chr8_3	exon	15883380	15883468	15883380	ID=Msa1279110-mRNA-1:exon:6151;Parent=Msa1279110-mRNA-1
chr8_3	exon	15885141	15885205	15885141	ID=Msa1279110-mRNA-1:exon:6150;Parent=Msa1279110-mRNA-1
chr8_3	exon	15885340	15885431	15885340	ID=Msa1279110-mRNA-1:exon:6149;Parent=Msa1279110-mRNA-1
chr8_3	exon	15885686	15885754	15885686	ID=Msa1279110-mRNA-1:exon:6148;Parent=Msa1279110-mRNA-1
chr8_3	exon	15886351	15886401	15886351	ID=Msa1279110-mRNA-1:exon:6147;Parent=Msa1279110-mRNA-1
chr8_3	exon	15886522	15886718	15886522	ID=Msa1279110-mRNA-1:exon:6146;Parent=Msa1279110-mRNA-1
chr8_3	exon	15887191	15887374	15887191	ID=Msa1279110-mRNA-1:exon:6145;Parent=Msa1279110-mRNA-1
chr8_3	exon	15887735	15887800	15887735	ID=Msa1279110-mRNA-1:exon:6144;Parent=Msa1279110-mRNA-1
chr8_3	exon	15888350	15888565	15888350	ID=Msa1279110-mRNA-1:exon:6143;Parent=Msa1279110-mRNA-1
chr8_3	CDS	15888350	15888565	15888350	ID=Msa1279110-mRNA-1:cds;Parent=Msa1279110-mRNA-1
chr8_3	CDS	15887735	15887800	15887735	ID=Msa1279110-mRNA-1:cds;Parent=Msa1279110-mRNA-1
chr8_3	CDS	15887191	15887374	15887191	ID=Msa1279110-mRNA-1:cds;Parent=Msa1279110-mRNA-1
chr8_3	CDS	15886522	15886718	15886522	ID=Msa1279110-mRNA-1:cds;Parent=Msa1279110-mRNA-1
chr8_3	CDS	15886351	15886401	15886351	ID=Msa1279110-mRNA-1:cds;Parent=Msa1279110-mRNA-1
chr8_3	CDS	15885686	15885754	15885686	ID=Msa1279110-mRNA-1:cds;Parent=Msa1279110-mRNA-1
chr8_3	CDS	15885340	15885431	15885340	ID=Msa1279110-mRNA-1:cds;Parent=Msa1279110-mRNA-1
chr8_3	CDS	15885141	15885205	15885141	ID=Msa1279110-mRNA-1:cds;Parent=Msa1279110-mRNA-1
chr8_3	CDS	15883380	15883468	15883380	ID=Msa1279110-mRNA-1:cds;Parent=Msa1279110-mRNA-1
chr8_3	CDS	15881927	15882064	15881927	ID=Msa1279110-mRNA-1:cds;Parent=Msa1279110-mRNA-1
chr8_3	three_prime_UTR	15881876	15881926	15881876	ID=Msa1279110-mRNA-1:three_prime_utr;Parent=Msa1279110-mRNA-1

Gene Sequence

>Msa1279110

ATGAAGAGATACATGACTCTAGCAAATTCCGTCAAAACCCTTTTCCAAACTGTTCAATCATCATCCCTTCAACTCCGTTCCAATTTCCATAATAAGAACTTCTATTATGGAAGTTTCAGGTACATTTCCTCTGCTCCAACCACCCATGGCGAAGAAGCTTCTGTTGATAATCGCGTTCCAGCTACAATCATTACCGGTTTTCTCGGCTCCGGAAAGACCACTCTTCTGAATCATATTCTCACATCCCAACATGGCAAGCGGATAGCTGTCATTGAAAATGAGTTTGGTGAGGTTGATATTGATGGATCACTGGTTGCTAGTCATTCTTCTGTGAATGGTGAAGACATTATCATGGTCAATAATGGCTGCCTATGCTGCACTGTGCGAGGAGATCTAGTTAAAATGCTGTTGGAGTTGGTTAGGAAGAAAAGAGACAAATTTGATCACATTGTTATTGAAACGACAGGTCTTGCAAAACCAGCCCCTGTTATTGAAACTTTTTTCAGCGATGAACTAGTTTCTGAGTATGTTAAACTGGATGGGGTTGTGACTTTAGTTGACTGCAAGCATGCCATGCAACATTTGAATGAGGTGAAACCAAGATTTGTGGTCAATGAGGCAGTTGAACAAGTTGCATATGCTGACCGAATTATTTTGAACAAGATAGATTTGGTTACTGAATCTGAGTTAAAGATATTGACCAAGAAAATAAAGATCTTCCAATATGAGTATAATAGTTCTGTTGTTTTGGACTGCATTATAATTCTTGTTTTTTGGCAGAAGCATATCAATGGAATGGCACAAATTAAGCAAGCTAAATTTGGATCTGTTGACATAGACTTTGTTCTTGGTGTGGGAGGATATGATATTCAGAGAATCGAAGCTGAGGTAGAAGGAGAATGTCCCTCTACAGCAAGCCACCCAGATGACTGTGGACATGAACACAAAGGGCATCATCATGATCACGTGCATGATTCTGCTGTCTCTAGTGTCAGCATTGTTGCGGAGGGAACTCTTGATCGTGATGAGGGGGTGCATTCCATGTTGGATGACAGCCCAGGAAAAACATGGCAACCCAACGAAAAGAAGATAAATAAGCTTGTGTTCATTGGAAGGAATTTGGATGAAACTGCCCTCAGAAAAGGCTTCAAAGGCTGTTTAGTCTAG

Protein sequence

>Msa1279110

MKRYMTLANSVKTLFQTVQSSSLQLRSNFHNKNFYYGSFRYISSAPTTHGEEASVDNRVPATIITGFLGSGKTTLLNHILTSQHGKRIAVIENEFGEVDIDGSLVASHSSVNGEDIIMVNNGCLCCTVRGDLVKMLLELVRKKRDKFDHIVIETTGLAKPAPVIETFFSDELVSEYVKLDGVVTLVDCKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTESELKILTKKIKIFQYEYNSSVVLDCIIILVFWQKHINGMAQIKQAKFGSVDIDFVLGVGGYDIQRIEAEVEGECPSTASHPDDCGHEHKGHHHDHVHDSAVSSVSIVAEGTLDRDEGVHSMLDDSPGKTWQPNEKKINKLVFIGRNLDETALRKGFKGCLV*