AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1279580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1279580 MtrunA17_Chr8g0369691 94.737 209 11 0 9 217 294 502 2.39e-139 399
Msa1279580 MtrunA17_Chr5g0408871 78.341 217 45 1 1 215 344 560 1.83e-109 325
Msa1279580 MtrunA17_Chr4g0065171 60.000 110 34 3 100 206 428 530 8.97e-39 140
Msa1279580 MtrunA17_Chr1g0203541 45.205 73 34 3 138 205 110 181 4.34e-15 71.2
Msa1279580 MtrunA17_Chr5g0405931 53.191 47 22 0 156 202 53 99 5.09e-14 66.6
Msa1279580 MtrunA17_Chr8g0383941 35.766 137 73 6 79 202 42 176 1.23e-13 67.4
Msa1279580 MtrunA17_Chr1g0198201 46.154 65 33 2 139 202 67 130 1.24e-13 67.4
Msa1279580 MtrunA17_Chr3g0121201 38.202 89 45 3 130 217 214 293 5.18e-13 67.0
Msa1279580 MtrunA17_Chr3g0113811 37.624 101 53 5 117 212 63 158 1.00e-12 63.9
Msa1279580 MtrunA17_Chr5g0427431 45.205 73 37 3 138 209 139 209 1.04e-12 66.2
Msa1279580 MtrunA17_Chr4g0073141 41.429 70 39 2 137 205 121 189 1.07e-12 66.6
Msa1279580 MtrunA17_Chr5g0417501 28.571 126 82 3 79 202 37 156 1.34e-12 64.7
Msa1279580 MtrunA17_Chr3g0128771 45.588 68 34 3 137 202 95 161 1.45e-12 63.5
Msa1279580 MtrunA17_Chr8g0381731 40.909 88 48 4 119 205 135 219 2.29e-12 64.7
Msa1279580 MtrunA17_Chr1g0177041 48.529 68 31 3 138 202 79 145 2.75e-12 62.8
Msa1279580 MtrunA17_Chr1g0171061 41.176 68 34 2 147 214 45 106 3.22e-12 62.0
Msa1279580 MtrunA17_Chr1g0148631 54.902 51 21 2 155 205 337 385 3.52e-12 64.7
Msa1279580 MtrunA17_Chr6g0470751 31.092 119 75 5 92 205 55 171 4.14e-12 64.3
Msa1279580 MtrunA17_Chr4g0057351 55.357 56 23 2 155 210 312 365 5.91e-12 63.9
Msa1279580 MtrunA17_Chr7g0246571 55.357 56 23 2 155 210 308 361 7.06e-12 63.9
Msa1279580 MtrunA17_Chr3g0124531 50.000 46 23 0 160 205 69 114 7.64e-12 61.2
Msa1279580 MtrunA17_Chr5g0411081 52.941 51 22 2 156 205 144 193 7.81e-12 63.5
Msa1279580 MtrunA17_Chr8g0383871 47.692 65 32 2 139 202 118 181 7.85e-12 62.4
Msa1279580 MtrunA17_Chr8g0383881 31.250 144 76 5 78 202 33 172 8.11e-12 62.4
Msa1279580 MtrunA17_Chr8g0364881 42.647 68 36 3 139 205 74 139 8.34e-12 63.5
Msa1279580 MtrunA17_Chr8g0383921 47.692 65 32 2 139 202 117 180 8.77e-12 62.0
Msa1279580 MtrunA17_Chr5g0407431 46.269 67 33 3 138 202 82 147 8.79e-12 62.4
Msa1279580 MtrunA17_Chr6g0486651 43.836 73 38 3 138 209 98 168 1.01e-11 63.5
Msa1279580 MtrunA17_Chr1g0191601 36.111 72 42 3 137 205 102 172 1.13e-11 63.2
Msa1279580 MtrunA17_Chr2g0327791 35.417 96 40 4 131 205 86 180 1.29e-11 61.6
Msa1279580 MtrunA17_Chr8g0350741 39.506 81 43 4 130 206 60 138 1.38e-11 60.8
Msa1279580 MtrunA17_Chr7g0276591 45.588 68 29 4 138 202 81 143 1.70e-11 62.4
Msa1279580 MtrunA17_Chr5g0397921 53.846 52 22 2 154 205 327 376 1.89e-11 62.8
Msa1279580 MtrunA17_Chr1g0197031 41.250 80 41 5 138 213 77 154 2.11e-11 60.5
Msa1279580 MtrunA17_Chr1g0161291 54.902 51 21 2 155 205 295 343 2.17e-11 62.4
Msa1279580 MtrunA17_Chr3g0132491 36.620 71 41 3 138 205 112 181 2.22e-11 62.4
Msa1279580 MtrunA17_Chr5g0446921 49.091 55 27 1 148 202 282 335 2.50e-11 62.0
Msa1279580 MtrunA17_Chr8g0382811 31.624 117 62 4 108 209 6 119 2.70e-11 59.7
Msa1279580 MtrunA17_Chr7g0244851 45.070 71 28 4 142 207 90 154 2.73e-11 60.1
Msa1279580 MtrunA17_Chr3g0138451 50.980 51 23 2 155 205 313 361 2.95e-11 62.0
Msa1279580 MtrunA17_Chr3g0129671 54.545 55 20 3 149 202 128 178 3.02e-11 60.8
Msa1279580 MtrunA17_Chr6g0451031 41.176 68 36 3 139 205 50 114 3.23e-11 58.9
Msa1279580 MtrunA17_Chr5g0425981 44.643 56 30 1 147 202 45 99 3.27e-11 58.9
Msa1279580 MtrunA17_Chr4g0031911 48.077 52 26 1 154 205 203 253 3.70e-11 61.2
Msa1279580 MtrunA17_Chr1g0200721 33.846 65 43 0 138 202 213 277 4.53e-11 61.6
Msa1279580 MtrunA17_Chr3g0118071 42.647 68 36 3 137 202 80 146 4.88e-11 60.1
Msa1279580 MtrunA17_Chr7g0246761 37.879 66 39 2 138 202 68 132 4.99e-11 59.7
Msa1279580 MtrunA17_Chr4g0031921 51.020 49 23 1 154 202 203 250 5.90e-11 60.5
Msa1279580 MtrunA17_Chr5g0413841 40.580 69 38 3 138 205 121 187 6.23e-11 60.8
Msa1279580 MtrunA17_Chr4g0030831 42.254 71 38 3 137 205 88 157 7.09e-11 58.9
Msa1279580 MtrunA17_Chr3g0133001 41.791 67 36 3 137 202 134 198 8.12e-11 60.8
Msa1279580 MtrunA17_Chr3g0102761 53.191 47 21 1 156 202 283 328 8.34e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1279580 AT5G45290.1 67.299 211 62 4 4 209 331 539 1.41e-90 276
Msa1279580 AT5G45290.2 66.981 212 62 5 4 209 331 540 7.85e-89 272
Msa1279580 AT1G21960.1 50.000 70 34 1 133 202 131 199 4.98e-14 68.6
Msa1279580 AT1G35625.1 34.286 70 46 0 135 204 208 277 1.19e-13 68.9
Msa1279580 AT1G71980.1 34.667 75 49 0 138 212 210 284 4.73e-13 67.8
Msa1279580 AT1G35630.1 34.286 70 46 0 135 204 208 277 6.35e-13 67.0
Msa1279580 AT4G11680.1 62.745 51 17 2 155 205 334 382 6.55e-13 67.4
Msa1279580 AT5G05280.1 47.692 65 30 3 139 202 94 155 7.14e-13 64.7
Msa1279580 AT5G01880.1 61.702 47 16 2 157 202 102 147 9.68e-13 63.9
Msa1279580 AT3G19950.2 37.037 81 47 3 130 209 245 322 1.34e-12 66.2
Msa1279580 AT3G19950.3 37.037 81 47 3 130 209 245 322 1.34e-12 66.2
Msa1279580 AT3G19950.1 37.037 81 47 3 130 209 187 264 1.53e-12 65.9
Msa1279580 AT3G19910.1 37.838 74 45 1 137 210 265 337 1.90e-12 65.9
Msa1279580 AT4G11680.2 61.702 47 17 1 159 205 366 411 2.17e-12 65.9
Msa1279580 AT5G66160.1 39.706 68 40 1 138 205 211 277 2.55e-12 65.1
Msa1279580 AT3G16720.1 42.857 70 36 3 137 205 98 164 2.79e-12 65.1
Msa1279580 AT3G14320.1 40.244 82 45 3 138 218 68 146 2.82e-12 63.9
Msa1279580 AT1G23980.1 42.029 69 37 3 138 205 123 189 2.88e-12 65.5
Msa1279580 AT5G52155.1 46.667 60 31 1 146 205 123 181 3.05e-12 63.2
Msa1279580 AT1G12760.1 55.769 52 21 2 154 205 348 397 3.23e-12 65.5
Msa1279580 AT3G10910.1 42.667 75 40 3 139 212 94 166 3.78e-12 63.2
Msa1279580 AT5G66160.2 39.706 68 40 1 138 205 211 277 4.02e-12 64.3
Msa1279580 AT4G09560.1 32.911 79 52 1 135 212 209 287 4.09e-12 65.1
Msa1279580 AT1G12760.2 55.769 52 21 2 154 205 277 326 4.16e-12 64.7
Msa1279580 AT2G20030.1 42.466 73 39 3 138 209 103 173 4.30e-12 64.7
Msa1279580 AT4G09120.1 38.095 84 46 4 138 216 99 181 4.46e-12 64.7
Msa1279580 AT5G05810.1 43.284 67 35 3 137 202 124 188 4.49e-12 64.7
Msa1279580 AT1G20823.1 44.776 67 35 2 137 202 88 153 6.56e-12 62.8
Msa1279580 AT2G35420.1 43.939 66 34 3 138 202 82 145 8.44e-12 63.2
Msa1279580 AT3G61180.1 54.902 51 21 2 155 205 319 367 8.56e-12 63.9
Msa1279580 AT1G53820.1 51.923 52 23 2 155 205 115 165 1.08e-11 63.5
Msa1279580 AT4G26400.2 44.595 74 31 3 130 202 218 282 1.08e-11 63.5
Msa1279580 AT4G26400.1 44.595 74 31 3 130 202 218 282 1.08e-11 63.5
Msa1279580 AT2G01735.1 47.297 74 32 3 132 205 285 351 1.09e-11 63.5
Msa1279580 AT5G06490.1 43.056 72 33 3 138 202 101 171 1.11e-11 62.0
Msa1279580 AT1G76410.1 46.269 67 34 2 137 202 81 146 1.16e-11 61.6
Msa1279580 AT1G26800.1 27.692 130 83 4 76 202 33 154 1.23e-11 62.0
Msa1279580 AT4G09110.1 39.726 73 40 3 138 207 99 170 1.55e-11 62.8
Msa1279580 AT4G17245.1 41.791 67 38 1 140 205 82 148 1.67e-11 60.8
Msa1279580 AT1G80400.1 55.357 56 23 2 155 210 351 404 1.93e-11 63.2
Msa1279580 AT5G10380.1 36.364 88 50 3 126 212 105 187 2.00e-11 62.4
Msa1279580 AT3G18930.2 39.241 79 37 3 137 205 124 201 2.03e-11 62.8
Msa1279580 AT3G18930.3 39.241 79 37 3 137 205 124 201 2.03e-11 62.8
Msa1279580 AT3G18930.1 39.241 79 37 3 137 205 124 201 2.03e-11 62.8
Msa1279580 AT1G68070.1 56.863 51 20 2 155 205 288 336 2.14e-11 62.8
Msa1279580 AT1G72310.1 42.647 68 35 3 139 205 108 172 2.24e-11 62.4
Msa1279580 AT4G15975.1 41.333 75 38 4 131 202 47 118 2.30e-11 61.6
Msa1279580 AT5G52140.1 48.000 50 25 1 156 205 230 278 2.43e-11 62.0
Msa1279580 AT2G17450.1 50.980 51 23 2 153 202 95 144 2.74e-11 60.8
Msa1279580 AT1G18760.1 40.230 87 48 2 116 202 134 216 2.84e-11 61.2
Msa1279580 AT1G22670.1 37.500 64 40 0 139 202 211 274 3.07e-11 62.4
Msa1279580 AT4G38140.1 46.154 65 33 2 152 215 54 117 3.18e-11 59.7
Msa1279580 AT5G57750.1 39.130 69 40 2 137 204 99 166 3.77e-11 60.8
Msa1279580 AT5G56340.1 41.892 74 33 3 130 202 236 300 4.35e-11 62.0
Msa1279580 AT5G27420.1 38.462 78 44 3 138 212 100 176 5.16e-11 61.6
Msa1279580 AT2G25410.1 31.138 167 88 8 54 204 216 371 5.73e-11 61.6
Msa1279580 AT1G72200.1 38.028 71 40 3 138 205 120 189 6.24e-11 61.6
Msa1279580 AT5G55970.2 50.000 50 24 1 156 205 293 341 6.66e-11 61.2
Msa1279580 AT5G55970.1 50.000 50 24 1 156 205 293 341 6.66e-11 61.2
Msa1279580 AT3G61460.1 33.333 111 66 4 95 202 32 137 8.38e-11 58.9
Msa1279580 AT4G32600.1 52.941 51 22 2 155 205 359 407 8.71e-11 61.2
Msa1279580 AT4G32600.2 52.941 51 22 2 155 205 359 407 8.71e-11 61.2

Find 97 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTCGTTCAAGGAAAT+TGG 0.152045 8_3:-16661374 None:intergenic
CATCCTTCTGTATCTTCTAT+TGG 0.170412 8_3:+16661733 Msa1279580:CDS
TATTGTCTTGGAACATGTTC+TGG 0.223726 8_3:+16659757 Msa1279580:five_prime_UTR
GCATTTGACCTTATATTAAT+AGG 0.244877 8_3:-16660890 None:intergenic
CTACTAGTCGATTCCTTTCT+CGG 0.260477 8_3:+16660678 Msa1279580:intron
ATAGAAAATGATTGAACTTC+TGG 0.276207 8_3:-16663748 None:intergenic
CTCTTGTTGCAGAGGGAAAA+AGG 0.281468 8_3:-16661143 None:intergenic
TAATAAAGCTACCTCAAATA+AGG 0.291964 8_3:-16661596 None:intergenic
AATGAGAGGATGAAAGTAAA+AGG 0.300382 8_3:-16659487 None:intergenic
AGGTCAAATGCCTCAGGATT+AGG 0.313045 8_3:+16660902 Msa1279580:five_prime_UTR
TGTGATCAGAATAAAGTAAA+TGG 0.330122 8_3:+16660516 Msa1279580:intron
CATACTAGATAGAGGGTATC+TGG 0.338705 8_3:-16661263 None:intergenic
TATATGCCTTGTAGAGTATA+AGG 0.345652 8_3:+16662279 Msa1279580:CDS
GTATTCTTCTTCTTCGTTCA+AGG 0.354262 8_3:-16661381 None:intergenic
AACAATGTGTTGCATTGTTT+TGG 0.364662 8_3:-16659547 None:intergenic
CGTCCAACTCGGAACTTTAG+TGG 0.368904 8_3:+16663669 Msa1279580:CDS
ACGATATTCAGAATAATCTA+AGG 0.387524 8_3:+16661179 Msa1279580:five_prime_UTR
AGTCGATTCCTTTCTCGGTT+TGG 0.394328 8_3:+16660683 Msa1279580:intron
AAGATAAAACCACGGATTGC+TGG 0.400437 8_3:-16661708 None:intergenic
TCTCGGTTTGGCGTCACTCC+TGG 0.406664 8_3:+16660695 Msa1279580:five_prime_UTR
AAGATACTCCTATTAATATA+AGG 0.410567 8_3:+16660882 Msa1279580:five_prime_UTR
CTCTTCAGAGGTTGGGTAGC+CGG 0.412332 8_3:+16661419 Msa1279580:CDS
GGGTTTCATTCTTATTGTCT+TGG 0.416085 8_3:+16659745 Msa1279580:five_prime_UTR
GTCCGTTCTCTTCAGAGGTT+GGG 0.422816 8_3:+16661412 Msa1279580:CDS
AGGTAGGTATCAGGATCTAA+TGG 0.431610 8_3:+16661342 Msa1279580:CDS
AATGACTCCACAACATTGAT+AGG 0.435689 8_3:-16661769 None:intergenic
TTTCCTTGCATCGGTGGCAT+TGG 0.435884 8_3:+16660926 Msa1279580:five_prime_UTR
CAGGGTATGCCCACTATGTC+GGG 0.443572 8_3:+16663623 Msa1279580:intron
TCCAGACTTAGCATATTTCA+CGG 0.449495 8_3:+16660728 Msa1279580:five_prime_UTR
ATTGCGAGAAGGTAGGTATC+AGG 0.452326 8_3:+16661333 Msa1279580:CDS
ATCAAACTGCTACAAGGTCC+TGG 0.462429 8_3:-16660830 None:intergenic
GAGAGATCATGTATCTTGTC+TGG 0.471985 8_3:+16661463 Msa1279580:CDS
GGTCCGTTCTCTTCAGAGGT+TGG 0.473101 8_3:+16661411 Msa1279580:CDS
ACCGTGAAATATGCTAAGTC+TGG 0.473477 8_3:-16660729 None:intergenic
ATAGAACATGCATAGACAAA+TGG 0.475464 8_3:+16662344 Msa1279580:CDS
GAGAGTCTTGTAGAAGATAC+AGG 0.486657 8_3:-16660773 None:intergenic
TTTAGTCGAACTTTAAGTGT+TGG 0.497463 8_3:+16661073 Msa1279580:five_prime_UTR
CTCCATCCTTATACTCTACA+AGG 0.499147 8_3:-16662285 None:intergenic
GAGTTAGACATACTAGATAG+AGG 0.503213 8_3:-16661271 None:intergenic
GAGTGACGCCAAACCGAGAA+AGG 0.511012 8_3:-16660691 None:intergenic
CACTAGGAAAGTAGTTCTAA+AGG 0.511872 8_3:+16659715 Msa1279580:five_prime_UTR
AGTAGTTCTAAAGGACTGAA+AGG 0.517449 8_3:+16659724 Msa1279580:five_prime_UTR
TCCTGCACCTATCAATGTTG+TGG 0.520844 8_3:+16661762 Msa1279580:CDS
GATGTTACATGTGCTGATAA+TGG 0.524096 8_3:+16660543 Msa1279580:five_prime_UTR
CACAGGTCCGTTCTCTTCAG+AGG 0.525705 8_3:+16661407 Msa1279580:CDS
ACTTGCAGAAGCCTTATTTG+AGG 0.526249 8_3:+16661585 Msa1279580:CDS
GTAGCATCTTCTTGATGCTT+AGG 0.527100 8_3:-16661817 None:intergenic
GTAGTTCTAAAGGACTGAAA+GGG 0.529582 8_3:+16659725 Msa1279580:five_prime_UTR
ATGCATAGACAAATGGTTGA+AGG 0.530723 8_3:+16662351 Msa1279580:CDS
TCCACAACATTGATAGGTGC+AGG 0.531437 8_3:-16661763 None:intergenic
AGACATTTAGATCGGCGAAA+CGG 0.531768 8_3:+16661019 Msa1279580:five_prime_UTR
AGTTCTCTCTCTTGTTGCAG+AGG 0.532284 8_3:-16661151 None:intergenic
TTAGATTCTGGAAGATGGGT+CGG 0.533817 8_3:-16659601 None:intergenic
ATGTTAATCAAACTGCTACA+AGG 0.534912 8_3:-16660836 None:intergenic
AATATAAGGTCAAATGCCTC+AGG 0.537504 8_3:+16660896 Msa1279580:five_prime_UTR
AATGGTTGAAGGAGATTCAC+AGG 0.539284 8_3:+16662362 Msa1279580:CDS
AACTTCTCATATAACTTGAC+AGG 0.541026 8_3:-16661793 None:intergenic
CATTGGTGCAAGAGATGAGT+TGG 0.543000 8_3:+16660943 Msa1279580:five_prime_UTR
CAATAGAAGATACAGAAGGA+TGG 0.550238 8_3:-16661732 None:intergenic
CTATTAGCACTATGATCTGA+TGG 0.552053 8_3:-16661232 None:intergenic
GAATAATCTAAGGCAAACAT+TGG 0.553467 8_3:+16661189 Msa1279580:five_prime_UTR
AATAGAAGATACAGAAGGAT+GGG 0.553746 8_3:-16661731 None:intergenic
TTGAACGAAGAAGAAGAATA+CGG 0.557105 8_3:+16661383 Msa1279580:CDS
GTTCTCTCTCTTGTTGCAGA+GGG 0.557680 8_3:-16661150 None:intergenic
CTAATAGTAGCAAAGCCACT+AGG 0.564805 8_3:+16659699 Msa1279580:five_prime_UTR
TAATCTAAGGCAAACATTGG+AGG 0.566240 8_3:+16661192 Msa1279580:five_prime_UTR
ATCTCAAGACAGTGATAATG+AGG 0.569153 8_3:+16659780 Msa1279580:five_prime_UTR
GTTGAGCATAATCTACATCC+AGG 0.571211 8_3:+16660812 Msa1279580:five_prime_UTR
GCACCAATGCCACCGATGCA+AGG 0.578391 8_3:-16660929 None:intergenic
CATCATTTGAATTAGTGTCA+CGG 0.579541 8_3:-16661525 None:intergenic
CTATGAAATTCATGATTGCA+AGG 0.579951 8_3:-16662325 None:intergenic
AAGAAGAAGAATACGGTCAC+AGG 0.583067 8_3:+16661390 Msa1279580:CDS
TGCCTTGTAGAGTATAAGGA+TGG 0.589618 8_3:+16662283 Msa1279580:CDS
ACAGGGTATGCCCACTATGT+CGG 0.590225 8_3:+16663622 Msa1279580:intron
TAACCACTAAAGTTCCGAGT+TGG 0.590864 8_3:-16663672 None:intergenic
CTTTAGAACTACTTTCCTAG+TGG 0.602806 8_3:-16659714 None:intergenic
TTTCTGACTCACGTCCAACT+CGG 0.606833 8_3:+16663658 Msa1279580:CDS
TATAATGAAGCAAAACTGCA+TGG 0.609091 8_3:-16659575 None:intergenic
ATCAGGATCTAATGGAGCAT+AGG 0.609326 8_3:+16661350 Msa1279580:CDS
CTGAGACTAGACATTTAGAT+CGG 0.612665 8_3:+16661011 Msa1279580:five_prime_UTR
CAGATAATGTTGATCGACGA+AGG 0.627645 8_3:-16661114 None:intergenic
AGTTAGACATACTAGATAGA+GGG 0.630416 8_3:-16661270 None:intergenic
TGAAATTCACCAGCAATCCG+TGG 0.631199 8_3:+16661699 Msa1279580:CDS
CCTCACAATTGCGAGAAGGT+AGG 0.637022 8_3:+16661326 Msa1279580:CDS
AGGGTATGCCCACTATGTCG+GGG 0.645233 8_3:+16663624 Msa1279580:intron
GATCCAATAGAAGATACAGA+AGG 0.646146 8_3:-16661736 None:intergenic
CTTGTAGAAGATACAGGACA+AGG 0.647587 8_3:-16660767 None:intergenic
TACCCAACCTCTGAAGAGAA+CGG 0.647856 8_3:-16661414 None:intergenic
CAATCTATCTGACTCAGATG+AGG 0.650505 8_3:+16660566 Msa1279580:five_prime_UTR
GAGACCTCACAATTGCGAGA+AGG 0.664773 8_3:+16661322 Msa1279580:CDS
ACTAATTCAAATGATGACAC+TGG 0.666491 8_3:+16661532 Msa1279580:CDS
CCTACCTTCTCGCAATTGTG+AGG 0.671964 8_3:-16661326 None:intergenic
GCAAGGAAAACCTAATCCTG+AGG 0.674456 8_3:-16660912 None:intergenic
GGGTATGCCCACTATGTCGG+GGG 0.682605 8_3:+16663625 Msa1279580:intron
AATGGGTGAAAGAAAATGAG+AGG 0.694538 8_3:-16659501 None:intergenic
TTAACATAAATGAAACAGCA+CGG 0.696321 8_3:+16660852 Msa1279580:five_prime_UTR
AGGATGGGAAGATAAAACCA+CGG 0.736130 8_3:-16661716 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATAACATTATGAAAATTA+AGG - chr8_3:16659817-16659836 None:intergenic 15.0%
!!! CTTTTGTACTTATTTTAATT+AGG + chr8_3:16661669-16661688 Msa1279580:intron 15.0%
!! AATTCAATACAATAGTAAAA+TGG - chr8_3:16662485-16662504 None:intergenic 15.0%
!! AGTTAAAATTGCTTATAATT+TGG + chr8_3:16662672-16662691 Msa1279580:intron 15.0%
!! ACAGAAAATAAGTATTTAAT+TGG + chr8_3:16662754-16662773 Msa1279580:intron 15.0%
!! TACTAAAAACACTATAATAA+TGG + chr8_3:16662826-16662845 Msa1279580:intron 15.0%
!!! TTGAATTTAATTTTGAAAGA+GGG - chr8_3:16663302-16663321 None:intergenic 15.0%
!!! TGTATTTTCATTATTGTAAA+TGG + chr8_3:16663771-16663790 Msa1279580:three_prime_UTR 15.0%
!!! GTTTTGTTTTTTAAGGTATT+TGG + chr8_3:16659648-16659667 Msa1279580:five_prime_UTR 20.0%
!!! ATTTGATAACTAAAAAGAGT+TGG + chr8_3:16660180-16660199 Msa1279580:intron 20.0%
!! AGCATATAATTTACTATTTC+AGG - chr8_3:16660256-16660275 None:intergenic 20.0%
!! GAAATAGTAAATTATATGCT+TGG + chr8_3:16660256-16660275 Msa1279580:intron 20.0%
!!! CTTTATTTCTTATCAAATAC+TGG + chr8_3:16660300-16660319 Msa1279580:intron 20.0%
!! AAGATACTCCTATTAATATA+AGG + chr8_3:16660882-16660901 Msa1279580:five_prime_UTR 20.0%
!!! ATAGTTTTGATTACTAAACA+TGG - chr8_3:16661296-16661315 None:intergenic 20.0%
!!! TACTTATTTTAATTAGGTTC+TGG + chr8_3:16661675-16661694 Msa1279580:intron 20.0%
!!! AATATTTTGATAAAAGCTAG+TGG - chr8_3:16662032-16662051 None:intergenic 20.0%
!!! AAACTTTTCAACTTTCAAAA+AGG - chr8_3:16662055-16662074 None:intergenic 20.0%
!!! AAAGTTGAAAAGTTTTATCA+TGG + chr8_3:16662060-16662079 Msa1279580:intron 20.0%
!! CTAAAGATCAGAAAAATAAA+AGG - chr8_3:16662174-16662193 None:intergenic 20.0%
!!! ATTTGAAACTTTCATTTAAC+AGG - chr8_3:16662429-16662448 None:intergenic 20.0%
!! TTGATCATTGTCATATATTA+AGG - chr8_3:16662884-16662903 None:intergenic 20.0%
!!! CTTGAATTTAATTTTGAAAG+AGG - chr8_3:16663303-16663322 None:intergenic 20.0%
!! TGAAATAGTTTGGTTATAAA+TGG - chr8_3:16663356-16663375 None:intergenic 20.0%
!!! TGAAGTTTTATGGTTGAAAT+GGG - chr8_3:16659521-16659540 None:intergenic 25.0%
!!! ATGAAGTTTTATGGTTGAAA+TGG - chr8_3:16659522-16659541 None:intergenic 25.0%
!! TTGGCTAAAATGAAGTTTTA+TGG - chr8_3:16659531-16659550 None:intergenic 25.0%
!!! TTTTTTAGATTCTGGAAGAT+GGG - chr8_3:16659608-16659627 None:intergenic 25.0%
!!! AAAGACAGCATTTTTATTTC+TGG + chr8_3:16659625-16659644 Msa1279580:five_prime_UTR 25.0%
!!! AAGACAGCATTTTTATTTCT+GGG + chr8_3:16659626-16659645 Msa1279580:five_prime_UTR 25.0%
!!! TTTCTGGGTTTTGTTTTTTA+AGG + chr8_3:16659641-16659660 Msa1279580:five_prime_UTR 25.0%
! AAGTATTAAAATACACCTTG+AGG + chr8_3:16660051-16660070 Msa1279580:intron 25.0%
! AATACTCCTAAAAGATAAGT+AGG + chr8_3:16660086-16660105 Msa1279580:intron 25.0%
!! CTTAAACCTACTTATCTTTT+AGG - chr8_3:16660095-16660114 None:intergenic 25.0%
!!! ACACTCACTTATTTTTTAGA+AGG + chr8_3:16660146-16660165 Msa1279580:intron 25.0%
! TACTTTACTACTATCTCTAA+GGG - chr8_3:16660393-16660412 None:intergenic 25.0%
! TTACTTTACTACTATCTCTA+AGG - chr8_3:16660394-16660413 None:intergenic 25.0%
!!! TAACGACAATTTTGTTTGAT+TGG + chr8_3:16660452-16660471 Msa1279580:intron 25.0%
!!! AACGACAATTTTGTTTGATT+GGG + chr8_3:16660453-16660472 Msa1279580:intron 25.0%
! TGTGATCAGAATAAAGTAAA+TGG + chr8_3:16660516-16660535 Msa1279580:intron 25.0%
!! TGAAATCAAAGTCTTTTAGA+AGG + chr8_3:16660589-16660608 Msa1279580:five_prime_UTR 25.0%
! TTAACATAAATGAAACAGCA+CGG + chr8_3:16660852-16660871 Msa1279580:five_prime_UTR 25.0%
! GCATTTGACCTTATATTAAT+AGG - chr8_3:16660893-16660912 None:intergenic 25.0%
!! ATTTTCTCAGAGAATTCAAA+CGG + chr8_3:16660976-16660995 Msa1279580:five_prime_UTR 25.0%
! ACGATATTCAGAATAATCTA+AGG + chr8_3:16661179-16661198 Msa1279580:five_prime_UTR 25.0%
! TAATAAAGCTACCTCAAATA+AGG - chr8_3:16661599-16661618 None:intergenic 25.0%
! TCTTATCAGCTAAAATACAA+TGG + chr8_3:16661906-16661925 Msa1279580:intron 25.0%
!! CAATGCAATTGATAACAATA+GGG - chr8_3:16662092-16662111 None:intergenic 25.0%
!! ACAATGCAATTGATAACAAT+AGG - chr8_3:16662093-16662112 None:intergenic 25.0%
! ATGTACACTGATGAATAAAT+AGG - chr8_3:16662138-16662157 None:intergenic 25.0%
!!! TTATTTTTCTGATCTTTAGC+TGG + chr8_3:16662175-16662194 Msa1279580:intron 25.0%
! AGAAATTATAAGGTTAGCAT+TGG - chr8_3:16662250-16662269 None:intergenic 25.0%
! ATAGCATCTGAGAAATTATA+AGG - chr8_3:16662260-16662279 None:intergenic 25.0%
! AAAATGGCATGATGATTAAA+TGG - chr8_3:16662469-16662488 None:intergenic 25.0%
! AACTTAATCAAATTGCTGTA+GGG - chr8_3:16662642-16662661 None:intergenic 25.0%
! TAACTTAATCAAATTGCTGT+AGG - chr8_3:16662643-16662662 None:intergenic 25.0%
! TACAGCAATTTGATTAAGTT+AGG + chr8_3:16662642-16662661 Msa1279580:intron 25.0%
! CGAATATAAACAAATCATAG+TGG - chr8_3:16662699-16662718 None:intergenic 25.0%
! TGGAACTTGGAATATTTAAT+TGG + chr8_3:16662727-16662746 Msa1279580:intron 25.0%
! ATATGTATGCTATAAATCTC+TGG - chr8_3:16663077-16663096 None:intergenic 25.0%
!! AGCATACATATTTTCAATCA+TGG + chr8_3:16663086-16663105 Msa1279580:intron 25.0%
!! GCATACATATTTTCAATCAT+GGG + chr8_3:16663087-16663106 Msa1279580:intron 25.0%
! ATGTCTCGTCTAATAATATT+GGG - chr8_3:16663409-16663428 None:intergenic 25.0%
! AATGTCTCGTCTAATAATAT+TGG - chr8_3:16663410-16663429 None:intergenic 25.0%
!! TGAAACACTTGATTTTTATG+TGG + chr8_3:16663717-16663736 Msa1279580:three_prime_UTR 25.0%
!! GAAACACTTGATTTTTATGT+GGG + chr8_3:16663718-16663737 Msa1279580:three_prime_UTR 25.0%
!! AAACACTTGATTTTTATGTG+GGG + chr8_3:16663719-16663738 Msa1279580:three_prime_UTR 25.0%
! ATAGAAAATGATTGAACTTC+TGG - chr8_3:16663751-16663770 None:intergenic 25.0%
! TAAAAGGTCGCATTTTTATG+TGG - chr8_3:16659474-16659493 None:intergenic 30.0%
AATGAGAGGATGAAAGTAAA+AGG - chr8_3:16659490-16659509 None:intergenic 30.0%
! AACAATGTGTTGCATTGTTT+TGG - chr8_3:16659550-16659569 None:intergenic 30.0%
TATAATGAAGCAAAACTGCA+TGG - chr8_3:16659578-16659597 None:intergenic 30.0%
!!! CTTTTTTAGATTCTGGAAGA+TGG - chr8_3:16659609-16659628 None:intergenic 30.0%
!!! ATGCTGTCTTTTTTAGATTC+TGG - chr8_3:16659616-16659635 None:intergenic 30.0%
! TTTGGAAGTTTTTCTTGTTG+TGG + chr8_3:16659666-16659685 Msa1279580:five_prime_UTR 30.0%
!! TTGGAAGTTTTTCTTGTTGT+GGG + chr8_3:16659667-16659686 Msa1279580:five_prime_UTR 30.0%
!!! AGGATTTTGATGTTACTTTC+TGG + chr8_3:16659929-16659948 Msa1279580:intron 30.0%
! TTTAAGTTAGCAGCTTCTAT+AGG + chr8_3:16660109-16660128 Msa1279580:intron 30.0%
ACTTTACTACTATCTCTAAG+GGG - chr8_3:16660392-16660411 None:intergenic 30.0%
TCATATTCAAATGGCACTAA+TGG - chr8_3:16660417-16660436 None:intergenic 30.0%
ATGTTAATCAAACTGCTACA+AGG - chr8_3:16660839-16660858 None:intergenic 30.0%
TTTAGTCGAACTTTAAGTGT+TGG + chr8_3:16661073-16661092 Msa1279580:five_prime_UTR 30.0%
! GAATAATCTAAGGCAAACAT+TGG + chr8_3:16661189-16661208 Msa1279580:five_prime_UTR 30.0%
AGTTAGACATACTAGATAGA+GGG - chr8_3:16661273-16661292 None:intergenic 30.0%
TTGAACGAAGAAGAAGAATA+CGG + chr8_3:16661383-16661402 Msa1279580:CDS 30.0%
CATCATTTGAATTAGTGTCA+CGG - chr8_3:16661528-16661547 None:intergenic 30.0%
ACTAATTCAAATGATGACAC+TGG + chr8_3:16661532-16661551 Msa1279580:CDS 30.0%
AATAGAAGATACAGAAGGAT+GGG - chr8_3:16661734-16661753 None:intergenic 30.0%
AACTTCTCATATAACTTGAC+AGG - chr8_3:16661796-16661815 None:intergenic 30.0%
TATATGCCTTGTAGAGTATA+AGG + chr8_3:16662279-16662298 Msa1279580:CDS 30.0%
CTATGAAATTCATGATTGCA+AGG - chr8_3:16662328-16662347 None:intergenic 30.0%
ATAGAACATGCATAGACAAA+TGG + chr8_3:16662344-16662363 Msa1279580:CDS 30.0%
TAACAGGATAGTAAACAAGA+AGG - chr8_3:16662413-16662432 None:intergenic 30.0%
TTGAATTAAGCATATTTCGC+TGG + chr8_3:16662498-16662517 Msa1279580:intron 30.0%
AGCAATTTGATTAAGTTAGG+TGG + chr8_3:16662645-16662664 Msa1279580:intron 30.0%
GCAATTTGATTAAGTTAGGT+GGG + chr8_3:16662646-16662665 Msa1279580:intron 30.0%
CAATTTGATTAAGTTAGGTG+GGG + chr8_3:16662647-16662666 Msa1279580:intron 30.0%
! TGTTTATATTCGAGTCTTGT+TGG + chr8_3:16662707-16662726 Msa1279580:intron 30.0%
TAGTACAAATAATGCAGAAC+TGG - chr8_3:16662811-16662830 None:intergenic 30.0%
ATATATTAAGGTGCATGACA+TGG - chr8_3:16662872-16662891 None:intergenic 30.0%
! TCTTTTGTATTGGAAGGAAA+TGG - chr8_3:16663017-16663036 None:intergenic 30.0%
!! ATGTTTGAGGTCTTTTGTAT+TGG - chr8_3:16663027-16663046 None:intergenic 30.0%
AGGTAATATGGTTATGTTTG+AGG - chr8_3:16663040-16663059 None:intergenic 30.0%
TTTCATCTCGTTTGAATATC+TGG + chr8_3:16663211-16663230 Msa1279580:intron 30.0%
AAGAATCCCAATATCATTAG+AGG - chr8_3:16663470-16663489 None:intergenic 30.0%
! AAAACGCGACATTCTTTTTA+AGG - chr8_3:16663495-16663514 None:intergenic 30.0%
TAACCTCTTCAATTATACAC+AGG + chr8_3:16663604-16663623 Msa1279580:intron 30.0%
AACCTCTTCAATTATACACA+GGG + chr8_3:16663605-16663624 Msa1279580:intron 30.0%
! AACACTTGATTTTTATGTGG+GGG + chr8_3:16663720-16663739 Msa1279580:three_prime_UTR 30.0%
AATGGGTGAAAGAAAATGAG+AGG - chr8_3:16659504-16659523 None:intergenic 35.0%
!! TTTTTCTTGTTGTGGGTCAT+GGG + chr8_3:16659674-16659693 Msa1279580:five_prime_UTR 35.0%
!! CTTTAGAACTACTTTCCTAG+TGG - chr8_3:16659717-16659736 None:intergenic 35.0%
!! CACTAGGAAAGTAGTTCTAA+AGG + chr8_3:16659715-16659734 Msa1279580:five_prime_UTR 35.0%
!! AGTAGTTCTAAAGGACTGAA+AGG + chr8_3:16659724-16659743 Msa1279580:five_prime_UTR 35.0%
!! GTAGTTCTAAAGGACTGAAA+GGG + chr8_3:16659725-16659744 Msa1279580:five_prime_UTR 35.0%
GGGTTTCATTCTTATTGTCT+TGG + chr8_3:16659745-16659764 Msa1279580:five_prime_UTR 35.0%
TATTGTCTTGGAACATGTTC+TGG + chr8_3:16659757-16659776 Msa1279580:five_prime_UTR 35.0%
! ATCTCAAGACAGTGATAATG+AGG + chr8_3:16659780-16659799 Msa1279580:five_prime_UTR 35.0%
GTAACATCAAAATCCTTGAC+AGG - chr8_3:16659925-16659944 None:intergenic 35.0%
TTATCAAATACTGGTCCATG+AGG + chr8_3:16660309-16660328 Msa1279580:intron 35.0%
GACAGTCAGTCATATTCAAA+TGG - chr8_3:16660426-16660445 None:intergenic 35.0%
CCACATAATGAGTCACAATT+AGG - chr8_3:16660494-16660513 None:intergenic 35.0%
CCTAATTGTGACTCATTATG+TGG + chr8_3:16660491-16660510 Msa1279580:intron 35.0%
! GATGTTACATGTGCTGATAA+TGG + chr8_3:16660543-16660562 Msa1279580:five_prime_UTR 35.0%
!! GTCTTTTAGAAGGTTAAAGC+TGG + chr8_3:16660599-16660618 Msa1279580:intron 35.0%
TCCAGACTTAGCATATTTCA+CGG + chr8_3:16660728-16660747 Msa1279580:five_prime_UTR 35.0%
AATATAAGGTCAAATGCCTC+AGG + chr8_3:16660896-16660915 Msa1279580:five_prime_UTR 35.0%
CTGAGACTAGACATTTAGAT+CGG + chr8_3:16661011-16661030 Msa1279580:five_prime_UTR 35.0%
! TAATCTAAGGCAAACATTGG+AGG + chr8_3:16661192-16661211 Msa1279580:five_prime_UTR 35.0%
CTATTAGCACTATGATCTGA+TGG - chr8_3:16661235-16661254 None:intergenic 35.0%
GAGTTAGACATACTAGATAG+AGG - chr8_3:16661274-16661293 None:intergenic 35.0%
TCTTCTTCGTTCAAGGAAAT+TGG - chr8_3:16661377-16661396 None:intergenic 35.0%
GTATTCTTCTTCTTCGTTCA+AGG - chr8_3:16661384-16661403 None:intergenic 35.0%
!! GTGCAGATTGATTTTCATAC+CGG - chr8_3:16661441-16661460 None:intergenic 35.0%
CAATAGAAGATACAGAAGGA+TGG - chr8_3:16661735-16661754 None:intergenic 35.0%
CATCCTTCTGTATCTTCTAT+TGG + chr8_3:16661733-16661752 Msa1279580:CDS 35.0%
GATCCAATAGAAGATACAGA+AGG - chr8_3:16661739-16661758 None:intergenic 35.0%
AATGACTCCACAACATTGAT+AGG - chr8_3:16661772-16661791 None:intergenic 35.0%
! TATTTGAGTTTACCGCTGTT+TGG + chr8_3:16661848-16661867 Msa1279580:intron 35.0%
AGTTTAAATCGTCCAAACAG+CGG - chr8_3:16661863-16661882 None:intergenic 35.0%
TCAGCTAAAATACAATGGAG+TGG + chr8_3:16661911-16661930 Msa1279580:intron 35.0%
TCAGTGTACATGTATGTTTG+CGG + chr8_3:16662147-16662166 Msa1279580:intron 35.0%
ATGCATAGACAAATGGTTGA+AGG + chr8_3:16662351-16662370 Msa1279580:CDS 35.0%
TAGTAAACAAGAAGGCAATC+TGG - chr8_3:16662405-16662424 None:intergenic 35.0%
TCCATAATAGTGCAAACCAA+CGG - chr8_3:16662951-16662970 None:intergenic 35.0%
! TTGAGGTCTTTTGTATTGGA+AGG - chr8_3:16663023-16663042 None:intergenic 35.0%
TATGTTGCCGAGTTAGAAAA+GGG - chr8_3:16663118-16663137 None:intergenic 35.0%
ATATGTTGCCGAGTTAGAAA+AGG - chr8_3:16663119-16663138 None:intergenic 35.0%
! GTTTTCTCATTTAGTAGCAC+AGG + chr8_3:16663166-16663185 Msa1279580:intron 35.0%
GCAACGAAACATTGAATTCA+AGG - chr8_3:16663246-16663265 None:intergenic 35.0%
GCTTACGTGTTGAAATAGTT+TGG - chr8_3:16663366-16663385 None:intergenic 35.0%
TTGTCCTCCTCTAATGATAT+TGG + chr8_3:16663460-16663479 Msa1279580:intron 35.0%
TGTCCTCCTCTAATGATATT+GGG + chr8_3:16663461-16663480 Msa1279580:intron 35.0%
AATCCCAATATCATTAGAGG+AGG - chr8_3:16663467-16663486 None:intergenic 35.0%
GATACATACAAATACTCTCG+AGG - chr8_3:16663584-16663603 None:intergenic 35.0%
TACCCTGTGTATAATTGAAG+AGG - chr8_3:16663610-16663629 None:intergenic 35.0%
! ACACTTGATTTTTATGTGGG+GGG + chr8_3:16663721-16663740 Msa1279580:three_prime_UTR 35.0%
! TTAGATTCTGGAAGATGGGT+CGG - chr8_3:16659604-16659623 None:intergenic 40.0%
!! GTTTTTCTTGTTGTGGGTCA+TGG + chr8_3:16659673-16659692 Msa1279580:five_prime_UTR 40.0%
CTAATAGTAGCAAAGCCACT+AGG + chr8_3:16659699-16659718 Msa1279580:five_prime_UTR 40.0%
GTGATTATACCAACCTGTCA+AGG + chr8_3:16659909-16659928 Msa1279580:intron 40.0%
CATCAAAATCCTTGACAGGT+TGG - chr8_3:16659921-16659940 None:intergenic 40.0%
ATTTAGCAACATGCACCTCA+AGG - chr8_3:16660069-16660088 None:intergenic 40.0%
CAATCTATCTGACTCAGATG+AGG + chr8_3:16660566-16660585 Msa1279580:five_prime_UTR 40.0%
! CTACTAGTCGATTCCTTTCT+CGG + chr8_3:16660678-16660697 Msa1279580:intron 40.0%
!! AGTCTGGAGCTTTTATTACC+AGG - chr8_3:16660716-16660735 None:intergenic 40.0%
ACCGTGAAATATGCTAAGTC+TGG - chr8_3:16660732-16660751 None:intergenic 40.0%
CTTGTAGAAGATACAGGACA+AGG - chr8_3:16660770-16660789 None:intergenic 40.0%
! GAGAGTCTTGTAGAAGATAC+AGG - chr8_3:16660776-16660795 None:intergenic 40.0%
GTTGAGCATAATCTACATCC+AGG + chr8_3:16660812-16660831 Msa1279580:five_prime_UTR 40.0%
! GGATTAGGTTTTCCTTGCAT+CGG + chr8_3:16660917-16660936 Msa1279580:five_prime_UTR 40.0%
AGACATTTAGATCGGCGAAA+CGG + chr8_3:16661019-16661038 Msa1279580:five_prime_UTR 40.0%
CAGATAATGTTGATCGACGA+AGG - chr8_3:16661117-16661136 None:intergenic 40.0%
!! CATACTAGATAGAGGGTATC+TGG - chr8_3:16661266-16661285 None:intergenic 40.0%
AGGTAGGTATCAGGATCTAA+TGG + chr8_3:16661342-16661361 Msa1279580:CDS 40.0%
ATCAGGATCTAATGGAGCAT+AGG + chr8_3:16661350-16661369 Msa1279580:CDS 40.0%
AAGAAGAAGAATACGGTCAC+AGG + chr8_3:16661390-16661409 Msa1279580:CDS 40.0%
GAGAGATCATGTATCTTGTC+TGG + chr8_3:16661463-16661482 Msa1279580:CDS 40.0%
!! ACTTGCAGAAGCCTTATTTG+AGG + chr8_3:16661585-16661604 Msa1279580:CDS 40.0%
! AAGATAAAACCACGGATTGC+TGG - chr8_3:16661711-16661730 None:intergenic 40.0%
AGGATGGGAAGATAAAACCA+CGG - chr8_3:16661719-16661738 None:intergenic 40.0%
GTAGCATCTTCTTGATGCTT+AGG - chr8_3:16661820-16661839 None:intergenic 40.0%
GCTGTTTGGACGATTTAAAC+TGG + chr8_3:16661862-16661881 Msa1279580:intron 40.0%
! TTCTGATCTTTAGCTGGCTT+AGG + chr8_3:16662181-16662200 Msa1279580:intron 40.0%
TGCCTTGTAGAGTATAAGGA+TGG + chr8_3:16662283-16662302 Msa1279580:CDS 40.0%
CTCCATCCTTATACTCTACA+AGG - chr8_3:16662288-16662307 None:intergenic 40.0%
AATGGTTGAAGGAGATTCAC+AGG + chr8_3:16662362-16662381 Msa1279580:CDS 40.0%
TATTCAAGCGCAGATAGAGT+AGG - chr8_3:16662533-16662552 None:intergenic 40.0%
!! ATTCGAGTCTTGTTGGAACT+TGG + chr8_3:16662714-16662733 Msa1279580:intron 40.0%
TTAAGGTGCATGACATGGTT+TGG - chr8_3:16662867-16662886 None:intergenic 40.0%
ACCAACGGCATTTGGTATTA+GGG - chr8_3:16662936-16662955 None:intergenic 40.0%
AACCAACGGCATTTGGTATT+AGG - chr8_3:16662937-16662956 None:intergenic 40.0%
CCTCATACGTACAGGTAATA+TGG - chr8_3:16663052-16663071 None:intergenic 40.0%
CCATATTACCTGTACGTATG+AGG + chr8_3:16663049-16663068 Msa1279580:intron 40.0%
ATGTTGCCGAGTTAGAAAAG+GGG - chr8_3:16663117-16663136 None:intergenic 40.0%
ACAATGTGTGCTCAATGTGA+CGG - chr8_3:16663438-16663457 None:intergenic 40.0%
TAACCACTAAAGTTCCGAGT+TGG - chr8_3:16663675-16663694 None:intergenic 40.0%
CGAGAAAGGAATCGACTAGT+AGG - chr8_3:16660680-16660699 None:intergenic 45.0%
! AGTCGATTCCTTTCTCGGTT+TGG + chr8_3:16660683-16660702 Msa1279580:intron 45.0%
ATCAAACTGCTACAAGGTCC+TGG - chr8_3:16660833-16660852 None:intergenic 45.0%
AGGTCAAATGCCTCAGGATT+AGG + chr8_3:16660902-16660921 Msa1279580:five_prime_UTR 45.0%
GCAAGGAAAACCTAATCCTG+AGG - chr8_3:16660915-16660934 None:intergenic 45.0%
! TTAGGTTTTCCTTGCATCGG+TGG + chr8_3:16660920-16660939 Msa1279580:five_prime_UTR 45.0%
CATTGGTGCAAGAGATGAGT+TGG + chr8_3:16660943-16660962 Msa1279580:five_prime_UTR 45.0%
CTCTTGTTGCAGAGGGAAAA+AGG - chr8_3:16661146-16661165 None:intergenic 45.0%
GTTCTCTCTCTTGTTGCAGA+GGG - chr8_3:16661153-16661172 None:intergenic 45.0%
AGTTCTCTCTCTTGTTGCAG+AGG - chr8_3:16661154-16661173 None:intergenic 45.0%
ATTGCGAGAAGGTAGGTATC+AGG + chr8_3:16661333-16661352 Msa1279580:CDS 45.0%
! TACCCAACCTCTGAAGAGAA+CGG - chr8_3:16661417-16661436 None:intergenic 45.0%
TGAAATTCACCAGCAATCCG+TGG + chr8_3:16661699-16661718 Msa1279580:CDS 45.0%
TCCTGCACCTATCAATGTTG+TGG + chr8_3:16661762-16661781 Msa1279580:CDS 45.0%
TCCACAACATTGATAGGTGC+AGG - chr8_3:16661766-16661785 None:intergenic 45.0%
GCATATTTCGCTGGACCTTA+TGG + chr8_3:16662507-16662526 Msa1279580:intron 45.0%
TCCCTAATACCAAATGCCGT+TGG + chr8_3:16662932-16662951 Msa1279580:intron 45.0%
TAGTGCAAACCAACGGCATT+TGG - chr8_3:16662944-16662963 None:intergenic 45.0%
!! GCCGTTGGTTTGCACTATTA+TGG + chr8_3:16662947-16662966 Msa1279580:intron 45.0%
! GGATACCCCCTTTTCTAACT+CGG + chr8_3:16663108-16663127 Msa1279580:intron 45.0%
TGTTGCCGAGTTAGAAAAGG+GGG - chr8_3:16663116-16663135 None:intergenic 45.0%
TTTCTGACTCACGTCCAACT+CGG + chr8_3:16663658-16663677 Msa1279580:CDS 45.0%
! TCCATGAGGTGTCAACTCAG+CGG + chr8_3:16660323-16660342 Msa1279580:intron 50.0%
! TTTCCTTGCATCGGTGGCAT+TGG + chr8_3:16660926-16660945 Msa1279580:five_prime_UTR 50.0%
GAGACCTCACAATTGCGAGA+AGG + chr8_3:16661322-16661341 Msa1279580:CDS 50.0%
CCTACCTTCTCGCAATTGTG+AGG - chr8_3:16661329-16661348 None:intergenic 50.0%
CCTCACAATTGCGAGAAGGT+AGG + chr8_3:16661326-16661345 Msa1279580:CDS 50.0%
GTCCGTTCTCTTCAGAGGTT+GGG + chr8_3:16661412-16661431 Msa1279580:CDS 50.0%
CGCAGATAGAGTAGGCCATA+AGG - chr8_3:16662525-16662544 None:intergenic 50.0%
! CTCTGGTTCCTCATACGTAC+AGG - chr8_3:16663060-16663079 None:intergenic 50.0%
ACAGGGTATGCCCACTATGT+CGG + chr8_3:16663622-16663641 Msa1279580:intron 50.0%
CGTCCAACTCGGAACTTTAG+TGG + chr8_3:16663669-16663688 Msa1279580:CDS 50.0%
! ACCGCTGAGTTGACACCTCA+TGG - chr8_3:16660327-16660346 None:intergenic 55.0%
GAGTGACGCCAAACCGAGAA+AGG - chr8_3:16660694-16660713 None:intergenic 55.0%
CACAGGTCCGTTCTCTTCAG+AGG + chr8_3:16661407-16661426 Msa1279580:CDS 55.0%
GGTCCGTTCTCTTCAGAGGT+TGG + chr8_3:16661411-16661430 Msa1279580:CDS 55.0%
CTCTTCAGAGGTTGGGTAGC+CGG + chr8_3:16661419-16661438 Msa1279580:CDS 55.0%
CAGGGTATGCCCACTATGTC+GGG + chr8_3:16663623-16663642 Msa1279580:intron 55.0%
AGGGTATGCCCACTATGTCG+GGG + chr8_3:16663624-16663643 Msa1279580:intron 55.0%
AGACGTTCCCCCGACATAGT+GGG - chr8_3:16663635-16663654 None:intergenic 55.0%
!! TCTCGGTTTGGCGTCACTCC+TGG + chr8_3:16660695-16660714 Msa1279580:five_prime_UTR 60.0%
GCACCAATGCCACCGATGCA+AGG - chr8_3:16660932-16660951 None:intergenic 60.0%
GGGTATGCCCACTATGTCGG+GGG + chr8_3:16663625-16663644 Msa1279580:intron 60.0%
CAGACGTTCCCCCGACATAG+TGG - chr8_3:16663636-16663655 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 16659405 16663799 16659405 ID=Msa1279580;Name=Msa1279580
chr8_3 mRNA 16659405 16663799 16659405 ID=Msa1279580-mRNA-1;Parent=Msa1279580;Name=Msa1279580-mRNA-1;_AED=0.04;_eAED=0.04;_QI=1090|0.6|0.5|1|0.8|0.83|6|104|218
chr8_3 exon 16659405 16659810 16659405 ID=Msa1279580-mRNA-1:exon:6475;Parent=Msa1279580-mRNA-1
chr8_3 exon 16660525 16660610 16660525 ID=Msa1279580-mRNA-1:exon:6476;Parent=Msa1279580-mRNA-1
chr8_3 exon 16660685 16661606 16660685 ID=Msa1279580-mRNA-1:exon:6477;Parent=Msa1279580-mRNA-1
chr8_3 exon 16661691 16661842 16661691 ID=Msa1279580-mRNA-1:exon:6478;Parent=Msa1279580-mRNA-1
chr8_3 exon 16662273 16662383 16662273 ID=Msa1279580-mRNA-1:exon:6479;Parent=Msa1279580-mRNA-1
chr8_3 exon 16663626 16663799 16663626 ID=Msa1279580-mRNA-1:exon:6480;Parent=Msa1279580-mRNA-1
chr8_3 five_prime_UTR 16659405 16659810 16659405 ID=Msa1279580-mRNA-1:five_prime_utr;Parent=Msa1279580-mRNA-1
chr8_3 five_prime_UTR 16660525 16660610 16660525 ID=Msa1279580-mRNA-1:five_prime_utr;Parent=Msa1279580-mRNA-1
chr8_3 five_prime_UTR 16660685 16661282 16660685 ID=Msa1279580-mRNA-1:five_prime_utr;Parent=Msa1279580-mRNA-1
chr8_3 CDS 16661283 16661606 16661283 ID=Msa1279580-mRNA-1:cds;Parent=Msa1279580-mRNA-1
chr8_3 CDS 16661691 16661842 16661691 ID=Msa1279580-mRNA-1:cds;Parent=Msa1279580-mRNA-1
chr8_3 CDS 16662273 16662383 16662273 ID=Msa1279580-mRNA-1:cds;Parent=Msa1279580-mRNA-1
chr8_3 CDS 16663626 16663695 16663626 ID=Msa1279580-mRNA-1:cds;Parent=Msa1279580-mRNA-1
chr8_3 three_prime_UTR 16663696 16663799 16663696 ID=Msa1279580-mRNA-1:three_prime_utr;Parent=Msa1279580-mRNA-1
Gene Sequence

>Msa1279580

ATGTCTAACTCCATGTTTAGTAATCAAAACTATCGTGTTGAGACCTCACAATTGCGAGAAGGTAGGTATCAGGATCTAATGGAGCATAGGTCCAATTTCCTTGAACGAAGAAGAAGAATACGGTCACAGGTCCGTTCTCTTCAGAGGTTGGGTAGCCGGTATGAAAATCAATCTGCACATGAGAGATCATGTATCTTGTCTGGTCAACATAGAAGTGCTCGTTGTATGTGTCGATTCAGAAACCGTGACACTAATTCAAATGATGACACTGGTGCTAGAGCTAGCATATCAAGAATTGTTGTACTTGCAGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCCGTGGTTTTATCTTCCCATCCTTCTGTATCTTCTATTGGATCTGTTCCTGCACCTATCAATGTTGTGGAGTCATTGCCTGTCAAGTTATATGAGAAGTTGCCTAAGCATCAAGAAGATGCTACACAATGCTATATATGCCTTGTAGAGTATAAGGATGGAGACAGCGTGCGAGTTCTGCCTTGCAATCATGAATTTCATAGAACATGCATAGACAAATGGTTGAAGGAGATTCACAGGGTATGCCCACTATGTCGGGGGAACGTCTGCATTTCTGACTCACGTCCAACTCGGAACTTTAGTGGTTAG
Protein sequence

>Msa1279580

MSNSMFSNQNYRVETSQLREGRYQDLMEHRSNFLERRRRIRSQVRSLQRLGSRYENQSAHERSCILSGQHRSARCMCRFRNRDTNSNDDTGARASISRIVVLAEALFEVLDEIHQQSVVLSSHPSVSSIGSVPAPINVVESLPVKLYEKLPKHQEDATQCYICLVEYKDGDSVRVLPCNHEFHRTCIDKWLKEIHRVCPLCRGNVCISDSRPTRNFSG*