Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279410 | A0A072U3C7 | 93.042 | 503 | 35 | 0 | 1 | 503 | 1 | 503 | 0.0 | 935 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1253030 | Msa1279410 | 0.995029 | 2.331880e-212 | -8.615850e-47 |
| Msa1036610 | Msa1279410 | 0.814070 | 1.857618e-51 | -8.615850e-47 |
| Msa1070010 | Msa1279410 | 0.800303 | 1.535719e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279410 | MtrunA17_Chr8g0369471 | 93.089 | 492 | 34 | 0 | 1 | 492 | 1 | 492 | 0.0 | 915 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279410 | AT5G48340.1 | 46.185 | 498 | 251 | 5 | 1 | 492 | 1 | 487 | 4.70e-132 | 393 |
| Msa1279410 | AT5G48340.4 | 46.185 | 498 | 251 | 5 | 1 | 492 | 1 | 487 | 4.70e-132 | 393 |
| Msa1279410 | AT5G48340.2 | 46.076 | 497 | 251 | 5 | 1 | 491 | 1 | 486 | 1.91e-131 | 391 |
| Msa1279410 | AT5G48340.3 | 42.331 | 163 | 88 | 3 | 1 | 159 | 1 | 161 | 3.98e-35 | 135 |
| Msa1279410 | AT5G48340.3 | 37.295 | 244 | 127 | 4 | 256 | 492 | 146 | 370 | 5.43e-25 | 107 |
Find 100 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCTTGGGTTCTGTATTAT+AGG | 0.193546 | 8_3:+16349432 | Msa1279410:CDS |
| TAGACAATGTGCCTGAATTT+TGG | 0.227769 | 8_3:+16348877 | Msa1279410:CDS |
| GCCTCATTACTTTCTCGATT+TGG | 0.243369 | 8_3:+16348827 | Msa1279410:CDS |
| GCGAGATCGTGCTTCTTCTT+TGG | 0.251308 | 8_3:-16347898 | None:intergenic |
| TCTTCTTCCTCCACCGCATT+AGG | 0.262634 | 8_3:+16347552 | Msa1279410:five_prime_UTR |
| GTCAAGCTATTACCATCATT+TGG | 0.281391 | 8_3:-16349347 | None:intergenic |
| CTCAGGGGCGGCAGCTTCTA+AGG | 0.291608 | 8_3:+16349252 | Msa1279410:CDS |
| CTTCTTCCTCCACCGCATTA+GGG | 0.337667 | 8_3:+16347553 | Msa1279410:five_prime_UTR |
| GGCTTTGTAGCAACCATTGC+AGG | 0.339622 | 8_3:-16348807 | None:intergenic |
| TGATAGGCACGGCGTCGTTT+TGG | 0.339810 | 8_3:-16347529 | None:intergenic |
| TTCATTTCATGGATTGGAAC+AGG | 0.342073 | 8_3:+16348692 | Msa1279410:CDS |
| CGGTTTCCAGTTCCTTCAAT+AGG | 0.353102 | 8_3:-16347747 | None:intergenic |
| TGCTCACACATAGAAGAAAA+AGG | 0.358266 | 8_3:-16349047 | None:intergenic |
| ATAGTGTAAGTTCTTTATCT+TGG | 0.363896 | 8_3:+16349783 | Msa1279410:CDS |
| ATTGTCTAGAAAATTCTTGA+TGG | 0.371708 | 8_3:-16348862 | None:intergenic |
| TTGGCAGATAATCCAACTTC+TGG | 0.379076 | 8_3:-16349712 | None:intergenic |
| TCAATAGATGACCAAAATTC+AGG | 0.380403 | 8_3:-16348888 | None:intergenic |
| TCAAGCTATTACCATCATTT+GGG | 0.387259 | 8_3:-16349346 | None:intergenic |
| GAGTGGGTTCTGATATGAAT+AGG | 0.388282 | 8_3:-16347675 | None:intergenic |
| GAGAATTGAATTGCGAGGTT+TGG | 0.389494 | 8_3:+16349139 | Msa1279410:CDS |
| TTGTCAGACGAAGATTGTTC+TGG | 0.389788 | 8_3:+16349563 | Msa1279410:CDS |
| GTGTCTTGGACTTCAGTCTT+GGG | 0.391880 | 8_3:+16349418 | Msa1279410:CDS |
| GCAGGATTTGTGTTACTTTG+TGG | 0.396647 | 8_3:+16349091 | Msa1279410:CDS |
| AGTGTCTTGGACTTCAGTCT+TGG | 0.399267 | 8_3:+16349417 | Msa1279410:CDS |
| AATCCACCTATTGAAGGAAC+TGG | 0.410212 | 8_3:+16347741 | Msa1279410:CDS |
| AAACCTCGCAATTCAATTCT+CGG | 0.412769 | 8_3:-16349137 | None:intergenic |
| GAGAGGATTCGAATGATGTA+TGG | 0.417526 | 8_3:+16348994 | Msa1279410:CDS |
| GACTTTCGCCAGCGACTCCT+TGG | 0.418063 | 8_3:-16349294 | None:intergenic |
| CATTCGAGCTTCTGCGCGAC+CGG | 0.420677 | 8_3:-16347794 | None:intergenic |
| GGATATTTGTTGGGAAGAGT+TGG | 0.420677 | 8_3:+16348758 | Msa1279410:CDS |
| AACCACTGCAACACACGCTT+AGG | 0.427913 | 8_3:-16348669 | None:intergenic |
| GTTGGAGTTACAGTGAATAG+AGG | 0.439889 | 8_3:-16347630 | None:intergenic |
| GTTGAATGCCGTCATAGCTC+AGG | 0.447333 | 8_3:+16349235 | Msa1279410:CDS |
| TGGTCCGCGATAATCTCTTC+CGG | 0.454400 | 8_3:+16347775 | Msa1279410:CDS |
| CTGGAAGTGGTGAAGTGTCT+TGG | 0.456625 | 8_3:+16349404 | Msa1279410:CDS |
| GGGTTTCTGGATCTATTGAC+TGG | 0.457184 | 8_3:+16349204 | Msa1279410:CDS |
| ATCTGCCAAATGCTAAAAGT+TGG | 0.464189 | 8_3:+16349726 | Msa1279410:CDS |
| ATGGATTGGAACAGGGGAAA+GGG | 0.469863 | 8_3:+16348700 | Msa1279410:CDS |
| CATGGATTGGAACAGGGGAA+AGG | 0.470041 | 8_3:+16348699 | Msa1279410:CDS |
| AGTGCAAGACTCCTGAGTCC+TGG | 0.472435 | 8_3:+16349465 | Msa1279410:CDS |
| CAGATTGGTTTCCGCAACTC+TGG | 0.476001 | 8_3:+16349509 | Msa1279410:CDS |
| AGGAACTGGAAACCGTTCTC+TGG | 0.477123 | 8_3:+16347755 | Msa1279410:CDS |
| CGGTGGAGGAAGAAGATGAT+AGG | 0.477766 | 8_3:-16347545 | None:intergenic |
| TTGGAGTTACAGTGAATAGA+GGG | 0.486350 | 8_3:-16347629 | None:intergenic |
| CGAAGAGGCCAAGGAGTCGC+TGG | 0.491398 | 8_3:+16349286 | Msa1279410:CDS |
| TAGGTTTAAGATGGAAACTC+TGG | 0.494699 | 8_3:+16349385 | Msa1279410:CDS |
| ACTTCGAATCCACCTATTGA+AGG | 0.495841 | 8_3:+16347735 | Msa1279410:CDS |
| GATAACTCACCGCAAAAGCT+TGG | 0.497614 | 8_3:+16347946 | Msa1279410:CDS |
| AACCTCGCAATTCAATTCTC+GGG | 0.500216 | 8_3:-16349136 | None:intergenic |
| GTGCAAGACTCCTGAGTCCT+GGG | 0.505880 | 8_3:+16349466 | Msa1279410:CDS |
| TTTGTTGGGAAGAGTTGGAG+TGG | 0.510782 | 8_3:+16348763 | Msa1279410:CDS |
| CATTTCATGGATTGGAACAG+GGG | 0.519467 | 8_3:+16348694 | Msa1279410:CDS |
| TAAGGATTTGATGTATAGAG+AGG | 0.525046 | 8_3:+16348977 | Msa1279410:CDS |
| AAGCTAGAAAGAAGAGGAGG+AGG | 0.528292 | 8_3:+16349633 | Msa1279410:CDS |
| GAAATGAAGGGAAGTTCGAT+GGG | 0.533912 | 8_3:-16347583 | None:intergenic |
| CTGCCGCCCCTGAGCTATGA+CGG | 0.534254 | 8_3:-16349243 | None:intergenic |
| TGGGAAGAGTTGGAGTGGAA+AGG | 0.539787 | 8_3:+16348768 | Msa1279410:CDS |
| TTTGCGTCGTTGTTTCGAGT+GGG | 0.543489 | 8_3:-16347691 | None:intergenic |
| TTTGCGTGACGAAGAGGCCA+AGG | 0.545883 | 8_3:+16349277 | Msa1279410:CDS |
| AGAAATGAAGGGAAGTTCGA+TGG | 0.547566 | 8_3:-16347584 | None:intergenic |
| CGAAACAACGACGCAAACGC+AGG | 0.547696 | 8_3:+16347697 | Msa1279410:CDS |
| TGATTTGTCTCGGTTGTTTG+TGG | 0.547770 | 8_3:+16349163 | Msa1279410:CDS |
| ATATCTGCAATCCCAAATGA+TGG | 0.547872 | 8_3:+16349335 | Msa1279410:CDS |
| TTTCCAGTTCCTTCAATAGG+TGG | 0.551534 | 8_3:-16347744 | None:intergenic |
| TGAAAACCCTAATGCGGTGG+AGG | 0.557770 | 8_3:-16347559 | None:intergenic |
| GATTATCGCGGACCAGAGAA+CGG | 0.558188 | 8_3:-16347767 | None:intergenic |
| TAAGATGGAAACTCTGGAAG+TGG | 0.559227 | 8_3:+16349391 | Msa1279410:CDS |
| AGAGGATTCGAATGATGTAT+GGG | 0.561752 | 8_3:+16348995 | Msa1279410:CDS |
| CATGCATTGTTAGATGAGGA+TGG | 0.563566 | 8_3:+16349536 | Msa1279410:CDS |
| ACCACTGCAACACACGCTTA+GGG | 0.565401 | 8_3:-16348668 | None:intergenic |
| GAGGTTTGGATGATTTGTCT+CGG | 0.567927 | 8_3:+16349153 | Msa1279410:CDS |
| GTTTGCGTCGTTGTTTCGAG+TGG | 0.569663 | 8_3:-16347692 | None:intergenic |
| TCATTTCATGGATTGGAACA+GGG | 0.571078 | 8_3:+16348693 | Msa1279410:CDS |
| ACATGGACAATCACCTGCAA+TGG | 0.571987 | 8_3:+16348794 | Msa1279410:CDS |
| TTGAATGCCGTCATAGCTCA+GGG | 0.576535 | 8_3:+16349236 | Msa1279410:CDS |
| AAGACGGACTCCCAGGACTC+AGG | 0.581627 | 8_3:-16349476 | None:intergenic |
| TGGCTCCGCAAAACCATCGC+GGG | 0.588456 | 8_3:+16347817 | Msa1279410:CDS |
| ACCCTAAGCGTGTGTTGCAG+TGG | 0.589208 | 8_3:+16348667 | Msa1279410:CDS |
| GTCGCGCAGAAGCTCGAATG+TGG | 0.594484 | 8_3:+16347797 | Msa1279410:CDS |
| ATGCATGTTTACCAGAGTTG+CGG | 0.599555 | 8_3:-16349520 | None:intergenic |
| AAAATTTCACGCTGGTCACG+AGG | 0.608242 | 8_3:-16347856 | None:intergenic |
| GGGTGAAAACCCTAATGCGG+TGG | 0.624070 | 8_3:-16347562 | None:intergenic |
| TCCAAATCGAGAAAGTAATG+AGG | 0.627045 | 8_3:-16348828 | None:intergenic |
| AATTGATGAAAATTTCACGC+TGG | 0.627657 | 8_3:-16347864 | None:intergenic |
| GATGCAGTTGAATCCCGCGA+TGG | 0.630007 | 8_3:-16347830 | None:intergenic |
| TTGGAGTGGAAAGGAAAACA+TGG | 0.632226 | 8_3:+16348777 | Msa1279410:CDS |
| AGCTAGAAAGAAGAGGAGGA+GGG | 0.640434 | 8_3:+16349634 | Msa1279410:CDS |
| CGTGTGATTTGAAGAAGCAG+CGG | 0.644875 | 8_3:-16347491 | None:intergenic |
| ATGCCGTCATAGCTCAGGGG+CGG | 0.646491 | 8_3:+16349240 | Msa1279410:CDS |
| CTGACGAGTACTCTTCTGCA+TGG | 0.658570 | 8_3:+16349759 | Msa1279410:CDS |
| GAGGAAGAAGATGATAGGCA+CGG | 0.663788 | 8_3:-16347540 | None:intergenic |
| GACCCGAGAATTGAATTGCG+AGG | 0.666025 | 8_3:+16349134 | Msa1279410:CDS |
| GTTTCTGAGTCTGTGAAAGA+CGG | 0.671580 | 8_3:+16348912 | Msa1279410:CDS |
| TAAACATGCATTGTTAGATG+AGG | 0.688381 | 8_3:+16349532 | Msa1279410:CDS |
| ATGGGGTGAAAACCCTAATG+CGG | 0.700737 | 8_3:-16347565 | None:intergenic |
| AGGAGGGCATATGATTACGA+TGG | 0.705287 | 8_3:+16349650 | Msa1279410:CDS |
| GTGGCTCCGCAAAACCATCG+CGG | 0.711146 | 8_3:+16347816 | Msa1279410:CDS |
| AAATGAAGGGAAGTTCGATG+GGG | 0.712842 | 8_3:-16347582 | None:intergenic |
| GCGACCGGAAGAGATTATCG+CGG | 0.750402 | 8_3:-16347779 | None:intergenic |
| TGAATGCCGTCATAGCTCAG+GGG | 0.777777 | 8_3:+16349237 | Msa1279410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACCTATTATTAAAAAAT+GGG | - | chr8_3:16349373-16349392 | None:intergenic | 10.0% |
| !! | TTAAACCTATTATTAAAAAA+TGG | - | chr8_3:16349374-16349393 | None:intergenic | 10.0% |
| !! | TAAACCTATTATTAAAAAAT+GGG | - | chr8_3:16349373-16349392 | None:intergenic | 10.0% |
| !! | TTAAACCTATTATTAAAAAA+TGG | - | chr8_3:16349374-16349393 | None:intergenic | 10.0% |
| !!! | AAACTGATTTTTAAGTTAAT+TGG | + | chr8_3:16348068-16348087 | Msa1279410:intron | 15.0% |
| !! | AAACCTATTATTAAAAAATG+GGG | - | chr8_3:16349372-16349391 | None:intergenic | 15.0% |
| !!! | TTTTAATAATAGGTTTAAGA+TGG | + | chr8_3:16349376-16349395 | Msa1279410:CDS | 15.0% |
| !!! | AAACTGATTTTTAAGTTAAT+TGG | + | chr8_3:16348068-16348087 | Msa1279410:intron | 15.0% |
| !! | AAACCTATTATTAAAAAATG+GGG | - | chr8_3:16349372-16349391 | None:intergenic | 15.0% |
| !!! | TTTTAATAATAGGTTTAAGA+TGG | + | chr8_3:16349376-16349395 | Msa1279410:CDS | 15.0% |
| !!! | GTTTTGATAAATTTGAATAG+CGG | - | chr8_3:16347472-16347491 | None:intergenic | 20.0% |
| !!! | ATTTTTAAGTTAATTGGTTC+CGG | + | chr8_3:16348074-16348093 | Msa1279410:intron | 20.0% |
| !!! | TAAAAAAAGTGATTTGTGTT+TGG | + | chr8_3:16348115-16348134 | Msa1279410:intron | 20.0% |
| !! | TCAAGTAAAATTAATTCTAG+AGG | + | chr8_3:16348170-16348189 | Msa1279410:intron | 20.0% |
| !! | TCAGTTTGCATTTAAAAATA+GGG | + | chr8_3:16348737-16348756 | Msa1279410:CDS | 20.0% |
| !! | TTAAAAATAGGGATATTTGT+TGG | + | chr8_3:16348748-16348767 | Msa1279410:CDS | 20.0% |
| !! | TAAAAATAGGGATATTTGTT+GGG | + | chr8_3:16348749-16348768 | Msa1279410:CDS | 20.0% |
| !!! | GTTTTGATAAATTTGAATAG+CGG | - | chr8_3:16347472-16347491 | None:intergenic | 20.0% |
| !!! | ATTTTTAAGTTAATTGGTTC+CGG | + | chr8_3:16348074-16348093 | Msa1279410:intron | 20.0% |
| !!! | TAAAAAAAGTGATTTGTGTT+TGG | + | chr8_3:16348115-16348134 | Msa1279410:intron | 20.0% |
| !! | TCAAGTAAAATTAATTCTAG+AGG | + | chr8_3:16348170-16348189 | Msa1279410:intron | 20.0% |
| !! | TCAGTTTGCATTTAAAAATA+GGG | + | chr8_3:16348737-16348756 | Msa1279410:CDS | 20.0% |
| !! | TTAAAAATAGGGATATTTGT+TGG | + | chr8_3:16348748-16348767 | Msa1279410:CDS | 20.0% |
| !! | TAAAAATAGGGATATTTGTT+GGG | + | chr8_3:16348749-16348768 | Msa1279410:CDS | 20.0% |
| !!! | GGAATTTTGAAAGAAATGAA+GGG | - | chr8_3:16347598-16347617 | None:intergenic | 25.0% |
| ! | GCAAATAAGTTATCAAAACA+GGG | - | chr8_3:16348297-16348316 | None:intergenic | 25.0% |
| ! | TGCAAATAAGTTATCAAAAC+AGG | - | chr8_3:16348298-16348317 | None:intergenic | 25.0% |
| ! | TTTCATCTTATTCTCATATG+TGG | - | chr8_3:16348483-16348502 | None:intergenic | 25.0% |
| ! | ATTCACAAACAAAACAATAC+GGG | - | chr8_3:16348608-16348627 | None:intergenic | 25.0% |
| ! | GATTCACAAACAAAACAATA+CGG | - | chr8_3:16348609-16348628 | None:intergenic | 25.0% |
| ! | TTGTGAATCTTGATTGTTTA+TGG | + | chr8_3:16348620-16348639 | Msa1279410:intron | 25.0% |
| ! | CTTGATTGTTTATGGTAAAT+TGG | + | chr8_3:16348628-16348647 | Msa1279410:intron | 25.0% |
| ! | CTCAGTTTGCATTTAAAAAT+AGG | + | chr8_3:16348736-16348755 | Msa1279410:CDS | 25.0% |
| ! | ATTGTCTAGAAAATTCTTGA+TGG | - | chr8_3:16348865-16348884 | None:intergenic | 25.0% |
| !!! | GTTTTTCGTTCGTTATTTTA+AGG | + | chr8_3:16348959-16348978 | Msa1279410:CDS | 25.0% |
| !!! | TGACCCCATTTTTTAATAAT+AGG | + | chr8_3:16349366-16349385 | Msa1279410:CDS | 25.0% |
| ! | AATCTGATTATGCAAAAAGA+CGG | - | chr8_3:16349495-16349514 | None:intergenic | 25.0% |
| !! | TTTTTCTTAACTCTAACAGA+AGG | - | chr8_3:16349602-16349621 | None:intergenic | 25.0% |
| ! | ATAGTGTAAGTTCTTTATCT+TGG | + | chr8_3:16349783-16349802 | Msa1279410:CDS | 25.0% |
| !!! | GGAATTTTGAAAGAAATGAA+GGG | - | chr8_3:16347598-16347617 | None:intergenic | 25.0% |
| ! | GCAAATAAGTTATCAAAACA+GGG | - | chr8_3:16348297-16348316 | None:intergenic | 25.0% |
| ! | TGCAAATAAGTTATCAAAAC+AGG | - | chr8_3:16348298-16348317 | None:intergenic | 25.0% |
| ! | TTTCATCTTATTCTCATATG+TGG | - | chr8_3:16348483-16348502 | None:intergenic | 25.0% |
| ! | ATTCACAAACAAAACAATAC+GGG | - | chr8_3:16348608-16348627 | None:intergenic | 25.0% |
| ! | GATTCACAAACAAAACAATA+CGG | - | chr8_3:16348609-16348628 | None:intergenic | 25.0% |
| ! | TTGTGAATCTTGATTGTTTA+TGG | + | chr8_3:16348620-16348639 | Msa1279410:intron | 25.0% |
| ! | CTTGATTGTTTATGGTAAAT+TGG | + | chr8_3:16348628-16348647 | Msa1279410:intron | 25.0% |
| ! | CTCAGTTTGCATTTAAAAAT+AGG | + | chr8_3:16348736-16348755 | Msa1279410:CDS | 25.0% |
| ! | ATTGTCTAGAAAATTCTTGA+TGG | - | chr8_3:16348865-16348884 | None:intergenic | 25.0% |
| !!! | GTTTTTCGTTCGTTATTTTA+AGG | + | chr8_3:16348959-16348978 | Msa1279410:CDS | 25.0% |
| !!! | TGACCCCATTTTTTAATAAT+AGG | + | chr8_3:16349366-16349385 | Msa1279410:CDS | 25.0% |
| ! | AATCTGATTATGCAAAAAGA+CGG | - | chr8_3:16349495-16349514 | None:intergenic | 25.0% |
| !! | TTTTTCTTAACTCTAACAGA+AGG | - | chr8_3:16349602-16349621 | None:intergenic | 25.0% |
| ! | ATAGTGTAAGTTCTTTATCT+TGG | + | chr8_3:16349783-16349802 | Msa1279410:CDS | 25.0% |
| !! | GGGAATTTTGAAAGAAATGA+AGG | - | chr8_3:16347599-16347618 | None:intergenic | 30.0% |
| !!! | ATAGGTTGATCATTTTTCGA+AGG | - | chr8_3:16347660-16347679 | None:intergenic | 30.0% |
| AATTGATGAAAATTTCACGC+TGG | - | chr8_3:16347867-16347886 | None:intergenic | 30.0% | |
| !! | ACCTTCAACTCAATTTTAAC+CGG | - | chr8_3:16348096-16348115 | None:intergenic | 30.0% |
| ATATGTTTGAATCCTAGAGT+AGG | - | chr8_3:16348206-16348225 | None:intergenic | 30.0% | |
| GAACTTATGAAAACAGCTTA+TGG | - | chr8_3:16348523-16348542 | None:intergenic | 30.0% | |
| TCAAATAAGCCAATTCAAAC+AGG | + | chr8_3:16348582-16348601 | Msa1279410:intron | 30.0% | |
| ! | GTAAATTGGTAATTATGTGC+AGG | + | chr8_3:16348642-16348661 | Msa1279410:intron | 30.0% |
| TCAATAGATGACCAAAATTC+AGG | - | chr8_3:16348891-16348910 | None:intergenic | 30.0% | |
| !! | TGAATTTTGGTCATCTATTG+AGG | + | chr8_3:16348890-16348909 | Msa1279410:CDS | 30.0% |
| TAAGGATTTGATGTATAGAG+AGG | + | chr8_3:16348977-16348996 | Msa1279410:CDS | 30.0% | |
| !!! | TCTTATTAGTTTTGAAGAGC+AGG | + | chr8_3:16349073-16349092 | Msa1279410:CDS | 30.0% |
| TCAAGCTATTACCATCATTT+GGG | - | chr8_3:16349349-16349368 | None:intergenic | 30.0% | |
| ! | GTCTTTTTGCATAATCAGAT+TGG | + | chr8_3:16349494-16349513 | Msa1279410:CDS | 30.0% |
| TAAACATGCATTGTTAGATG+AGG | + | chr8_3:16349532-16349551 | Msa1279410:CDS | 30.0% | |
| AACAAAAAGCTAGAAAGAAG+AGG | + | chr8_3:16349627-16349646 | Msa1279410:CDS | 30.0% | |
| !! | GGGAATTTTGAAAGAAATGA+AGG | - | chr8_3:16347599-16347618 | None:intergenic | 30.0% |
| !!! | ATAGGTTGATCATTTTTCGA+AGG | - | chr8_3:16347660-16347679 | None:intergenic | 30.0% |
| AATTGATGAAAATTTCACGC+TGG | - | chr8_3:16347867-16347886 | None:intergenic | 30.0% | |
| !! | ACCTTCAACTCAATTTTAAC+CGG | - | chr8_3:16348096-16348115 | None:intergenic | 30.0% |
| ATATGTTTGAATCCTAGAGT+AGG | - | chr8_3:16348206-16348225 | None:intergenic | 30.0% | |
| GAACTTATGAAAACAGCTTA+TGG | - | chr8_3:16348523-16348542 | None:intergenic | 30.0% | |
| TCAAATAAGCCAATTCAAAC+AGG | + | chr8_3:16348582-16348601 | Msa1279410:intron | 30.0% | |
| ! | GTAAATTGGTAATTATGTGC+AGG | + | chr8_3:16348642-16348661 | Msa1279410:intron | 30.0% |
| TCAATAGATGACCAAAATTC+AGG | - | chr8_3:16348891-16348910 | None:intergenic | 30.0% | |
| !! | TGAATTTTGGTCATCTATTG+AGG | + | chr8_3:16348890-16348909 | Msa1279410:CDS | 30.0% |
| TAAGGATTTGATGTATAGAG+AGG | + | chr8_3:16348977-16348996 | Msa1279410:CDS | 30.0% | |
| !!! | TCTTATTAGTTTTGAAGAGC+AGG | + | chr8_3:16349073-16349092 | Msa1279410:CDS | 30.0% |
| TCAAGCTATTACCATCATTT+GGG | - | chr8_3:16349349-16349368 | None:intergenic | 30.0% | |
| ! | GTCTTTTTGCATAATCAGAT+TGG | + | chr8_3:16349494-16349513 | Msa1279410:CDS | 30.0% |
| TAAACATGCATTGTTAGATG+AGG | + | chr8_3:16349532-16349551 | Msa1279410:CDS | 30.0% | |
| AACAAAAAGCTAGAAAGAAG+AGG | + | chr8_3:16349627-16349646 | Msa1279410:CDS | 30.0% | |
| !!! | GAATAGAGGGTTTTGAGTTT+GGG | - | chr8_3:16347619-16347638 | None:intergenic | 35.0% |
| !!! | TGAATAGAGGGTTTTGAGTT+TGG | - | chr8_3:16347620-16347639 | None:intergenic | 35.0% |
| TTGGAGTTACAGTGAATAGA+GGG | - | chr8_3:16347632-16347651 | None:intergenic | 35.0% | |
| ! | AAAACTGAACCAAGCTTTTG+CGG | - | chr8_3:16347958-16347977 | None:intergenic | 35.0% |
| !!! | GTGCTTGAGATTTTTTTTGC+AGG | + | chr8_3:16347994-16348013 | Msa1279410:CDS | 35.0% |
| !!! | GCGTTGTTTTAGTGTATGTT+TGG | + | chr8_3:16348032-16348051 | Msa1279410:intron | 35.0% |
| !! | TCCGGTTAAAATTGAGTTGA+AGG | + | chr8_3:16348092-16348111 | Msa1279410:intron | 35.0% |
| ! | AATTTTGTCTCCTCCAAATG+TGG | + | chr8_3:16348253-16348272 | Msa1279410:intron | 35.0% |
| GGCTTATTTGAACTCATCTA+CGG | - | chr8_3:16348573-16348592 | None:intergenic | 35.0% | |
| ! | TTGCAGTGGTTTTCATTTCA+TGG | + | chr8_3:16348681-16348700 | Msa1279410:CDS | 35.0% |
| ! | GTGGTTTTCATTTCATGGAT+TGG | + | chr8_3:16348686-16348705 | Msa1279410:CDS | 35.0% |
| !! | TTCATTTCATGGATTGGAAC+AGG | + | chr8_3:16348692-16348711 | Msa1279410:CDS | 35.0% |
| !! | TCATTTCATGGATTGGAACA+GGG | + | chr8_3:16348693-16348712 | Msa1279410:CDS | 35.0% |
| TCCAAATCGAGAAAGTAATG+AGG | - | chr8_3:16348831-16348850 | None:intergenic | 35.0% | |
| ! | TAGACAATGTGCCTGAATTT+TGG | + | chr8_3:16348877-16348896 | Msa1279410:CDS | 35.0% |
| AGAGGATTCGAATGATGTAT+GGG | + | chr8_3:16348995-16349014 | Msa1279410:CDS | 35.0% | |
| TGCTCACACATAGAAGAAAA+AGG | - | chr8_3:16349050-16349069 | None:intergenic | 35.0% | |
| AAACCTCGCAATTCAATTCT+CGG | - | chr8_3:16349140-16349159 | None:intergenic | 35.0% | |
| !!! | TGGTTGTTCTTTTGAAGTGT+GGG | + | chr8_3:16349183-16349202 | Msa1279410:CDS | 35.0% |
| ATATCTGCAATCCCAAATGA+TGG | + | chr8_3:16349335-16349354 | Msa1279410:CDS | 35.0% | |
| GTCAAGCTATTACCATCATT+TGG | - | chr8_3:16349350-16349369 | None:intergenic | 35.0% | |
| ! | TAGGTTTAAGATGGAAACTC+TGG | + | chr8_3:16349385-16349404 | Msa1279410:CDS | 35.0% |
| AGTCTTGGGTTCTGTATTAT+AGG | + | chr8_3:16349432-16349451 | Msa1279410:CDS | 35.0% | |
| AAAAAGCTAGAAAGAAGAGG+AGG | + | chr8_3:16349630-16349649 | Msa1279410:CDS | 35.0% | |
| ATCTGCCAAATGCTAAAAGT+TGG | + | chr8_3:16349726-16349745 | Msa1279410:CDS | 35.0% | |
| ! | AGCAACCAACTTTTAGCATT+TGG | - | chr8_3:16349734-16349753 | None:intergenic | 35.0% |
| !!! | GAATAGAGGGTTTTGAGTTT+GGG | - | chr8_3:16347619-16347638 | None:intergenic | 35.0% |
| !!! | TGAATAGAGGGTTTTGAGTT+TGG | - | chr8_3:16347620-16347639 | None:intergenic | 35.0% |
| TTGGAGTTACAGTGAATAGA+GGG | - | chr8_3:16347632-16347651 | None:intergenic | 35.0% | |
| ! | AAAACTGAACCAAGCTTTTG+CGG | - | chr8_3:16347958-16347977 | None:intergenic | 35.0% |
| !!! | GTGCTTGAGATTTTTTTTGC+AGG | + | chr8_3:16347994-16348013 | Msa1279410:CDS | 35.0% |
| !!! | GCGTTGTTTTAGTGTATGTT+TGG | + | chr8_3:16348032-16348051 | Msa1279410:intron | 35.0% |
| !! | TCCGGTTAAAATTGAGTTGA+AGG | + | chr8_3:16348092-16348111 | Msa1279410:intron | 35.0% |
| ! | AATTTTGTCTCCTCCAAATG+TGG | + | chr8_3:16348253-16348272 | Msa1279410:intron | 35.0% |
| GGCTTATTTGAACTCATCTA+CGG | - | chr8_3:16348573-16348592 | None:intergenic | 35.0% | |
| ! | TTGCAGTGGTTTTCATTTCA+TGG | + | chr8_3:16348681-16348700 | Msa1279410:CDS | 35.0% |
| ! | GTGGTTTTCATTTCATGGAT+TGG | + | chr8_3:16348686-16348705 | Msa1279410:CDS | 35.0% |
| !! | TTCATTTCATGGATTGGAAC+AGG | + | chr8_3:16348692-16348711 | Msa1279410:CDS | 35.0% |
| !! | TCATTTCATGGATTGGAACA+GGG | + | chr8_3:16348693-16348712 | Msa1279410:CDS | 35.0% |
| TCCAAATCGAGAAAGTAATG+AGG | - | chr8_3:16348831-16348850 | None:intergenic | 35.0% | |
| ! | TAGACAATGTGCCTGAATTT+TGG | + | chr8_3:16348877-16348896 | Msa1279410:CDS | 35.0% |
| AGAGGATTCGAATGATGTAT+GGG | + | chr8_3:16348995-16349014 | Msa1279410:CDS | 35.0% | |
| TGCTCACACATAGAAGAAAA+AGG | - | chr8_3:16349050-16349069 | None:intergenic | 35.0% | |
| AAACCTCGCAATTCAATTCT+CGG | - | chr8_3:16349140-16349159 | None:intergenic | 35.0% | |
| !!! | TGGTTGTTCTTTTGAAGTGT+GGG | + | chr8_3:16349183-16349202 | Msa1279410:CDS | 35.0% |
| ATATCTGCAATCCCAAATGA+TGG | + | chr8_3:16349335-16349354 | Msa1279410:CDS | 35.0% | |
| GTCAAGCTATTACCATCATT+TGG | - | chr8_3:16349350-16349369 | None:intergenic | 35.0% | |
| ! | TAGGTTTAAGATGGAAACTC+TGG | + | chr8_3:16349385-16349404 | Msa1279410:CDS | 35.0% |
| AGTCTTGGGTTCTGTATTAT+AGG | + | chr8_3:16349432-16349451 | Msa1279410:CDS | 35.0% | |
| AAAAAGCTAGAAAGAAGAGG+AGG | + | chr8_3:16349630-16349649 | Msa1279410:CDS | 35.0% | |
| ATCTGCCAAATGCTAAAAGT+TGG | + | chr8_3:16349726-16349745 | Msa1279410:CDS | 35.0% | |
| ! | AGCAACCAACTTTTAGCATT+TGG | - | chr8_3:16349734-16349753 | None:intergenic | 35.0% |
| AAATGAAGGGAAGTTCGATG+GGG | - | chr8_3:16347585-16347604 | None:intergenic | 40.0% | |
| GAAATGAAGGGAAGTTCGAT+GGG | - | chr8_3:16347586-16347605 | None:intergenic | 40.0% | |
| AGAAATGAAGGGAAGTTCGA+TGG | - | chr8_3:16347587-16347606 | None:intergenic | 40.0% | |
| GTTGGAGTTACAGTGAATAG+AGG | - | chr8_3:16347633-16347652 | None:intergenic | 40.0% | |
| !! | TCATTTTTCGAAGGTGGAGT+TGG | - | chr8_3:16347651-16347670 | None:intergenic | 40.0% |
| !! | GGTTGATCATTTTTCGAAGG+TGG | - | chr8_3:16347657-16347676 | None:intergenic | 40.0% |
| ! | GAGTGGGTTCTGATATGAAT+AGG | - | chr8_3:16347678-16347697 | None:intergenic | 40.0% |
| ACTTCGAATCCACCTATTGA+AGG | + | chr8_3:16347735-16347754 | Msa1279410:CDS | 40.0% | |
| AATCCACCTATTGAAGGAAC+TGG | + | chr8_3:16347741-16347760 | Msa1279410:CDS | 40.0% | |
| TTTCCAGTTCCTTCAATAGG+TGG | - | chr8_3:16347747-16347766 | None:intergenic | 40.0% | |
| GGCAAAACTAATCCTACTCT+AGG | + | chr8_3:16348191-16348210 | Msa1279410:intron | 40.0% | |
| ! | TGTGTGTTTGGTTCCACATT+TGG | - | chr8_3:16348269-16348288 | None:intergenic | 40.0% |
| !! | GCTGTTTTCGTAAGCTATCT+AGG | + | chr8_3:16348456-16348475 | Msa1279410:intron | 40.0% |
| !! | CATTTCATGGATTGGAACAG+GGG | + | chr8_3:16348694-16348713 | Msa1279410:CDS | 40.0% |
| ! | GGATATTTGTTGGGAAGAGT+TGG | + | chr8_3:16348758-16348777 | Msa1279410:CDS | 40.0% |
| TTGGAGTGGAAAGGAAAACA+TGG | + | chr8_3:16348777-16348796 | Msa1279410:CDS | 40.0% | |
| GCCTCATTACTTTCTCGATT+TGG | + | chr8_3:16348827-16348846 | Msa1279410:CDS | 40.0% | |
| GTTTCTGAGTCTGTGAAAGA+CGG | + | chr8_3:16348912-16348931 | Msa1279410:CDS | 40.0% | |
| GAGAGGATTCGAATGATGTA+TGG | + | chr8_3:16348994-16349013 | Msa1279410:CDS | 40.0% | |
| !! | GCAGGATTTGTGTTACTTTG+TGG | + | chr8_3:16349091-16349110 | Msa1279410:CDS | 40.0% |
| AACCTCGCAATTCAATTCTC+GGG | - | chr8_3:16349139-16349158 | None:intergenic | 40.0% | |
| GAGAATTGAATTGCGAGGTT+TGG | + | chr8_3:16349139-16349158 | Msa1279410:CDS | 40.0% | |
| ! | GAGGTTTGGATGATTTGTCT+CGG | + | chr8_3:16349153-16349172 | Msa1279410:CDS | 40.0% |
| ! | TGATTTGTCTCGGTTGTTTG+TGG | + | chr8_3:16349163-16349182 | Msa1279410:CDS | 40.0% |
| !!! | GTGGTTGTTCTTTTGAAGTG+TGG | + | chr8_3:16349182-16349201 | Msa1279410:CDS | 40.0% |
| !!! | GGTTGTTCTTTTGAAGTGTG+GGG | + | chr8_3:16349184-16349203 | Msa1279410:CDS | 40.0% |
| ! | TAAGATGGAAACTCTGGAAG+TGG | + | chr8_3:16349391-16349410 | Msa1279410:CDS | 40.0% |
| ATGCATGTTTACCAGAGTTG+CGG | - | chr8_3:16349523-16349542 | None:intergenic | 40.0% | |
| CATGCATTGTTAGATGAGGA+TGG | + | chr8_3:16349536-16349555 | Msa1279410:CDS | 40.0% | |
| TTGTCAGACGAAGATTGTTC+TGG | + | chr8_3:16349563-16349582 | Msa1279410:CDS | 40.0% | |
| !!! | GATTGTTCTGGTTTTGATCG+TGG | + | chr8_3:16349575-16349594 | Msa1279410:CDS | 40.0% |
| ! | TGATTTTGCTAGCCAGAAGT+TGG | + | chr8_3:16349700-16349719 | Msa1279410:CDS | 40.0% |
| TTGGCAGATAATCCAACTTC+TGG | - | chr8_3:16349715-16349734 | None:intergenic | 40.0% | |
| AAATGAAGGGAAGTTCGATG+GGG | - | chr8_3:16347585-16347604 | None:intergenic | 40.0% | |
| GAAATGAAGGGAAGTTCGAT+GGG | - | chr8_3:16347586-16347605 | None:intergenic | 40.0% | |
| AGAAATGAAGGGAAGTTCGA+TGG | - | chr8_3:16347587-16347606 | None:intergenic | 40.0% | |
| GTTGGAGTTACAGTGAATAG+AGG | - | chr8_3:16347633-16347652 | None:intergenic | 40.0% | |
| !! | TCATTTTTCGAAGGTGGAGT+TGG | - | chr8_3:16347651-16347670 | None:intergenic | 40.0% |
| !! | GGTTGATCATTTTTCGAAGG+TGG | - | chr8_3:16347657-16347676 | None:intergenic | 40.0% |
| ! | GAGTGGGTTCTGATATGAAT+AGG | - | chr8_3:16347678-16347697 | None:intergenic | 40.0% |
| ACTTCGAATCCACCTATTGA+AGG | + | chr8_3:16347735-16347754 | Msa1279410:CDS | 40.0% | |
| AATCCACCTATTGAAGGAAC+TGG | + | chr8_3:16347741-16347760 | Msa1279410:CDS | 40.0% | |
| TTTCCAGTTCCTTCAATAGG+TGG | - | chr8_3:16347747-16347766 | None:intergenic | 40.0% | |
| GGCAAAACTAATCCTACTCT+AGG | + | chr8_3:16348191-16348210 | Msa1279410:intron | 40.0% | |
| ! | TGTGTGTTTGGTTCCACATT+TGG | - | chr8_3:16348269-16348288 | None:intergenic | 40.0% |
| !! | GCTGTTTTCGTAAGCTATCT+AGG | + | chr8_3:16348456-16348475 | Msa1279410:intron | 40.0% |
| !! | CATTTCATGGATTGGAACAG+GGG | + | chr8_3:16348694-16348713 | Msa1279410:CDS | 40.0% |
| ! | GGATATTTGTTGGGAAGAGT+TGG | + | chr8_3:16348758-16348777 | Msa1279410:CDS | 40.0% |
| TTGGAGTGGAAAGGAAAACA+TGG | + | chr8_3:16348777-16348796 | Msa1279410:CDS | 40.0% | |
| GCCTCATTACTTTCTCGATT+TGG | + | chr8_3:16348827-16348846 | Msa1279410:CDS | 40.0% | |
| GTTTCTGAGTCTGTGAAAGA+CGG | + | chr8_3:16348912-16348931 | Msa1279410:CDS | 40.0% | |
| GAGAGGATTCGAATGATGTA+TGG | + | chr8_3:16348994-16349013 | Msa1279410:CDS | 40.0% | |
| !! | GCAGGATTTGTGTTACTTTG+TGG | + | chr8_3:16349091-16349110 | Msa1279410:CDS | 40.0% |
| AACCTCGCAATTCAATTCTC+GGG | - | chr8_3:16349139-16349158 | None:intergenic | 40.0% | |
| GAGAATTGAATTGCGAGGTT+TGG | + | chr8_3:16349139-16349158 | Msa1279410:CDS | 40.0% | |
| ! | GAGGTTTGGATGATTTGTCT+CGG | + | chr8_3:16349153-16349172 | Msa1279410:CDS | 40.0% |
| ! | TGATTTGTCTCGGTTGTTTG+TGG | + | chr8_3:16349163-16349182 | Msa1279410:CDS | 40.0% |
| !!! | GTGGTTGTTCTTTTGAAGTG+TGG | + | chr8_3:16349182-16349201 | Msa1279410:CDS | 40.0% |
| !!! | GGTTGTTCTTTTGAAGTGTG+GGG | + | chr8_3:16349184-16349203 | Msa1279410:CDS | 40.0% |
| ! | TAAGATGGAAACTCTGGAAG+TGG | + | chr8_3:16349391-16349410 | Msa1279410:CDS | 40.0% |
| ATGCATGTTTACCAGAGTTG+CGG | - | chr8_3:16349523-16349542 | None:intergenic | 40.0% | |
| CATGCATTGTTAGATGAGGA+TGG | + | chr8_3:16349536-16349555 | Msa1279410:CDS | 40.0% | |
| TTGTCAGACGAAGATTGTTC+TGG | + | chr8_3:16349563-16349582 | Msa1279410:CDS | 40.0% | |
| !!! | GATTGTTCTGGTTTTGATCG+TGG | + | chr8_3:16349575-16349594 | Msa1279410:CDS | 40.0% |
| ! | TGATTTTGCTAGCCAGAAGT+TGG | + | chr8_3:16349700-16349719 | Msa1279410:CDS | 40.0% |
| TTGGCAGATAATCCAACTTC+TGG | - | chr8_3:16349715-16349734 | None:intergenic | 40.0% | |
| CGTGTGATTTGAAGAAGCAG+CGG | - | chr8_3:16347494-16347513 | None:intergenic | 45.0% | |
| GAGGAAGAAGATGATAGGCA+CGG | - | chr8_3:16347543-16347562 | None:intergenic | 45.0% | |
| ATGGGGTGAAAACCCTAATG+CGG | - | chr8_3:16347568-16347587 | None:intergenic | 45.0% | |
| ! | TTTGCGTCGTTGTTTCGAGT+GGG | - | chr8_3:16347694-16347713 | None:intergenic | 45.0% |
| CGGTTTCCAGTTCCTTCAAT+AGG | - | chr8_3:16347750-16347769 | None:intergenic | 45.0% | |
| AAAATTTCACGCTGGTCACG+AGG | - | chr8_3:16347859-16347878 | None:intergenic | 45.0% | |
| GATAACTCACCGCAAAAGCT+TGG | + | chr8_3:16347946-16347965 | Msa1279410:CDS | 45.0% | |
| !! | AGTGTATGTTTGGTTCTGCG+TGG | + | chr8_3:16348042-16348061 | Msa1279410:intron | 45.0% |
| ! | GTGTTTGGTTCCACATTTGG+AGG | - | chr8_3:16348266-16348285 | None:intergenic | 45.0% |
| TGTGGAACCAAACACACACT+TGG | + | chr8_3:16348271-16348290 | Msa1279410:intron | 45.0% | |
| CAATACGGGCCTGTTTGAAT+TGG | - | chr8_3:16348594-16348613 | None:intergenic | 45.0% | |
| !! | ATGGATTGGAACAGGGGAAA+GGG | + | chr8_3:16348700-16348719 | Msa1279410:CDS | 45.0% |
| TTTGTTGGGAAGAGTTGGAG+TGG | + | chr8_3:16348763-16348782 | Msa1279410:CDS | 45.0% | |
| ACATGGACAATCACCTGCAA+TGG | + | chr8_3:16348794-16348813 | Msa1279410:CDS | 45.0% | |
| !!! | CTTTTGAAGTGTGGGGTTTC+TGG | + | chr8_3:16349191-16349210 | Msa1279410:CDS | 45.0% |
| ! | GGGTTTCTGGATCTATTGAC+TGG | + | chr8_3:16349204-16349223 | Msa1279410:CDS | 45.0% |
| TTGAATGCCGTCATAGCTCA+GGG | + | chr8_3:16349236-16349255 | Msa1279410:CDS | 45.0% | |
| AGTGTCTTGGACTTCAGTCT+TGG | + | chr8_3:16349417-16349436 | Msa1279410:CDS | 45.0% | |
| GTGTCTTGGACTTCAGTCTT+GGG | + | chr8_3:16349418-16349437 | Msa1279410:CDS | 45.0% | |
| AAGCTAGAAAGAAGAGGAGG+AGG | + | chr8_3:16349633-16349652 | Msa1279410:CDS | 45.0% | |
| AGCTAGAAAGAAGAGGAGGA+GGG | + | chr8_3:16349634-16349653 | Msa1279410:CDS | 45.0% | |
| ! | AGGAGGGCATATGATTACGA+TGG | + | chr8_3:16349650-16349669 | Msa1279410:CDS | 45.0% |
| CGTGTGATTTGAAGAAGCAG+CGG | - | chr8_3:16347494-16347513 | None:intergenic | 45.0% | |
| GAGGAAGAAGATGATAGGCA+CGG | - | chr8_3:16347543-16347562 | None:intergenic | 45.0% | |
| ATGGGGTGAAAACCCTAATG+CGG | - | chr8_3:16347568-16347587 | None:intergenic | 45.0% | |
| ! | TTTGCGTCGTTGTTTCGAGT+GGG | - | chr8_3:16347694-16347713 | None:intergenic | 45.0% |
| CGGTTTCCAGTTCCTTCAAT+AGG | - | chr8_3:16347750-16347769 | None:intergenic | 45.0% | |
| AAAATTTCACGCTGGTCACG+AGG | - | chr8_3:16347859-16347878 | None:intergenic | 45.0% | |
| GATAACTCACCGCAAAAGCT+TGG | + | chr8_3:16347946-16347965 | Msa1279410:CDS | 45.0% | |
| !! | AGTGTATGTTTGGTTCTGCG+TGG | + | chr8_3:16348042-16348061 | Msa1279410:intron | 45.0% |
| ! | GTGTTTGGTTCCACATTTGG+AGG | - | chr8_3:16348266-16348285 | None:intergenic | 45.0% |
| TGTGGAACCAAACACACACT+TGG | + | chr8_3:16348271-16348290 | Msa1279410:intron | 45.0% | |
| CAATACGGGCCTGTTTGAAT+TGG | - | chr8_3:16348594-16348613 | None:intergenic | 45.0% | |
| !! | ATGGATTGGAACAGGGGAAA+GGG | + | chr8_3:16348700-16348719 | Msa1279410:CDS | 45.0% |
| TTTGTTGGGAAGAGTTGGAG+TGG | + | chr8_3:16348763-16348782 | Msa1279410:CDS | 45.0% | |
| ACATGGACAATCACCTGCAA+TGG | + | chr8_3:16348794-16348813 | Msa1279410:CDS | 45.0% | |
| !!! | CTTTTGAAGTGTGGGGTTTC+TGG | + | chr8_3:16349191-16349210 | Msa1279410:CDS | 45.0% |
| ! | GGGTTTCTGGATCTATTGAC+TGG | + | chr8_3:16349204-16349223 | Msa1279410:CDS | 45.0% |
| TTGAATGCCGTCATAGCTCA+GGG | + | chr8_3:16349236-16349255 | Msa1279410:CDS | 45.0% | |
| AGTGTCTTGGACTTCAGTCT+TGG | + | chr8_3:16349417-16349436 | Msa1279410:CDS | 45.0% | |
| GTGTCTTGGACTTCAGTCTT+GGG | + | chr8_3:16349418-16349437 | Msa1279410:CDS | 45.0% | |
| AAGCTAGAAAGAAGAGGAGG+AGG | + | chr8_3:16349633-16349652 | Msa1279410:CDS | 45.0% | |
| AGCTAGAAAGAAGAGGAGGA+GGG | + | chr8_3:16349634-16349653 | Msa1279410:CDS | 45.0% | |
| ! | AGGAGGGCATATGATTACGA+TGG | + | chr8_3:16349650-16349669 | Msa1279410:CDS | 45.0% |
| CGGTGGAGGAAGAAGATGAT+AGG | - | chr8_3:16347548-16347567 | None:intergenic | 50.0% | |
| TCTTCTTCCTCCACCGCATT+AGG | + | chr8_3:16347552-16347571 | Msa1279410:five_prime_UTR | 50.0% | |
| CTTCTTCCTCCACCGCATTA+GGG | + | chr8_3:16347553-16347572 | Msa1279410:five_prime_UTR | 50.0% | |
| TGAAAACCCTAATGCGGTGG+AGG | - | chr8_3:16347562-16347581 | None:intergenic | 50.0% | |
| ! | GTTTGCGTCGTTGTTTCGAG+TGG | - | chr8_3:16347695-16347714 | None:intergenic | 50.0% |
| AGGAACTGGAAACCGTTCTC+TGG | + | chr8_3:16347755-16347774 | Msa1279410:CDS | 50.0% | |
| GATTATCGCGGACCAGAGAA+CGG | - | chr8_3:16347770-16347789 | None:intergenic | 50.0% | |
| TGGTCCGCGATAATCTCTTC+CGG | + | chr8_3:16347775-16347794 | Msa1279410:CDS | 50.0% | |
| !! | TGAATCCCGCGATGGTTTTG+CGG | - | chr8_3:16347825-16347844 | None:intergenic | 50.0% |
| GCGAGATCGTGCTTCTTCTT+TGG | - | chr8_3:16347901-16347920 | None:intergenic | 50.0% | |
| AACAGGGCCAAGTGTGTGTT+TGG | - | chr8_3:16348281-16348300 | None:intergenic | 50.0% | |
| ACCACTGCAACACACGCTTA+GGG | - | chr8_3:16348671-16348690 | None:intergenic | 50.0% | |
| AACCACTGCAACACACGCTT+AGG | - | chr8_3:16348672-16348691 | None:intergenic | 50.0% | |
| !! | CATGGATTGGAACAGGGGAA+AGG | + | chr8_3:16348699-16348718 | Msa1279410:CDS | 50.0% |
| TGGGAAGAGTTGGAGTGGAA+AGG | + | chr8_3:16348768-16348787 | Msa1279410:CDS | 50.0% | |
| ! | GGCTTTGTAGCAACCATTGC+AGG | - | chr8_3:16348810-16348829 | None:intergenic | 50.0% |
| GACCCGAGAATTGAATTGCG+AGG | + | chr8_3:16349134-16349153 | Msa1279410:CDS | 50.0% | |
| GTTGAATGCCGTCATAGCTC+AGG | + | chr8_3:16349235-16349254 | Msa1279410:CDS | 50.0% | |
| TGAATGCCGTCATAGCTCAG+GGG | + | chr8_3:16349237-16349256 | Msa1279410:CDS | 50.0% | |
| ! | AAGGCTTTTGCGTGACGAAG+AGG | + | chr8_3:16349271-16349290 | Msa1279410:CDS | 50.0% |
| ! | CTGGAAGTGGTGAAGTGTCT+TGG | + | chr8_3:16349404-16349423 | Msa1279410:CDS | 50.0% |
| ! | ATGCAAAAAGACGGACTCCC+AGG | - | chr8_3:16349486-16349505 | None:intergenic | 50.0% |
| !! | CAGATTGGTTTCCGCAACTC+TGG | + | chr8_3:16349509-16349528 | Msa1279410:CDS | 50.0% |
| CTGACGAGTACTCTTCTGCA+TGG | + | chr8_3:16349759-16349778 | Msa1279410:CDS | 50.0% | |
| CGGTGGAGGAAGAAGATGAT+AGG | - | chr8_3:16347548-16347567 | None:intergenic | 50.0% | |
| TCTTCTTCCTCCACCGCATT+AGG | + | chr8_3:16347552-16347571 | Msa1279410:five_prime_UTR | 50.0% | |
| CTTCTTCCTCCACCGCATTA+GGG | + | chr8_3:16347553-16347572 | Msa1279410:five_prime_UTR | 50.0% | |
| TGAAAACCCTAATGCGGTGG+AGG | - | chr8_3:16347562-16347581 | None:intergenic | 50.0% | |
| ! | GTTTGCGTCGTTGTTTCGAG+TGG | - | chr8_3:16347695-16347714 | None:intergenic | 50.0% |
| AGGAACTGGAAACCGTTCTC+TGG | + | chr8_3:16347755-16347774 | Msa1279410:CDS | 50.0% | |
| GATTATCGCGGACCAGAGAA+CGG | - | chr8_3:16347770-16347789 | None:intergenic | 50.0% | |
| TGGTCCGCGATAATCTCTTC+CGG | + | chr8_3:16347775-16347794 | Msa1279410:CDS | 50.0% | |
| !! | TGAATCCCGCGATGGTTTTG+CGG | - | chr8_3:16347825-16347844 | None:intergenic | 50.0% |
| GCGAGATCGTGCTTCTTCTT+TGG | - | chr8_3:16347901-16347920 | None:intergenic | 50.0% | |
| AACAGGGCCAAGTGTGTGTT+TGG | - | chr8_3:16348281-16348300 | None:intergenic | 50.0% | |
| ACCACTGCAACACACGCTTA+GGG | - | chr8_3:16348671-16348690 | None:intergenic | 50.0% | |
| AACCACTGCAACACACGCTT+AGG | - | chr8_3:16348672-16348691 | None:intergenic | 50.0% | |
| !! | CATGGATTGGAACAGGGGAA+AGG | + | chr8_3:16348699-16348718 | Msa1279410:CDS | 50.0% |
| TGGGAAGAGTTGGAGTGGAA+AGG | + | chr8_3:16348768-16348787 | Msa1279410:CDS | 50.0% | |
| ! | GGCTTTGTAGCAACCATTGC+AGG | - | chr8_3:16348810-16348829 | None:intergenic | 50.0% |
| GACCCGAGAATTGAATTGCG+AGG | + | chr8_3:16349134-16349153 | Msa1279410:CDS | 50.0% | |
| GTTGAATGCCGTCATAGCTC+AGG | + | chr8_3:16349235-16349254 | Msa1279410:CDS | 50.0% | |
| TGAATGCCGTCATAGCTCAG+GGG | + | chr8_3:16349237-16349256 | Msa1279410:CDS | 50.0% | |
| ! | AAGGCTTTTGCGTGACGAAG+AGG | + | chr8_3:16349271-16349290 | Msa1279410:CDS | 50.0% |
| ! | CTGGAAGTGGTGAAGTGTCT+TGG | + | chr8_3:16349404-16349423 | Msa1279410:CDS | 50.0% |
| ! | ATGCAAAAAGACGGACTCCC+AGG | - | chr8_3:16349486-16349505 | None:intergenic | 50.0% |
| !! | CAGATTGGTTTCCGCAACTC+TGG | + | chr8_3:16349509-16349528 | Msa1279410:CDS | 50.0% |
| CTGACGAGTACTCTTCTGCA+TGG | + | chr8_3:16349759-16349778 | Msa1279410:CDS | 50.0% | |
| ! | TGATAGGCACGGCGTCGTTT+TGG | - | chr8_3:16347532-16347551 | None:intergenic | 55.0% |
| GGGTGAAAACCCTAATGCGG+TGG | - | chr8_3:16347565-16347584 | None:intergenic | 55.0% | |
| CGAAACAACGACGCAAACGC+AGG | + | chr8_3:16347697-16347716 | Msa1279410:CDS | 55.0% | |
| GCGACCGGAAGAGATTATCG+CGG | - | chr8_3:16347782-16347801 | None:intergenic | 55.0% | |
| GATGCAGTTGAATCCCGCGA+TGG | - | chr8_3:16347833-16347852 | None:intergenic | 55.0% | |
| ACCCTAAGCGTGTGTTGCAG+TGG | + | chr8_3:16348667-16348686 | Msa1279410:CDS | 55.0% | |
| TTTGCGTGACGAAGAGGCCA+AGG | + | chr8_3:16349277-16349296 | Msa1279410:CDS | 55.0% | |
| AGTGCAAGACTCCTGAGTCC+TGG | + | chr8_3:16349465-16349484 | Msa1279410:CDS | 55.0% | |
| GTGCAAGACTCCTGAGTCCT+GGG | + | chr8_3:16349466-16349485 | Msa1279410:CDS | 55.0% | |
| ! | TGATAGGCACGGCGTCGTTT+TGG | - | chr8_3:16347532-16347551 | None:intergenic | 55.0% |
| GGGTGAAAACCCTAATGCGG+TGG | - | chr8_3:16347565-16347584 | None:intergenic | 55.0% | |
| CGAAACAACGACGCAAACGC+AGG | + | chr8_3:16347697-16347716 | Msa1279410:CDS | 55.0% | |
| GCGACCGGAAGAGATTATCG+CGG | - | chr8_3:16347782-16347801 | None:intergenic | 55.0% | |
| GATGCAGTTGAATCCCGCGA+TGG | - | chr8_3:16347833-16347852 | None:intergenic | 55.0% | |
| ACCCTAAGCGTGTGTTGCAG+TGG | + | chr8_3:16348667-16348686 | Msa1279410:CDS | 55.0% | |
| TTTGCGTGACGAAGAGGCCA+AGG | + | chr8_3:16349277-16349296 | Msa1279410:CDS | 55.0% | |
| AGTGCAAGACTCCTGAGTCC+TGG | + | chr8_3:16349465-16349484 | Msa1279410:CDS | 55.0% | |
| GTGCAAGACTCCTGAGTCCT+GGG | + | chr8_3:16349466-16349485 | Msa1279410:CDS | 55.0% | |
| CATTCGAGCTTCTGCGCGAC+CGG | - | chr8_3:16347797-16347816 | None:intergenic | 60.0% | |
| GTCGCGCAGAAGCTCGAATG+TGG | + | chr8_3:16347797-16347816 | Msa1279410:CDS | 60.0% | |
| GTGGCTCCGCAAAACCATCG+CGG | + | chr8_3:16347816-16347835 | Msa1279410:CDS | 60.0% | |
| TGGCTCCGCAAAACCATCGC+GGG | + | chr8_3:16347817-16347836 | Msa1279410:CDS | 60.0% | |
| ATGCCGTCATAGCTCAGGGG+CGG | + | chr8_3:16349240-16349259 | Msa1279410:CDS | 60.0% | |
| GACTTTCGCCAGCGACTCCT+TGG | - | chr8_3:16349297-16349316 | None:intergenic | 60.0% | |
| ! | AAGACGGACTCCCAGGACTC+AGG | - | chr8_3:16349479-16349498 | None:intergenic | 60.0% |
| CATTCGAGCTTCTGCGCGAC+CGG | - | chr8_3:16347797-16347816 | None:intergenic | 60.0% | |
| GTCGCGCAGAAGCTCGAATG+TGG | + | chr8_3:16347797-16347816 | Msa1279410:CDS | 60.0% | |
| GTGGCTCCGCAAAACCATCG+CGG | + | chr8_3:16347816-16347835 | Msa1279410:CDS | 60.0% | |
| TGGCTCCGCAAAACCATCGC+GGG | + | chr8_3:16347817-16347836 | Msa1279410:CDS | 60.0% | |
| ATGCCGTCATAGCTCAGGGG+CGG | + | chr8_3:16349240-16349259 | Msa1279410:CDS | 60.0% | |
| GACTTTCGCCAGCGACTCCT+TGG | - | chr8_3:16349297-16349316 | None:intergenic | 60.0% | |
| ! | AAGACGGACTCCCAGGACTC+AGG | - | chr8_3:16349479-16349498 | None:intergenic | 60.0% |
| CTGCCGCCCCTGAGCTATGA+CGG | - | chr8_3:16349246-16349265 | None:intergenic | 65.0% | |
| CTCAGGGGCGGCAGCTTCTA+AGG | + | chr8_3:16349252-16349271 | Msa1279410:CDS | 65.0% | |
| CGAAGAGGCCAAGGAGTCGC+TGG | + | chr8_3:16349286-16349305 | Msa1279410:CDS | 65.0% | |
| CTGCCGCCCCTGAGCTATGA+CGG | - | chr8_3:16349246-16349265 | None:intergenic | 65.0% | |
| CTCAGGGGCGGCAGCTTCTA+AGG | + | chr8_3:16349252-16349271 | Msa1279410:CDS | 65.0% | |
| CGAAGAGGCCAAGGAGTCGC+TGG | + | chr8_3:16349286-16349305 | Msa1279410:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 16347452 | 16349826 | 16347452 | ID=Msa1279410;Name=Msa1279410 |
| chr8_3 | mRNA | 16347452 | 16349826 | 16347452 | ID=Msa1279410-mRNA-1;Parent=Msa1279410;Name=Msa1279410-mRNA-1;_AED=0.12;_eAED=0.12;_QI=215|1|0.5|1|1|1|2|0|503 |
| chr8_3 | exon | 16347452 | 16348015 | 16347452 | ID=Msa1279410-mRNA-1:exon:6408;Parent=Msa1279410-mRNA-1 |
| chr8_3 | exon | 16348664 | 16349826 | 16348664 | ID=Msa1279410-mRNA-1:exon:6409;Parent=Msa1279410-mRNA-1 |
| chr8_3 | five_prime_UTR | 16347452 | 16347666 | 16347452 | ID=Msa1279410-mRNA-1:five_prime_utr;Parent=Msa1279410-mRNA-1 |
| chr8_3 | CDS | 16347667 | 16348015 | 16347667 | ID=Msa1279410-mRNA-1:cds;Parent=Msa1279410-mRNA-1 |
| chr8_3 | CDS | 16348664 | 16349826 | 16348664 | ID=Msa1279410-mRNA-1:cds;Parent=Msa1279410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
