AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1279520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1279520 MtrunA17_Chr8g0369691 90.392 510 40 2 1 509 1 502 0.0 887
Msa1279520 MtrunA17_Chr5g0408871 61.738 541 162 10 10 507 22 560 0.0 573
Msa1279520 MtrunA17_Chr4g0065171 49.724 181 72 7 321 498 366 530 5.52e-37 143
Msa1279520 MtrunA17_Chr5g0405931 44.068 59 33 0 448 506 53 111 2.24e-14 70.1
Msa1279520 MtrunA17_Chr1g0203541 45.205 73 34 3 430 497 110 181 2.53e-14 72.0
Msa1279520 MtrunA17_Chr1g0171061 41.176 68 34 2 439 506 45 106 3.56e-14 69.7
Msa1279520 MtrunA17_Chr5g0425981 44.643 56 30 1 439 494 45 99 6.27e-13 66.2
Msa1279520 MtrunA17_Chr3g0121201 39.759 83 40 3 422 503 214 287 3.14e-12 68.2
Msa1279520 MtrunA17_Chr3g0104301 38.095 63 34 1 444 506 50 107 3.96e-12 63.9
Msa1279520 MtrunA17_Chr3g0104321 38.095 63 34 1 444 506 50 107 3.96e-12 63.9
Msa1279520 MtrunA17_Chr5g0427431 46.377 69 34 3 430 497 139 205 6.23e-12 67.8
Msa1279520 MtrunA17_Chr1g0177041 49.254 67 30 3 431 494 80 145 6.66e-12 63.9
Msa1279520 MtrunA17_Chr8g0382811 33.613 119 61 5 398 501 4 119 6.85e-12 63.5
Msa1279520 MtrunA17_Chr8g0381731 40.909 88 48 4 411 497 135 219 6.89e-12 66.2
Msa1279520 MtrunA17_Chr6g0451031 41.176 68 36 3 431 497 50 114 1.04e-11 62.4
Msa1279520 MtrunA17_Chr5g0427771 37.879 66 33 2 444 506 48 108 1.15e-11 62.4
Msa1279520 MtrunA17_Chr3g0104311 36.508 63 35 1 444 506 50 107 1.24e-11 62.4
Msa1279520 MtrunA17_Chr3g0128771 59.574 47 17 2 449 494 116 161 1.27e-11 63.5
Msa1279520 MtrunA17_Chr5g0427781 38.333 60 32 1 447 506 54 108 1.32e-11 62.4
Msa1279520 MtrunA17_Chr1g0148631 54.902 51 21 2 447 497 337 385 1.59e-11 66.2
Msa1279520 MtrunA17_Chr2g0297011 43.662 71 37 3 433 502 84 152 1.91e-11 62.4
Msa1279520 MtrunA17_Chr0c01g0489421 39.344 61 37 0 437 497 42 102 2.00e-11 61.6
Msa1279520 MtrunA17_Chr6g0470751 31.092 119 75 5 384 497 55 171 2.22e-11 65.1
Msa1279520 MtrunA17_Chr5g0417501 38.356 73 39 2 422 494 90 156 2.67e-11 63.5
Msa1279520 MtrunA17_Chr5g0416351 38.235 68 36 2 439 506 63 124 2.71e-11 62.0
Msa1279520 MtrunA17_Chr3g0124531 50.000 46 23 0 452 497 69 114 3.10e-11 61.6
Msa1279520 MtrunA17_Chr8g0350741 39.506 81 43 4 422 498 60 138 3.57e-11 62.0
Msa1279520 MtrunA17_Chr5g0416361 38.235 68 36 2 439 506 45 106 4.55e-11 60.8
Msa1279520 MtrunA17_Chr4g0057351 56.863 51 20 2 447 497 312 360 4.57e-11 64.7
Msa1279520 MtrunA17_Chr7g0246571 56.364 55 22 2 447 501 308 360 4.62e-11 64.7
Msa1279520 MtrunA17_Chr6g0486651 44.444 72 37 3 431 501 99 168 4.73e-11 64.7
Msa1279520 MtrunA17_Chr7g0276591 45.588 68 29 4 430 494 81 143 5.37e-11 63.5
Msa1279520 MtrunA17_Chr5g0446921 49.091 55 27 1 440 494 282 335 6.32e-11 63.9
Msa1279520 MtrunA17_Chr5g0411081 52.941 51 22 2 448 497 144 193 6.69e-11 63.9
Msa1279520 MtrunA17_Chr5g0397921 53.846 52 22 2 446 497 327 376 7.62e-11 63.9
Msa1279520 MtrunA17_Chr8g0383881 60.870 46 16 2 450 494 128 172 8.43e-11 62.0
Msa1279520 MtrunA17_Chr1g0161291 54.902 51 21 2 447 497 295 343 8.71e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1279520 AT5G45290.1 57.994 319 119 6 189 501 230 539 5.84e-108 332
Msa1279520 AT5G45290.2 57.812 320 119 7 189 501 230 540 3.41e-106 328
Msa1279520 AT3G05200.1 44.595 74 37 3 428 498 102 174 6.05e-13 70.9
Msa1279520 AT1G21960.1 50.000 70 34 1 425 494 131 199 6.26e-13 68.2
Msa1279520 AT1G35625.1 34.286 70 46 0 427 496 208 277 9.81e-13 69.7
Msa1279520 AT4G11680.1 62.745 51 17 2 447 497 334 382 2.46e-12 68.9
Msa1279520 AT5G05280.1 47.692 65 30 3 431 494 94 155 3.14e-12 65.5
Msa1279520 AT1G35630.1 34.286 70 46 0 427 496 208 277 4.90e-12 67.4
Msa1279520 AT5G01880.1 61.702 47 16 2 449 494 102 147 4.94e-12 64.7
Msa1279520 AT1G71980.1 36.923 65 41 0 430 494 210 274 6.22e-12 68.2
Msa1279520 AT5G52155.1 46.667 60 31 1 438 497 123 181 8.27e-12 64.3
Msa1279520 AT4G11680.2 61.702 47 17 1 451 497 366 411 8.87e-12 67.4
Msa1279520 AT3G19950.1 37.037 81 47 3 422 501 187 264 1.04e-11 66.6
Msa1279520 AT3G19950.2 37.037 81 47 3 422 501 245 322 1.06e-11 67.0
Msa1279520 AT3G19950.3 37.037 81 47 3 422 501 245 322 1.06e-11 67.0
Msa1279520 AT3G16720.1 42.857 70 36 3 429 497 98 164 1.11e-11 66.2
Msa1279520 AT2G20030.1 42.466 73 39 3 430 501 103 173 1.54e-11 66.6
Msa1279520 AT2G35000.1 35.632 87 48 4 431 510 112 197 1.75e-11 66.2
Msa1279520 AT1G12760.1 55.769 52 21 2 446 497 348 397 1.81e-11 66.6
Msa1279520 AT5G66160.1 39.706 68 40 1 430 497 211 277 1.88e-11 65.5
Msa1279520 AT1G23980.1 42.029 69 37 3 430 497 123 189 1.93e-11 66.2
Msa1279520 AT3G19910.1 37.838 74 45 1 429 502 265 337 1.95e-11 65.9
Msa1279520 AT5G05810.1 42.857 70 37 3 429 497 124 191 2.03e-11 66.2
Msa1279520 AT1G12760.2 55.769 52 21 2 446 497 277 326 2.04e-11 65.9
Msa1279520 AT3G10910.1 42.667 75 40 3 431 504 94 166 2.63e-11 63.2
Msa1279520 AT4G09560.1 33.824 68 45 0 427 494 209 276 2.82e-11 66.2
Msa1279520 AT5G66160.2 39.437 71 36 1 434 497 207 277 3.16e-11 64.7
Msa1279520 AT5G06490.1 43.056 72 33 3 430 494 101 171 3.35e-11 63.2
Msa1279520 AT4G38140.1 46.154 65 33 2 444 507 54 117 3.50e-11 61.6
Msa1279520 AT3G61180.1 54.902 51 21 2 447 497 319 367 3.51e-11 65.5
Msa1279520 AT3G61460.1 33.333 111 66 4 387 494 32 137 3.73e-11 62.4
Msa1279520 AT5G52140.1 48.000 50 25 1 448 497 230 278 6.03e-11 63.9
Msa1279520 AT1G53820.1 51.923 52 23 2 447 497 115 165 6.06e-11 63.9
Msa1279520 AT4G26400.2 44.595 74 31 3 422 494 218 282 6.28e-11 64.3
Msa1279520 AT4G26400.1 44.595 74 31 3 422 494 218 282 6.28e-11 64.3
Msa1279520 AT1G26800.1 28.346 127 80 4 371 494 36 154 7.59e-11 62.0
Msa1279520 AT2G01735.1 47.297 74 32 3 424 497 285 351 7.63e-11 64.3
Msa1279520 AT1G20823.1 44.776 67 35 2 429 494 88 153 8.32e-11 62.0
Msa1279520 AT4G17245.1 54.167 48 21 1 451 497 101 148 9.51e-11 60.8

Find 113 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATGCCAAAATTATATTT+TGG 0.117172 8_3:+16591093 None:intergenic
TCTTCTTCGTTCAAGGAAAT+TGG 0.152045 8_3:+16593639 None:intergenic
GTCTCCCCAAAATATAATTT+TGG 0.167309 8_3:-16591099 Msa1279520:three_prime_UTR
CATCCTTCTGTATCTTCTAT+TGG 0.170412 8_3:-16593280 Msa1279520:CDS
TATTGTCTTGGAACATGTTC+TGG 0.223726 8_3:-16595256 Msa1279520:CDS
TTGTTCTTTACAACTATTCT+AGG 0.240425 8_3:-16590963 Msa1279520:three_prime_UTR
GCATTTGACCTTATATTAAT+AGG 0.244877 8_3:+16594123 None:intergenic
CTACTAGTCGATTCCTTTCT+CGG 0.260477 8_3:-16594335 Msa1279520:CDS
ATAGAAAATGATTGAACTTC+TGG 0.276207 8_3:+16591264 None:intergenic
CTCTTGTTGCAGAGGGAAAA+AGG 0.281468 8_3:+16593870 None:intergenic
TAATAAAGCTACCTCAAATA+AGG 0.291964 8_3:+16593417 None:intergenic
AATGAGAGGATGAAAGTAAA+AGG 0.300382 8_3:+16595529 None:intergenic
AGGTCAAATGCCTCAGGATT+AGG 0.313045 8_3:-16594111 Msa1279520:CDS
TGTGATCAGAATAAAGTAAA+TGG 0.330122 8_3:-16594498 Msa1279520:intron
CATACTAGATAGAGGGTATC+TGG 0.338705 8_3:+16593750 None:intergenic
TATATGCCTTGTAGAGTATA+AGG 0.345652 8_3:-16592734 Msa1279520:CDS
GTATTCTTCTTCTTCGTTCA+AGG 0.354262 8_3:+16593632 None:intergenic
AACAATGTGTTGCATTGTTT+TGG 0.364662 8_3:+16595469 None:intergenic
CGTCCAACTCGGAACTTTAG+TGG 0.368904 8_3:-16591343 Msa1279520:CDS
TCCAGACTTAGCATATTTAC+CGG 0.373072 8_3:-16594285 Msa1279520:CDS
ACGATATTCAGAATAATCTA+AGG 0.387524 8_3:-16593834 Msa1279520:CDS
AGTCGATTCCTTTCTCGGTT+TGG 0.394328 8_3:-16594330 Msa1279520:CDS
AAGATAAAACCACGGATTGC+TGG 0.400437 8_3:+16593305 None:intergenic
TCTCGGTTTGGCGTCACTCC+TGG 0.406664 8_3:-16594318 Msa1279520:CDS
AAGATACTCCTATTAATATA+AGG 0.410567 8_3:-16594131 Msa1279520:CDS
CTCTTCAGAGGTTGGGTAGC+CGG 0.412332 8_3:-16593594 Msa1279520:CDS
GGGTTTCATTCTTATTGTCT+TGG 0.416085 8_3:-16595268 Msa1279520:CDS
GTCCGTTCTCTTCAGAGGTT+GGG 0.422816 8_3:-16593601 Msa1279520:CDS
TTTCATATTTATTCTGCAAT+CGG 0.425866 8_3:+16591208 None:intergenic
AAGCTAAGGAGGAGGTTAGT+GGG 0.429925 8_3:-16591162 Msa1279520:three_prime_UTR
AGGTAGGTATCAGGATCTAA+TGG 0.431610 8_3:-16593671 Msa1279520:CDS
AATGACTCCACAACATTGAT+AGG 0.435689 8_3:+16593244 None:intergenic
TTTCCTTGCATCGGTGGCAT+TGG 0.435884 8_3:-16594087 Msa1279520:CDS
AGCTAAGGAGGAGGTTAGTG+GGG 0.436164 8_3:-16591161 Msa1279520:three_prime_UTR
CAGGGTATGCCCACTATGTC+GGG 0.443572 8_3:-16591389 Msa1279520:CDS
AGACAGTGATAATGAGGAAC+AGG 0.446528 8_3:-16595227 Msa1279520:intron
ACCGGTAAATATGCTAAGTC+TGG 0.449805 8_3:+16594284 None:intergenic
ATTGCGAGAAGGTAGGTATC+AGG 0.452326 8_3:-16593680 Msa1279520:CDS
AAAGCTAAGGAGGAGGTTAG+TGG 0.459821 8_3:-16591163 Msa1279520:three_prime_UTR
ATCAAACTGCTACAAGGTCC+TGG 0.462429 8_3:+16594183 None:intergenic
GAGAGATCATGTATCTTGTC+TGG 0.471985 8_3:-16593550 Msa1279520:CDS
GGTCCGTTCTCTTCAGAGGT+TGG 0.473101 8_3:-16593602 Msa1279520:CDS
ATAGAACATGCATAGACAAA+TGG 0.475464 8_3:-16592669 Msa1279520:CDS
CGAGAAAGGAATCGACTAGT+AGG 0.486486 8_3:+16594336 None:intergenic
GAGAGTCTTGTAGAAGATAC+AGG 0.486657 8_3:+16594240 None:intergenic
TTTAGTCGAACTTTAAGTGT+TGG 0.497463 8_3:-16593940 Msa1279520:CDS
CTCCATCCTTATACTCTACA+AGG 0.499147 8_3:+16592728 None:intergenic
GAGTTAGACATACTAGATAG+AGG 0.503213 8_3:+16593742 None:intergenic
GAGTGACGCCAAACCGAGAA+AGG 0.511012 8_3:+16594322 None:intergenic
GAAAGAAAAGAAAGCTAAGG+AGG 0.511133 8_3:-16591173 Msa1279520:three_prime_UTR
ACTAGGAAGAGTAGTTCTAA+AGG 0.516747 8_3:-16595298 Msa1279520:CDS
AGTAGTTCTAAAGGACTGAA+AGG 0.517449 8_3:-16595289 Msa1279520:CDS
GTAGTTCTAAAGGACTGAAA+GGG 0.519615 8_3:-16595288 Msa1279520:CDS
TCCTGCACCTATCAATGTTG+TGG 0.520844 8_3:-16593251 Msa1279520:CDS
GGAGAAAGAAAAGAAAGCTA+AGG 0.521832 8_3:-16591176 Msa1279520:three_prime_UTR
GATGTTACATGTGCTGATAA+TGG 0.524096 8_3:-16594471 Msa1279520:CDS
CACAGGTCCGTTCTCTTCAG+AGG 0.525705 8_3:-16593606 Msa1279520:CDS
ACTTGCAGAAGCCTTATTTG+AGG 0.526249 8_3:-16593428 Msa1279520:intron
GTAGCATCTTCTTGATGCTT+AGG 0.527100 8_3:+16593196 None:intergenic
ATGCATAGACAAATGGTTGA+AGG 0.530723 8_3:-16592662 Msa1279520:CDS
TCCACAACATTGATAGGTGC+AGG 0.531437 8_3:+16593250 None:intergenic
AGACATTTAGATCGGCGAAA+CGG 0.531768 8_3:-16593994 Msa1279520:CDS
AGTTCTCTCTCTTGTTGCAG+AGG 0.532284 8_3:+16593862 None:intergenic
TTAGATTCTGGAAGATGGGT+CGG 0.533817 8_3:+16595414 None:intergenic
ATGTTAATCAAACTGCTACA+AGG 0.534912 8_3:+16594177 None:intergenic
AATATAAGGTCAAATGCCTC+AGG 0.537504 8_3:-16594117 Msa1279520:CDS
AATGGTTGAAGGAGATTCAC+AGG 0.539284 8_3:-16592651 Msa1279520:intron
AACTTCTCATATAACTTGAC+AGG 0.541026 8_3:+16593220 None:intergenic
CATTGGTGCAAGAGATGAGT+TGG 0.543000 8_3:-16594070 Msa1279520:CDS
ATAATGAAGCAAAACTGCAT+TGG 0.544858 8_3:+16595441 None:intergenic
GCTAAGGAGGAGGTTAGTGG+GGG 0.545739 8_3:-16591160 Msa1279520:three_prime_UTR
AGGTCGCGATGATCTTGAAC+CGG 0.546926 8_3:+16594266 None:intergenic
AGAAAAGAAAGCTAAGGAGG+AGG 0.550216 8_3:-16591170 Msa1279520:three_prime_UTR
CAATAGAAGATACAGAAGGA+TGG 0.550238 8_3:+16593281 None:intergenic
GAATAATCTAAGGCAAACAT+TGG 0.553467 8_3:-16593824 Msa1279520:CDS
AATAGAAGATACAGAAGGAT+GGG 0.553746 8_3:+16593282 None:intergenic
TTGAACGAAGAAGAAGAATA+CGG 0.557105 8_3:-16593630 Msa1279520:CDS
GTTCTCTCTCTTGTTGCAGA+GGG 0.557680 8_3:+16593863 None:intergenic
TAATCTAAGGCAAACATTGG+AGG 0.566240 8_3:-16593821 Msa1279520:CDS
ATCTCAAGACAGTGATAATG+AGG 0.569153 8_3:-16595233 Msa1279520:CDS
GTTGAGCATAATCTACATCC+AGG 0.571211 8_3:-16594201 Msa1279520:CDS
CTAATAGTAGCAAAGCCACT+AGG 0.571625 8_3:-16595315 Msa1279520:CDS
GCACCAATGCCACCGATGCA+AGG 0.578391 8_3:+16594084 None:intergenic
CATCATTTGAATTAGTGTCA+CGG 0.579541 8_3:+16593488 None:intergenic
CTATGAAATTCATGATTGCA+AGG 0.579951 8_3:+16592688 None:intergenic
AAGAAGAAGAATACGGTCAC+AGG 0.583067 8_3:-16593623 Msa1279520:CDS
TGCCTTGTAGAGTATAAGGA+TGG 0.589618 8_3:-16592730 Msa1279520:CDS
ACAGGGTATGCCCACTATGT+CGG 0.590225 8_3:-16591390 Msa1279520:intron
TAACCACTAAAGTTCCGAGT+TGG 0.590864 8_3:+16591340 None:intergenic
CTATTAGCACTATGATCTGA+CGG 0.595976 8_3:+16593781 None:intergenic
TTTCTGACTCACGTCCAACT+CGG 0.606833 8_3:-16591354 Msa1279520:CDS
ATCAGGATCTAATGGAGCAT+AGG 0.609326 8_3:-16593663 Msa1279520:CDS
CTGAGACTAGACATTTAGAT+CGG 0.612665 8_3:-16594002 Msa1279520:CDS
TTTAGAACTACTCTTCCTAG+TGG 0.613252 8_3:+16595300 None:intergenic
ATGTTGATATTCTAACATAG+AGG 0.615801 8_3:-16591042 Msa1279520:three_prime_UTR
CAGATAATGTTGATCGACGA+AGG 0.627645 8_3:+16593899 None:intergenic
AGTTAGACATACTAGATAGA+GGG 0.630416 8_3:+16593743 None:intergenic
TGAAATTCACCAGCAATCCG+TGG 0.631199 8_3:-16593314 Msa1279520:CDS
CCTCACAATTGCGAGAAGGT+AGG 0.637022 8_3:-16593687 Msa1279520:CDS
AGGGTATGCCCACTATGTCG+GGG 0.645233 8_3:-16591388 Msa1279520:CDS
GATCCAATAGAAGATACAGA+AGG 0.646146 8_3:+16593277 None:intergenic
CTTGTAGAAGATACAGGACA+AGG 0.647587 8_3:+16594246 None:intergenic
TACCCAACCTCTGAAGAGAA+CGG 0.647856 8_3:+16593599 None:intergenic
GAGACCTCACAATTGCGAGA+AGG 0.664773 8_3:-16593691 Msa1279520:CDS
ACTAATTCAAATGATGACAC+TGG 0.666491 8_3:-16593481 Msa1279520:CDS
CCTACCTTCTCGCAATTGTG+AGG 0.671964 8_3:+16593687 None:intergenic
GCAAGGAAAACCTAATCCTG+AGG 0.674456 8_3:+16594101 None:intergenic
CAATCTATCTGACTCAGATG+TGG 0.676485 8_3:-16594448 Msa1279520:CDS
GGGTATGCCCACTATGTCGG+GGG 0.682605 8_3:-16591387 Msa1279520:CDS
AATGGGTGAAAGAAAATGAG+AGG 0.694538 8_3:+16595515 None:intergenic
TTAACATAAATGAAACAGCA+CGG 0.696321 8_3:-16594161 Msa1279520:CDS
CTAAGGAGGAGGTTAGTGGG+GGG 0.732515 8_3:-16591159 Msa1279520:three_prime_UTR
AGGATGGGAAGATAAAACCA+CGG 0.736130 8_3:+16593297 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATATGAAAAATATAGT+TGG - chr8_3:16595367-16595386 Msa1279520:five_prime_UTR 10.0%
!! CATTAACATTATGAAAATTA+AGG + chr8_3:16591368-16591387 None:intergenic 15.0%
!!! CTTTTGTACTTATTTTAATT+AGG - chr8_3:16593220-16593239 Msa1279520:CDS 15.0%
!! AATTCAATACAATAGTAAAA+TGG + chr8_3:16594036-16594055 None:intergenic 15.0%
!!! GTTAAAATTTGCTTATAATT+TGG - chr8_3:16594224-16594243 Msa1279520:CDS 15.0%
!! ACAGAAAATAAGTATTTAAT+TGG - chr8_3:16594306-16594325 Msa1279520:CDS 15.0%
!! TACTAAAAACACTATAATAA+TGG - chr8_3:16594378-16594397 Msa1279520:CDS 15.0%
!!! TTGAATTTAATTTTGAAAGA+GGG + chr8_3:16594854-16594873 None:intergenic 15.0%
!!! ATATGCCAAAATTATATTTT+GGG + chr8_3:16595473-16595492 None:intergenic 15.0%
!!! AATATGCCAAAATTATATTT+TGG + chr8_3:16595474-16595493 None:intergenic 15.0%
!!! GTTTTGTTTTTTAAGGTATT+TGG - chr8_3:16591197-16591216 Msa1279520:three_prime_UTR 20.0%
!!! ATTTGATAACTAAAAAGAGT+TGG - chr8_3:16591731-16591750 Msa1279520:intron 20.0%
!! AAGCATATAATTTACTATTC+AGG + chr8_3:16591807-16591826 None:intergenic 20.0%
!! TGAATAGTAAATTATATGCT+TGG - chr8_3:16591806-16591825 Msa1279520:intron 20.0%
!!! CTTTATTTCTTATCAAATAC+TGG - chr8_3:16591850-16591869 Msa1279520:intron 20.0%
!! AAGATACTCCTATTAATATA+AGG - chr8_3:16592433-16592452 Msa1279520:intron 20.0%
!!! ATAGTTTTGATTACTAAACA+TGG + chr8_3:16592847-16592866 None:intergenic 20.0%
!!! TACTTATTTTAATTAGGTTC+TGG - chr8_3:16593226-16593245 Msa1279520:CDS 20.0%
!!! AATATTTTGATAAAAGCTAG+TGG + chr8_3:16593583-16593602 None:intergenic 20.0%
!!! AAACTTTTCAACTTTCAAAA+AGG + chr8_3:16593606-16593625 None:intergenic 20.0%
!!! AAAGTTGAAAAGTTTTATCA+TGG - chr8_3:16593611-16593630 Msa1279520:CDS 20.0%
!! CTAAAGATCAGAAAAATAAA+AGG + chr8_3:16593725-16593744 None:intergenic 20.0%
!!! ATTTGAAACTTTCATTTAAC+AGG + chr8_3:16593980-16593999 None:intergenic 20.0%
!! TTGATCATTGTCATATATTA+AGG + chr8_3:16594437-16594456 None:intergenic 20.0%
!!! CTTGAATTTAATTTTGAAAG+AGG + chr8_3:16594855-16594874 None:intergenic 20.0%
!! TGAAATAGTTTGGTTATAAA+TGG + chr8_3:16594908-16594927 None:intergenic 20.0%
!!! GGTATTTTCATTATTGTAAA+TGG - chr8_3:16595324-16595343 Msa1279520:CDS 20.0%
!! TTTCATATTTATTCTGCAAT+CGG + chr8_3:16595359-16595378 None:intergenic 20.0%
!!! TATGCCAAAATTATATTTTG+GGG + chr8_3:16595472-16595491 None:intergenic 20.0%
!!! TGAAGTTTTATGGTTGAAAT+GGG + chr8_3:16591069-16591088 None:intergenic 25.0%
!!! ATGAAGTTTTATGGTTGAAA+TGG + chr8_3:16591070-16591089 None:intergenic 25.0%
!! TTGGCTAAAATGAAGTTTTA+TGG + chr8_3:16591079-16591098 None:intergenic 25.0%
!!! TTTTTTAGATTCTGGAAGAT+GGG + chr8_3:16591157-16591176 None:intergenic 25.0%
!!! AAAGACAGCATTTTTATTTC+TGG - chr8_3:16591174-16591193 Msa1279520:three_prime_UTR 25.0%
!!! AAGACAGCATTTTTATTTCT+GGG - chr8_3:16591175-16591194 Msa1279520:three_prime_UTR 25.0%
!!! TTTCTGGGTTTTGTTTTTTA+AGG - chr8_3:16591190-16591209 Msa1279520:three_prime_UTR 25.0%
! AATACTCCTAAAAGATAAGT+AGG - chr8_3:16591638-16591657 Msa1279520:intron 25.0%
!! CTTAAACCTACTTATCTTTT+AGG + chr8_3:16591647-16591666 None:intergenic 25.0%
!!! ACACTCACTTATTTTTTAGA+AGG - chr8_3:16591697-16591716 Msa1279520:intron 25.0%
! TACTTTACTACTATCTCTAA+GGG + chr8_3:16591943-16591962 None:intergenic 25.0%
! TTACTTTACTACTATCTCTA+AGG + chr8_3:16591944-16591963 None:intergenic 25.0%
!!! TAACGACAATTTTGTTTGAT+TGG - chr8_3:16592002-16592021 Msa1279520:intron 25.0%
!!! AACGACAATTTTGTTTGATT+GGG - chr8_3:16592003-16592022 Msa1279520:intron 25.0%
! TGTGATCAGAATAAAGTAAA+TGG - chr8_3:16592066-16592085 Msa1279520:intron 25.0%
! TTAACATAAATGAAACAGCA+CGG - chr8_3:16592403-16592422 Msa1279520:intron 25.0%
! GCATTTGACCTTATATTAAT+AGG + chr8_3:16592444-16592463 None:intergenic 25.0%
!! ATTTTCTCAGAGAATTCAAA+CGG - chr8_3:16592527-16592546 Msa1279520:intron 25.0%
! ACGATATTCAGAATAATCTA+AGG - chr8_3:16592730-16592749 Msa1279520:CDS 25.0%
! TAATAAAGCTACCTCAAATA+AGG + chr8_3:16593150-16593169 None:intergenic 25.0%
! TCTTATCAGCTAAAATACAA+TGG - chr8_3:16593457-16593476 Msa1279520:CDS 25.0%
!! CAATGCAATTGATAACAATA+GGG + chr8_3:16593643-16593662 None:intergenic 25.0%
!! ACAATGCAATTGATAACAAT+AGG + chr8_3:16593644-16593663 None:intergenic 25.0%
! ATGTACACTGATGAATAAAT+AGG + chr8_3:16593689-16593708 None:intergenic 25.0%
!!! TTATTTTTCTGATCTTTAGC+TGG - chr8_3:16593726-16593745 Msa1279520:CDS 25.0%
! AGAAATTATAAGGTTAGCAT+TGG + chr8_3:16593801-16593820 None:intergenic 25.0%
! ATAGCATCTGAGAAATTATA+AGG + chr8_3:16593811-16593830 None:intergenic 25.0%
! AAAATGGCATGATGATTAAA+TGG + chr8_3:16594020-16594039 None:intergenic 25.0%
! AACTTAATCAAATTGCTGTA+GGG + chr8_3:16594193-16594212 None:intergenic 25.0%
! TAACTTAATCAAATTGCTGT+AGG + chr8_3:16594194-16594213 None:intergenic 25.0%
! TACAGCAATTTGATTAAGTT+AGG - chr8_3:16594193-16594212 Msa1279520:CDS 25.0%
! CGAATATAAACAAATCATAG+TGG + chr8_3:16594251-16594270 None:intergenic 25.0%
! TGGAACTTGGAATATTTAAT+TGG - chr8_3:16594279-16594298 Msa1279520:CDS 25.0%
! ATATGTATGCTATAAATCTC+TGG + chr8_3:16594630-16594649 None:intergenic 25.0%
!! AGCATACATATTTTCAATCA+TGG - chr8_3:16594639-16594658 Msa1279520:intron 25.0%
!! GCATACATATTTTCAATCAT+GGG - chr8_3:16594640-16594659 Msa1279520:intron 25.0%
! ATGTCTCGTCTAATAATATT+GGG + chr8_3:16594961-16594980 None:intergenic 25.0%
! AATGTCTCGTCTAATAATAT+TGG + chr8_3:16594962-16594981 None:intergenic 25.0%
!! AAACACTTGATCTTTTATGT+GGG - chr8_3:16595271-16595290 Msa1279520:CDS 25.0%
! ATAGAAAATGATTGAACTTC+TGG + chr8_3:16595303-16595322 None:intergenic 25.0%
!! GAAGTTCAATCATTTTCTAT+TGG - chr8_3:16595303-16595322 Msa1279520:CDS 25.0%
! ATGTTGATATTCTAACATAG+AGG - chr8_3:16595522-16595541 Msa1279520:five_prime_UTR 25.0%
! TTGTTCTTTACAACTATTCT+AGG - chr8_3:16595601-16595620 Msa1279520:five_prime_UTR 25.0%
! AAAAGGTCGCATTTTTATGT+TGG + chr8_3:16591021-16591040 None:intergenic 30.0%
AATGAGAGGATGAAAGTAAA+AGG + chr8_3:16591038-16591057 None:intergenic 30.0%
! AACAATGTGTTGCATTGTTT+TGG + chr8_3:16591098-16591117 None:intergenic 30.0%
ATAATGAAGCAAAACTGCAT+TGG + chr8_3:16591126-16591145 None:intergenic 30.0%
!!! CTTTTTTAGATTCTGGAAGA+TGG + chr8_3:16591158-16591177 None:intergenic 30.0%
!!! ATGCTGTCTTTTTTAGATTC+TGG + chr8_3:16591165-16591184 None:intergenic 30.0%
!!! TTGGAAGTTTTTTCTTGTTG+TGG - chr8_3:16591216-16591235 Msa1279520:three_prime_UTR 30.0%
!!! TGGAAGTTTTTTCTTGTTGT+GGG - chr8_3:16591217-16591236 Msa1279520:three_prime_UTR 30.0%
!!! AGGATTTTGATGTTACTTTC+TGG - chr8_3:16591481-16591500 Msa1279520:intron 30.0%
AAGTAGTTAAATACACCTTG+AGG - chr8_3:16591602-16591621 Msa1279520:intron 30.0%
! TTTAAGTTAGCAGCTTCTAT+AGG - chr8_3:16591661-16591680 Msa1279520:intron 30.0%
ACTTTACTACTATCTCTAAG+GGG + chr8_3:16591942-16591961 None:intergenic 30.0%
TCATATTCAAATGGCACTAA+TGG + chr8_3:16591967-16591986 None:intergenic 30.0%
! TGGTGAAATCAAAGTCTTTT+AGG - chr8_3:16592136-16592155 Msa1279520:intron 30.0%
!! GAAATCAAAGTCTTTTAGGA+AGG - chr8_3:16592140-16592159 Msa1279520:intron 30.0%
ATGTTAATCAAACTGCTACA+AGG + chr8_3:16592390-16592409 None:intergenic 30.0%
TTTAGTCGAACTTTAAGTGT+TGG - chr8_3:16592624-16592643 Msa1279520:intron 30.0%
! GAATAATCTAAGGCAAACAT+TGG - chr8_3:16592740-16592759 Msa1279520:CDS 30.0%
AGTTAGACATACTAGATAGA+GGG + chr8_3:16592824-16592843 None:intergenic 30.0%
TTGAACGAAGAAGAAGAATA+CGG - chr8_3:16592934-16592953 Msa1279520:intron 30.0%
CATCATTTGAATTAGTGTCA+CGG + chr8_3:16593079-16593098 None:intergenic 30.0%
ACTAATTCAAATGATGACAC+TGG - chr8_3:16593083-16593102 Msa1279520:intron 30.0%
AATAGAAGATACAGAAGGAT+GGG + chr8_3:16593285-16593304 None:intergenic 30.0%
AACTTCTCATATAACTTGAC+AGG + chr8_3:16593347-16593366 None:intergenic 30.0%
TATATGCCTTGTAGAGTATA+AGG - chr8_3:16593830-16593849 Msa1279520:CDS 30.0%
CTATGAAATTCATGATTGCA+AGG + chr8_3:16593879-16593898 None:intergenic 30.0%
ATAGAACATGCATAGACAAA+TGG - chr8_3:16593895-16593914 Msa1279520:CDS 30.0%
TAGTAAACAAGAAGGAAATC+TGG + chr8_3:16593956-16593975 None:intergenic 30.0%
TAACAGGATAGTAAACAAGA+AGG + chr8_3:16593964-16593983 None:intergenic 30.0%
TTGAATTAAGCATATTTCGC+TGG - chr8_3:16594049-16594068 Msa1279520:CDS 30.0%
AGCAATTTGATTAAGTTAGG+TGG - chr8_3:16594196-16594215 Msa1279520:CDS 30.0%
GCAATTTGATTAAGTTAGGT+GGG - chr8_3:16594197-16594216 Msa1279520:CDS 30.0%
CAATTTGATTAAGTTAGGTG+GGG - chr8_3:16594198-16594217 Msa1279520:CDS 30.0%
! TGTTTATATTCGAGTCTTGT+TGG - chr8_3:16594259-16594278 Msa1279520:CDS 30.0%
TAGTACAAATAATGCAGAAC+TGG + chr8_3:16594363-16594382 None:intergenic 30.0%
ATATATTAAGGTGCATGACA+TGG + chr8_3:16594425-16594444 None:intergenic 30.0%
! TCTTTTGTATTGGAAGGAAA+TGG + chr8_3:16594570-16594589 None:intergenic 30.0%
!! ATGTTTGAGGTCTTTTGTAT+TGG + chr8_3:16594580-16594599 None:intergenic 30.0%
AGGTAATATGGTTATGTTTG+AGG + chr8_3:16594593-16594612 None:intergenic 30.0%
TTTCATCTCGTTTGAATATC+TGG - chr8_3:16594764-16594783 Msa1279520:intron 30.0%
AAGAATCCCAATATCATTAG+AGG + chr8_3:16595022-16595041 None:intergenic 30.0%
! AAAACGCGACATTCTTTTTA+AGG + chr8_3:16595047-16595066 None:intergenic 30.0%
TAACCTCTTCAATTATACAC+AGG - chr8_3:16595156-16595175 Msa1279520:intron 30.0%
AACCTCTTCAATTATACACA+GGG - chr8_3:16595157-16595176 Msa1279520:intron 30.0%
! GAAACACTTGATCTTTTATG+TGG - chr8_3:16595270-16595289 Msa1279520:CDS 30.0%
! AACACTTGATCTTTTATGTG+GGG - chr8_3:16595272-16595291 Msa1279520:CDS 30.0%
! GTCTCCCCAAAATATAATTT+TGG - chr8_3:16595465-16595484 Msa1279520:five_prime_UTR 30.0%
AATGGGTGAAAGAAAATGAG+AGG + chr8_3:16591052-16591071 None:intergenic 35.0%
!!! TTTTTTCTTGTTGTGGGTCA+TGG - chr8_3:16591223-16591242 Msa1279520:three_prime_UTR 35.0%
!! TTTTTCTTGTTGTGGGTCAT+GGG - chr8_3:16591224-16591243 Msa1279520:three_prime_UTR 35.0%
! TTTAGAACTACTCTTCCTAG+TGG + chr8_3:16591267-16591286 None:intergenic 35.0%
!! ACTAGGAAGAGTAGTTCTAA+AGG - chr8_3:16591266-16591285 Msa1279520:three_prime_UTR 35.0%
!! AGTAGTTCTAAAGGACTGAA+AGG - chr8_3:16591275-16591294 Msa1279520:three_prime_UTR 35.0%
!! GTAGTTCTAAAGGACTGAAA+GGG - chr8_3:16591276-16591295 Msa1279520:three_prime_UTR 35.0%
GGGTTTCATTCTTATTGTCT+TGG - chr8_3:16591296-16591315 Msa1279520:three_prime_UTR 35.0%
TATTGTCTTGGAACATGTTC+TGG - chr8_3:16591308-16591327 Msa1279520:three_prime_UTR 35.0%
! ATCTCAAGACAGTGATAATG+AGG - chr8_3:16591331-16591350 Msa1279520:exon 35.0%
GTAACATCAAAATCCTTGAC+AGG + chr8_3:16591477-16591496 None:intergenic 35.0%
! AGCTTCTATAGGAATTTGCT+AGG - chr8_3:16591672-16591691 Msa1279520:intron 35.0%
TTATCAAATACTGGTCCATG+AGG - chr8_3:16591859-16591878 Msa1279520:intron 35.0%
GACAGTCAGTCATATTCAAA+TGG + chr8_3:16591976-16591995 None:intergenic 35.0%
CCACATAATGAGTCACAATT+AGG + chr8_3:16592044-16592063 None:intergenic 35.0%
CCTAATTGTGACTCATTATG+TGG - chr8_3:16592041-16592060 Msa1279520:intron 35.0%
! GATGTTACATGTGCTGATAA+TGG - chr8_3:16592093-16592112 Msa1279520:intron 35.0%
!! TCTTTTAGGAAGGTTAAAGC+TGG - chr8_3:16592150-16592169 Msa1279520:intron 35.0%
TCCAGACTTAGCATATTTAC+CGG - chr8_3:16592279-16592298 Msa1279520:intron 35.0%
AATATAAGGTCAAATGCCTC+AGG - chr8_3:16592447-16592466 Msa1279520:intron 35.0%
CTGAGACTAGACATTTAGAT+CGG - chr8_3:16592562-16592581 Msa1279520:intron 35.0%
! TAATCTAAGGCAAACATTGG+AGG - chr8_3:16592743-16592762 Msa1279520:CDS 35.0%
CTATTAGCACTATGATCTGA+CGG + chr8_3:16592786-16592805 None:intergenic 35.0%
GAGTTAGACATACTAGATAG+AGG + chr8_3:16592825-16592844 None:intergenic 35.0%
TCTTCTTCGTTCAAGGAAAT+TGG + chr8_3:16592928-16592947 None:intergenic 35.0%
GTATTCTTCTTCTTCGTTCA+AGG + chr8_3:16592935-16592954 None:intergenic 35.0%
!! GTGCAGATTGATTTTCATAC+CGG + chr8_3:16592992-16593011 None:intergenic 35.0%
CAATAGAAGATACAGAAGGA+TGG + chr8_3:16593286-16593305 None:intergenic 35.0%
CATCCTTCTGTATCTTCTAT+TGG - chr8_3:16593284-16593303 Msa1279520:CDS 35.0%
GATCCAATAGAAGATACAGA+AGG + chr8_3:16593290-16593309 None:intergenic 35.0%
AATGACTCCACAACATTGAT+AGG + chr8_3:16593323-16593342 None:intergenic 35.0%
! TATTTGAGTTTACCGCTGTT+TGG - chr8_3:16593399-16593418 Msa1279520:intron 35.0%
AGTTTAAATCGTCCAAACAG+CGG + chr8_3:16593414-16593433 None:intergenic 35.0%
TCAGCTAAAATACAATGGAG+TGG - chr8_3:16593462-16593481 Msa1279520:CDS 35.0%
TCAGTGTACATGTATGTTTG+CGG - chr8_3:16593698-16593717 Msa1279520:CDS 35.0%
ATGCATAGACAAATGGTTGA+AGG - chr8_3:16593902-16593921 Msa1279520:CDS 35.0%
TCCATAATAGTGCAAACCAA+CGG + chr8_3:16594504-16594523 None:intergenic 35.0%
! TTGAGGTCTTTTGTATTGGA+AGG + chr8_3:16594576-16594595 None:intergenic 35.0%
TATGTTGCCGAGTTAGAAAA+GGG + chr8_3:16594671-16594690 None:intergenic 35.0%
ATATGTTGCCGAGTTAGAAA+AGG + chr8_3:16594672-16594691 None:intergenic 35.0%
! GTTTTCTCATTTAGTAGCAC+AGG - chr8_3:16594719-16594738 Msa1279520:intron 35.0%
GCAACGAAACATTGAATTCA+AGG + chr8_3:16594798-16594817 None:intergenic 35.0%
GCTTACGTGTTGAAATAGTT+TGG + chr8_3:16594918-16594937 None:intergenic 35.0%
TTGTCCTCCTCTAATGATAT+TGG - chr8_3:16595012-16595031 Msa1279520:intron 35.0%
TGTCCTCCTCTAATGATATT+GGG - chr8_3:16595013-16595032 Msa1279520:intron 35.0%
AATCCCAATATCATTAGAGG+AGG + chr8_3:16595019-16595038 None:intergenic 35.0%
GATACATACAAATACTCTCG+AGG + chr8_3:16595136-16595155 None:intergenic 35.0%
TACCCTGTGTATAATTGAAG+AGG + chr8_3:16595162-16595181 None:intergenic 35.0%
! ACACTTGATCTTTTATGTGG+GGG - chr8_3:16595273-16595292 Msa1279520:CDS 35.0%
GGAGAAAGAAAAGAAAGCTA+AGG - chr8_3:16595388-16595407 Msa1279520:five_prime_UTR 35.0%
GAAAGAAAAGAAAGCTAAGG+AGG - chr8_3:16595391-16595410 Msa1279520:five_prime_UTR 35.0%
! TTAGATTCTGGAAGATGGGT+CGG + chr8_3:16591153-16591172 None:intergenic 40.0%
CTAATAGTAGCAAAGCCACT+AGG - chr8_3:16591249-16591268 Msa1279520:three_prime_UTR 40.0%
! AGACAGTGATAATGAGGAAC+AGG - chr8_3:16591337-16591356 Msa1279520:exon 40.0%
GTGATTATACCAACCTGTCA+AGG - chr8_3:16591461-16591480 Msa1279520:intron 40.0%
CATCAAAATCCTTGACAGGT+TGG + chr8_3:16591473-16591492 None:intergenic 40.0%
! TTTTAGCAACATGCACCTCA+AGG + chr8_3:16591620-16591639 None:intergenic 40.0%
CAATCTATCTGACTCAGATG+TGG - chr8_3:16592116-16592135 Msa1279520:intron 40.0%
! CTACTAGTCGATTCCTTTCT+CGG - chr8_3:16592229-16592248 Msa1279520:intron 40.0%
!! AGTCTGGAGCTTTTATTACC+AGG + chr8_3:16592267-16592286 None:intergenic 40.0%
ACCGGTAAATATGCTAAGTC+TGG + chr8_3:16592283-16592302 None:intergenic 40.0%
CTTGTAGAAGATACAGGACA+AGG + chr8_3:16592321-16592340 None:intergenic 40.0%
! GAGAGTCTTGTAGAAGATAC+AGG + chr8_3:16592327-16592346 None:intergenic 40.0%
GTTGAGCATAATCTACATCC+AGG - chr8_3:16592363-16592382 Msa1279520:intron 40.0%
! GGATTAGGTTTTCCTTGCAT+CGG - chr8_3:16592468-16592487 Msa1279520:intron 40.0%
AGACATTTAGATCGGCGAAA+CGG - chr8_3:16592570-16592589 Msa1279520:intron 40.0%
CAGATAATGTTGATCGACGA+AGG + chr8_3:16592668-16592687 None:intergenic 40.0%
!! CATACTAGATAGAGGGTATC+TGG + chr8_3:16592817-16592836 None:intergenic 40.0%
AGGTAGGTATCAGGATCTAA+TGG - chr8_3:16592893-16592912 Msa1279520:intron 40.0%
ATCAGGATCTAATGGAGCAT+AGG - chr8_3:16592901-16592920 Msa1279520:intron 40.0%
AAGAAGAAGAATACGGTCAC+AGG - chr8_3:16592941-16592960 Msa1279520:intron 40.0%
GAGAGATCATGTATCTTGTC+TGG - chr8_3:16593014-16593033 Msa1279520:intron 40.0%
!! ACTTGCAGAAGCCTTATTTG+AGG - chr8_3:16593136-16593155 Msa1279520:intron 40.0%
! AAGATAAAACCACGGATTGC+TGG + chr8_3:16593262-16593281 None:intergenic 40.0%
AGGATGGGAAGATAAAACCA+CGG + chr8_3:16593270-16593289 None:intergenic 40.0%
GTAGCATCTTCTTGATGCTT+AGG + chr8_3:16593371-16593390 None:intergenic 40.0%
GCTGTTTGGACGATTTAAAC+TGG - chr8_3:16593413-16593432 Msa1279520:intron 40.0%
! TTCTGATCTTTAGCTGGCTT+AGG - chr8_3:16593732-16593751 Msa1279520:CDS 40.0%
TGCCTTGTAGAGTATAAGGA+TGG - chr8_3:16593834-16593853 Msa1279520:CDS 40.0%
CTCCATCCTTATACTCTACA+AGG + chr8_3:16593839-16593858 None:intergenic 40.0%
AATGGTTGAAGGAGATTCAC+AGG - chr8_3:16593913-16593932 Msa1279520:CDS 40.0%
TATTCAAGCGCAGATAGAGT+AGG + chr8_3:16594084-16594103 None:intergenic 40.0%
!! ATTCGAGTCTTGTTGGAACT+TGG - chr8_3:16594266-16594285 Msa1279520:CDS 40.0%
TTAAGGTGCATGACATGGTT+TGG + chr8_3:16594420-16594439 None:intergenic 40.0%
ACCAACGGCATTTGGTATTA+GGG + chr8_3:16594489-16594508 None:intergenic 40.0%
AACCAACGGCATTTGGTATT+AGG + chr8_3:16594490-16594509 None:intergenic 40.0%
CCTCATACGTACAGGTAATA+TGG + chr8_3:16594605-16594624 None:intergenic 40.0%
CCATATTACCTGTACGTATG+AGG - chr8_3:16594602-16594621 Msa1279520:intron 40.0%
ATGTTGCCGAGTTAGAAAAG+GGG + chr8_3:16594670-16594689 None:intergenic 40.0%
ACAATGTGTGCTCAATGTGA+CGG + chr8_3:16594990-16595009 None:intergenic 40.0%
TAACCACTAAAGTTCCGAGT+TGG + chr8_3:16595227-16595246 None:intergenic 40.0%
AGAAAAGAAAGCTAAGGAGG+AGG - chr8_3:16595394-16595413 Msa1279520:five_prime_UTR 40.0%
CGAGAAAGGAATCGACTAGT+AGG + chr8_3:16592231-16592250 None:intergenic 45.0%
! AGTCGATTCCTTTCTCGGTT+TGG - chr8_3:16592234-16592253 Msa1279520:intron 45.0%
ATCAAACTGCTACAAGGTCC+TGG + chr8_3:16592384-16592403 None:intergenic 45.0%
AGGTCAAATGCCTCAGGATT+AGG - chr8_3:16592453-16592472 Msa1279520:intron 45.0%
GCAAGGAAAACCTAATCCTG+AGG + chr8_3:16592466-16592485 None:intergenic 45.0%
! TTAGGTTTTCCTTGCATCGG+TGG - chr8_3:16592471-16592490 Msa1279520:intron 45.0%
CATTGGTGCAAGAGATGAGT+TGG - chr8_3:16592494-16592513 Msa1279520:intron 45.0%
CTCTTGTTGCAGAGGGAAAA+AGG + chr8_3:16592697-16592716 None:intergenic 45.0%
GTTCTCTCTCTTGTTGCAGA+GGG + chr8_3:16592704-16592723 None:intergenic 45.0%
AGTTCTCTCTCTTGTTGCAG+AGG + chr8_3:16592705-16592724 None:intergenic 45.0%
ATTGCGAGAAGGTAGGTATC+AGG - chr8_3:16592884-16592903 Msa1279520:intron 45.0%
! TACCCAACCTCTGAAGAGAA+CGG + chr8_3:16592968-16592987 None:intergenic 45.0%
TGAAATTCACCAGCAATCCG+TGG - chr8_3:16593250-16593269 Msa1279520:CDS 45.0%
TCCTGCACCTATCAATGTTG+TGG - chr8_3:16593313-16593332 Msa1279520:CDS 45.0%
TCCACAACATTGATAGGTGC+AGG + chr8_3:16593317-16593336 None:intergenic 45.0%
GCATATTTCGCTGGACCTTA+TGG - chr8_3:16594058-16594077 Msa1279520:CDS 45.0%
TCCCTAATACCAAATGCCGT+TGG - chr8_3:16594485-16594504 Msa1279520:CDS 45.0%
TAGTGCAAACCAACGGCATT+TGG + chr8_3:16594497-16594516 None:intergenic 45.0%
!! GCCGTTGGTTTGCACTATTA+TGG - chr8_3:16594500-16594519 Msa1279520:intron 45.0%
! GGATACCCCCTTTTCTAACT+CGG - chr8_3:16594661-16594680 Msa1279520:intron 45.0%
TGTTGCCGAGTTAGAAAAGG+GGG + chr8_3:16594669-16594688 None:intergenic 45.0%
TTTCTGACTCACGTCCAACT+CGG - chr8_3:16595210-16595229 Msa1279520:intron 45.0%
AAAGCTAAGGAGGAGGTTAG+TGG - chr8_3:16595401-16595420 Msa1279520:five_prime_UTR 45.0%
AAGCTAAGGAGGAGGTTAGT+GGG - chr8_3:16595402-16595421 Msa1279520:five_prime_UTR 45.0%
! GTTAGTGGGGGGTTATCTTT+TGG - chr8_3:16595416-16595435 Msa1279520:five_prime_UTR 45.0%
! TCCATGAGGTGTCAACTCAG+CGG - chr8_3:16591873-16591892 Msa1279520:intron 50.0%
AGGTCGCGATGATCTTGAAC+CGG + chr8_3:16592301-16592320 None:intergenic 50.0%
! TTTCCTTGCATCGGTGGCAT+TGG - chr8_3:16592477-16592496 Msa1279520:intron 50.0%
GAGACCTCACAATTGCGAGA+AGG - chr8_3:16592873-16592892 Msa1279520:intron 50.0%
CCTACCTTCTCGCAATTGTG+AGG + chr8_3:16592880-16592899 None:intergenic 50.0%
CCTCACAATTGCGAGAAGGT+AGG - chr8_3:16592877-16592896 Msa1279520:intron 50.0%
GTCCGTTCTCTTCAGAGGTT+GGG - chr8_3:16592963-16592982 Msa1279520:intron 50.0%
CGCAGATAGAGTAGGCCATA+AGG + chr8_3:16594076-16594095 None:intergenic 50.0%
! CTCTGGTTCCTCATACGTAC+AGG + chr8_3:16594613-16594632 None:intergenic 50.0%
ACAGGGTATGCCCACTATGT+CGG - chr8_3:16595174-16595193 Msa1279520:intron 50.0%
CGTCCAACTCGGAACTTTAG+TGG - chr8_3:16595221-16595240 Msa1279520:intron 50.0%
AGCTAAGGAGGAGGTTAGTG+GGG - chr8_3:16595403-16595422 Msa1279520:five_prime_UTR 50.0%
! ACCGCTGAGTTGACACCTCA+TGG + chr8_3:16591877-16591896 None:intergenic 55.0%
GAGTGACGCCAAACCGAGAA+AGG + chr8_3:16592245-16592264 None:intergenic 55.0%
CACAGGTCCGTTCTCTTCAG+AGG - chr8_3:16592958-16592977 Msa1279520:intron 55.0%
GGTCCGTTCTCTTCAGAGGT+TGG - chr8_3:16592962-16592981 Msa1279520:intron 55.0%
CTCTTCAGAGGTTGGGTAGC+CGG - chr8_3:16592970-16592989 Msa1279520:intron 55.0%
CAGGGTATGCCCACTATGTC+GGG - chr8_3:16595175-16595194 Msa1279520:intron 55.0%
AGGGTATGCCCACTATGTCG+GGG - chr8_3:16595176-16595195 Msa1279520:intron 55.0%
AGACGTTCCCCCGACATAGT+GGG + chr8_3:16595187-16595206 None:intergenic 55.0%
GCTAAGGAGGAGGTTAGTGG+GGG - chr8_3:16595404-16595423 Msa1279520:five_prime_UTR 55.0%
CTAAGGAGGAGGTTAGTGGG+GGG - chr8_3:16595405-16595424 Msa1279520:five_prime_UTR 55.0%
!! TCTCGGTTTGGCGTCACTCC+TGG - chr8_3:16592246-16592265 Msa1279520:intron 60.0%
GCACCAATGCCACCGATGCA+AGG + chr8_3:16592483-16592502 None:intergenic 60.0%
GGGTATGCCCACTATGTCGG+GGG - chr8_3:16595177-16595196 Msa1279520:intron 60.0%
CAGACGTTCCCCCGACATAG+TGG + chr8_3:16595188-16595207 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 16590952 16595634 16590952 ID=Msa1279520;Name=Msa1279520
chr8_3 mRNA 16590952 16595634 16590952 ID=Msa1279520-mRNA-1;Parent=Msa1279520;Name=Msa1279520-mRNA-1;_AED=0.02;_eAED=0.02;_QI=290|1|1|1|0.75|0.8|5|387|510
chr8_3 exon 16590952 16591408 16590952 ID=Msa1279520-mRNA-1:exon:6523;Parent=Msa1279520-mRNA-1
chr8_3 exon 16592652 16592762 16592652 ID=Msa1279520-mRNA-1:exon:6522;Parent=Msa1279520-mRNA-1
chr8_3 exon 16593193 16593344 16593193 ID=Msa1279520-mRNA-1:exon:6521;Parent=Msa1279520-mRNA-1
chr8_3 exon 16593429 16594511 16593429 ID=Msa1279520-mRNA-1:exon:6520;Parent=Msa1279520-mRNA-1
chr8_3 exon 16595228 16595634 16595228 ID=Msa1279520-mRNA-1:exon:6519;Parent=Msa1279520-mRNA-1
chr8_3 five_prime_UTR 16595345 16595634 16595345 ID=Msa1279520-mRNA-1:five_prime_utr;Parent=Msa1279520-mRNA-1
chr8_3 CDS 16595228 16595344 16595228 ID=Msa1279520-mRNA-1:cds;Parent=Msa1279520-mRNA-1
chr8_3 CDS 16593429 16594511 16593429 ID=Msa1279520-mRNA-1:cds;Parent=Msa1279520-mRNA-1
chr8_3 CDS 16593193 16593344 16593193 ID=Msa1279520-mRNA-1:cds;Parent=Msa1279520-mRNA-1
chr8_3 CDS 16592652 16592762 16592652 ID=Msa1279520-mRNA-1:cds;Parent=Msa1279520-mRNA-1
chr8_3 CDS 16591339 16591408 16591339 ID=Msa1279520-mRNA-1:cds;Parent=Msa1279520-mRNA-1
chr8_3 three_prime_UTR 16590952 16591338 16590952 ID=Msa1279520-mRNA-1:three_prime_utr;Parent=Msa1279520-mRNA-1
Gene Sequence

>Msa1279520

ATGGGTTCTAATAGTAGCAAAGCCACTAGGAAGAGTAGTTCTAAAGGACTGAAAGGGTTTCATTCTTATTGTCTTGGAACATGTTCTGGATCTCAAGACAGTGATAATGAGGAACAGAATAAAGTAAATGGCAGTGATGTTACATGTGCTGATAATGGCAATCTATCTGACTCAGATGTGGTGAAATCAAAGTCTTTTAGGAAGGTTAAAGCTGGTGACAGTGACAATACTCGCAACTCTGTTCACGCTTCTTCAACTAATTTGTTGAATCCTACTAGTCGATTCCTTTCTCGGTTTGGCGTCACTCCTGGTAATAAAAGCTCCAGACTTAGCATATTTACCGGTTCAAGATCATCGCGACCTTGTCCTGTATCTTCTACAAGACTCTCAATATTTGACGATGATGTTGAGCATAATCTACATCCAGGACCTTGTAGCAGTTTGATTAACATAAATGAAACAGCACGGTGTCATGAAGATACTCCTATTAATATAAGGTCAAATGCCTCAGGATTAGGTTTTCCTTGCATCGGTGGCATTGGTGCAAGAGATGAGTTGGAGATAAACTTATTTTCTCAGAGAATTCAAACGGAGACAGAACATACTGAGACTAGACATTTAGATCGGCGAAACGGAGCTCGAGAACAAGTTGAAGAGAATGTTCGTTTTAGTCGAACTTTAAGTGTTGGAAGACTTCGTGACAGAGTCCTTCGTCGATCAACATTATCTGACGTTACCTTTTTCCCTCTGCAACAAGAGAGAGAACTGAGAAACGATATTCAGAATAATCTAAGGCAAACATTGGAGGCAGATTCAAGAGTGTCACCGTCAGATCATAGTGCTAATAGTTCTACATCCAGATACCCTCTATCTAGTATGTCTAACTCCATGTTTAGTAATCAAAACTATCGTGTTGAGACCTCACAATTGCGAGAAGGTAGGTATCAGGATCTAATGGAGCATAGGTCCAATTTCCTTGAACGAAGAAGAAGAATACGGTCACAGGTCCGTTCTCTTCAGAGGTTGGGTAGCCGGTATGAAAATCAATCTGCACATGAGAGATCATGTATCTTGTCTGGTCAACATAGAAGTGCTCGTTGTATGTGTCGATTCAGAAACCGTGACACTAATTCAAATGATGACACTGGTGCTAGAGCTAGCATATCAAGAATTGTTGTACTTGCAGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCCGTGGTTTTATCTTCCCATCCTTCTGTATCTTCTATTGGATCTGTTCCTGCACCTATCAATGTTGTGGAGTCATTGCCTGTCAAGTTATATGAGAAGTTGCCTAAGCATCAAGAAGATGCTACACAATGCTATATATGCCTTGTAGAGTATAAGGATGGAGACAGCGTGCGAGTTCTGCCTTGCAATCATGAATTTCATAGAACATGCATAGACAAATGGTTGAAGGAGATTCACAGGGTATGCCCACTATGTCGGGGGAACGTCTGCATTTCTGACTCACGTCCAACTCGGAACTTTAGTGGTTAG
Protein sequence

>Msa1279520

MGSNSSKATRKSSSKGLKGFHSYCLGTCSGSQDSDNEEQNKVNGSDVTCADNGNLSDSDVVKSKSFRKVKAGDSDNTRNSVHASSTNLLNPTSRFLSRFGVTPGNKSSRLSIFTGSRSSRPCPVSSTRLSIFDDDVEHNLHPGPCSSLININETARCHEDTPINIRSNASGLGFPCIGGIGARDELEINLFSQRIQTETEHTETRHLDRRNGAREQVEENVRFSRTLSVGRLRDRVLRRSTLSDVTFFPLQQERELRNDIQNNLRQTLEADSRVSPSDHSANSSTSRYPLSSMSNSMFSNQNYRVETSQLREGRYQDLMEHRSNFLERRRRIRSQVRSLQRLGSRYENQSAHERSCILSGQHRSARCMCRFRNRDTNSNDDTGARASISRIVVLAEALFEVLDEIHQQSVVLSSHPSVSSIGSVPAPINVVESLPVKLYEKLPKHQEDATQCYICLVEYKDGDSVRVLPCNHEFHRTCIDKWLKEIHRVCPLCRGNVCISDSRPTRNFSG*