Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713070 | XP_013446278.1 | 87.935 | 431 | 20 | 5 | 1 | 423 | 1 | 407 | 0.0 | 730 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713070 | sp|Q9BRT8|CBWD1_HUMAN | 32.995 | 394 | 202 | 9 | 42 | 418 | 25 | 373 | 3.85e-63 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713070 | A0A072U3B1 | 87.935 | 431 | 20 | 5 | 1 | 423 | 1 | 407 | 0.0 | 730 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070700 | Msa0713070 | 0.814282 | 1.668070e-51 | -8.615850e-47 |
| Msa0118590 | Msa0713070 | 0.806057 | 9.895756e-50 | -8.615850e-47 |
| Msa0713070 | Msa1160590 | 0.803522 | 3.348768e-49 | -8.615850e-47 |
| Msa0713070 | Msa1181330 | 0.800751 | 1.244093e-48 | -8.615850e-47 |
| Msa0713070 | Msa1199860 | 0.843019 | 1.812113e-58 | -8.615850e-47 |
| Msa0713070 | Msa1252800 | 0.934465 | 3.874739e-96 | -8.615850e-47 |
| Msa0713070 | Msa1279110 | 0.927568 | 9.796527e-92 | -8.615850e-47 |
| Msa0139350 | Msa0713070 | 0.809684 | 1.675014e-50 | -8.615850e-47 |
| Msa0144370 | Msa0713070 | 0.821491 | 3.925495e-53 | -8.615850e-47 |
| Msa0165660 | Msa0713070 | 0.805643 | 1.209183e-49 | -8.615850e-47 |
| Msa0411420 | Msa0713070 | 0.803970 | 2.703105e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713070 | MtrunA17_Chr8g0369371 | 91.667 | 228 | 11 | 3 | 1 | 221 | 1 | 227 | 5.74e-147 | 417 |
| Msa0713070 | MtrunA17_Chr1g0212851 | 54.639 | 388 | 132 | 3 | 56 | 423 | 86 | 449 | 6.35e-136 | 397 |
| Msa0713070 | MtrunA17_Chr8g0369381 | 98.113 | 159 | 2 | 1 | 266 | 423 | 1 | 159 | 1.36e-111 | 324 |
| Msa0713070 | MtrunA17_Chr5g0418911 | 36.870 | 377 | 195 | 7 | 51 | 420 | 22 | 362 | 4.05e-69 | 223 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713070 | AT1G80480.1 | 52.125 | 447 | 158 | 8 | 3 | 423 | 28 | 444 | 1.08e-139 | 407 |
| Msa0713070 | AT1G15730.1 | 49.431 | 439 | 165 | 5 | 18 | 423 | 34 | 448 | 1.09e-134 | 394 |
| Msa0713070 | AT1G26520.1 | 35.405 | 370 | 193 | 7 | 59 | 421 | 42 | 372 | 4.42e-69 | 223 |
Find 101 sgRNAs with CRISPR-Local
Find 464 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTTCTTATTATGGAAAT+TGG | 0.158974 | 5_1:+4956256 | None:intergenic |
| CAAATTAAGCAAGCTAAATT+TGG | 0.169496 | 5_1:-4953183 | Msa0713070:CDS |
| CATAATAAGAACTTCTATTA+TGG | 0.204148 | 5_1:-4956248 | Msa0713070:CDS |
| ACTTCTATTATGGAAGTTTC+AGG | 0.219627 | 5_1:-4956238 | Msa0713070:CDS |
| CGAACAACGATATGTGTTTC+AGG | 0.224645 | 5_1:-4949961 | Msa0713070:intron |
| CATAATAGAAGTTCTTATTA+TGG | 0.232184 | 5_1:+4956249 | None:intergenic |
| AAAATAAAGTAGCACCTTTC+CGG | 0.251113 | 5_1:+4956127 | None:intergenic |
| GTATAATAGTTCTGTTGTTT+TGG | 0.291165 | 5_1:-4953510 | Msa0713070:CDS |
| GTTGACATAGACTTTGTTCT+TGG | 0.292756 | 5_1:-4953156 | Msa0713070:CDS |
| ATAAATAAGTTTGTGTTCAT+TGG | 0.307055 | 5_1:-4949770 | Msa0713070:CDS |
| TGTGTTCATTGGAAGGAATT+TGG | 0.339926 | 5_1:-4949759 | Msa0713070:CDS |
| GCCTCATTGACCACAAATCT+TGG | 0.344694 | 5_1:+4954357 | None:intergenic |
| GACATTATCATGGTCAATAA+TGG | 0.345998 | 5_1:-4955083 | Msa0713070:CDS |
| TGAGAGATTGGTTGAAGAAA+AGG | 0.358286 | 5_1:-4950030 | Msa0713070:CDS |
| TTTGGTGAGGTTGATATTGA+TGG | 0.359152 | 5_1:-4955143 | Msa0713070:CDS |
| TTGCCTTGTTCAAAATAATT+CGG | 0.361312 | 5_1:+4954310 | None:intergenic |
| AGTTTCTGAGTATGTTAAAC+TGG | 0.363084 | 5_1:-4954439 | Msa0713070:CDS |
| ATGATTGAACAGTTTGGAAA+AGG | 0.370303 | 5_1:+4956297 | None:intergenic |
| AGCTATCCGCTTGCCATGTT+GGG | 0.375881 | 5_1:+4955542 | None:intergenic |
| TCGGGCGGTGACTGTGGGTG+TGG | 0.376839 | 5_1:+4949665 | None:intergenic |
| CAGAACTATTATACTCATAT+TGG | 0.376886 | 5_1:+4953519 | None:intergenic |
| TGAAGATTGGCTTGAGAGAT+TGG | 0.396748 | 5_1:-4950042 | Msa0713070:CDS |
| GTACCATGTCCACAGTCATC+TGG | 0.405192 | 5_1:+4952929 | None:intergenic |
| AAATGCTGTTGGAGTTGGTT+AGG | 0.413967 | 5_1:-4955025 | Msa0713070:CDS |
| GATATTGACCAAGAAAATAA+AGG | 0.416680 | 5_1:-4954142 | Msa0713070:intron |
| GTTCCAGCTACAATCATTAC+CGG | 0.419776 | 5_1:-4956161 | Msa0713070:CDS |
| GATGAAACTGCCCTCAGAAA+AGG | 0.437172 | 5_1:-4949737 | Msa0713070:CDS |
| CTGAGTATGTTAAACTGGAT+GGG | 0.443361 | 5_1:-4954434 | Msa0713070:CDS |
| TGATTGAACAGTTTGGAAAA+GGG | 0.447164 | 5_1:+4956298 | None:intergenic |
| AGAATCGAAGCTGAGGTAGA+AGG | 0.449213 | 5_1:-4952977 | Msa0713070:CDS |
| TATACTTCGGGCGGTGACTG+TGG | 0.452949 | 5_1:+4949659 | None:intergenic |
| CAGCTATCCGCTTGCCATGT+TGG | 0.454491 | 5_1:+4955541 | None:intergenic |
| AGACACCTTTCATTCTGTAT+AGG | 0.455560 | 5_1:+4950000 | None:intergenic |
| GGGATGATGATTGAACAGTT+TGG | 0.457942 | 5_1:+4956291 | None:intergenic |
| ATCTGGGTGGCTTGCTGTAG+AGG | 0.460046 | 5_1:+4952946 | None:intergenic |
| GGAAATTGGAACGGAGTTGA+AGG | 0.461297 | 5_1:+4956270 | None:intergenic |
| GAGAGATTGGTTGAAGAAAA+GGG | 0.461361 | 5_1:-4950029 | Msa0713070:CDS |
| TAGTCTAGTATTTAAAATGC+AGG | 0.465423 | 5_1:-4949700 | Msa0713070:exon |
| GCTAGTCATTCTTCTGTGAA+TGG | 0.465790 | 5_1:-4955110 | Msa0713070:CDS |
| TCTGAGTATGTTAAACTGGA+TGG | 0.474114 | 5_1:-4954435 | Msa0713070:CDS |
| CACATTGTTATTGAAACGAC+AGG | 0.475915 | 5_1:-4954981 | Msa0713070:intron |
| AAAGTTTCAATAACAGGGGC+TGG | 0.476071 | 5_1:+4954477 | None:intergenic |
| CTGAAACACATATCGTTGTT+CGG | 0.476772 | 5_1:+4949962 | None:intergenic |
| AGTTAAAATGCTGTTGGAGT+TGG | 0.477006 | 5_1:-4955030 | Msa0713070:CDS |
| TGGTGGTTAAGGTTGAAGAT+TGG | 0.477272 | 5_1:-4950055 | Msa0713070:intron |
| ATAAGTTTGTGTTCATTGGA+AGG | 0.482316 | 5_1:-4949766 | Msa0713070:CDS |
| GACTTTGTTCTTGGTGTGGG+AGG | 0.487525 | 5_1:-4953147 | Msa0713070:CDS |
| CTTTCCGGAGCCGAGAAAAC+CGG | 0.492702 | 5_1:+4956142 | None:intergenic |
| CAACAGAAGCTTCTTCGCCA+TGG | 0.493301 | 5_1:+4956192 | None:intergenic |
| CACCTCATTCAAATGTTGCA+TGG | 0.496351 | 5_1:+4954383 | None:intergenic |
| ATAGACTTTGTTCTTGGTGT+GGG | 0.501973 | 5_1:-4953150 | Msa0713070:CDS |
| AAACCGGTAATGATTGTAGC+TGG | 0.501976 | 5_1:+4956158 | None:intergenic |
| CGGGCGGTGACTGTGGGTGT+GGG | 0.502952 | 5_1:+4949666 | None:intergenic |
| AATTGTTGTCAGCATATCAA+TGG | 0.505862 | 5_1:-4953213 | Msa0713070:intron |
| GCCCTCAGAAAAGGCTTCAA+AGG | 0.510234 | 5_1:-4949728 | Msa0713070:CDS |
| ATACAGAATGAAAGGTGTCT+TGG | 0.515270 | 5_1:-4949997 | Msa0713070:CDS |
| GCCATGGGTGGTTGGAGCAG+AGG | 0.518040 | 5_1:+4956208 | None:intergenic |
| TACCATGTCCACAGTCATCT+GGG | 0.525702 | 5_1:+4952930 | None:intergenic |
| TCCTCTGCTCCAACCACCCA+TGG | 0.528036 | 5_1:-4956209 | Msa0713070:CDS |
| GCTTCTTCGCCATGGGTGGT+TGG | 0.530949 | 5_1:+4956200 | None:intergenic |
| AACAGAAGCTTCTTCGCCAT+GGG | 0.534873 | 5_1:+4956193 | None:intergenic |
| AGATCTAGTTAAAATGCTGT+TGG | 0.540723 | 5_1:-4955036 | Msa0713070:CDS |
| CATAGACTTTGTTCTTGGTG+TGG | 0.540782 | 5_1:-4953151 | Msa0713070:CDS |
| TCCTGGGCTGTCATCCAACA+TGG | 0.541582 | 5_1:+4949820 | None:intergenic |
| GGTTGATATTGATGGATCAC+TGG | 0.543342 | 5_1:-4955135 | Msa0713070:CDS |
| GATAGCTGTCATTGAAAATG+AGG | 0.545290 | 5_1:-4955526 | Msa0713070:intron |
| TCTGGGTGGCTTGCTGTAGA+GGG | 0.549262 | 5_1:+4952947 | None:intergenic |
| TGAGTATGTTAAACTGGATG+GGG | 0.549852 | 5_1:-4954433 | Msa0713070:CDS |
| CTCCTCGCACAGTGCAGCAT+AGG | 0.551587 | 5_1:+4955057 | None:intergenic |
| AGTCTAGTATTTAAAATGCA+GGG | 0.552617 | 5_1:-4949699 | Msa0713070:exon |
| ATACTTCGGGCGGTGACTGT+GGG | 0.555241 | 5_1:+4949660 | None:intergenic |
| TCTTATTATGGAAATTGGAA+CGG | 0.556311 | 5_1:+4956261 | None:intergenic |
| CACCCAGATGACTGTGGACA+TGG | 0.556680 | 5_1:-4952932 | Msa0713070:intron |
| ATTGGTTGAAGAAAAGGGAG+AGG | 0.560256 | 5_1:-4950024 | Msa0713070:CDS |
| TGCCTATGCTGCACTGTGCG+AGG | 0.562778 | 5_1:-4955059 | Msa0713070:CDS |
| CTCTAGTGTCAGCATTGTTG+CGG | 0.564690 | 5_1:-4951192 | Msa0713070:CDS |
| AATGAAAGGTGTCTTGGCAG+TGG | 0.569935 | 5_1:-4949991 | Msa0713070:CDS |
| ATGTATCTACAGAACACAAA+GGG | 0.575635 | 5_1:-4951247 | Msa0713070:intron |
| GAAATTGGAACGGAGTTGAA+GGG | 0.576416 | 5_1:+4956271 | None:intergenic |
| TAGTGTCAGCATTGTTGCGG+AGG | 0.580263 | 5_1:-4951189 | Msa0713070:CDS |
| TTGTCAGCATATCAATGGAA+TGG | 0.580500 | 5_1:-4953208 | Msa0713070:intron |
| TCCATGTTGGATGACAGCCC+AGG | 0.585563 | 5_1:-4949821 | Msa0713070:CDS |
| AGAAGCTTCTTCGCCATGGG+TGG | 0.585864 | 5_1:+4956196 | None:intergenic |
| CTGTTGTATGTAGTTTGGTG+AGG | 0.586467 | 5_1:-4955156 | Msa0713070:intron |
| CATATTCTCACATCCCAACA+TGG | 0.594416 | 5_1:-4955555 | Msa0713070:CDS |
| TGGGAGGATATGATATTCAG+AGG | 0.595050 | 5_1:-4953131 | Msa0713070:intron |
| GAGGACCTATACAGAATGAA+AGG | 0.595825 | 5_1:-4950005 | Msa0713070:CDS |
| ACCAAGATTTGTGGTCAATG+AGG | 0.603516 | 5_1:-4954358 | Msa0713070:CDS |
| TGAGGTGAAACCAAGATTTG+TGG | 0.618768 | 5_1:-4954367 | Msa0713070:CDS |
| AAAGGTGTCTTGGCAGTGGA+TGG | 0.621292 | 5_1:-4949987 | Msa0713070:CDS |
| AGTGTCAGCATTGTTGCGGA+GGG | 0.630144 | 5_1:-4951188 | Msa0713070:CDS |
| GAATGGTGAAGACATTATCA+TGG | 0.630318 | 5_1:-4955093 | Msa0713070:CDS |
| TCACATCCCAACATGGCAAG+CGG | 0.641762 | 5_1:-4955548 | Msa0713070:CDS |
| TGCCATGCAACATTTGAATG+AGG | 0.646050 | 5_1:-4954385 | Msa0713070:CDS |
| CTTCTGAAGTATACTTCGGG+CGG | 0.647830 | 5_1:+4949650 | None:intergenic |
| GAGAATATGATTCAGAAGAG+TGG | 0.653863 | 5_1:+4955569 | None:intergenic |
| AATGTATCTACAGAACACAA+AGG | 0.658242 | 5_1:-4951248 | Msa0713070:intron |
| GGGAACTCTTGATCGTGATG+AGG | 0.670033 | 5_1:-4951168 | Msa0713070:intron |
| ATATTGCAGAATCGAAGCTG+AGG | 0.670166 | 5_1:-4952984 | Msa0713070:intron |
| GCAAGCCACCCAGATGACTG+TGG | 0.685211 | 5_1:-4952938 | Msa0713070:CDS |
| CATGTCCACAGTCATCTGGG+TGG | 0.712242 | 5_1:+4952933 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATTATTCAATGAAA+AGG | - | chr5_1:4951217-4951236 | Msa0713070:CDS | 10.0% |
| !! | AAAAAATTATTCAATGAAAA+GGG | - | chr5_1:4951218-4951237 | Msa0713070:CDS | 10.0% |
| !! | AACAAATCAAAATAATAATA+AGG | - | chr5_1:4953528-4953547 | Msa0713070:intron | 10.0% |
| !! | ACAAATCAAAATAATAATAA+GGG | - | chr5_1:4953529-4953548 | Msa0713070:intron | 10.0% |
| !! | AATCAAATAAAATAAAACAT+AGG | + | chr5_1:4954583-4954602 | None:intergenic | 10.0% |
| !!! | TTTATTTTATTTGATTTCTT+TGG | - | chr5_1:4954587-4954606 | Msa0713070:intron | 10.0% |
| !!! | TGTTATTATTTCAAAATTTT+AGG | + | chr5_1:4954631-4954650 | None:intergenic | 10.0% |
| !! | AAAATATAAAAAAAATACTC+TGG | + | chr5_1:4954700-4954719 | None:intergenic | 10.0% |
| !! | TCAATATATAAATCAAAATA+GGG | + | chr5_1:4955046-4955065 | None:intergenic | 10.0% |
| !!! | ATCGAATGTTATATTTTTAT+TGG | - | chr5_1:4950315-4950334 | Msa0713070:intron | 15.0% |
| !!! | TATTCGATTGTTTTAAATAT+CGG | + | chr5_1:4951450-4951469 | None:intergenic | 15.0% |
| !!! | TTATTTTTCTTAATCTAACT+AGG | - | chr5_1:4951910-4951929 | Msa0713070:intron | 15.0% |
| !! | TGATATAATAAACAATATAC+AGG | + | chr5_1:4952695-4952714 | None:intergenic | 15.0% |
| !!! | AGATATTTCTTTTTAATTCA+TGG | - | chr5_1:4952762-4952781 | Msa0713070:intron | 15.0% |
| !!! | AAATAGAAATTTGTTGTTAA+CGG | - | chr5_1:4953180-4953199 | Msa0713070:CDS | 15.0% |
| !! | AAGTAGTTATGATTATTAAA+CGG | + | chr5_1:4953362-4953381 | None:intergenic | 15.0% |
| !!! | TTTTGATTTGTTCTTAATTT+AGG | + | chr5_1:4953520-4953539 | None:intergenic | 15.0% |
| !! | CTCAATATATAAATCAAAAT+AGG | + | chr5_1:4955047-4955066 | None:intergenic | 15.0% |
| !!! | ATATTTTATATCATTAACCT+TGG | - | chr5_1:4955526-4955545 | Msa0713070:intron | 15.0% |
| !! | CATAATAGAAGTTCTTATTA+TGG | + | chr5_1:4949752-4949771 | None:intergenic | 20.0% |
| !! | CATAATAAGAACTTCTATTA+TGG | - | chr5_1:4949750-4949769 | Msa0713070:CDS | 20.0% |
| !! | GAAAAATAACTTACATAAGT+AGG | - | chr5_1:4949908-4949927 | Msa0713070:intron | 20.0% |
| !! | CCTTAAGTTATAAACTATTA+GGG | + | chr5_1:4949984-4950003 | None:intergenic | 20.0% |
| !! | ACCTTAAGTTATAAACTATT+AGG | + | chr5_1:4949985-4950004 | None:intergenic | 20.0% |
| !! | CATGTAAATAAAATGATTAC+TGG | + | chr5_1:4950148-4950167 | None:intergenic | 20.0% |
| !!! | TTTTTTCTAATATTCAAGAC+CGG | - | chr5_1:4950268-4950287 | Msa0713070:intron | 20.0% |
| !!! | TAGAACTTATAGAATTTTTC+CGG | + | chr5_1:4950290-4950309 | None:intergenic | 20.0% |
| !!! | TAACAAATTTTGAATGGTAT+TGG | - | chr5_1:4950566-4950585 | Msa0713070:intron | 20.0% |
| !!! | AGGATGTGTTTTTAATAATA+TGG | - | chr5_1:4950791-4950810 | Msa0713070:intron | 20.0% |
| !!! | GGATGTGTTTTTAATAATAT+GGG | - | chr5_1:4950792-4950811 | Msa0713070:intron | 20.0% |
| !! | CAGTAATTTATGATATTATC+TGG | - | chr5_1:4950819-4950838 | Msa0713070:intron | 20.0% |
| !! | ATATTAGTAACTTCACAATT+TGG | + | chr5_1:4951142-4951161 | None:intergenic | 20.0% |
| !! | TGAAAAAAGTTTCAATAACA+GGG | + | chr5_1:4951529-4951548 | None:intergenic | 20.0% |
| !!! | TTTACATTGGTAGTAAAATT+CGG | + | chr5_1:4952325-4952344 | None:intergenic | 20.0% |
| !!! | ATCAAGGATTAATAGTTTTA+TGG | - | chr5_1:4952390-4952409 | Msa0713070:intron | 20.0% |
| !!! | GCATTATAATTCTTGTTTTT+TGG | - | chr5_1:4952514-4952533 | Msa0713070:intron | 20.0% |
| !! | TCTTCTTAAAATACTAAAGT+AGG | - | chr5_1:4953276-4953295 | Msa0713070:intron | 20.0% |
| !! | GATATTAATCCCTATTTATA+GGG | - | chr5_1:4953479-4953498 | Msa0713070:CDS | 20.0% |
| !! | AATCAAAATAATAATAAGGG+AGG | - | chr5_1:4953532-4953551 | Msa0713070:intron | 20.0% |
| !! | TTAAGTCAGTTGTAATAAAA+GGG | - | chr5_1:4954329-4954348 | Msa0713070:CDS | 20.0% |
| !! | GTATTATTGATGGAAAATAA+GGG | + | chr5_1:4954477-4954496 | None:intergenic | 20.0% |
| !! | AGTATTATTGATGGAAAATA+AGG | + | chr5_1:4954478-4954497 | None:intergenic | 20.0% |
| !!! | GCAATAATTTGTTTTTTTAG+AGG | - | chr5_1:4954858-4954877 | Msa0713070:intron | 20.0% |
| !!! | GTAAGACAATATTTTGTAAA+TGG | + | chr5_1:4954908-4954927 | None:intergenic | 20.0% |
| !!! | TTTCTAAATGGTTTTGTTAA+TGG | - | chr5_1:4955134-4955153 | Msa0713070:CDS | 20.0% |
| !! | ACAATGTGTAGTATAAATTA+TGG | - | chr5_1:4955159-4955178 | Msa0713070:intron | 20.0% |
| !!! | AAAGGTTTGAAATTACAAAT+AGG | + | chr5_1:4956100-4956119 | None:intergenic | 20.0% |
| !!! | TTATTTATCTTCTTTTCGTT+GGG | + | chr5_1:4956216-4956235 | None:intergenic | 20.0% |
| !! | ATAAATAAGTTTGTGTTCAT+TGG | - | chr5_1:4956228-4956247 | Msa0713070:CDS | 20.0% |
| ! | TCTTATTATGGAAATTGGAA+CGG | + | chr5_1:4949740-4949759 | None:intergenic | 25.0% |
| ! | GAAGTTCTTATTATGGAAAT+TGG | + | chr5_1:4949745-4949764 | None:intergenic | 25.0% |
| !! | AAATTTTGTGTTTCCAAACA+AGG | - | chr5_1:4949958-4949977 | Msa0713070:intron | 25.0% |
| ! | CCCTAATAGTTTATAACTTA+AGG | - | chr5_1:4949981-4950000 | Msa0713070:CDS | 25.0% |
| ! | TTGTTAGTTGCTGAAATAAA+AGG | + | chr5_1:4950552-4950571 | None:intergenic | 25.0% |
| !! | AGCAACTAACAAATTTTGAA+TGG | - | chr5_1:4950560-4950579 | Msa0713070:intron | 25.0% |
| ! | TATTGTGTTCATTGTAAACA+AGG | - | chr5_1:4950739-4950758 | Msa0713070:intron | 25.0% |
| ! | ATTGTGTTCATTGTAAACAA+GGG | - | chr5_1:4950740-4950759 | Msa0713070:intron | 25.0% |
| !! | TTAAGTTTTTGCAAAACACT+TGG | - | chr5_1:4951253-4951272 | Msa0713070:intron | 25.0% |
| ! | TGACCTTATCTAATTCTAAA+TGG | - | chr5_1:4951286-4951305 | Msa0713070:intron | 25.0% |
| !! | GAACCATTTAGAATTAGATA+AGG | + | chr5_1:4951292-4951311 | None:intergenic | 25.0% |
| !!! | TGTGTTGCTTAAAAATCTTT+AGG | - | chr5_1:4951329-4951348 | Msa0713070:intron | 25.0% |
| !!! | GTGTTGCTTAAAAATCTTTA+GGG | - | chr5_1:4951330-4951349 | Msa0713070:intron | 25.0% |
| !! | TCTCATGCATTTTTAAATGA+TGG | - | chr5_1:4951399-4951418 | Msa0713070:intron | 25.0% |
| ! | GAAAAAAGTTTCAATAACAG+GGG | + | chr5_1:4951528-4951547 | None:intergenic | 25.0% |
| ! | CTGAAAAAAGTTTCAATAAC+AGG | + | chr5_1:4951530-4951549 | None:intergenic | 25.0% |
| !! | TTGCCTTGTTCAAAATAATT+CGG | + | chr5_1:4951691-4951710 | None:intergenic | 25.0% |
| ! | GATATTGACCAAGAAAATAA+AGG | - | chr5_1:4951856-4951875 | Msa0713070:intron | 25.0% |
| !! | TTTTCTTAATCTAACTAGGA+AGG | - | chr5_1:4951914-4951933 | Msa0713070:intron | 25.0% |
| ! | GAAATGTACAAATATGAAAC+CGG | - | chr5_1:4951965-4951984 | Msa0713070:intron | 25.0% |
| ! | AAATGTACAAATATGAAACC+GGG | - | chr5_1:4951966-4951985 | Msa0713070:intron | 25.0% |
| !! | TAACTGATATGGAGTTATTT+TGG | + | chr5_1:4952073-4952092 | None:intergenic | 25.0% |
| ! | GTAAAATTTAATGATGCGAT+TGG | + | chr5_1:4952290-4952309 | None:intergenic | 25.0% |
| !!! | ATTCCAAAACTTTGTTTTCA+CGG | - | chr5_1:4952425-4952444 | Msa0713070:intron | 25.0% |
| ! | CAGAACTATTATACTCATAT+TGG | + | chr5_1:4952482-4952501 | None:intergenic | 25.0% |
| !!! | GTATAATAGTTCTGTTGTTT+TGG | - | chr5_1:4952488-4952507 | Msa0713070:intron | 25.0% |
| ! | TGTATGTACATGTGTATATT+GGG | - | chr5_1:4952617-4952636 | Msa0713070:intron | 25.0% |
| ! | ATCTTTAAGCATGATTTCTA+GGG | + | chr5_1:4952746-4952765 | None:intergenic | 25.0% |
| ! | TATCTTTAAGCATGATTTCT+AGG | + | chr5_1:4952747-4952766 | None:intergenic | 25.0% |
| ! | CAAATTAAGCAAGCTAAATT+TGG | - | chr5_1:4952815-4952834 | Msa0713070:intron | 25.0% |
| ! | TAATTAAGAAAGTGACAACA+AGG | + | chr5_1:4953105-4953124 | None:intergenic | 25.0% |
| ! | TACAAGACTAGATTTCTATA+TGG | + | chr5_1:4953329-4953348 | None:intergenic | 25.0% |
| ! | TGTTGAATTTGTGAGATTTA+AGG | - | chr5_1:4953381-4953400 | Msa0713070:intron | 25.0% |
| !! | TTTGTGAGATTTAAGGTAAA+AGG | - | chr5_1:4953388-4953407 | Msa0713070:intron | 25.0% |
| ! | CGATATTAATCCCTATTTAT+AGG | - | chr5_1:4953478-4953497 | Msa0713070:CDS | 25.0% |
| ! | AAAATAATAATAAGGGAGGA+CGG | - | chr5_1:4953536-4953555 | Msa0713070:intron | 25.0% |
| ! | ACCAAAAACCAAAATGATAT+TGG | - | chr5_1:4954089-4954108 | Msa0713070:intron | 25.0% |
| ! | CCAAAAACCAAAATGATATT+GGG | - | chr5_1:4954090-4954109 | Msa0713070:intron | 25.0% |
| ! | GTTAAGTCAGTTGTAATAAA+AGG | - | chr5_1:4954328-4954347 | Msa0713070:CDS | 25.0% |
| ! | TCTCTATTCTAACAAACTTA+GGG | + | chr5_1:4954390-4954409 | None:intergenic | 25.0% |
| ! | TATAGTTGTGTTTGAATCTT+TGG | - | chr5_1:4954531-4954550 | Msa0713070:intron | 25.0% |
| !! | TATTTTGTAAATGGTCAGAA+GGG | + | chr5_1:4954899-4954918 | None:intergenic | 25.0% |
| !! | ATATTTTGTAAATGGTCAGA+AGG | + | chr5_1:4954900-4954919 | None:intergenic | 25.0% |
| !! | AAATCAAAATAGGGTTGATT+AGG | + | chr5_1:4955037-4955056 | None:intergenic | 25.0% |
| ! | TATATTGAGAAACTAATCCT+TGG | - | chr5_1:4955058-4955077 | Msa0713070:CDS | 25.0% |
| ! | ACTCTTATTGGATTTCTAAA+TGG | - | chr5_1:4955122-4955141 | Msa0713070:CDS | 25.0% |
| ! | TCAAACAAGATGACTTTATT+GGG | + | chr5_1:4955370-4955389 | None:intergenic | 25.0% |
| ! | AATATGTATGTTGTATGAGT+AGG | - | chr5_1:4955491-4955510 | Msa0713070:intron | 25.0% |
| !!! | GTTAATCAGTGATTTTTTTC+TGG | - | chr5_1:4955740-4955759 | Msa0713070:intron | 25.0% |
| ! | ACCATTTAATGTGAAAGTAA+GGG | + | chr5_1:4955927-4955946 | None:intergenic | 25.0% |
| ! | ATTACAAATAGGCAATAGAA+TGG | + | chr5_1:4956089-4956108 | None:intergenic | 25.0% |
| ! | CCTGAAAGTAGTAATAAATA+GGG | + | chr5_1:4956149-4956168 | None:intergenic | 25.0% |
| ! | CCTATTTATTACTACTTTCA+GGG | - | chr5_1:4956147-4956166 | Msa0713070:CDS | 25.0% |
| ! | CTATTTATTACTACTTTCAG+GGG | - | chr5_1:4956148-4956167 | Msa0713070:CDS | 25.0% |
| ! | TATTTATTACTACTTTCAGG+GGG | - | chr5_1:4956149-4956168 | Msa0713070:CDS | 25.0% |
| !! | CTTATTTATCTTCTTTTCGT+TGG | + | chr5_1:4956217-4956236 | None:intergenic | 25.0% |
| !! | TAGTCTAGTATTTAAAATGC+AGG | - | chr5_1:4956298-4956317 | Msa0713070:CDS | 25.0% |
| !! | AGTCTAGTATTTAAAATGCA+GGG | - | chr5_1:4956299-4956318 | Msa0713070:CDS | 25.0% |
| TGATTGAACAGTTTGGAAAA+GGG | + | chr5_1:4949703-4949722 | None:intergenic | 30.0% | |
| ATGATTGAACAGTTTGGAAA+AGG | + | chr5_1:4949704-4949723 | None:intergenic | 30.0% | |
| ACTTCTATTATGGAAGTTTC+AGG | - | chr5_1:4949760-4949779 | Msa0713070:CDS | 30.0% | |
| AAAATAAAGTAGCACCTTTC+CGG | + | chr5_1:4949874-4949893 | None:intergenic | 30.0% | |
| AACACAACTTCTATGATTGA+TGG | - | chr5_1:4950031-4950050 | Msa0713070:CDS | 30.0% | |
| ! | TTACATGCAACAAGTTCTAA+TGG | - | chr5_1:4950161-4950180 | Msa0713070:intron | 30.0% |
| AACCTATGAAAACAAACCAT+CGG | - | chr5_1:4950646-4950665 | Msa0713070:intron | 30.0% | |
| GACATTATCATGGTCAATAA+TGG | - | chr5_1:4950915-4950934 | Msa0713070:intron | 30.0% | |
| AGATCTAGTTAAAATGCTGT+TGG | - | chr5_1:4950962-4950981 | Msa0713070:intron | 30.0% | |
| CTAAAGCTTCCAAAAAAAGT+TGG | + | chr5_1:4951375-4951394 | None:intergenic | 30.0% | |
| ! | TACATTCTTAACTGTTTTGC+AGG | - | chr5_1:4951488-4951507 | Msa0713070:intron | 30.0% |
| AGTTTCTGAGTATGTTAAAC+TGG | - | chr5_1:4951559-4951578 | Msa0713070:intron | 30.0% | |
| !!! | TGACCGAATTATTTTGAACA+AGG | - | chr5_1:4951685-4951704 | Msa0713070:intron | 30.0% |
| ! | CTTTAACTTTGTTTCTCTTG+TGG | - | chr5_1:4951749-4951768 | Msa0713070:intron | 30.0% |
| !!! | GAAACACACCTTTATTTTCT+TGG | + | chr5_1:4951867-4951886 | None:intergenic | 30.0% |
| !!! | ATATGGAGTTATTTTGGTCA+TGG | + | chr5_1:4952067-4952086 | None:intergenic | 30.0% |
| TACTCAGGAAATAACTGATA+TGG | + | chr5_1:4952084-4952103 | None:intergenic | 30.0% | |
| TTAAACAATGCTGCATACTT+GGG | + | chr5_1:4952213-4952232 | None:intergenic | 30.0% | |
| TTTAAACAATGCTGCATACT+TGG | + | chr5_1:4952214-4952233 | None:intergenic | 30.0% | |
| AGTATGCAGCATTGTTTAAA+TGG | - | chr5_1:4952214-4952233 | Msa0713070:intron | 30.0% | |
| !!! | GGAAGGGTTTTTTTTTACAT+TGG | + | chr5_1:4952338-4952357 | None:intergenic | 30.0% |
| TTGATCATTGACCAATTGAA+AGG | + | chr5_1:4952375-4952394 | None:intergenic | 30.0% | |
| TTTCAATTGGTCAATGATCA+AGG | - | chr5_1:4952374-4952393 | Msa0713070:intron | 30.0% | |
| !!! | AATTCTTGTTTTTTGGCAGA+AGG | - | chr5_1:4952521-4952540 | Msa0713070:intron | 30.0% |
| CTGTATGTACATGTGTATAT+TGG | - | chr5_1:4952616-4952635 | Msa0713070:intron | 30.0% | |
| GTATGTACATGTGTATATTG+GGG | - | chr5_1:4952618-4952637 | Msa0713070:intron | 30.0% | |
| AATTGTTGTCAGCATATCAA+TGG | - | chr5_1:4952785-4952804 | Msa0713070:intron | 30.0% | |
| ATATGATATTCAGAGGTAAG+AGG | - | chr5_1:4952874-4952893 | Msa0713070:intron | 30.0% | |
| ! | TAATTTGCAGCAAATACAGA+CGG | + | chr5_1:4952968-4952987 | None:intergenic | 30.0% |
| !!! | ATTTTAAGAAGAGAAGCATC+TGG | + | chr5_1:4953268-4953287 | None:intergenic | 30.0% |
| TCTGTGTATCCCTATAAATA+GGG | + | chr5_1:4953491-4953510 | None:intergenic | 30.0% | |
| !! | AGCTTGTTATAAATATACCC+TGG | - | chr5_1:4953779-4953798 | Msa0713070:intron | 30.0% |
| ! | GTTACGTTTTATCTTTTCCA+GGG | + | chr5_1:4953799-4953818 | None:intergenic | 30.0% |
| ! | TGTTACGTTTTATCTTTTCC+AGG | + | chr5_1:4953800-4953819 | None:intergenic | 30.0% |
| AAGCTTAATCACTTAACAGA+AGG | - | chr5_1:4953969-4953988 | Msa0713070:intron | 30.0% | |
| AACCAAACTGCAATGATATT+AGG | - | chr5_1:4954014-4954033 | Msa0713070:intron | 30.0% | |
| AAAATGAGGCCTTAATTGAA+AGG | - | chr5_1:4954053-4954072 | Msa0713070:intron | 30.0% | |
| !!! | TTTTGGTTTTTGGTTTGATG+TGG | + | chr5_1:4954083-4954102 | None:intergenic | 30.0% |
| !!! | CCCAATATCATTTTGGTTTT+TGG | + | chr5_1:4954093-4954112 | None:intergenic | 30.0% |
| ACTTCAAACAAACAGAGAAA+AGG | - | chr5_1:4954148-4954167 | Msa0713070:CDS | 30.0% | |
| TTAGTCTCATGATGCATTAA+CGG | + | chr5_1:4954201-4954220 | None:intergenic | 30.0% | |
| TTAATGCATCATGAGACTAA+GGG | - | chr5_1:4954201-4954220 | Msa0713070:intron | 30.0% | |
| TATAAACCCTCCATATCTTT+GGG | + | chr5_1:4954227-4954246 | None:intergenic | 30.0% | |
| CTCTCTATTCTAACAAACTT+AGG | + | chr5_1:4954391-4954410 | None:intergenic | 30.0% | |
| AATGTATCTACAGAACACAA+AGG | - | chr5_1:4954750-4954769 | Msa0713070:intron | 30.0% | |
| ATGTATCTACAGAACACAAA+GGG | - | chr5_1:4954751-4954770 | Msa0713070:intron | 30.0% | |
| !!! | TTTTTGTTGATGGCTTTGTT+TGG | - | chr5_1:4954984-4955003 | Msa0713070:CDS | 30.0% |
| TTAGAAATCCAATAAGAGTG+TGG | + | chr5_1:4955121-4955140 | None:intergenic | 30.0% | |
| TGCATTGTATGTAACTTATG+TGG | + | chr5_1:4955261-4955280 | None:intergenic | 30.0% | |
| GTCAAACAAGATGACTTTAT+TGG | + | chr5_1:4955371-4955390 | None:intergenic | 30.0% | |
| CATACATATTTGTGACTTCA+TGG | + | chr5_1:4955481-4955500 | None:intergenic | 30.0% | |
| !!! | GTTAATCGGTGATTTTTTTC+TGG | - | chr5_1:4955881-4955900 | Msa0713070:intron | 30.0% |
| TCCCTTACTTTCACATTAAA+TGG | - | chr5_1:4955923-4955942 | Msa0713070:intron | 30.0% | |
| CACCATTTAATGTGAAAGTA+AGG | + | chr5_1:4955928-4955947 | None:intergenic | 30.0% | |
| CTTACTTTCACATTAAATGG+TGG | - | chr5_1:4955926-4955945 | Msa0713070:intron | 30.0% | |
| TTCACATTAAATGGTGGTTA+AGG | - | chr5_1:4955932-4955951 | Msa0713070:intron | 30.0% | |
| TGAGCAAATTCGAATTCAAA+AGG | + | chr5_1:4956118-4956137 | None:intergenic | 30.0% | |
| CCCTATTTATTACTACTTTC+AGG | - | chr5_1:4956146-4956165 | Msa0713070:CDS | 30.0% | |
| CCCTGAAAGTAGTAATAAAT+AGG | + | chr5_1:4956150-4956169 | None:intergenic | 30.0% | |
| ATAAGTTTGTGTTCATTGGA+AGG | - | chr5_1:4956232-4956251 | Msa0713070:CDS | 30.0% | |
| !! | AGTTTGGAAAAGGGTTTTGA+CGG | + | chr5_1:4949694-4949713 | None:intergenic | 35.0% |
| !!! | ACAATCATTACCGGTTTTCT+CGG | - | chr5_1:4949846-4949865 | Msa0713070:intron | 35.0% |
| !! | TAAACTATTAGGGCCTTGTT+TGG | + | chr5_1:4949974-4949993 | None:intergenic | 35.0% |
| !! | GTGTTGCTTATATTCGAGAT+TGG | + | chr5_1:4950016-4950035 | None:intergenic | 35.0% |
| ! | ATGCAACAAGTTCTAATGGA+GGG | - | chr5_1:4950165-4950184 | Msa0713070:intron | 35.0% |
| GAGAATATGATTCAGAAGAG+TGG | + | chr5_1:4950432-4950451 | None:intergenic | 35.0% | |
| GATAGCTGTCATTGAAAATG+AGG | - | chr5_1:4950472-4950491 | Msa0713070:intron | 35.0% | |
| TGTTCTACACTCAATAACTG+TGG | - | chr5_1:4950504-4950523 | Msa0713070:intron | 35.0% | |
| GTTCTACACTCAATAACTGT+GGG | - | chr5_1:4950505-4950524 | Msa0713070:intron | 35.0% | |
| TTGCTGAAATAAAAGGCTGT+CGG | + | chr5_1:4950545-4950564 | None:intergenic | 35.0% | |
| !!! | TACCGATGGTTTGTTTTCAT+AGG | + | chr5_1:4950651-4950670 | None:intergenic | 35.0% |
| !! | TTTGGTGAGGTTGATATTGA+TGG | - | chr5_1:4950855-4950874 | Msa0713070:intron | 35.0% |
| GAATGGTGAAGACATTATCA+TGG | - | chr5_1:4950905-4950924 | Msa0713070:intron | 35.0% | |
| AGTTAAAATGCTGTTGGAGT+TGG | - | chr5_1:4950968-4950987 | Msa0713070:intron | 35.0% | |
| ! | CACATTGTTATTGAAACGAC+AGG | - | chr5_1:4951017-4951036 | Msa0713070:intron | 35.0% |
| ! | AGATTTTGTGCTTTGTGTAC+TGG | - | chr5_1:4951065-4951084 | Msa0713070:intron | 35.0% |
| ! | GATTTTGTGCTTTGTGTACT+GGG | - | chr5_1:4951066-4951085 | Msa0713070:intron | 35.0% |
| ! | ATTTTGTGCTTTGTGTACTG+GGG | - | chr5_1:4951067-4951086 | Msa0713070:intron | 35.0% |
| TGCCTGAAATTCACTTTGTT+TGG | - | chr5_1:4951164-4951183 | Msa0713070:intron | 35.0% | |
| ! | GCCTGAAATTCACTTTGTTT+GGG | - | chr5_1:4951165-4951184 | Msa0713070:intron | 35.0% |
| TCCCAAACAAAGTGAATTTC+AGG | + | chr5_1:4951169-4951188 | None:intergenic | 35.0% | |
| AAAAGTTGGAGAACCATGAA+GGG | + | chr5_1:4951361-4951380 | None:intergenic | 35.0% | |
| AAAAAGTTGGAGAACCATGA+AGG | + | chr5_1:4951362-4951381 | None:intergenic | 35.0% | |
| !!! | CATGGTTCTCCAACTTTTTT+TGG | - | chr5_1:4951363-4951382 | Msa0713070:intron | 35.0% |
| TCTGAGTATGTTAAACTGGA+TGG | - | chr5_1:4951563-4951582 | Msa0713070:intron | 35.0% | |
| CTGAGTATGTTAAACTGGAT+GGG | - | chr5_1:4951564-4951583 | Msa0713070:intron | 35.0% | |
| TGAGTATGTTAAACTGGATG+GGG | - | chr5_1:4951565-4951584 | Msa0713070:intron | 35.0% | |
| !! | CTTGCTTTTGCAGATAGATT+TGG | - | chr5_1:4951814-4951833 | Msa0713070:intron | 35.0% |
| ACATGTTCATTTCATGAACC+CGG | + | chr5_1:4951987-4952006 | None:intergenic | 35.0% | |
| ! | TGTTCTGAATTACACTACTC+AGG | + | chr5_1:4952099-4952118 | None:intergenic | 35.0% |
| ATTGCAAAAATTCACCTCCA+TGG | - | chr5_1:4952140-4952159 | Msa0713070:intron | 35.0% | |
| !! | ATGCTATCTTGACTTGCTAA+AGG | - | chr5_1:4952175-4952194 | Msa0713070:intron | 35.0% |
| !! | TGCTATCTTGACTTGCTAAA+GGG | - | chr5_1:4952176-4952195 | Msa0713070:intron | 35.0% |
| ATGCAGCATTGTTTAAATGG+TGG | - | chr5_1:4952217-4952236 | Msa0713070:intron | 35.0% | |
| ! | GCATTGTTTAAATGGTGGAA+TGG | - | chr5_1:4952222-4952241 | Msa0713070:intron | 35.0% |
| TGAAAGGCAGTCTTAGAATA+CGG | + | chr5_1:4952359-4952378 | None:intergenic | 35.0% | |
| !! | TTCTAAGACTGCCTTTCAAT+TGG | - | chr5_1:4952361-4952380 | Msa0713070:intron | 35.0% |
| ! | TCACCGTGAAAACAAAGTTT+TGG | + | chr5_1:4952431-4952450 | None:intergenic | 35.0% |
| ACTCATATTGGAAGATCTAC+AGG | + | chr5_1:4952470-4952489 | None:intergenic | 35.0% | |
| TTGTCAGCATATCAATGGAA+TGG | - | chr5_1:4952790-4952809 | Msa0713070:intron | 35.0% | |
| GTTGACATAGACTTTGTTCT+TGG | - | chr5_1:4952842-4952861 | Msa0713070:intron | 35.0% | |
| ! | ATAGACTTTGTTCTTGGTGT+GGG | - | chr5_1:4952848-4952867 | Msa0713070:intron | 35.0% |
| ! | AAGTGACAACAAGGTTCTAA+GGG | + | chr5_1:4953096-4953115 | None:intergenic | 35.0% |
| AAAGTGACAACAAGGTTCTA+AGG | + | chr5_1:4953097-4953116 | None:intergenic | 35.0% | |
| GCAGTCAACTATAACAAGAA+AGG | + | chr5_1:4953139-4953158 | None:intergenic | 35.0% | |
| TTATAGTTGACTGCAGTATG+AGG | - | chr5_1:4953145-4953164 | Msa0713070:CDS | 35.0% | |
| !! | TTTGTTGTTAACGGATCATG+TGG | - | chr5_1:4953189-4953208 | Msa0713070:CDS | 35.0% |
| GTCTGTGTATCCCTATAAAT+AGG | + | chr5_1:4953492-4953511 | None:intergenic | 35.0% | |
| TTTAGTAAGCTTCAGCTTGA+GGG | + | chr5_1:4953760-4953779 | None:intergenic | 35.0% | |
| AAACGTAACAACTGTGACAA+TGG | - | chr5_1:4953810-4953829 | Msa0713070:intron | 35.0% | |
| ATTGGCGTTCTTGATTCTTT+GGG | + | chr5_1:4953895-4953914 | None:intergenic | 35.0% | |
| AATTGGCGTTCTTGATTCTT+TGG | + | chr5_1:4953896-4953915 | None:intergenic | 35.0% | |
| AAGAATCAAGAACGCCAATT+TGG | - | chr5_1:4953896-4953915 | Msa0713070:intron | 35.0% | |
| AGAATCAAGAACGCCAATTT+GGG | - | chr5_1:4953897-4953916 | Msa0713070:intron | 35.0% | |
| ! | TCAATTAAGGCCTCATTTTC+TGG | + | chr5_1:4954052-4954071 | None:intergenic | 35.0% |
| !! | ACAAACAGAGAAAAGGTGTT+AGG | - | chr5_1:4954155-4954174 | Msa0713070:CDS | 35.0% |
| GTTAATGCATCATGAGACTA+AGG | - | chr5_1:4954200-4954219 | Msa0713070:intron | 35.0% | |
| GTATAAACCCTCCATATCTT+TGG | + | chr5_1:4954228-4954247 | None:intergenic | 35.0% | |
| AAGGGATTTACAGAGGAAAA+TGG | + | chr5_1:4954459-4954478 | None:intergenic | 35.0% | |
| GGAAAATAAGGGATTTACAG+AGG | + | chr5_1:4954466-4954485 | None:intergenic | 35.0% | |
| CGAAGCTTCAGTATTATTGA+TGG | + | chr5_1:4954487-4954506 | None:intergenic | 35.0% | |
| TTCCTAACAGCTCAATCTTT+CGG | - | chr5_1:4954554-4954573 | Msa0713070:intron | 35.0% | |
| TGTTTCAACATTCACATCGA+TGG | - | chr5_1:4954960-4954979 | Msa0713070:intron | 35.0% | |
| !!! | CATCGATGGTTTTTTGTTGA+TGG | - | chr5_1:4954974-4954993 | Msa0713070:intron | 35.0% |
| TTGGTCATCATGATTGATTG+AGG | + | chr5_1:4955085-4955104 | None:intergenic | 35.0% | |
| ATCATGATGACCAAGTTAAC+AGG | - | chr5_1:4955091-4955110 | Msa0713070:CDS | 35.0% | |
| ACTATGCATTCTTAAAGCCT+TGG | + | chr5_1:4955312-4955331 | None:intergenic | 35.0% | |
| ACAAGATGACTTTATTGGGT+TGG | + | chr5_1:4955366-4955385 | None:intergenic | 35.0% | |
| ACTTCATGGAGAAATGAGAA+TGG | + | chr5_1:4955467-4955486 | None:intergenic | 35.0% | |
| ACAACCTCTTGTGTAAAAAC+AGG | - | chr5_1:4955606-4955625 | Msa0713070:intron | 35.0% | |
| CAACCTCTTGTGTAAAAACA+GGG | - | chr5_1:4955607-4955626 | Msa0713070:intron | 35.0% | |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | chr5_1:4955613-4955632 | None:intergenic | 35.0% |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr5_1:4955612-4955631 | Msa0713070:intron | 35.0% | |
| ! | GTTGCCCTTTTATTATTGCT+GGG | - | chr5_1:4955705-4955724 | Msa0713070:intron | 35.0% |
| CATGCCCAGCAATAATAAAA+GGG | + | chr5_1:4955712-4955731 | None:intergenic | 35.0% | |
| ATGTTTCTCCCTTACTTTCA+CGG | - | chr5_1:4955775-4955794 | Msa0713070:intron | 35.0% | |
| ! | GTTGCCCTTTTATTATTGCT+GGG | - | chr5_1:4955705-4955724 | Msa0713070:intron | 35.0% |
| CATGCCCAGCAATAATAAAA+GGG | + | chr5_1:4955712-4955731 | None:intergenic | 35.0% | |
| GGCATGGTCATTATGTTAAT+CGG | - | chr5_1:4955726-4955745 | Msa0713070:intron | 35.0% | |
| ! | TGAGAGATTGGTTGAAGAAA+AGG | - | chr5_1:4955968-4955987 | Msa0713070:intron | 35.0% |
| ! | GAGAGATTGGTTGAAGAAAA+GGG | - | chr5_1:4955969-4955988 | Msa0713070:intron | 35.0% |
| AGACACCTTTCATTCTGTAT+AGG | + | chr5_1:4956001-4956020 | None:intergenic | 35.0% | |
| !! | ATACAGAATGAAAGGTGTCT+TGG | - | chr5_1:4956001-4956020 | Msa0713070:intron | 35.0% |
| CTGAAACACATATCGTTGTT+CGG | + | chr5_1:4956039-4956058 | None:intergenic | 35.0% | |
| TGTGTTCATTGGAAGGAATT+TGG | - | chr5_1:4956239-4956258 | Msa0713070:CDS | 35.0% | |
| GGGATGATGATTGAACAGTT+TGG | + | chr5_1:4949710-4949729 | None:intergenic | 40.0% | |
| GAAATTGGAACGGAGTTGAA+GGG | + | chr5_1:4949730-4949749 | None:intergenic | 40.0% | |
| GTTCCAGCTACAATCATTAC+CGG | - | chr5_1:4949837-4949856 | Msa0713070:intron | 40.0% | |
| AAACCGGTAATGATTGTAGC+TGG | + | chr5_1:4949843-4949862 | None:intergenic | 40.0% | |
| ! | CATGCAACAAGTTCTAATGG+AGG | - | chr5_1:4950164-4950183 | Msa0713070:intron | 40.0% |
| ! | AGTTCTAATGGAGGGAAGTT+TGG | - | chr5_1:4950173-4950192 | Msa0713070:intron | 40.0% |
| GTTCTAATGGAGGGAAGTTT+GGG | - | chr5_1:4950174-4950193 | Msa0713070:intron | 40.0% | |
| !! | TATTAGAGTACTGCTTAGCG+AGG | - | chr5_1:4950366-4950385 | Msa0713070:intron | 40.0% |
| CATATTCTCACATCCCAACA+TGG | - | chr5_1:4950443-4950462 | Msa0713070:intron | 40.0% | |
| ACACTCAATAACTGTGGGTT+AGG | - | chr5_1:4950510-4950529 | Msa0713070:intron | 40.0% | |
| TCACAGGAAAAAGATACCGA+TGG | + | chr5_1:4950665-4950684 | None:intergenic | 40.0% | |
| CTTAGTCGAGTCAATATCAC+AGG | + | chr5_1:4950681-4950700 | None:intergenic | 40.0% | |
| AAGGGAATGATTTGAGTGTG+TGG | - | chr5_1:4950758-4950777 | Msa0713070:intron | 40.0% | |
| TCTGGCTGTTGTATGTAGTT+TGG | - | chr5_1:4950837-4950856 | Msa0713070:intron | 40.0% | |
| ! | CTGTTGTATGTAGTTTGGTG+AGG | - | chr5_1:4950842-4950861 | Msa0713070:intron | 40.0% |
| ! | GGTTGATATTGATGGATCAC+TGG | - | chr5_1:4950863-4950882 | Msa0713070:intron | 40.0% |
| GCTAGTCATTCTTCTGTGAA+TGG | - | chr5_1:4950888-4950907 | Msa0713070:intron | 40.0% | |
| ! | AAATGCTGTTGGAGTTGGTT+AGG | - | chr5_1:4950973-4950992 | Msa0713070:intron | 40.0% |
| ! | TTTTGTGCTTTGTGTACTGG+GGG | - | chr5_1:4951068-4951087 | Msa0713070:intron | 40.0% |
| ! | TTGTTTGGGACTTCGATCAT+AGG | - | chr5_1:4951179-4951198 | Msa0713070:CDS | 40.0% |
| AAAGTTTCAATAACAGGGGC+TGG | + | chr5_1:4951524-4951543 | None:intergenic | 40.0% | |
| TGCCATGCAACATTTGAATG+AGG | - | chr5_1:4951613-4951632 | Msa0713070:intron | 40.0% | |
| CACCTCATTCAAATGTTGCA+TGG | + | chr5_1:4951618-4951637 | None:intergenic | 40.0% | |
| TGAGGTGAAACCAAGATTTG+TGG | - | chr5_1:4951631-4951650 | Msa0713070:intron | 40.0% | |
| ACCAAGATTTGTGGTCAATG+AGG | - | chr5_1:4951640-4951659 | Msa0713070:intron | 40.0% | |
| ! | TTTTGAACAAGGCAAGCTTC+TGG | - | chr5_1:4951696-4951715 | Msa0713070:intron | 40.0% |
| AGGTGTGTTTCAGTTACTTG+TGG | - | chr5_1:4951876-4951895 | Msa0713070:intron | 40.0% | |
| ! | GTTTAAATGGTGGAATGGCA+TGG | - | chr5_1:4952227-4952246 | Msa0713070:intron | 40.0% |
| GATGTGGGGGTTGTAAAAAT+CGG | + | chr5_1:4952253-4952272 | None:intergenic | 40.0% | |
| AACTTGAAAAAGGGATGTGG+GGG | + | chr5_1:4952266-4952285 | None:intergenic | 40.0% | |
| CAACTTGAAAAAGGGATGTG+GGG | + | chr5_1:4952267-4952286 | None:intergenic | 40.0% | |
| GCAACTTGAAAAAGGGATGT+GGG | + | chr5_1:4952268-4952287 | None:intergenic | 40.0% | |
| GCGATTGGCAACTTGAAAAA+GGG | + | chr5_1:4952275-4952294 | None:intergenic | 40.0% | |
| TGCGATTGGCAACTTGAAAA+AGG | + | chr5_1:4952276-4952295 | None:intergenic | 40.0% | |
| ACATGTGTATATTGGGGAGA+TGG | - | chr5_1:4952624-4952643 | Msa0713070:intron | 40.0% | |
| CATAGACTTTGTTCTTGGTG+TGG | - | chr5_1:4952847-4952866 | Msa0713070:intron | 40.0% | |
| TGGGAGGATATGATATTCAG+AGG | - | chr5_1:4952867-4952886 | Msa0713070:intron | 40.0% | |
| ATATTGCAGAATCGAAGCTG+AGG | - | chr5_1:4953014-4953033 | Msa0713070:intron | 40.0% | |
| AAGCATCTGGCATAATGCAA+TGG | + | chr5_1:4953255-4953274 | None:intergenic | 40.0% | |
| CATGATTTGAATCCTGGCAA+GGG | - | chr5_1:4953593-4953612 | Msa0713070:intron | 40.0% | |
| ! | TTTGTATTTTCTCCCTTGCC+AGG | + | chr5_1:4953608-4953627 | None:intergenic | 40.0% |
| TTAGTAAGCTTCAGCTTGAG+GGG | + | chr5_1:4953759-4953778 | None:intergenic | 40.0% | |
| CTTTAGTAAGCTTCAGCTTG+AGG | + | chr5_1:4953761-4953780 | None:intergenic | 40.0% | |
| GCATTCGTTTGTTCCCAAAT+TGG | + | chr5_1:4953913-4953932 | None:intergenic | 40.0% | |
| GAGTAGTTGCTTCTACTAGA+TGG | + | chr5_1:4953948-4953967 | None:intergenic | 40.0% | |
| GGCCTAATATCATTGCAGTT+TGG | + | chr5_1:4954019-4954038 | None:intergenic | 40.0% | |
| TGTGGTGCACCTTTCAATTA+AGG | + | chr5_1:4954065-4954084 | None:intergenic | 40.0% | |
| ! | CTTCGGACCCAATATCATTT+TGG | + | chr5_1:4954100-4954119 | None:intergenic | 40.0% |
| ACACCATCAAGTATGTGCTT+CGG | + | chr5_1:4954117-4954136 | None:intergenic | 40.0% | |
| ! | AGGACTGGTACACAAGTTAT+TGG | - | chr5_1:4954175-4954194 | Msa0713070:intron | 40.0% |
| GATAGTGAGTCCAGTAATCT+GGG | - | chr5_1:4954351-4954370 | Msa0713070:CDS | 40.0% | |
| TCATGATTGATTGAGGACCA+AGG | + | chr5_1:4955078-4955097 | None:intergenic | 40.0% | |
| GTGTGGAATTCCTGTTAACT+TGG | + | chr5_1:4955104-4955123 | None:intergenic | 40.0% | |
| CAGGAATTCCACACTCTTAT+TGG | - | chr5_1:4955110-4955129 | Msa0713070:CDS | 40.0% | |
| TGCATTTGCTTGTGGAATAC+AGG | - | chr5_1:4955187-4955206 | Msa0713070:intron | 40.0% | |
| !! | TTCTGGTGTCATAGAAACCA+AGG | - | chr5_1:4955292-4955311 | Msa0713070:intron | 40.0% |
| !!! | TGACTGTGCATTGACTTTTC+AGG | - | chr5_1:4955425-4955444 | Msa0713070:intron | 40.0% |
| ATTGTTGTCATGTGACCGTA+AGG | - | chr5_1:4955562-4955581 | Msa0713070:CDS | 40.0% | |
| ! | TTACACAAGAGGTTGTTTCC+AGG | + | chr5_1:4955602-4955621 | None:intergenic | 40.0% |
| CGTACAATACACCAAATGGT+GGG | - | chr5_1:4955638-4955657 | Msa0713070:intron | 40.0% | |
| GCAATAATAAAAGGGCAACC+CGG | + | chr5_1:4955704-4955723 | None:intergenic | 40.0% | |
| ! | GGTTGCCCTTTTATTATTGC+TGG | - | chr5_1:4955704-4955723 | Msa0713070:intron | 40.0% |
| CCATGCCCAGCAATAATAAA+AGG | + | chr5_1:4955713-4955732 | None:intergenic | 40.0% | |
| ! | CCTTTTATTATTGCTGGGCA+TGG | - | chr5_1:4955710-4955729 | Msa0713070:intron | 40.0% |
| ! | GGTTGCCCTTTTATTATTGC+TGG | - | chr5_1:4955704-4955723 | Msa0713070:intron | 40.0% |
| CCATGCCCAGCAATAATAAA+AGG | + | chr5_1:4955713-4955732 | None:intergenic | 40.0% | |
| ! | CCTTTTATTATTGCTGGGCA+TGG | - | chr5_1:4955710-4955729 | Msa0713070:intron | 40.0% |
| TGGTGGTTAAGGTTGAAGAT+TGG | - | chr5_1:4955943-4955962 | Msa0713070:intron | 40.0% | |
| !! | TGAAGATTGGCTTGAGAGAT+TGG | - | chr5_1:4955956-4955975 | Msa0713070:intron | 40.0% |
| ATTGGTTGAAGAAAAGGGAG+AGG | - | chr5_1:4955974-4955993 | Msa0713070:intron | 40.0% | |
| GAGGACCTATACAGAATGAA+AGG | - | chr5_1:4955993-4956012 | Msa0713070:intron | 40.0% | |
| CGAACAACGATATGTGTTTC+AGG | - | chr5_1:4956037-4956056 | Msa0713070:intron | 40.0% | |
| GGAAATTGGAACGGAGTTGA+AGG | + | chr5_1:4949731-4949750 | None:intergenic | 45.0% | |
| AACAGAAGCTTCTTCGCCAT+GGG | + | chr5_1:4949808-4949827 | None:intergenic | 45.0% | |
| !! | GCTTAGCGAGGCTCTTATTT+TGG | - | chr5_1:4950378-4950397 | Msa0713070:intron | 45.0% |
| TGAACACAATACCTCGAGCA+GGG | + | chr5_1:4950730-4950749 | None:intergenic | 45.0% | |
| ATGAACACAATACCTCGAGC+AGG | + | chr5_1:4950731-4950750 | None:intergenic | 45.0% | |
| !! | GAGTGTGTGGAGTGTTTTTG+AGG | - | chr5_1:4950771-4950790 | Msa0713070:intron | 45.0% |
| GCCTCATTGACCACAAATCT+TGG | + | chr5_1:4951644-4951663 | None:intergenic | 45.0% | |
| ! | TTTTGCAATCTGCGCTTCTC+TGG | + | chr5_1:4952129-4952148 | None:intergenic | 45.0% |
| !! | ATCTATGACTTGCTCCATGG+AGG | + | chr5_1:4952157-4952176 | None:intergenic | 45.0% |
| !! | AGCATCTATGACTTGCTCCA+TGG | + | chr5_1:4952160-4952179 | None:intergenic | 45.0% |
| AACAATGCTGCATACTTGGG+AGG | + | chr5_1:4952210-4952229 | None:intergenic | 45.0% | |
| GGCAACTTGAAAAAGGGATG+TGG | + | chr5_1:4952269-4952288 | None:intergenic | 45.0% | |
| GGCAGTCTTAGAATACGGAA+GGG | + | chr5_1:4952354-4952373 | None:intergenic | 45.0% | |
| AGGCAGTCTTAGAATACGGA+AGG | + | chr5_1:4952355-4952374 | None:intergenic | 45.0% | |
| TGCAGCAAATACAGACGGAA+AGG | + | chr5_1:4952963-4952982 | None:intergenic | 45.0% | |
| AGAATCGAAGCTGAGGTAGA+AGG | - | chr5_1:4953021-4953040 | Msa0713070:intron | 45.0% | |
| TACCATGTCCACAGTCATCT+GGG | + | chr5_1:4953071-4953090 | None:intergenic | 45.0% | |
| AGGAGCAGTAGAGAATGAAC+TGG | - | chr5_1:4953296-4953315 | Msa0713070:intron | 45.0% | |
| ACGGTCCATGATTTGAATCC+TGG | - | chr5_1:4953587-4953606 | Msa0713070:intron | 45.0% | |
| CCTTGCCAGGATTCAAATCA+TGG | + | chr5_1:4953595-4953614 | None:intergenic | 45.0% | |
| CCATGATTTGAATCCTGGCA+AGG | - | chr5_1:4953592-4953611 | Msa0713070:intron | 45.0% | |
| TAGTAAGCTTCAGCTTGAGG+GGG | + | chr5_1:4953758-4953777 | None:intergenic | 45.0% | |
| ACAACTGTGACAATGGTCTG+AGG | - | chr5_1:4953817-4953836 | Msa0713070:intron | 45.0% | |
| !!! | TCATTTTCTGGAGTGAGCAC+AGG | + | chr5_1:4954040-4954059 | None:intergenic | 45.0% |
| TGTGCTCACTCCAGAAAATG+AGG | - | chr5_1:4954039-4954058 | Msa0713070:intron | 45.0% | |
| !! | CAGAGAAAAGGTGTTAGGAC+TGG | - | chr5_1:4954160-4954179 | Msa0713070:CDS | 45.0% |
| AGACTAAGGGCCCAAAGATA+TGG | - | chr5_1:4954214-4954233 | Msa0713070:intron | 45.0% | |
| TAAGGGCCCAAAGATATGGA+GGG | - | chr5_1:4954218-4954237 | Msa0713070:intron | 45.0% | |
| TATGGAGGGTTTATACTCGC+AGG | - | chr5_1:4954232-4954251 | Msa0713070:intron | 45.0% | |
| ATGGAGGGTTTATACTCGCA+GGG | - | chr5_1:4954233-4954252 | Msa0713070:intron | 45.0% | |
| GGATAGTGAGTCCAGTAATC+TGG | - | chr5_1:4954350-4954369 | Msa0713070:CDS | 45.0% | |
| TTCCATGAGACCCAGATTAC+TGG | + | chr5_1:4954364-4954383 | None:intergenic | 45.0% | |
| ! | ATAGAGAGCACACACTCTGT+AGG | - | chr5_1:4954403-4954422 | Msa0713070:CDS | 45.0% |
| ! | TAGAGAGCACACACTCTGTA+GGG | - | chr5_1:4954404-4954423 | Msa0713070:CDS | 45.0% |
| CTCCGAAAGATTGAGCTGTT+AGG | + | chr5_1:4954559-4954578 | None:intergenic | 45.0% | |
| CTAACAGCTCAATCTTTCGG+AGG | - | chr5_1:4954557-4954576 | Msa0713070:intron | 45.0% | |
| CTCTAGTGTCAGCATTGTTG+CGG | - | chr5_1:4954806-4954825 | Msa0713070:intron | 45.0% | |
| !! | TGGTGCTATGCATTTGCTTG+TGG | - | chr5_1:4955179-4955198 | Msa0713070:intron | 45.0% |
| ! | AATGCAAATGCGTGTCGTTC+TGG | - | chr5_1:4955275-4955294 | Msa0713070:intron | 45.0% |
| ATCATTAACCTTGGCGCAAC+TGG | - | chr5_1:4955535-4955554 | Msa0713070:CDS | 45.0% | |
| ! | CAATTTTACCAGTTGCGCCA+AGG | + | chr5_1:4955546-4955565 | None:intergenic | 45.0% |
| GCTGCGTACAATACACCAAA+TGG | - | chr5_1:4955634-4955653 | Msa0713070:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr5_1:4955637-4955656 | Msa0713070:intron | 45.0% | |
| TTTCTCCCTTACTTTCACGG+TGG | - | chr5_1:4955778-4955797 | Msa0713070:intron | 45.0% | |
| TTCTCCCTTACTTTCACGGT+GGG | - | chr5_1:4955779-4955798 | Msa0713070:intron | 45.0% | |
| !! | AATGAAAGGTGTCTTGGCAG+TGG | - | chr5_1:4956007-4956026 | Msa0713070:intron | 45.0% |
| ATGACAGCCCAGGAAAAACA+TGG | - | chr5_1:4956187-4956206 | Msa0713070:CDS | 45.0% | |
| ! | TGGGTTGCCATGTTTTTCCT+GGG | + | chr5_1:4956197-4956216 | None:intergenic | 45.0% |
| !! | TTGGGTTGCCATGTTTTTCC+TGG | + | chr5_1:4956198-4956217 | None:intergenic | 45.0% |
| GATGAAACTGCCCTCAGAAA+AGG | - | chr5_1:4956261-4956280 | Msa0713070:CDS | 45.0% | |
| !!! | GCCTTTGAAGCCTTTTCTGA+GGG | + | chr5_1:4956274-4956293 | None:intergenic | 45.0% |
| !!! | AGCCTTTGAAGCCTTTTCTG+AGG | + | chr5_1:4956275-4956294 | None:intergenic | 45.0% |
| CAACAGAAGCTTCTTCGCCA+TGG | + | chr5_1:4949809-4949828 | None:intergenic | 50.0% | |
| !!! | ATTACCGGTTTTCTCGGCTC+CGG | - | chr5_1:4949852-4949871 | Msa0713070:intron | 50.0% |
| TCACATCCCAACATGGCAAG+CGG | - | chr5_1:4950450-4950469 | Msa0713070:intron | 50.0% | |
| AGCTATCCGCTTGCCATGTT+GGG | + | chr5_1:4950459-4950478 | None:intergenic | 50.0% | |
| TGTGTATGATACCCTGCTCG+AGG | - | chr5_1:4950716-4950735 | Msa0713070:intron | 50.0% | |
| !! | CTTTAGGGAGTGTCCCTTCA+TGG | - | chr5_1:4951345-4951364 | Msa0713070:intron | 50.0% |
| ! | GACTTTGTTCTTGGTGTGGG+AGG | - | chr5_1:4952851-4952870 | Msa0713070:intron | 50.0% |
| GTACCATGTCCACAGTCATC+TGG | + | chr5_1:4953072-4953091 | None:intergenic | 50.0% | |
| ! | TAGCTCACTGGGTTGAGCTA+AGG | - | chr5_1:4953559-4953578 | Msa0713070:intron | 50.0% |
| ! | AGCTCACTGGGTTGAGCTAA+GGG | - | chr5_1:4953560-4953579 | Msa0713070:intron | 50.0% |
| GGGTTGAGCTAAGGGGTTAA+CGG | - | chr5_1:4953568-4953587 | Msa0713070:intron | 50.0% | |
| ! | CTTGATTCTTTGGGAGCGAG+TGG | + | chr5_1:4953886-4953905 | None:intergenic | 50.0% |
| GGTCCGAAGCACATACTTGA+TGG | - | chr5_1:4954111-4954130 | Msa0713070:intron | 50.0% | |
| CTAAGGGCCCAAAGATATGG+AGG | - | chr5_1:4954217-4954236 | Msa0713070:intron | 50.0% | |
| GCAGGGCAAAGTCAGCTAAA+GGG | - | chr5_1:4954250-4954269 | Msa0713070:intron | 50.0% | |
| CAGGGCAAAGTCAGCTAAAG+GGG | - | chr5_1:4954251-4954270 | Msa0713070:intron | 50.0% | |
| ! | AGTGATAGTGTCACCTGAGC+TGG | - | chr5_1:4954274-4954293 | Msa0713070:intron | 50.0% |
| GTCCAGTAATCTGGGTCTCA+TGG | - | chr5_1:4954359-4954378 | Msa0713070:CDS | 50.0% | |
| ! | AGAGAGCACACACTCTGTAG+GGG | - | chr5_1:4954405-4954424 | Msa0713070:CDS | 50.0% |
| ! | GTATTGCTACTGACTGCCAC+AGG | + | chr5_1:4954437-4954456 | None:intergenic | 50.0% |
| TAGTGTCAGCATTGTTGCGG+AGG | - | chr5_1:4954809-4954828 | Msa0713070:intron | 50.0% | |
| AGTGTCAGCATTGTTGCGGA+GGG | - | chr5_1:4954810-4954829 | Msa0713070:intron | 50.0% | |
| GGGAACTCTTGATCGTGATG+AGG | - | chr5_1:4954830-4954849 | Msa0713070:intron | 50.0% | |
| GTCATGTGACCGTAAGGTCA+CGG | - | chr5_1:4955568-4955587 | Msa0713070:CDS | 50.0% | |
| TCATGTGACCGTAAGGTCAC+GGG | - | chr5_1:4955569-4955588 | Msa0713070:CDS | 50.0% | |
| GACTTGAACCCGTGACCTTA+CGG | + | chr5_1:4955580-4955599 | None:intergenic | 50.0% | |
| !! | AAAGGTGTCTTGGCAGTGGA+TGG | - | chr5_1:4956011-4956030 | Msa0713070:intron | 50.0% |
| GCCCTCAGAAAAGGCTTCAA+AGG | - | chr5_1:4956270-4956289 | Msa0713070:CDS | 50.0% | |
| AGAAGCTTCTTCGCCATGGG+TGG | + | chr5_1:4949805-4949824 | None:intergenic | 55.0% | |
| CTTTCCGGAGCCGAGAAAAC+CGG | + | chr5_1:4949859-4949878 | None:intergenic | 55.0% | |
| CAGCTATCCGCTTGCCATGT+TGG | + | chr5_1:4950460-4950479 | None:intergenic | 55.0% | |
| !! | TCTGGGTGGCTTGCTGTAGA+GGG | + | chr5_1:4953054-4953073 | None:intergenic | 55.0% |
| !! | ATCTGGGTGGCTTGCTGTAG+AGG | + | chr5_1:4953055-4953074 | None:intergenic | 55.0% |
| CATGTCCACAGTCATCTGGG+TGG | + | chr5_1:4953068-4953087 | None:intergenic | 55.0% | |
| CACCCAGATGACTGTGGACA+TGG | - | chr5_1:4953066-4953085 | Msa0713070:intron | 55.0% | |
| ! | GCTCACTGGGTTGAGCTAAG+GGG | - | chr5_1:4953561-4953580 | Msa0713070:intron | 55.0% |
| TCAGCTTGAGGGGGAGTCTT+AGG | + | chr5_1:4953749-4953768 | None:intergenic | 55.0% | |
| ! | GATTCTTTGGGAGCGAGTGG+TGG | + | chr5_1:4953883-4953902 | None:intergenic | 55.0% |
| CGCAGGGCAAAGTCAGCTAA+AGG | - | chr5_1:4954249-4954268 | Msa0713070:intron | 55.0% | |
| TCTGTAGGGGCTGAATCCTG+TGG | - | chr5_1:4954418-4954437 | Msa0713070:CDS | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr5_1:4955581-4955600 | Msa0713070:intron | 55.0% | |
| CTGAAGCTCCCGCATATGCA+GGG | + | chr5_1:4955677-4955696 | None:intergenic | 55.0% | |
| ACTGAAGCTCCCGCATATGC+AGG | + | chr5_1:4955678-4955697 | None:intergenic | 55.0% | |
| GGGTCCCACCGTGAAAGTAA+GGG | + | chr5_1:4955786-4955805 | None:intergenic | 55.0% | |
| CTGAAGCTCCCGCATATGCA+GGG | + | chr5_1:4955677-4955696 | None:intergenic | 55.0% | |
| ACTGAAGCTCCCGCATATGC+AGG | + | chr5_1:4955678-4955697 | None:intergenic | 55.0% | |
| ! | TCAGGGGGTGCATTCCATGT+TGG | - | chr5_1:4956164-4956183 | Msa0713070:CDS | 55.0% |
| TCCATGTTGGATGACAGCCC+AGG | - | chr5_1:4956177-4956196 | Msa0713070:CDS | 55.0% | |
| TCCTGGGCTGTCATCCAACA+TGG | + | chr5_1:4956181-4956200 | None:intergenic | 55.0% | |
| TCCTCTGCTCCAACCACCCA+TGG | - | chr5_1:4949789-4949808 | Msa0713070:CDS | 60.0% | |
| GCTTCTTCGCCATGGGTGGT+TGG | + | chr5_1:4949801-4949820 | None:intergenic | 60.0% | |
| ! | CGGTTTTCTCGGCTCCGGAA+AGG | - | chr5_1:4949857-4949876 | Msa0713070:intron | 60.0% |
| TGCCTATGCTGCACTGTGCG+AGG | - | chr5_1:4950939-4950958 | Msa0713070:intron | 60.0% | |
| CTCCTCGCACAGTGCAGCAT+AGG | + | chr5_1:4950944-4950963 | None:intergenic | 60.0% | |
| GCAAGCCACCCAGATGACTG+TGG | - | chr5_1:4953060-4953079 | Msa0713070:intron | 60.0% | |
| AAGGGAGGACGGTAGCTCAC+TGG | - | chr5_1:4953547-4953566 | Msa0713070:intron | 60.0% | |
| AGGGAGGACGGTAGCTCACT+GGG | - | chr5_1:4953548-4953567 | Msa0713070:intron | 60.0% | |
| TCACCTGAGCTGGCTGCTTC+TGG | - | chr5_1:4954284-4954303 | Msa0713070:intron | 60.0% | |
| CTTCCAGAAGCAGCCAGCTC+AGG | + | chr5_1:4954290-4954309 | None:intergenic | 60.0% | |
| CTGAGCTGGCTGCTTCTGGA+AGG | - | chr5_1:4954288-4954307 | Msa0713070:intron | 60.0% | |
| ! | AGCTGGCTGCTTCTGGAAGG+AGG | - | chr5_1:4954291-4954310 | Msa0713070:intron | 60.0% |
| ! | GCTGGCTGCTTCTGGAAGGA+GGG | - | chr5_1:4954292-4954311 | Msa0713070:intron | 60.0% |
| ! | CTGGCTGCTTCTGGAAGGAG+GGG | - | chr5_1:4954293-4954312 | Msa0713070:intron | 60.0% |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr5_1:4955650-4955669 | Msa0713070:intron | 60.0% |
| CATATGCAGGGTCCGGGAAG+GGG | + | chr5_1:4955665-4955684 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | + | chr5_1:4955666-4955685 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | - | chr5_1:4955665-4955684 | Msa0713070:intron | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | - | chr5_1:4955666-4955685 | Msa0713070:intron | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | - | chr5_1:4955682-4955701 | Msa0713070:intron | 60.0% | |
| GGGGTCCCACCGTGAAAGTA+AGG | + | chr5_1:4955787-4955806 | None:intergenic | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | + | chr5_1:4955665-4955684 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | + | chr5_1:4955666-4955685 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | - | chr5_1:4955665-4955684 | Msa0713070:intron | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | - | chr5_1:4955666-4955685 | Msa0713070:intron | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+TGG | - | chr5_1:4955682-4955701 | Msa0713070:intron | 60.0% | |
| TGCGGGAGCTTCAGTGCACT+GGG | - | chr5_1:4955824-4955843 | Msa0713070:intron | 60.0% | |
| GCCATGGGTGGTTGGAGCAG+AGG | + | chr5_1:4949793-4949812 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr5_1:4955652-4955671 | None:intergenic | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | + | chr5_1:4955667-4955686 | None:intergenic | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | + | chr5_1:4955671-4955690 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | + | chr5_1:4955672-4955691 | None:intergenic | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | - | chr5_1:4955683-4955702 | Msa0713070:intron | 65.0% | |
| TTCACGGTGGGACCCCTTCC+CGG | - | chr5_1:4955791-4955810 | Msa0713070:intron | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | + | chr5_1:4955667-4955686 | None:intergenic | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | + | chr5_1:4955671-4955690 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | + | chr5_1:4955672-4955691 | None:intergenic | 65.0% | |
| CGGGCGGTGACTGTGGGTGT+GGG | + | chr5_1:4956335-4956354 | None:intergenic | 70.0% | |
| TCGGGCGGTGACTGTGGGTG+TGG | + | chr5_1:4956336-4956355 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 4949663 | 4956357 | 4949663 | ID=Msa0713070;Name=Msa0713070 |
| chr5_1 | mRNA | 4949663 | 4956357 | 4949663 | ID=Msa0713070-mRNA-1;Parent=Msa0713070;Name=Msa0713070-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0|0.3|0.18|0.90|1|1|11|52|423 |
| chr5_1 | exon | 4949663 | 4949852 | 4949663 | ID=Msa0713070-mRNA-1:exon:2081;Parent=Msa0713070-mRNA-1 |
| chr5_1 | exon | 4949962 | 4950066 | 4949962 | ID=Msa0713070-mRNA-1:exon:2080;Parent=Msa0713070-mRNA-1 |
| chr5_1 | exon | 4951169 | 4951257 | 4951169 | ID=Msa0713070-mRNA-1:exon:2079;Parent=Msa0713070-mRNA-1 |
| chr5_1 | exon | 4952933 | 4952997 | 4952933 | ID=Msa0713070-mRNA-1:exon:2078;Parent=Msa0713070-mRNA-1 |
| chr5_1 | exon | 4953132 | 4953223 | 4953132 | ID=Msa0713070-mRNA-1:exon:2077;Parent=Msa0713070-mRNA-1 |
| chr5_1 | exon | 4953478 | 4953546 | 4953478 | ID=Msa0713070-mRNA-1:exon:2076;Parent=Msa0713070-mRNA-1 |
| chr5_1 | exon | 4954143 | 4954193 | 4954143 | ID=Msa0713070-mRNA-1:exon:2075;Parent=Msa0713070-mRNA-1 |
| chr5_1 | exon | 4954314 | 4954510 | 4954314 | ID=Msa0713070-mRNA-1:exon:2074;Parent=Msa0713070-mRNA-1 |
| chr5_1 | exon | 4954982 | 4955165 | 4954982 | ID=Msa0713070-mRNA-1:exon:2073;Parent=Msa0713070-mRNA-1 |
| chr5_1 | exon | 4955527 | 4955592 | 4955527 | ID=Msa0713070-mRNA-1:exon:2072;Parent=Msa0713070-mRNA-1 |
| chr5_1 | exon | 4956142 | 4956357 | 4956142 | ID=Msa0713070-mRNA-1:exon:2071;Parent=Msa0713070-mRNA-1 |
| chr5_1 | CDS | 4956142 | 4956357 | 4956142 | ID=Msa0713070-mRNA-1:cds;Parent=Msa0713070-mRNA-1 |
| chr5_1 | CDS | 4955527 | 4955592 | 4955527 | ID=Msa0713070-mRNA-1:cds;Parent=Msa0713070-mRNA-1 |
| chr5_1 | CDS | 4954982 | 4955165 | 4954982 | ID=Msa0713070-mRNA-1:cds;Parent=Msa0713070-mRNA-1 |
| chr5_1 | CDS | 4954314 | 4954510 | 4954314 | ID=Msa0713070-mRNA-1:cds;Parent=Msa0713070-mRNA-1 |
| chr5_1 | CDS | 4954143 | 4954193 | 4954143 | ID=Msa0713070-mRNA-1:cds;Parent=Msa0713070-mRNA-1 |
| chr5_1 | CDS | 4953478 | 4953546 | 4953478 | ID=Msa0713070-mRNA-1:cds;Parent=Msa0713070-mRNA-1 |
| chr5_1 | CDS | 4953132 | 4953223 | 4953132 | ID=Msa0713070-mRNA-1:cds;Parent=Msa0713070-mRNA-1 |
| chr5_1 | CDS | 4952933 | 4952997 | 4952933 | ID=Msa0713070-mRNA-1:cds;Parent=Msa0713070-mRNA-1 |
| chr5_1 | CDS | 4951169 | 4951257 | 4951169 | ID=Msa0713070-mRNA-1:cds;Parent=Msa0713070-mRNA-1 |
| chr5_1 | CDS | 4949962 | 4950066 | 4949962 | ID=Msa0713070-mRNA-1:cds;Parent=Msa0713070-mRNA-1 |
| chr5_1 | CDS | 4949715 | 4949852 | 4949715 | ID=Msa0713070-mRNA-1:cds;Parent=Msa0713070-mRNA-1 |
| chr5_1 | three_prime_UTR | 4949663 | 4949714 | 4949663 | ID=Msa0713070-mRNA-1:three_prime_utr;Parent=Msa0713070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
