AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1200140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1200140 MtrunA17_Chr8g0369691 90.588 510 39 2 1 509 1 502 0.0 889
Msa1200140 MtrunA17_Chr5g0408871 61.922 541 161 10 10 507 22 560 0.0 577
Msa1200140 MtrunA17_Chr4g0065171 49.724 181 72 7 321 498 366 530 5.21e-37 143
Msa1200140 MtrunA17_Chr5g0405931 44.068 59 33 0 448 506 53 111 2.24e-14 70.1
Msa1200140 MtrunA17_Chr1g0203541 45.205 73 34 3 430 497 110 181 2.49e-14 72.0
Msa1200140 MtrunA17_Chr1g0171061 41.176 68 34 2 439 506 45 106 3.66e-14 69.7
Msa1200140 MtrunA17_Chr5g0425981 44.643 56 30 1 439 494 45 99 6.45e-13 65.9
Msa1200140 MtrunA17_Chr3g0121201 39.759 83 40 3 422 503 214 287 3.28e-12 68.2
Msa1200140 MtrunA17_Chr3g0104301 38.095 63 34 1 444 506 50 107 4.23e-12 63.5
Msa1200140 MtrunA17_Chr3g0104321 38.095 63 34 1 444 506 50 107 4.23e-12 63.5
Msa1200140 MtrunA17_Chr5g0427431 46.377 69 34 3 430 497 139 205 6.07e-12 67.8
Msa1200140 MtrunA17_Chr1g0177041 49.254 67 30 3 431 494 80 145 6.60e-12 63.9
Msa1200140 MtrunA17_Chr8g0381731 40.909 88 48 4 411 497 135 219 6.77e-12 66.2
Msa1200140 MtrunA17_Chr8g0382811 33.613 119 61 5 398 501 4 119 6.78e-12 63.5
Msa1200140 MtrunA17_Chr6g0451031 41.176 68 36 3 431 497 50 114 9.26e-12 62.4
Msa1200140 MtrunA17_Chr5g0427771 37.879 66 33 2 444 506 48 108 1.17e-11 62.4
Msa1200140 MtrunA17_Chr3g0128771 59.574 47 17 2 449 494 116 161 1.29e-11 63.5
Msa1200140 MtrunA17_Chr5g0427781 38.333 60 32 1 447 506 54 108 1.32e-11 62.4
Msa1200140 MtrunA17_Chr3g0104311 36.508 63 35 1 444 506 50 107 1.34e-11 62.4
Msa1200140 MtrunA17_Chr1g0148631 54.902 51 21 2 447 497 337 385 1.74e-11 66.2
Msa1200140 MtrunA17_Chr2g0297011 43.662 71 37 3 433 502 84 152 1.93e-11 62.4
Msa1200140 MtrunA17_Chr0c01g0489421 39.344 61 37 0 437 497 42 102 2.00e-11 61.6
Msa1200140 MtrunA17_Chr6g0470751 31.092 119 75 5 384 497 55 171 2.06e-11 65.1
Msa1200140 MtrunA17_Chr5g0417501 38.356 73 39 2 422 494 90 156 2.62e-11 63.5
Msa1200140 MtrunA17_Chr5g0416351 38.235 68 36 2 439 506 63 124 2.69e-11 62.0
Msa1200140 MtrunA17_Chr3g0124531 50.000 46 23 0 452 497 69 114 3.19e-11 61.6
Msa1200140 MtrunA17_Chr8g0350741 39.506 81 43 4 422 498 60 138 3.47e-11 62.0
Msa1200140 MtrunA17_Chr4g0057351 56.863 51 20 2 447 497 312 360 4.53e-11 64.7
Msa1200140 MtrunA17_Chr7g0246571 56.364 55 22 2 447 501 308 360 4.58e-11 64.7
Msa1200140 MtrunA17_Chr5g0416361 38.235 68 36 2 439 506 45 106 4.68e-11 60.8
Msa1200140 MtrunA17_Chr6g0486651 44.444 72 37 3 431 501 99 168 4.99e-11 64.3
Msa1200140 MtrunA17_Chr7g0276591 45.588 68 29 4 430 494 81 143 5.32e-11 63.5
Msa1200140 MtrunA17_Chr5g0411081 52.941 51 22 2 448 497 144 193 6.23e-11 64.3
Msa1200140 MtrunA17_Chr5g0446921 49.091 55 27 1 440 494 282 335 6.27e-11 63.9
Msa1200140 MtrunA17_Chr5g0397921 53.846 52 22 2 446 497 327 376 7.29e-11 63.9
Msa1200140 MtrunA17_Chr8g0383881 60.870 46 16 2 450 494 128 172 8.43e-11 62.0
Msa1200140 MtrunA17_Chr1g0161291 54.902 51 21 2 447 497 295 343 9.11e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1200140 AT5G45290.1 45.833 528 208 18 19 501 45 539 1.26e-101 316
Msa1200140 AT5G45290.2 45.747 529 208 19 19 501 45 540 6.19e-100 311
Msa1200140 AT3G05200.1 44.595 74 37 3 428 498 102 174 6.44e-13 70.9
Msa1200140 AT1G21960.1 50.000 70 34 1 425 494 131 199 6.62e-13 68.2
Msa1200140 AT1G35625.1 34.286 70 46 0 427 496 208 277 9.81e-13 69.7
Msa1200140 AT4G11680.1 62.745 51 17 2 447 497 334 382 2.46e-12 68.9
Msa1200140 AT5G05280.1 47.692 65 30 3 431 494 94 155 3.05e-12 65.5
Msa1200140 AT1G35630.1 34.286 70 46 0 427 496 208 277 4.90e-12 67.4
Msa1200140 AT5G01880.1 61.702 47 16 2 449 494 102 147 4.99e-12 64.7
Msa1200140 AT1G71980.1 36.923 65 41 0 430 494 210 274 5.90e-12 68.2
Msa1200140 AT5G52155.1 46.667 60 31 1 438 497 123 181 7.74e-12 64.7
Msa1200140 AT4G11680.2 61.702 47 17 1 451 497 366 411 9.11e-12 67.4
Msa1200140 AT3G19950.1 37.037 81 47 3 422 501 187 264 1.02e-11 66.6
Msa1200140 AT3G19950.2 37.037 81 47 3 422 501 245 322 1.06e-11 67.0
Msa1200140 AT3G19950.3 37.037 81 47 3 422 501 245 322 1.06e-11 67.0
Msa1200140 AT3G16720.1 42.857 70 36 3 429 497 98 164 1.07e-11 66.2
Msa1200140 AT2G20030.1 42.466 73 39 3 430 501 103 173 1.59e-11 66.6
Msa1200140 AT2G35000.1 35.632 87 48 4 431 510 112 197 1.71e-11 66.2
Msa1200140 AT5G66160.1 39.706 68 40 1 430 497 211 277 1.78e-11 65.9
Msa1200140 AT3G19910.1 37.838 74 45 1 429 502 265 337 1.81e-11 65.9
Msa1200140 AT1G23980.1 42.029 69 37 3 430 497 123 189 1.85e-11 66.2
Msa1200140 AT1G12760.1 55.769 52 21 2 446 497 348 397 1.86e-11 66.6
Msa1200140 AT5G05810.1 42.857 70 37 3 429 497 124 191 1.94e-11 66.2
Msa1200140 AT1G12760.2 55.769 52 21 2 446 497 277 326 2.13e-11 65.9
Msa1200140 AT3G10910.1 42.667 75 40 3 431 504 94 166 2.50e-11 63.2
Msa1200140 AT4G09560.1 33.824 68 45 0 427 494 209 276 2.77e-11 66.2
Msa1200140 AT5G66160.2 39.437 71 36 1 434 497 207 277 3.28e-11 64.7
Msa1200140 AT5G06490.1 43.056 72 33 3 430 494 101 171 3.38e-11 63.2
Msa1200140 AT4G38140.1 46.154 65 33 2 444 507 54 117 3.50e-11 61.6
Msa1200140 AT3G61180.1 54.902 51 21 2 447 497 319 367 3.54e-11 65.5
Msa1200140 AT3G61460.1 33.333 111 66 4 387 494 32 137 3.69e-11 62.4
Msa1200140 AT5G52140.1 48.000 50 25 1 448 497 230 278 5.98e-11 63.9
Msa1200140 AT1G53820.1 51.923 52 23 2 447 497 115 165 6.00e-11 64.3
Msa1200140 AT4G26400.2 44.595 74 31 3 422 494 218 282 6.51e-11 64.3
Msa1200140 AT4G26400.1 44.595 74 31 3 422 494 218 282 6.51e-11 64.3
Msa1200140 AT2G01735.1 47.297 74 32 3 424 497 285 351 8.13e-11 64.3
Msa1200140 AT1G26800.1 28.346 127 80 4 371 494 36 154 8.51e-11 62.0
Msa1200140 AT1G20823.1 44.776 67 35 2 429 494 88 153 8.81e-11 62.0
Msa1200140 AT4G17245.1 54.167 48 21 1 451 497 101 148 9.97e-11 60.8

Find 115 sgRNAs with CRISPR-Local

Find 526 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATGCCAAAATTATATTT+TGG 0.117172 8_1:+52472632 None:intergenic
TCTTCTTCGTTCAAGGAAAT+TGG 0.152045 8_1:+52475171 None:intergenic
GTCTCCCCAAAATATAATTT+TGG 0.167309 8_1:-52472638 Msa1200140:three_prime_UTR
CATCCTTCTGTATCTTCTAT+TGG 0.170412 8_1:-52474812 Msa1200140:CDS
TTGTTCTTTACACCTATTCT+AGG 0.204204 8_1:-52472502 Msa1200140:three_prime_UTR
TATTGTCTTGGAACATGTTC+TGG 0.223726 8_1:-52476788 Msa1200140:CDS
GCATTTGACCTTATATTAAT+AGG 0.244877 8_1:+52475655 None:intergenic
CTACTAGTCGATTCCTTTCT+CGG 0.260477 8_1:-52475867 Msa1200140:CDS
ATAGAAAATGATTGAACTTC+TGG 0.276207 8_1:+52472803 None:intergenic
CTCTTGTTGCAGAGGGAAAA+AGG 0.281468 8_1:+52475402 None:intergenic
TAATAAAGCTACCTCAAATA+AGG 0.291964 8_1:+52474949 None:intergenic
AATGAGAGGATGAAAGTAAA+AGG 0.300382 8_1:+52477061 None:intergenic
AGGTCAAATGCCTCAGGATT+AGG 0.313045 8_1:-52475643 Msa1200140:CDS
TGTGATCAGAATAAAGTAAA+TGG 0.330122 8_1:-52476030 Msa1200140:intron
CATACTAGATAGAGGGTATC+TGG 0.338705 8_1:+52475282 None:intergenic
TATATGCCTTGTAGAGTATA+AGG 0.345652 8_1:-52474266 Msa1200140:CDS
GTATTCTTCTTCTTCGTTCA+AGG 0.354262 8_1:+52475164 None:intergenic
AACAATGTGTTGCATTGTTT+TGG 0.364662 8_1:+52477001 None:intergenic
CGTCCAACTCGGAACTTTAG+TGG 0.368904 8_1:-52472882 Msa1200140:CDS
TCCAGACTTAGCATATTTAC+CGG 0.373072 8_1:-52475817 Msa1200140:CDS
ACGATATTCAGAATAATCTA+AGG 0.387524 8_1:-52475366 Msa1200140:CDS
AGTCGATTCCTTTCTCGGTT+TGG 0.394328 8_1:-52475862 Msa1200140:CDS
AAGATAAAACCACGGATTGC+TGG 0.400437 8_1:+52474837 None:intergenic
TCTCGGTTTGGCGTCACTCC+TGG 0.406664 8_1:-52475850 Msa1200140:CDS
AAGATACTCCTATTAATATA+AGG 0.410567 8_1:-52475663 Msa1200140:CDS
CTCTTCAGAGGTTGGGTAGC+CGG 0.412332 8_1:-52475126 Msa1200140:CDS
GGGTTTCATTCTTATTGTCT+TGG 0.416085 8_1:-52476800 Msa1200140:CDS
GTCCGTTCTCTTCAGAGGTT+GGG 0.422816 8_1:-52475133 Msa1200140:CDS
TTTCATATTTATTCTGCAAT+CGG 0.425866 8_1:+52472747 None:intergenic
AAGCTAAGGAGGAGGTTAGT+GGG 0.429925 8_1:-52472701 Msa1200140:three_prime_UTR
AGGTAGGTATCAGGATCTAA+TGG 0.431610 8_1:-52475203 Msa1200140:CDS
AATGACTCCACAACATTGAT+AGG 0.435689 8_1:+52474776 None:intergenic
TTTCCTTGCATCGGTGGCAT+TGG 0.435884 8_1:-52475619 Msa1200140:CDS
AGCTAAGGAGGAGGTTAGTG+GGG 0.436164 8_1:-52472700 Msa1200140:three_prime_UTR
CAGGGTATGCCCACTATGTC+GGG 0.443572 8_1:-52472928 Msa1200140:CDS
AGACAGTGATAATGAGGAAC+AGG 0.446528 8_1:-52476759 Msa1200140:intron
ACCGGTAAATATGCTAAGTC+TGG 0.449805 8_1:+52475816 None:intergenic
ATTGCGAGAAGGTAGGTATC+AGG 0.452326 8_1:-52475212 Msa1200140:CDS
AAAGCTAAGGAGGAGGTTAG+TGG 0.459821 8_1:-52472702 Msa1200140:three_prime_UTR
ATCAAACTGCTACAAGGTCC+TGG 0.462429 8_1:+52475715 None:intergenic
GAGAGATCATGTATCTTGTC+TGG 0.471985 8_1:-52475082 Msa1200140:CDS
GGTCCGTTCTCTTCAGAGGT+TGG 0.473101 8_1:-52475134 Msa1200140:CDS
ATAGAACATGCATAGACAAA+TGG 0.475464 8_1:-52474201 Msa1200140:CDS
CGAGAAAGGAATCGACTAGT+AGG 0.486486 8_1:+52475868 None:intergenic
GAGAGTCTTGTAGAAGATAC+AGG 0.486657 8_1:+52475772 None:intergenic
TTTAGTCGAACTTTAAGTGT+TGG 0.497463 8_1:-52475472 Msa1200140:CDS
CTCCATCCTTATACTCTACA+AGG 0.499147 8_1:+52474260 None:intergenic
GAGTTAGACATACTAGATAG+AGG 0.503213 8_1:+52475274 None:intergenic
GAGTGACGCCAAACCGAGAA+AGG 0.511012 8_1:+52475854 None:intergenic
GAAAGAAAAGAAAGCTAAGG+AGG 0.511133 8_1:-52472712 Msa1200140:three_prime_UTR
ACTAGGAAGAGTAGTTCTAA+AGG 0.516747 8_1:-52476830 Msa1200140:CDS
AGTAGTTCTAAAGGACTGAA+AGG 0.517449 8_1:-52476821 Msa1200140:CDS
GACTTACATGCACCTAGAAT+AGG 0.518767 8_1:+52472490 None:intergenic
GTAGTTCTAAAGGACTGAAA+GGG 0.519615 8_1:-52476820 Msa1200140:CDS
TCCTGCACCTATCAATGTTG+TGG 0.520844 8_1:-52474783 Msa1200140:CDS
GGAGAAAGAAAAGAAAGCTA+AGG 0.521832 8_1:-52472715 Msa1200140:three_prime_UTR
GATGTTACATGTGCTGATAA+TGG 0.524096 8_1:-52476003 Msa1200140:CDS
CACAGGTCCGTTCTCTTCAG+AGG 0.525705 8_1:-52475138 Msa1200140:CDS
ACTTGCAGAAGCCTTATTTG+AGG 0.526249 8_1:-52474960 Msa1200140:intron
ACATTGTTACATACCAATGC+AGG 0.526576 8_1:-52476986 Msa1200140:five_prime_UTR
GTAGCATCTTCTTGATGCTT+AGG 0.527100 8_1:+52474728 None:intergenic
ATAATGAAGCAAACCTGCAT+TGG 0.529599 8_1:+52476973 None:intergenic
ATGCATAGACAAATGGTTGA+AGG 0.530723 8_1:-52474194 Msa1200140:CDS
TCCACAACATTGATAGGTGC+AGG 0.531437 8_1:+52474782 None:intergenic
AGACATTTAGATCGGCGAAA+CGG 0.531768 8_1:-52475526 Msa1200140:CDS
AGTTCTCTCTCTTGTTGCAG+AGG 0.532284 8_1:+52475394 None:intergenic
TTAGATTCTGGAAGATGGGT+CGG 0.533817 8_1:+52476946 None:intergenic
ATGTTAATCAAACTGCTACA+AGG 0.534912 8_1:+52475709 None:intergenic
AATATAAGGTCAAATGCCTC+AGG 0.537504 8_1:-52475649 Msa1200140:CDS
AATGGTTGAAGGAGATTCAC+AGG 0.539284 8_1:-52474183 Msa1200140:intron
AACTTCTCATATAACTTGAC+AGG 0.541026 8_1:+52474752 None:intergenic
CATTGGTGCAAGAGATGAGT+TGG 0.543000 8_1:-52475602 Msa1200140:CDS
GCTAAGGAGGAGGTTAGTGG+GGG 0.545739 8_1:-52472699 Msa1200140:three_prime_UTR
AGGTCGCGATGATCTTGAAC+CGG 0.546926 8_1:+52475798 None:intergenic
AGAAAAGAAAGCTAAGGAGG+AGG 0.550216 8_1:-52472709 Msa1200140:three_prime_UTR
CAATAGAAGATACAGAAGGA+TGG 0.550238 8_1:+52474813 None:intergenic
CTATTAGCACTATGATCTGA+TGG 0.552053 8_1:+52475313 None:intergenic
GAATAATCTAAGGCAAACAT+TGG 0.553467 8_1:-52475356 Msa1200140:CDS
AATAGAAGATACAGAAGGAT+GGG 0.553746 8_1:+52474814 None:intergenic
TTGAACGAAGAAGAAGAATA+CGG 0.557105 8_1:-52475162 Msa1200140:CDS
GTTCTCTCTCTTGTTGCAGA+GGG 0.557680 8_1:+52475395 None:intergenic
TAATCTAAGGCAAACATTGG+AGG 0.566240 8_1:-52475353 Msa1200140:CDS
ATCTCAAGACAGTGATAATG+AGG 0.569153 8_1:-52476765 Msa1200140:CDS
GTTGAGCATAATCTACATCC+AGG 0.571211 8_1:-52475733 Msa1200140:CDS
CTAATAGTAGCAAAGCCACT+AGG 0.571625 8_1:-52476847 Msa1200140:CDS
GCACCAATGCCACCGATGCA+AGG 0.578391 8_1:+52475616 None:intergenic
CATCATTTGAATTAGTGTCA+CGG 0.579541 8_1:+52475020 None:intergenic
CTATGAAATTCATGATTGCA+AGG 0.579951 8_1:+52474220 None:intergenic
AAGAAGAAGAATACGGTCAC+AGG 0.583067 8_1:-52475155 Msa1200140:CDS
TGCCTTGTAGAGTATAAGGA+TGG 0.589618 8_1:-52474262 Msa1200140:CDS
ACAGGGTATGCCCACTATGT+CGG 0.590225 8_1:-52472929 Msa1200140:intron
TAACCACTAAAGTTCCGAGT+TGG 0.590864 8_1:+52472879 None:intergenic
TTTCTGACTCACGTCCAACT+CGG 0.606833 8_1:-52472893 Msa1200140:CDS
ATCAGGATCTAATGGAGCAT+AGG 0.609326 8_1:-52475195 Msa1200140:CDS
CTGAGACTAGACATTTAGAT+CGG 0.612665 8_1:-52475534 Msa1200140:CDS
TTTAGAACTACTCTTCCTAG+TGG 0.613252 8_1:+52476832 None:intergenic
ATGTTGATATTCTAACATAG+AGG 0.615801 8_1:-52472581 Msa1200140:three_prime_UTR
CAGATAATGTTGATCGACGA+AGG 0.627645 8_1:+52475431 None:intergenic
AGTTAGACATACTAGATAGA+GGG 0.630416 8_1:+52475275 None:intergenic
TGAAATTCACCAGCAATCCG+TGG 0.631199 8_1:-52474846 Msa1200140:CDS
CCTCACAATTGCGAGAAGGT+AGG 0.637022 8_1:-52475219 Msa1200140:CDS
AGGGTATGCCCACTATGTCG+GGG 0.645233 8_1:-52472927 Msa1200140:CDS
GATCCAATAGAAGATACAGA+AGG 0.646146 8_1:+52474809 None:intergenic
CTTGTAGAAGATACAGGACA+AGG 0.647587 8_1:+52475778 None:intergenic
TACCCAACCTCTGAAGAGAA+CGG 0.647856 8_1:+52475131 None:intergenic
CAATCTATCTGACTCAGATG+AGG 0.650505 8_1:-52475980 Msa1200140:CDS
GAGACCTCACAATTGCGAGA+AGG 0.664773 8_1:-52475223 Msa1200140:CDS
ACTAATTCAAATGATGACAC+TGG 0.666491 8_1:-52475013 Msa1200140:CDS
CCTACCTTCTCGCAATTGTG+AGG 0.671964 8_1:+52475219 None:intergenic
GCAAGGAAAACCTAATCCTG+AGG 0.674456 8_1:+52475633 None:intergenic
GGGTATGCCCACTATGTCGG+GGG 0.682605 8_1:-52472926 Msa1200140:CDS
AATGGGTGAAAGAAAATGAG+AGG 0.694538 8_1:+52477047 None:intergenic
TTAACATAAATGAAACAGCA+CGG 0.696321 8_1:-52475693 Msa1200140:CDS
CTAAGGAGGAGGTTAGTGGG+GGG 0.732515 8_1:-52472698 Msa1200140:three_prime_UTR
AGGATGGGAAGATAAAACCA+CGG 0.736130 8_1:+52474829 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATATGAAAAATATAGT+TGG - chr8_1:52476899-52476918 Msa1200140:five_prime_UTR 10.0%
!! ATAAATATGAAAAATATAGT+TGG - chr8_1:52476899-52476918 Msa1200140:five_prime_UTR 10.0%
!! CATTAACATTATGAAAATTA+AGG + chr8_1:52472907-52472926 None:intergenic 15.0%
!!! CTTTTGTACTTATTTTAATT+AGG - chr8_1:52474759-52474778 Msa1200140:CDS 15.0%
!! AATTCAATACAATAGTAAAA+TGG + chr8_1:52475568-52475587 None:intergenic 15.0%
!!! GTTAAAATTTGCTTATAATT+TGG - chr8_1:52475756-52475775 Msa1200140:CDS 15.0%
!! ACAGAAAATAAGTATTTAAT+TGG - chr8_1:52475838-52475857 Msa1200140:CDS 15.0%
!! TACTAAAAACACTATAATAA+TGG - chr8_1:52475910-52475929 Msa1200140:CDS 15.0%
!!! TTGAATTTAATTTTGAAAGA+GGG + chr8_1:52476386-52476405 None:intergenic 15.0%
!!! ATATGCCAAAATTATATTTT+GGG + chr8_1:52477005-52477024 None:intergenic 15.0%
!!! AATATGCCAAAATTATATTT+TGG + chr8_1:52477006-52477025 None:intergenic 15.0%
!! CATTAACATTATGAAAATTA+AGG + chr8_1:52472907-52472926 None:intergenic 15.0%
!!! CTTTTGTACTTATTTTAATT+AGG - chr8_1:52474759-52474778 Msa1200140:CDS 15.0%
!! AATTCAATACAATAGTAAAA+TGG + chr8_1:52475568-52475587 None:intergenic 15.0%
!!! GTTAAAATTTGCTTATAATT+TGG - chr8_1:52475756-52475775 Msa1200140:CDS 15.0%
!! ACAGAAAATAAGTATTTAAT+TGG - chr8_1:52475838-52475857 Msa1200140:CDS 15.0%
!! TACTAAAAACACTATAATAA+TGG - chr8_1:52475910-52475929 Msa1200140:CDS 15.0%
!!! TTGAATTTAATTTTGAAAGA+GGG + chr8_1:52476386-52476405 None:intergenic 15.0%
!!! ATATGCCAAAATTATATTTT+GGG + chr8_1:52477005-52477024 None:intergenic 15.0%
!!! AATATGCCAAAATTATATTT+TGG + chr8_1:52477006-52477025 None:intergenic 15.0%
!!! GTTTTGTTTTTTAAGGTATT+TGG - chr8_1:52472736-52472755 Msa1200140:three_prime_UTR 20.0%
!!! ATTTGATAACTAAAAAGAGT+TGG - chr8_1:52473270-52473289 Msa1200140:intron 20.0%
!! AAGCATATAATTTACTATTC+AGG + chr8_1:52473346-52473365 None:intergenic 20.0%
!! TGAATAGTAAATTATATGCT+TGG - chr8_1:52473345-52473364 Msa1200140:intron 20.0%
!!! CTTTATTTCTTATCAAATAC+TGG - chr8_1:52473389-52473408 Msa1200140:intron 20.0%
!! AAGATACTCCTATTAATATA+AGG - chr8_1:52473972-52473991 Msa1200140:intron 20.0%
!!! ATAGTTTTGATTACTAAACA+TGG + chr8_1:52474386-52474405 None:intergenic 20.0%
!!! TACTTATTTTAATTAGGTTC+TGG - chr8_1:52474765-52474784 Msa1200140:CDS 20.0%
!!! AATATTTTGATAAAAGCTAG+TGG + chr8_1:52475122-52475141 None:intergenic 20.0%
!!! AAACTTTTCAACTTTCAAAA+AGG + chr8_1:52475145-52475164 None:intergenic 20.0%
!!! AAAGTTGAAAAGTTTTATCA+TGG - chr8_1:52475150-52475169 Msa1200140:CDS 20.0%
!! CTAAAGATCAGAAAAATAAA+AGG + chr8_1:52475264-52475283 None:intergenic 20.0%
!!! ATTTGAAACTTTCATTTAAC+AGG + chr8_1:52475512-52475531 None:intergenic 20.0%
!! TTGATCATTGTCATATATTA+AGG + chr8_1:52475969-52475988 None:intergenic 20.0%
!!! CTTGAATTTAATTTTGAAAG+AGG + chr8_1:52476387-52476406 None:intergenic 20.0%
!! TGAAATAGTTTGGTTATAAA+TGG + chr8_1:52476440-52476459 None:intergenic 20.0%
!!! GGTATTTTCATTATTGTAAA+TGG - chr8_1:52476856-52476875 Msa1200140:CDS 20.0%
!! TTTCATATTTATTCTGCAAT+CGG + chr8_1:52476891-52476910 None:intergenic 20.0%
!!! TATGCCAAAATTATATTTTG+GGG + chr8_1:52477004-52477023 None:intergenic 20.0%
!!! GTTTTGTTTTTTAAGGTATT+TGG - chr8_1:52472736-52472755 Msa1200140:three_prime_UTR 20.0%
!!! ATTTGATAACTAAAAAGAGT+TGG - chr8_1:52473270-52473289 Msa1200140:intron 20.0%
!! AAGCATATAATTTACTATTC+AGG + chr8_1:52473346-52473365 None:intergenic 20.0%
!! TGAATAGTAAATTATATGCT+TGG - chr8_1:52473345-52473364 Msa1200140:intron 20.0%
!!! CTTTATTTCTTATCAAATAC+TGG - chr8_1:52473389-52473408 Msa1200140:intron 20.0%
!! AAGATACTCCTATTAATATA+AGG - chr8_1:52473972-52473991 Msa1200140:intron 20.0%
!!! ATAGTTTTGATTACTAAACA+TGG + chr8_1:52474386-52474405 None:intergenic 20.0%
!!! TACTTATTTTAATTAGGTTC+TGG - chr8_1:52474765-52474784 Msa1200140:CDS 20.0%
!!! AATATTTTGATAAAAGCTAG+TGG + chr8_1:52475122-52475141 None:intergenic 20.0%
!!! AAACTTTTCAACTTTCAAAA+AGG + chr8_1:52475145-52475164 None:intergenic 20.0%
!!! AAAGTTGAAAAGTTTTATCA+TGG - chr8_1:52475150-52475169 Msa1200140:CDS 20.0%
!! CTAAAGATCAGAAAAATAAA+AGG + chr8_1:52475264-52475283 None:intergenic 20.0%
!!! ATTTGAAACTTTCATTTAAC+AGG + chr8_1:52475512-52475531 None:intergenic 20.0%
!! TTGATCATTGTCATATATTA+AGG + chr8_1:52475969-52475988 None:intergenic 20.0%
!!! CTTGAATTTAATTTTGAAAG+AGG + chr8_1:52476387-52476406 None:intergenic 20.0%
!! TGAAATAGTTTGGTTATAAA+TGG + chr8_1:52476440-52476459 None:intergenic 20.0%
!!! GGTATTTTCATTATTGTAAA+TGG - chr8_1:52476856-52476875 Msa1200140:CDS 20.0%
!! TTTCATATTTATTCTGCAAT+CGG + chr8_1:52476891-52476910 None:intergenic 20.0%
!!! TATGCCAAAATTATATTTTG+GGG + chr8_1:52477004-52477023 None:intergenic 20.0%
!!! TGAAGTTTTATGGTTGAAAT+GGG + chr8_1:52472608-52472627 None:intergenic 25.0%
!!! ATGAAGTTTTATGGTTGAAA+TGG + chr8_1:52472609-52472628 None:intergenic 25.0%
!! TTGGCTAAAATGAAGTTTTA+TGG + chr8_1:52472618-52472637 None:intergenic 25.0%
!!! TTTTTTAGATTCTGGAAGAT+GGG + chr8_1:52472696-52472715 None:intergenic 25.0%
!!! AAAGACAGCATTTTTATTTC+TGG - chr8_1:52472713-52472732 Msa1200140:three_prime_UTR 25.0%
!!! AAGACAGCATTTTTATTTCT+GGG - chr8_1:52472714-52472733 Msa1200140:three_prime_UTR 25.0%
!!! TTTCTGGGTTTTGTTTTTTA+AGG - chr8_1:52472729-52472748 Msa1200140:three_prime_UTR 25.0%
! AATACTCCTAAAAGATAAGT+AGG - chr8_1:52473177-52473196 Msa1200140:intron 25.0%
!! CTTAAACCTACTTATCTTTT+AGG + chr8_1:52473186-52473205 None:intergenic 25.0%
!!! ACACTCACTTATTTTTTAGA+AGG - chr8_1:52473236-52473255 Msa1200140:intron 25.0%
! TACTTTACTACTATCTCTAA+GGG + chr8_1:52473482-52473501 None:intergenic 25.0%
! TTACTTTACTACTATCTCTA+AGG + chr8_1:52473483-52473502 None:intergenic 25.0%
!!! TAACGACAATTTTGTTTGAT+TGG - chr8_1:52473541-52473560 Msa1200140:intron 25.0%
!!! AACGACAATTTTGTTTGATT+GGG - chr8_1:52473542-52473561 Msa1200140:intron 25.0%
! TGTGATCAGAATAAAGTAAA+TGG - chr8_1:52473605-52473624 Msa1200140:intron 25.0%
! TTAACATAAATGAAACAGCA+CGG - chr8_1:52473942-52473961 Msa1200140:intron 25.0%
! GCATTTGACCTTATATTAAT+AGG + chr8_1:52473983-52474002 None:intergenic 25.0%
!! ATTTTCTCAGAGAATTCAAA+CGG - chr8_1:52474066-52474085 Msa1200140:intron 25.0%
! ACGATATTCAGAATAATCTA+AGG - chr8_1:52474269-52474288 Msa1200140:CDS 25.0%
! TAATAAAGCTACCTCAAATA+AGG + chr8_1:52474689-52474708 None:intergenic 25.0%
! TCTTATCAGCTAAAATACAA+TGG - chr8_1:52474996-52475015 Msa1200140:CDS 25.0%
!! CAATGCAATTGATAACAATA+GGG + chr8_1:52475182-52475201 None:intergenic 25.0%
!! ACAATGCAATTGATAACAAT+AGG + chr8_1:52475183-52475202 None:intergenic 25.0%
! ATGTACACTGATGAATAAAT+AGG + chr8_1:52475228-52475247 None:intergenic 25.0%
!!! TTATTTTTCTGATCTTTAGC+TGG - chr8_1:52475265-52475284 Msa1200140:CDS 25.0%
! AGAAATTATAAGGTTAGCAT+TGG + chr8_1:52475340-52475359 None:intergenic 25.0%
! ATAGCATCTGAGAAATTATA+AGG + chr8_1:52475350-52475369 None:intergenic 25.0%
! AAAATGGCATGATGATTAAA+TGG + chr8_1:52475552-52475571 None:intergenic 25.0%
! AACTTAATCAAATTGCTGTA+GGG + chr8_1:52475725-52475744 None:intergenic 25.0%
! TAACTTAATCAAATTGCTGT+AGG + chr8_1:52475726-52475745 None:intergenic 25.0%
! TACAGCAATTTGATTAAGTT+AGG - chr8_1:52475725-52475744 Msa1200140:CDS 25.0%
! CGAATATAAACAAATCATAG+TGG + chr8_1:52475783-52475802 None:intergenic 25.0%
! TGGAACTTGGAATATTTAAT+TGG - chr8_1:52475811-52475830 Msa1200140:CDS 25.0%
! ATATGTATGCTATAAATCTC+TGG + chr8_1:52476162-52476181 None:intergenic 25.0%
!! AGCATACATATTTTCAATCA+TGG - chr8_1:52476171-52476190 Msa1200140:intron 25.0%
!! GCATACATATTTTCAATCAT+GGG - chr8_1:52476172-52476191 Msa1200140:intron 25.0%
! ATGTCTCGTCTAATAATATT+GGG + chr8_1:52476493-52476512 None:intergenic 25.0%
! AATGTCTCGTCTAATAATAT+TGG + chr8_1:52476494-52476513 None:intergenic 25.0%
!! AAACACTTGATCTTTTATGT+GGG - chr8_1:52476803-52476822 Msa1200140:CDS 25.0%
! ATAGAAAATGATTGAACTTC+TGG + chr8_1:52476835-52476854 None:intergenic 25.0%
!! GAAGTTCAATCATTTTCTAT+TGG - chr8_1:52476835-52476854 Msa1200140:CDS 25.0%
! ATGTTGATATTCTAACATAG+AGG - chr8_1:52477054-52477073 Msa1200140:five_prime_UTR 25.0%
!!! TGAAGTTTTATGGTTGAAAT+GGG + chr8_1:52472608-52472627 None:intergenic 25.0%
!!! ATGAAGTTTTATGGTTGAAA+TGG + chr8_1:52472609-52472628 None:intergenic 25.0%
!! TTGGCTAAAATGAAGTTTTA+TGG + chr8_1:52472618-52472637 None:intergenic 25.0%
!!! TTTTTTAGATTCTGGAAGAT+GGG + chr8_1:52472696-52472715 None:intergenic 25.0%
!!! AAAGACAGCATTTTTATTTC+TGG - chr8_1:52472713-52472732 Msa1200140:three_prime_UTR 25.0%
!!! AAGACAGCATTTTTATTTCT+GGG - chr8_1:52472714-52472733 Msa1200140:three_prime_UTR 25.0%
!!! TTTCTGGGTTTTGTTTTTTA+AGG - chr8_1:52472729-52472748 Msa1200140:three_prime_UTR 25.0%
! AATACTCCTAAAAGATAAGT+AGG - chr8_1:52473177-52473196 Msa1200140:intron 25.0%
!! CTTAAACCTACTTATCTTTT+AGG + chr8_1:52473186-52473205 None:intergenic 25.0%
!!! ACACTCACTTATTTTTTAGA+AGG - chr8_1:52473236-52473255 Msa1200140:intron 25.0%
! TACTTTACTACTATCTCTAA+GGG + chr8_1:52473482-52473501 None:intergenic 25.0%
! TTACTTTACTACTATCTCTA+AGG + chr8_1:52473483-52473502 None:intergenic 25.0%
!!! TAACGACAATTTTGTTTGAT+TGG - chr8_1:52473541-52473560 Msa1200140:intron 25.0%
!!! AACGACAATTTTGTTTGATT+GGG - chr8_1:52473542-52473561 Msa1200140:intron 25.0%
! TGTGATCAGAATAAAGTAAA+TGG - chr8_1:52473605-52473624 Msa1200140:intron 25.0%
! TTAACATAAATGAAACAGCA+CGG - chr8_1:52473942-52473961 Msa1200140:intron 25.0%
! GCATTTGACCTTATATTAAT+AGG + chr8_1:52473983-52474002 None:intergenic 25.0%
!! ATTTTCTCAGAGAATTCAAA+CGG - chr8_1:52474066-52474085 Msa1200140:intron 25.0%
! ACGATATTCAGAATAATCTA+AGG - chr8_1:52474269-52474288 Msa1200140:CDS 25.0%
! TAATAAAGCTACCTCAAATA+AGG + chr8_1:52474689-52474708 None:intergenic 25.0%
! TCTTATCAGCTAAAATACAA+TGG - chr8_1:52474996-52475015 Msa1200140:CDS 25.0%
!! CAATGCAATTGATAACAATA+GGG + chr8_1:52475182-52475201 None:intergenic 25.0%
!! ACAATGCAATTGATAACAAT+AGG + chr8_1:52475183-52475202 None:intergenic 25.0%
! ATGTACACTGATGAATAAAT+AGG + chr8_1:52475228-52475247 None:intergenic 25.0%
!!! TTATTTTTCTGATCTTTAGC+TGG - chr8_1:52475265-52475284 Msa1200140:CDS 25.0%
! AGAAATTATAAGGTTAGCAT+TGG + chr8_1:52475340-52475359 None:intergenic 25.0%
! ATAGCATCTGAGAAATTATA+AGG + chr8_1:52475350-52475369 None:intergenic 25.0%
! AAAATGGCATGATGATTAAA+TGG + chr8_1:52475552-52475571 None:intergenic 25.0%
! AACTTAATCAAATTGCTGTA+GGG + chr8_1:52475725-52475744 None:intergenic 25.0%
! TAACTTAATCAAATTGCTGT+AGG + chr8_1:52475726-52475745 None:intergenic 25.0%
! TACAGCAATTTGATTAAGTT+AGG - chr8_1:52475725-52475744 Msa1200140:CDS 25.0%
! CGAATATAAACAAATCATAG+TGG + chr8_1:52475783-52475802 None:intergenic 25.0%
! TGGAACTTGGAATATTTAAT+TGG - chr8_1:52475811-52475830 Msa1200140:CDS 25.0%
! ATATGTATGCTATAAATCTC+TGG + chr8_1:52476162-52476181 None:intergenic 25.0%
!! AGCATACATATTTTCAATCA+TGG - chr8_1:52476171-52476190 Msa1200140:intron 25.0%
!! GCATACATATTTTCAATCAT+GGG - chr8_1:52476172-52476191 Msa1200140:intron 25.0%
! ATGTCTCGTCTAATAATATT+GGG + chr8_1:52476493-52476512 None:intergenic 25.0%
! AATGTCTCGTCTAATAATAT+TGG + chr8_1:52476494-52476513 None:intergenic 25.0%
!! AAACACTTGATCTTTTATGT+GGG - chr8_1:52476803-52476822 Msa1200140:CDS 25.0%
! ATAGAAAATGATTGAACTTC+TGG + chr8_1:52476835-52476854 None:intergenic 25.0%
!! GAAGTTCAATCATTTTCTAT+TGG - chr8_1:52476835-52476854 Msa1200140:CDS 25.0%
! ATGTTGATATTCTAACATAG+AGG - chr8_1:52477054-52477073 Msa1200140:five_prime_UTR 25.0%
! AAAAGGTCGCATTTTTATGT+TGG + chr8_1:52472560-52472579 None:intergenic 30.0%
AATGAGAGGATGAAAGTAAA+AGG + chr8_1:52472577-52472596 None:intergenic 30.0%
! AACAATGTGTTGCATTGTTT+TGG + chr8_1:52472637-52472656 None:intergenic 30.0%
!!! CTTTTTTAGATTCTGGAAGA+TGG + chr8_1:52472697-52472716 None:intergenic 30.0%
!!! ATGCTGTCTTTTTTAGATTC+TGG + chr8_1:52472704-52472723 None:intergenic 30.0%
!!! TTGGAAGTTTTTTCTTGTTG+TGG - chr8_1:52472755-52472774 Msa1200140:three_prime_UTR 30.0%
!!! TGGAAGTTTTTTCTTGTTGT+GGG - chr8_1:52472756-52472775 Msa1200140:three_prime_UTR 30.0%
!!! AGGATTTTGATGTTACTTTC+TGG - chr8_1:52473020-52473039 Msa1200140:intron 30.0%
AAGTAGTTAAATACACCTTG+AGG - chr8_1:52473141-52473160 Msa1200140:intron 30.0%
! TTTAAGTTAGCAGCTTCTAT+AGG - chr8_1:52473200-52473219 Msa1200140:intron 30.0%
ACTTTACTACTATCTCTAAG+GGG + chr8_1:52473481-52473500 None:intergenic 30.0%
TCATATTCAAATGGCACTAA+TGG + chr8_1:52473506-52473525 None:intergenic 30.0%
! AGGTGAAATCAAAGTCTTTT+AGG - chr8_1:52473675-52473694 Msa1200140:intron 30.0%
!! GAAATCAAAGTCTTTTAGGA+AGG - chr8_1:52473679-52473698 Msa1200140:intron 30.0%
ATGTTAATCAAACTGCTACA+AGG + chr8_1:52473929-52473948 None:intergenic 30.0%
TTTAGTCGAACTTTAAGTGT+TGG - chr8_1:52474163-52474182 Msa1200140:intron 30.0%
! GAATAATCTAAGGCAAACAT+TGG - chr8_1:52474279-52474298 Msa1200140:intron 30.0%
AGTTAGACATACTAGATAGA+GGG + chr8_1:52474363-52474382 None:intergenic 30.0%
TTGAACGAAGAAGAAGAATA+CGG - chr8_1:52474473-52474492 Msa1200140:intron 30.0%
CATCATTTGAATTAGTGTCA+CGG + chr8_1:52474618-52474637 None:intergenic 30.0%
ACTAATTCAAATGATGACAC+TGG - chr8_1:52474622-52474641 Msa1200140:intron 30.0%
AATAGAAGATACAGAAGGAT+GGG + chr8_1:52474824-52474843 None:intergenic 30.0%
AACTTCTCATATAACTTGAC+AGG + chr8_1:52474886-52474905 None:intergenic 30.0%
TATATGCCTTGTAGAGTATA+AGG - chr8_1:52475369-52475388 Msa1200140:CDS 30.0%
CTATGAAATTCATGATTGCA+AGG + chr8_1:52475418-52475437 None:intergenic 30.0%
ATAGAACATGCATAGACAAA+TGG - chr8_1:52475434-52475453 Msa1200140:CDS 30.0%
AACAGGATAGTAAACAAGAA+GGG + chr8_1:52475495-52475514 None:intergenic 30.0%
TAACAGGATAGTAAACAAGA+AGG + chr8_1:52475496-52475515 None:intergenic 30.0%
TTGAATTAAGCATATTTCGC+TGG - chr8_1:52475581-52475600 Msa1200140:CDS 30.0%
AGCAATTTGATTAAGTTAGG+TGG - chr8_1:52475728-52475747 Msa1200140:CDS 30.0%
GCAATTTGATTAAGTTAGGT+GGG - chr8_1:52475729-52475748 Msa1200140:CDS 30.0%
CAATTTGATTAAGTTAGGTG+GGG - chr8_1:52475730-52475749 Msa1200140:CDS 30.0%
! TGTTTATATTCGAGTCTTGT+TGG - chr8_1:52475791-52475810 Msa1200140:CDS 30.0%
TAGTACAAATAATGCAGAAC+TGG + chr8_1:52475895-52475914 None:intergenic 30.0%
ATATATTAAGGTGCATGACA+TGG + chr8_1:52475957-52475976 None:intergenic 30.0%
! TCTTTTGTATTGGAAGGAAA+TGG + chr8_1:52476102-52476121 None:intergenic 30.0%
!! ATGTTTGAGGTCTTTTGTAT+TGG + chr8_1:52476112-52476131 None:intergenic 30.0%
AGGTAATATGGTTATGTTTG+AGG + chr8_1:52476125-52476144 None:intergenic 30.0%
TTTCATCTCGTTTGAATATC+TGG - chr8_1:52476296-52476315 Msa1200140:intron 30.0%
AAGAATCCCAATATCATTAG+AGG + chr8_1:52476554-52476573 None:intergenic 30.0%
! AAAACGCGACATTCTTTTTA+AGG + chr8_1:52476579-52476598 None:intergenic 30.0%
TAACCTCTTCAATTATACAC+AGG - chr8_1:52476688-52476707 Msa1200140:intron 30.0%
AACCTCTTCAATTATACACA+GGG - chr8_1:52476689-52476708 Msa1200140:intron 30.0%
! GAAACACTTGATCTTTTATG+TGG - chr8_1:52476802-52476821 Msa1200140:CDS 30.0%
! AACACTTGATCTTTTATGTG+GGG - chr8_1:52476804-52476823 Msa1200140:CDS 30.0%
! GTCTCCCCAAAATATAATTT+TGG - chr8_1:52476997-52477016 Msa1200140:five_prime_UTR 30.0%
TTGTTCTTTACACCTATTCT+AGG - chr8_1:52477133-52477152 Msa1200140:five_prime_UTR 30.0%
! AAAAGGTCGCATTTTTATGT+TGG + chr8_1:52472560-52472579 None:intergenic 30.0%
AATGAGAGGATGAAAGTAAA+AGG + chr8_1:52472577-52472596 None:intergenic 30.0%
! AACAATGTGTTGCATTGTTT+TGG + chr8_1:52472637-52472656 None:intergenic 30.0%
!!! CTTTTTTAGATTCTGGAAGA+TGG + chr8_1:52472697-52472716 None:intergenic 30.0%
!!! ATGCTGTCTTTTTTAGATTC+TGG + chr8_1:52472704-52472723 None:intergenic 30.0%
!!! TTGGAAGTTTTTTCTTGTTG+TGG - chr8_1:52472755-52472774 Msa1200140:three_prime_UTR 30.0%
!!! TGGAAGTTTTTTCTTGTTGT+GGG - chr8_1:52472756-52472775 Msa1200140:three_prime_UTR 30.0%
!!! AGGATTTTGATGTTACTTTC+TGG - chr8_1:52473020-52473039 Msa1200140:intron 30.0%
AAGTAGTTAAATACACCTTG+AGG - chr8_1:52473141-52473160 Msa1200140:intron 30.0%
! TTTAAGTTAGCAGCTTCTAT+AGG - chr8_1:52473200-52473219 Msa1200140:intron 30.0%
ACTTTACTACTATCTCTAAG+GGG + chr8_1:52473481-52473500 None:intergenic 30.0%
TCATATTCAAATGGCACTAA+TGG + chr8_1:52473506-52473525 None:intergenic 30.0%
! AGGTGAAATCAAAGTCTTTT+AGG - chr8_1:52473675-52473694 Msa1200140:intron 30.0%
!! GAAATCAAAGTCTTTTAGGA+AGG - chr8_1:52473679-52473698 Msa1200140:intron 30.0%
ATGTTAATCAAACTGCTACA+AGG + chr8_1:52473929-52473948 None:intergenic 30.0%
TTTAGTCGAACTTTAAGTGT+TGG - chr8_1:52474163-52474182 Msa1200140:intron 30.0%
! GAATAATCTAAGGCAAACAT+TGG - chr8_1:52474279-52474298 Msa1200140:intron 30.0%
AGTTAGACATACTAGATAGA+GGG + chr8_1:52474363-52474382 None:intergenic 30.0%
TTGAACGAAGAAGAAGAATA+CGG - chr8_1:52474473-52474492 Msa1200140:intron 30.0%
CATCATTTGAATTAGTGTCA+CGG + chr8_1:52474618-52474637 None:intergenic 30.0%
ACTAATTCAAATGATGACAC+TGG - chr8_1:52474622-52474641 Msa1200140:intron 30.0%
AATAGAAGATACAGAAGGAT+GGG + chr8_1:52474824-52474843 None:intergenic 30.0%
AACTTCTCATATAACTTGAC+AGG + chr8_1:52474886-52474905 None:intergenic 30.0%
TATATGCCTTGTAGAGTATA+AGG - chr8_1:52475369-52475388 Msa1200140:CDS 30.0%
CTATGAAATTCATGATTGCA+AGG + chr8_1:52475418-52475437 None:intergenic 30.0%
ATAGAACATGCATAGACAAA+TGG - chr8_1:52475434-52475453 Msa1200140:CDS 30.0%
AACAGGATAGTAAACAAGAA+GGG + chr8_1:52475495-52475514 None:intergenic 30.0%
TAACAGGATAGTAAACAAGA+AGG + chr8_1:52475496-52475515 None:intergenic 30.0%
TTGAATTAAGCATATTTCGC+TGG - chr8_1:52475581-52475600 Msa1200140:CDS 30.0%
AGCAATTTGATTAAGTTAGG+TGG - chr8_1:52475728-52475747 Msa1200140:CDS 30.0%
GCAATTTGATTAAGTTAGGT+GGG - chr8_1:52475729-52475748 Msa1200140:CDS 30.0%
CAATTTGATTAAGTTAGGTG+GGG - chr8_1:52475730-52475749 Msa1200140:CDS 30.0%
! TGTTTATATTCGAGTCTTGT+TGG - chr8_1:52475791-52475810 Msa1200140:CDS 30.0%
TAGTACAAATAATGCAGAAC+TGG + chr8_1:52475895-52475914 None:intergenic 30.0%
ATATATTAAGGTGCATGACA+TGG + chr8_1:52475957-52475976 None:intergenic 30.0%
! TCTTTTGTATTGGAAGGAAA+TGG + chr8_1:52476102-52476121 None:intergenic 30.0%
!! ATGTTTGAGGTCTTTTGTAT+TGG + chr8_1:52476112-52476131 None:intergenic 30.0%
AGGTAATATGGTTATGTTTG+AGG + chr8_1:52476125-52476144 None:intergenic 30.0%
TTTCATCTCGTTTGAATATC+TGG - chr8_1:52476296-52476315 Msa1200140:intron 30.0%
AAGAATCCCAATATCATTAG+AGG + chr8_1:52476554-52476573 None:intergenic 30.0%
! AAAACGCGACATTCTTTTTA+AGG + chr8_1:52476579-52476598 None:intergenic 30.0%
TAACCTCTTCAATTATACAC+AGG - chr8_1:52476688-52476707 Msa1200140:intron 30.0%
AACCTCTTCAATTATACACA+GGG - chr8_1:52476689-52476708 Msa1200140:intron 30.0%
! GAAACACTTGATCTTTTATG+TGG - chr8_1:52476802-52476821 Msa1200140:CDS 30.0%
! AACACTTGATCTTTTATGTG+GGG - chr8_1:52476804-52476823 Msa1200140:CDS 30.0%
! GTCTCCCCAAAATATAATTT+TGG - chr8_1:52476997-52477016 Msa1200140:five_prime_UTR 30.0%
TTGTTCTTTACACCTATTCT+AGG - chr8_1:52477133-52477152 Msa1200140:five_prime_UTR 30.0%
AATGGGTGAAAGAAAATGAG+AGG + chr8_1:52472591-52472610 None:intergenic 35.0%
ACATTGTTACATACCAATGC+AGG - chr8_1:52472649-52472668 Msa1200140:three_prime_UTR 35.0%
ATAATGAAGCAAACCTGCAT+TGG + chr8_1:52472665-52472684 None:intergenic 35.0%
!!! TTTTTTCTTGTTGTGGGTCA+TGG - chr8_1:52472762-52472781 Msa1200140:three_prime_UTR 35.0%
!! TTTTTCTTGTTGTGGGTCAT+GGG - chr8_1:52472763-52472782 Msa1200140:three_prime_UTR 35.0%
! TTTAGAACTACTCTTCCTAG+TGG + chr8_1:52472806-52472825 None:intergenic 35.0%
!! ACTAGGAAGAGTAGTTCTAA+AGG - chr8_1:52472805-52472824 Msa1200140:three_prime_UTR 35.0%
!! AGTAGTTCTAAAGGACTGAA+AGG - chr8_1:52472814-52472833 Msa1200140:three_prime_UTR 35.0%
!! GTAGTTCTAAAGGACTGAAA+GGG - chr8_1:52472815-52472834 Msa1200140:three_prime_UTR 35.0%
GGGTTTCATTCTTATTGTCT+TGG - chr8_1:52472835-52472854 Msa1200140:three_prime_UTR 35.0%
TATTGTCTTGGAACATGTTC+TGG - chr8_1:52472847-52472866 Msa1200140:three_prime_UTR 35.0%
! ATCTCAAGACAGTGATAATG+AGG - chr8_1:52472870-52472889 Msa1200140:exon 35.0%
GTAACATCAAAATCCTTGAC+AGG + chr8_1:52473016-52473035 None:intergenic 35.0%
! AGCTTCTATAGGAATTTGCT+AGG - chr8_1:52473211-52473230 Msa1200140:intron 35.0%
TTATCAAATACTGGTCCATG+AGG - chr8_1:52473398-52473417 Msa1200140:intron 35.0%
GACAGTCAGTCATATTCAAA+TGG + chr8_1:52473515-52473534 None:intergenic 35.0%
CCACATAATGAGTCACAATT+AGG + chr8_1:52473583-52473602 None:intergenic 35.0%
CCTAATTGTGACTCATTATG+TGG - chr8_1:52473580-52473599 Msa1200140:intron 35.0%
! GATGTTACATGTGCTGATAA+TGG - chr8_1:52473632-52473651 Msa1200140:intron 35.0%
!! TCTTTTAGGAAGGTTAAAGC+TGG - chr8_1:52473689-52473708 Msa1200140:intron 35.0%
TCCAGACTTAGCATATTTAC+CGG - chr8_1:52473818-52473837 Msa1200140:intron 35.0%
AATATAAGGTCAAATGCCTC+AGG - chr8_1:52473986-52474005 Msa1200140:intron 35.0%
CTGAGACTAGACATTTAGAT+CGG - chr8_1:52474101-52474120 Msa1200140:intron 35.0%
! TAATCTAAGGCAAACATTGG+AGG - chr8_1:52474282-52474301 Msa1200140:intron 35.0%
CTATTAGCACTATGATCTGA+TGG + chr8_1:52474325-52474344 None:intergenic 35.0%
GAGTTAGACATACTAGATAG+AGG + chr8_1:52474364-52474383 None:intergenic 35.0%
TCTTCTTCGTTCAAGGAAAT+TGG + chr8_1:52474467-52474486 None:intergenic 35.0%
GTATTCTTCTTCTTCGTTCA+AGG + chr8_1:52474474-52474493 None:intergenic 35.0%
!! GTGCAGATTGATTTTCATAC+CGG + chr8_1:52474531-52474550 None:intergenic 35.0%
CAATAGAAGATACAGAAGGA+TGG + chr8_1:52474825-52474844 None:intergenic 35.0%
CATCCTTCTGTATCTTCTAT+TGG - chr8_1:52474823-52474842 Msa1200140:CDS 35.0%
GATCCAATAGAAGATACAGA+AGG + chr8_1:52474829-52474848 None:intergenic 35.0%
AATGACTCCACAACATTGAT+AGG + chr8_1:52474862-52474881 None:intergenic 35.0%
! TATTTGAGTTTACCGCTGTT+TGG - chr8_1:52474938-52474957 Msa1200140:intron 35.0%
AGTTTAAATCGTCCAAACAG+CGG + chr8_1:52474953-52474972 None:intergenic 35.0%
TCAGCTAAAATACAATGGAG+TGG - chr8_1:52475001-52475020 Msa1200140:CDS 35.0%
TCAGTGTACATGTATGTTTG+CGG - chr8_1:52475237-52475256 Msa1200140:CDS 35.0%
ATGCATAGACAAATGGTTGA+AGG - chr8_1:52475441-52475460 Msa1200140:CDS 35.0%
TCCATAATAGTGCAAACCAA+CGG + chr8_1:52476036-52476055 None:intergenic 35.0%
! TTGAGGTCTTTTGTATTGGA+AGG + chr8_1:52476108-52476127 None:intergenic 35.0%
TATGTTGCCGAGTTAGAAAA+GGG + chr8_1:52476203-52476222 None:intergenic 35.0%
ATATGTTGCCGAGTTAGAAA+AGG + chr8_1:52476204-52476223 None:intergenic 35.0%
! GTTTTCTCATTTAGTAGCAC+AGG - chr8_1:52476251-52476270 Msa1200140:intron 35.0%
GCAACGAAACATTGAATTCA+AGG + chr8_1:52476330-52476349 None:intergenic 35.0%
GCTTACGTGTTGAAATAGTT+TGG + chr8_1:52476450-52476469 None:intergenic 35.0%
TTGTCCTCCTCTAATGATAT+TGG - chr8_1:52476544-52476563 Msa1200140:intron 35.0%
TGTCCTCCTCTAATGATATT+GGG - chr8_1:52476545-52476564 Msa1200140:intron 35.0%
AATCCCAATATCATTAGAGG+AGG + chr8_1:52476551-52476570 None:intergenic 35.0%
GATACATACAAATACTCTCG+AGG + chr8_1:52476668-52476687 None:intergenic 35.0%
TACCCTGTGTATAATTGAAG+AGG + chr8_1:52476694-52476713 None:intergenic 35.0%
! ACACTTGATCTTTTATGTGG+GGG - chr8_1:52476805-52476824 Msa1200140:CDS 35.0%
GGAGAAAGAAAAGAAAGCTA+AGG - chr8_1:52476920-52476939 Msa1200140:five_prime_UTR 35.0%
GAAAGAAAAGAAAGCTAAGG+AGG - chr8_1:52476923-52476942 Msa1200140:five_prime_UTR 35.0%
AATGGGTGAAAGAAAATGAG+AGG + chr8_1:52472591-52472610 None:intergenic 35.0%
ACATTGTTACATACCAATGC+AGG - chr8_1:52472649-52472668 Msa1200140:three_prime_UTR 35.0%
ATAATGAAGCAAACCTGCAT+TGG + chr8_1:52472665-52472684 None:intergenic 35.0%
!!! TTTTTTCTTGTTGTGGGTCA+TGG - chr8_1:52472762-52472781 Msa1200140:three_prime_UTR 35.0%
!! TTTTTCTTGTTGTGGGTCAT+GGG - chr8_1:52472763-52472782 Msa1200140:three_prime_UTR 35.0%
! TTTAGAACTACTCTTCCTAG+TGG + chr8_1:52472806-52472825 None:intergenic 35.0%
!! ACTAGGAAGAGTAGTTCTAA+AGG - chr8_1:52472805-52472824 Msa1200140:three_prime_UTR 35.0%
!! AGTAGTTCTAAAGGACTGAA+AGG - chr8_1:52472814-52472833 Msa1200140:three_prime_UTR 35.0%
!! GTAGTTCTAAAGGACTGAAA+GGG - chr8_1:52472815-52472834 Msa1200140:three_prime_UTR 35.0%
GGGTTTCATTCTTATTGTCT+TGG - chr8_1:52472835-52472854 Msa1200140:three_prime_UTR 35.0%
TATTGTCTTGGAACATGTTC+TGG - chr8_1:52472847-52472866 Msa1200140:three_prime_UTR 35.0%
! ATCTCAAGACAGTGATAATG+AGG - chr8_1:52472870-52472889 Msa1200140:exon 35.0%
GTAACATCAAAATCCTTGAC+AGG + chr8_1:52473016-52473035 None:intergenic 35.0%
! AGCTTCTATAGGAATTTGCT+AGG - chr8_1:52473211-52473230 Msa1200140:intron 35.0%
TTATCAAATACTGGTCCATG+AGG - chr8_1:52473398-52473417 Msa1200140:intron 35.0%
GACAGTCAGTCATATTCAAA+TGG + chr8_1:52473515-52473534 None:intergenic 35.0%
CCACATAATGAGTCACAATT+AGG + chr8_1:52473583-52473602 None:intergenic 35.0%
CCTAATTGTGACTCATTATG+TGG - chr8_1:52473580-52473599 Msa1200140:intron 35.0%
! GATGTTACATGTGCTGATAA+TGG - chr8_1:52473632-52473651 Msa1200140:intron 35.0%
!! TCTTTTAGGAAGGTTAAAGC+TGG - chr8_1:52473689-52473708 Msa1200140:intron 35.0%
TCCAGACTTAGCATATTTAC+CGG - chr8_1:52473818-52473837 Msa1200140:intron 35.0%
AATATAAGGTCAAATGCCTC+AGG - chr8_1:52473986-52474005 Msa1200140:intron 35.0%
CTGAGACTAGACATTTAGAT+CGG - chr8_1:52474101-52474120 Msa1200140:intron 35.0%
! TAATCTAAGGCAAACATTGG+AGG - chr8_1:52474282-52474301 Msa1200140:intron 35.0%
CTATTAGCACTATGATCTGA+TGG + chr8_1:52474325-52474344 None:intergenic 35.0%
GAGTTAGACATACTAGATAG+AGG + chr8_1:52474364-52474383 None:intergenic 35.0%
TCTTCTTCGTTCAAGGAAAT+TGG + chr8_1:52474467-52474486 None:intergenic 35.0%
GTATTCTTCTTCTTCGTTCA+AGG + chr8_1:52474474-52474493 None:intergenic 35.0%
!! GTGCAGATTGATTTTCATAC+CGG + chr8_1:52474531-52474550 None:intergenic 35.0%
CAATAGAAGATACAGAAGGA+TGG + chr8_1:52474825-52474844 None:intergenic 35.0%
CATCCTTCTGTATCTTCTAT+TGG - chr8_1:52474823-52474842 Msa1200140:CDS 35.0%
GATCCAATAGAAGATACAGA+AGG + chr8_1:52474829-52474848 None:intergenic 35.0%
AATGACTCCACAACATTGAT+AGG + chr8_1:52474862-52474881 None:intergenic 35.0%
! TATTTGAGTTTACCGCTGTT+TGG - chr8_1:52474938-52474957 Msa1200140:intron 35.0%
AGTTTAAATCGTCCAAACAG+CGG + chr8_1:52474953-52474972 None:intergenic 35.0%
TCAGCTAAAATACAATGGAG+TGG - chr8_1:52475001-52475020 Msa1200140:CDS 35.0%
TCAGTGTACATGTATGTTTG+CGG - chr8_1:52475237-52475256 Msa1200140:CDS 35.0%
ATGCATAGACAAATGGTTGA+AGG - chr8_1:52475441-52475460 Msa1200140:CDS 35.0%
TCCATAATAGTGCAAACCAA+CGG + chr8_1:52476036-52476055 None:intergenic 35.0%
! TTGAGGTCTTTTGTATTGGA+AGG + chr8_1:52476108-52476127 None:intergenic 35.0%
TATGTTGCCGAGTTAGAAAA+GGG + chr8_1:52476203-52476222 None:intergenic 35.0%
ATATGTTGCCGAGTTAGAAA+AGG + chr8_1:52476204-52476223 None:intergenic 35.0%
! GTTTTCTCATTTAGTAGCAC+AGG - chr8_1:52476251-52476270 Msa1200140:intron 35.0%
GCAACGAAACATTGAATTCA+AGG + chr8_1:52476330-52476349 None:intergenic 35.0%
GCTTACGTGTTGAAATAGTT+TGG + chr8_1:52476450-52476469 None:intergenic 35.0%
TTGTCCTCCTCTAATGATAT+TGG - chr8_1:52476544-52476563 Msa1200140:intron 35.0%
TGTCCTCCTCTAATGATATT+GGG - chr8_1:52476545-52476564 Msa1200140:intron 35.0%
AATCCCAATATCATTAGAGG+AGG + chr8_1:52476551-52476570 None:intergenic 35.0%
GATACATACAAATACTCTCG+AGG + chr8_1:52476668-52476687 None:intergenic 35.0%
TACCCTGTGTATAATTGAAG+AGG + chr8_1:52476694-52476713 None:intergenic 35.0%
! ACACTTGATCTTTTATGTGG+GGG - chr8_1:52476805-52476824 Msa1200140:CDS 35.0%
GGAGAAAGAAAAGAAAGCTA+AGG - chr8_1:52476920-52476939 Msa1200140:five_prime_UTR 35.0%
GAAAGAAAAGAAAGCTAAGG+AGG - chr8_1:52476923-52476942 Msa1200140:five_prime_UTR 35.0%
! TTAGATTCTGGAAGATGGGT+CGG + chr8_1:52472692-52472711 None:intergenic 40.0%
CTAATAGTAGCAAAGCCACT+AGG - chr8_1:52472788-52472807 Msa1200140:three_prime_UTR 40.0%
! AGACAGTGATAATGAGGAAC+AGG - chr8_1:52472876-52472895 Msa1200140:exon 40.0%
GTGATTATACCAACCTGTCA+AGG - chr8_1:52473000-52473019 Msa1200140:intron 40.0%
CATCAAAATCCTTGACAGGT+TGG + chr8_1:52473012-52473031 None:intergenic 40.0%
! TTTTAGCAACATGCACCTCA+AGG + chr8_1:52473159-52473178 None:intergenic 40.0%
CAATCTATCTGACTCAGATG+AGG - chr8_1:52473655-52473674 Msa1200140:intron 40.0%
! CTACTAGTCGATTCCTTTCT+CGG - chr8_1:52473768-52473787 Msa1200140:intron 40.0%
!! AGTCTGGAGCTTTTATTACC+AGG + chr8_1:52473806-52473825 None:intergenic 40.0%
ACCGGTAAATATGCTAAGTC+TGG + chr8_1:52473822-52473841 None:intergenic 40.0%
CTTGTAGAAGATACAGGACA+AGG + chr8_1:52473860-52473879 None:intergenic 40.0%
! GAGAGTCTTGTAGAAGATAC+AGG + chr8_1:52473866-52473885 None:intergenic 40.0%
GTTGAGCATAATCTACATCC+AGG - chr8_1:52473902-52473921 Msa1200140:intron 40.0%
! GGATTAGGTTTTCCTTGCAT+CGG - chr8_1:52474007-52474026 Msa1200140:intron 40.0%
AGACATTTAGATCGGCGAAA+CGG - chr8_1:52474109-52474128 Msa1200140:intron 40.0%
CAGATAATGTTGATCGACGA+AGG + chr8_1:52474207-52474226 None:intergenic 40.0%
!! CATACTAGATAGAGGGTATC+TGG + chr8_1:52474356-52474375 None:intergenic 40.0%
AGGTAGGTATCAGGATCTAA+TGG - chr8_1:52474432-52474451 Msa1200140:intron 40.0%
ATCAGGATCTAATGGAGCAT+AGG - chr8_1:52474440-52474459 Msa1200140:intron 40.0%
AAGAAGAAGAATACGGTCAC+AGG - chr8_1:52474480-52474499 Msa1200140:intron 40.0%
GAGAGATCATGTATCTTGTC+TGG - chr8_1:52474553-52474572 Msa1200140:intron 40.0%
!! ACTTGCAGAAGCCTTATTTG+AGG - chr8_1:52474675-52474694 Msa1200140:intron 40.0%
! AAGATAAAACCACGGATTGC+TGG + chr8_1:52474801-52474820 None:intergenic 40.0%
AGGATGGGAAGATAAAACCA+CGG + chr8_1:52474809-52474828 None:intergenic 40.0%
GTAGCATCTTCTTGATGCTT+AGG + chr8_1:52474910-52474929 None:intergenic 40.0%
GCTGTTTGGACGATTTAAAC+TGG - chr8_1:52474952-52474971 Msa1200140:intron 40.0%
! TTCTGATCTTTAGCTGGCTT+AGG - chr8_1:52475271-52475290 Msa1200140:CDS 40.0%
TGCCTTGTAGAGTATAAGGA+TGG - chr8_1:52475373-52475392 Msa1200140:CDS 40.0%
CTCCATCCTTATACTCTACA+AGG + chr8_1:52475378-52475397 None:intergenic 40.0%
AATGGTTGAAGGAGATTCAC+AGG - chr8_1:52475452-52475471 Msa1200140:CDS 40.0%
TATTCAAGCGCAGATAGAGT+AGG + chr8_1:52475616-52475635 None:intergenic 40.0%
!! ATTCGAGTCTTGTTGGAACT+TGG - chr8_1:52475798-52475817 Msa1200140:CDS 40.0%
TTAAGGTGCATGACATGGTT+TGG + chr8_1:52475952-52475971 None:intergenic 40.0%
ACCAACGGCATTTGGTATTA+GGG + chr8_1:52476021-52476040 None:intergenic 40.0%
AACCAACGGCATTTGGTATT+AGG + chr8_1:52476022-52476041 None:intergenic 40.0%
CCTCATACGTACAGGTAATA+TGG + chr8_1:52476137-52476156 None:intergenic 40.0%
CCATATTACCTGTACGTATG+AGG - chr8_1:52476134-52476153 Msa1200140:intron 40.0%
ATGTTGCCGAGTTAGAAAAG+GGG + chr8_1:52476202-52476221 None:intergenic 40.0%
ACAATGTGTGCTCAATGTGA+CGG + chr8_1:52476522-52476541 None:intergenic 40.0%
TAACCACTAAAGTTCCGAGT+TGG + chr8_1:52476759-52476778 None:intergenic 40.0%
AGAAAAGAAAGCTAAGGAGG+AGG - chr8_1:52476926-52476945 Msa1200140:five_prime_UTR 40.0%
! TTAGATTCTGGAAGATGGGT+CGG + chr8_1:52472692-52472711 None:intergenic 40.0%
CTAATAGTAGCAAAGCCACT+AGG - chr8_1:52472788-52472807 Msa1200140:three_prime_UTR 40.0%
! AGACAGTGATAATGAGGAAC+AGG - chr8_1:52472876-52472895 Msa1200140:exon 40.0%
GTGATTATACCAACCTGTCA+AGG - chr8_1:52473000-52473019 Msa1200140:intron 40.0%
CATCAAAATCCTTGACAGGT+TGG + chr8_1:52473012-52473031 None:intergenic 40.0%
! TTTTAGCAACATGCACCTCA+AGG + chr8_1:52473159-52473178 None:intergenic 40.0%
CAATCTATCTGACTCAGATG+AGG - chr8_1:52473655-52473674 Msa1200140:intron 40.0%
! CTACTAGTCGATTCCTTTCT+CGG - chr8_1:52473768-52473787 Msa1200140:intron 40.0%
!! AGTCTGGAGCTTTTATTACC+AGG + chr8_1:52473806-52473825 None:intergenic 40.0%
ACCGGTAAATATGCTAAGTC+TGG + chr8_1:52473822-52473841 None:intergenic 40.0%
CTTGTAGAAGATACAGGACA+AGG + chr8_1:52473860-52473879 None:intergenic 40.0%
! GAGAGTCTTGTAGAAGATAC+AGG + chr8_1:52473866-52473885 None:intergenic 40.0%
GTTGAGCATAATCTACATCC+AGG - chr8_1:52473902-52473921 Msa1200140:intron 40.0%
! GGATTAGGTTTTCCTTGCAT+CGG - chr8_1:52474007-52474026 Msa1200140:intron 40.0%
AGACATTTAGATCGGCGAAA+CGG - chr8_1:52474109-52474128 Msa1200140:intron 40.0%
CAGATAATGTTGATCGACGA+AGG + chr8_1:52474207-52474226 None:intergenic 40.0%
!! CATACTAGATAGAGGGTATC+TGG + chr8_1:52474356-52474375 None:intergenic 40.0%
AGGTAGGTATCAGGATCTAA+TGG - chr8_1:52474432-52474451 Msa1200140:intron 40.0%
ATCAGGATCTAATGGAGCAT+AGG - chr8_1:52474440-52474459 Msa1200140:intron 40.0%
AAGAAGAAGAATACGGTCAC+AGG - chr8_1:52474480-52474499 Msa1200140:intron 40.0%
GAGAGATCATGTATCTTGTC+TGG - chr8_1:52474553-52474572 Msa1200140:intron 40.0%
!! ACTTGCAGAAGCCTTATTTG+AGG - chr8_1:52474675-52474694 Msa1200140:intron 40.0%
! AAGATAAAACCACGGATTGC+TGG + chr8_1:52474801-52474820 None:intergenic 40.0%
AGGATGGGAAGATAAAACCA+CGG + chr8_1:52474809-52474828 None:intergenic 40.0%
GTAGCATCTTCTTGATGCTT+AGG + chr8_1:52474910-52474929 None:intergenic 40.0%
GCTGTTTGGACGATTTAAAC+TGG - chr8_1:52474952-52474971 Msa1200140:intron 40.0%
! TTCTGATCTTTAGCTGGCTT+AGG - chr8_1:52475271-52475290 Msa1200140:CDS 40.0%
TGCCTTGTAGAGTATAAGGA+TGG - chr8_1:52475373-52475392 Msa1200140:CDS 40.0%
CTCCATCCTTATACTCTACA+AGG + chr8_1:52475378-52475397 None:intergenic 40.0%
AATGGTTGAAGGAGATTCAC+AGG - chr8_1:52475452-52475471 Msa1200140:CDS 40.0%
TATTCAAGCGCAGATAGAGT+AGG + chr8_1:52475616-52475635 None:intergenic 40.0%
!! ATTCGAGTCTTGTTGGAACT+TGG - chr8_1:52475798-52475817 Msa1200140:CDS 40.0%
TTAAGGTGCATGACATGGTT+TGG + chr8_1:52475952-52475971 None:intergenic 40.0%
ACCAACGGCATTTGGTATTA+GGG + chr8_1:52476021-52476040 None:intergenic 40.0%
AACCAACGGCATTTGGTATT+AGG + chr8_1:52476022-52476041 None:intergenic 40.0%
CCTCATACGTACAGGTAATA+TGG + chr8_1:52476137-52476156 None:intergenic 40.0%
CCATATTACCTGTACGTATG+AGG - chr8_1:52476134-52476153 Msa1200140:intron 40.0%
ATGTTGCCGAGTTAGAAAAG+GGG + chr8_1:52476202-52476221 None:intergenic 40.0%
ACAATGTGTGCTCAATGTGA+CGG + chr8_1:52476522-52476541 None:intergenic 40.0%
TAACCACTAAAGTTCCGAGT+TGG + chr8_1:52476759-52476778 None:intergenic 40.0%
AGAAAAGAAAGCTAAGGAGG+AGG - chr8_1:52476926-52476945 Msa1200140:five_prime_UTR 40.0%
CGAGAAAGGAATCGACTAGT+AGG + chr8_1:52473770-52473789 None:intergenic 45.0%
! AGTCGATTCCTTTCTCGGTT+TGG - chr8_1:52473773-52473792 Msa1200140:intron 45.0%
ATCAAACTGCTACAAGGTCC+TGG + chr8_1:52473923-52473942 None:intergenic 45.0%
AGGTCAAATGCCTCAGGATT+AGG - chr8_1:52473992-52474011 Msa1200140:intron 45.0%
GCAAGGAAAACCTAATCCTG+AGG + chr8_1:52474005-52474024 None:intergenic 45.0%
! TTAGGTTTTCCTTGCATCGG+TGG - chr8_1:52474010-52474029 Msa1200140:intron 45.0%
CATTGGTGCAAGAGATGAGT+TGG - chr8_1:52474033-52474052 Msa1200140:intron 45.0%
CTCTTGTTGCAGAGGGAAAA+AGG + chr8_1:52474236-52474255 None:intergenic 45.0%
GTTCTCTCTCTTGTTGCAGA+GGG + chr8_1:52474243-52474262 None:intergenic 45.0%
AGTTCTCTCTCTTGTTGCAG+AGG + chr8_1:52474244-52474263 None:intergenic 45.0%
ATTGCGAGAAGGTAGGTATC+AGG - chr8_1:52474423-52474442 Msa1200140:intron 45.0%
! TACCCAACCTCTGAAGAGAA+CGG + chr8_1:52474507-52474526 None:intergenic 45.0%
TGAAATTCACCAGCAATCCG+TGG - chr8_1:52474789-52474808 Msa1200140:CDS 45.0%
TCCTGCACCTATCAATGTTG+TGG - chr8_1:52474852-52474871 Msa1200140:CDS 45.0%
TCCACAACATTGATAGGTGC+AGG + chr8_1:52474856-52474875 None:intergenic 45.0%
GCATATTTCGCTGGACCTTA+TGG - chr8_1:52475590-52475609 Msa1200140:CDS 45.0%
TCCCTAATACCAAATGCCGT+TGG - chr8_1:52476017-52476036 Msa1200140:CDS 45.0%
TAGTGCAAACCAACGGCATT+TGG + chr8_1:52476029-52476048 None:intergenic 45.0%
!! GCCGTTGGTTTGCACTATTA+TGG - chr8_1:52476032-52476051 Msa1200140:intron 45.0%
! GGATACCCCCTTTTCTAACT+CGG - chr8_1:52476193-52476212 Msa1200140:intron 45.0%
TGTTGCCGAGTTAGAAAAGG+GGG + chr8_1:52476201-52476220 None:intergenic 45.0%
TTTCTGACTCACGTCCAACT+CGG - chr8_1:52476742-52476761 Msa1200140:intron 45.0%
AAAGCTAAGGAGGAGGTTAG+TGG - chr8_1:52476933-52476952 Msa1200140:five_prime_UTR 45.0%
AAGCTAAGGAGGAGGTTAGT+GGG - chr8_1:52476934-52476953 Msa1200140:five_prime_UTR 45.0%
! GTTAGTGGGGGGTTATCTTT+TGG - chr8_1:52476948-52476967 Msa1200140:five_prime_UTR 45.0%
CGAGAAAGGAATCGACTAGT+AGG + chr8_1:52473770-52473789 None:intergenic 45.0%
! AGTCGATTCCTTTCTCGGTT+TGG - chr8_1:52473773-52473792 Msa1200140:intron 45.0%
ATCAAACTGCTACAAGGTCC+TGG + chr8_1:52473923-52473942 None:intergenic 45.0%
AGGTCAAATGCCTCAGGATT+AGG - chr8_1:52473992-52474011 Msa1200140:intron 45.0%
GCAAGGAAAACCTAATCCTG+AGG + chr8_1:52474005-52474024 None:intergenic 45.0%
! TTAGGTTTTCCTTGCATCGG+TGG - chr8_1:52474010-52474029 Msa1200140:intron 45.0%
CATTGGTGCAAGAGATGAGT+TGG - chr8_1:52474033-52474052 Msa1200140:intron 45.0%
CTCTTGTTGCAGAGGGAAAA+AGG + chr8_1:52474236-52474255 None:intergenic 45.0%
GTTCTCTCTCTTGTTGCAGA+GGG + chr8_1:52474243-52474262 None:intergenic 45.0%
AGTTCTCTCTCTTGTTGCAG+AGG + chr8_1:52474244-52474263 None:intergenic 45.0%
ATTGCGAGAAGGTAGGTATC+AGG - chr8_1:52474423-52474442 Msa1200140:intron 45.0%
! TACCCAACCTCTGAAGAGAA+CGG + chr8_1:52474507-52474526 None:intergenic 45.0%
TGAAATTCACCAGCAATCCG+TGG - chr8_1:52474789-52474808 Msa1200140:CDS 45.0%
TCCTGCACCTATCAATGTTG+TGG - chr8_1:52474852-52474871 Msa1200140:CDS 45.0%
TCCACAACATTGATAGGTGC+AGG + chr8_1:52474856-52474875 None:intergenic 45.0%
GCATATTTCGCTGGACCTTA+TGG - chr8_1:52475590-52475609 Msa1200140:CDS 45.0%
TCCCTAATACCAAATGCCGT+TGG - chr8_1:52476017-52476036 Msa1200140:CDS 45.0%
TAGTGCAAACCAACGGCATT+TGG + chr8_1:52476029-52476048 None:intergenic 45.0%
!! GCCGTTGGTTTGCACTATTA+TGG - chr8_1:52476032-52476051 Msa1200140:intron 45.0%
! GGATACCCCCTTTTCTAACT+CGG - chr8_1:52476193-52476212 Msa1200140:intron 45.0%
TGTTGCCGAGTTAGAAAAGG+GGG + chr8_1:52476201-52476220 None:intergenic 45.0%
TTTCTGACTCACGTCCAACT+CGG - chr8_1:52476742-52476761 Msa1200140:intron 45.0%
AAAGCTAAGGAGGAGGTTAG+TGG - chr8_1:52476933-52476952 Msa1200140:five_prime_UTR 45.0%
AAGCTAAGGAGGAGGTTAGT+GGG - chr8_1:52476934-52476953 Msa1200140:five_prime_UTR 45.0%
! GTTAGTGGGGGGTTATCTTT+TGG - chr8_1:52476948-52476967 Msa1200140:five_prime_UTR 45.0%
! TCCATGAGGTGTCAACTCAG+CGG - chr8_1:52473412-52473431 Msa1200140:intron 50.0%
AGGTCGCGATGATCTTGAAC+CGG + chr8_1:52473840-52473859 None:intergenic 50.0%
! TTTCCTTGCATCGGTGGCAT+TGG - chr8_1:52474016-52474035 Msa1200140:intron 50.0%
GAGACCTCACAATTGCGAGA+AGG - chr8_1:52474412-52474431 Msa1200140:intron 50.0%
CCTACCTTCTCGCAATTGTG+AGG + chr8_1:52474419-52474438 None:intergenic 50.0%
CCTCACAATTGCGAGAAGGT+AGG - chr8_1:52474416-52474435 Msa1200140:intron 50.0%
GTCCGTTCTCTTCAGAGGTT+GGG - chr8_1:52474502-52474521 Msa1200140:intron 50.0%
CGCAGATAGAGTAGGCCATA+AGG + chr8_1:52475608-52475627 None:intergenic 50.0%
! CTCTGGTTCCTCATACGTAC+AGG + chr8_1:52476145-52476164 None:intergenic 50.0%
ACAGGGTATGCCCACTATGT+CGG - chr8_1:52476706-52476725 Msa1200140:intron 50.0%
CGTCCAACTCGGAACTTTAG+TGG - chr8_1:52476753-52476772 Msa1200140:intron 50.0%
AGCTAAGGAGGAGGTTAGTG+GGG - chr8_1:52476935-52476954 Msa1200140:five_prime_UTR 50.0%
! TCCATGAGGTGTCAACTCAG+CGG - chr8_1:52473412-52473431 Msa1200140:intron 50.0%
AGGTCGCGATGATCTTGAAC+CGG + chr8_1:52473840-52473859 None:intergenic 50.0%
! TTTCCTTGCATCGGTGGCAT+TGG - chr8_1:52474016-52474035 Msa1200140:intron 50.0%
GAGACCTCACAATTGCGAGA+AGG - chr8_1:52474412-52474431 Msa1200140:intron 50.0%
CCTACCTTCTCGCAATTGTG+AGG + chr8_1:52474419-52474438 None:intergenic 50.0%
CCTCACAATTGCGAGAAGGT+AGG - chr8_1:52474416-52474435 Msa1200140:intron 50.0%
GTCCGTTCTCTTCAGAGGTT+GGG - chr8_1:52474502-52474521 Msa1200140:intron 50.0%
CGCAGATAGAGTAGGCCATA+AGG + chr8_1:52475608-52475627 None:intergenic 50.0%
! CTCTGGTTCCTCATACGTAC+AGG + chr8_1:52476145-52476164 None:intergenic 50.0%
ACAGGGTATGCCCACTATGT+CGG - chr8_1:52476706-52476725 Msa1200140:intron 50.0%
CGTCCAACTCGGAACTTTAG+TGG - chr8_1:52476753-52476772 Msa1200140:intron 50.0%
AGCTAAGGAGGAGGTTAGTG+GGG - chr8_1:52476935-52476954 Msa1200140:five_prime_UTR 50.0%
! ACCGCTGAGTTGACACCTCA+TGG + chr8_1:52473416-52473435 None:intergenic 55.0%
GAGTGACGCCAAACCGAGAA+AGG + chr8_1:52473784-52473803 None:intergenic 55.0%
CACAGGTCCGTTCTCTTCAG+AGG - chr8_1:52474497-52474516 Msa1200140:intron 55.0%
GGTCCGTTCTCTTCAGAGGT+TGG - chr8_1:52474501-52474520 Msa1200140:intron 55.0%
CTCTTCAGAGGTTGGGTAGC+CGG - chr8_1:52474509-52474528 Msa1200140:intron 55.0%
CAGGGTATGCCCACTATGTC+GGG - chr8_1:52476707-52476726 Msa1200140:intron 55.0%
AGGGTATGCCCACTATGTCG+GGG - chr8_1:52476708-52476727 Msa1200140:intron 55.0%
AGACGTTCCCCCGACATAGT+GGG + chr8_1:52476719-52476738 None:intergenic 55.0%
GCTAAGGAGGAGGTTAGTGG+GGG - chr8_1:52476936-52476955 Msa1200140:five_prime_UTR 55.0%
CTAAGGAGGAGGTTAGTGGG+GGG - chr8_1:52476937-52476956 Msa1200140:five_prime_UTR 55.0%
! ACCGCTGAGTTGACACCTCA+TGG + chr8_1:52473416-52473435 None:intergenic 55.0%
GAGTGACGCCAAACCGAGAA+AGG + chr8_1:52473784-52473803 None:intergenic 55.0%
CACAGGTCCGTTCTCTTCAG+AGG - chr8_1:52474497-52474516 Msa1200140:intron 55.0%
GGTCCGTTCTCTTCAGAGGT+TGG - chr8_1:52474501-52474520 Msa1200140:intron 55.0%
CTCTTCAGAGGTTGGGTAGC+CGG - chr8_1:52474509-52474528 Msa1200140:intron 55.0%
CAGGGTATGCCCACTATGTC+GGG - chr8_1:52476707-52476726 Msa1200140:intron 55.0%
AGGGTATGCCCACTATGTCG+GGG - chr8_1:52476708-52476727 Msa1200140:intron 55.0%
AGACGTTCCCCCGACATAGT+GGG + chr8_1:52476719-52476738 None:intergenic 55.0%
GCTAAGGAGGAGGTTAGTGG+GGG - chr8_1:52476936-52476955 Msa1200140:five_prime_UTR 55.0%
CTAAGGAGGAGGTTAGTGGG+GGG - chr8_1:52476937-52476956 Msa1200140:five_prime_UTR 55.0%
!! TCTCGGTTTGGCGTCACTCC+TGG - chr8_1:52473785-52473804 Msa1200140:intron 60.0%
GCACCAATGCCACCGATGCA+AGG + chr8_1:52474022-52474041 None:intergenic 60.0%
GGGTATGCCCACTATGTCGG+GGG - chr8_1:52476709-52476728 Msa1200140:intron 60.0%
CAGACGTTCCCCCGACATAG+TGG + chr8_1:52476720-52476739 None:intergenic 60.0%
!! TCTCGGTTTGGCGTCACTCC+TGG - chr8_1:52473785-52473804 Msa1200140:intron 60.0%
GCACCAATGCCACCGATGCA+AGG + chr8_1:52474022-52474041 None:intergenic 60.0%
GGGTATGCCCACTATGTCGG+GGG - chr8_1:52476709-52476728 Msa1200140:intron 60.0%
CAGACGTTCCCCCGACATAG+TGG + chr8_1:52476720-52476739 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 52472491 52477166 52472491 ID=Msa1200140;Name=Msa1200140
chr8_1 mRNA 52472491 52477166 52472491 ID=Msa1200140-mRNA-1;Parent=Msa1200140;Name=Msa1200140-mRNA-1;_AED=0.02;_eAED=0.02;_QI=290|1|1|1|0.75|0.8|5|387|510
chr8_1 exon 52472491 52472947 52472491 ID=Msa1200140-mRNA-1:exon:16758;Parent=Msa1200140-mRNA-1
chr8_1 exon 52474184 52474294 52474184 ID=Msa1200140-mRNA-1:exon:16757;Parent=Msa1200140-mRNA-1
chr8_1 exon 52474725 52474876 52474725 ID=Msa1200140-mRNA-1:exon:16756;Parent=Msa1200140-mRNA-1
chr8_1 exon 52474961 52476043 52474961 ID=Msa1200140-mRNA-1:exon:16755;Parent=Msa1200140-mRNA-1
chr8_1 exon 52476760 52477166 52476760 ID=Msa1200140-mRNA-1:exon:16754;Parent=Msa1200140-mRNA-1
chr8_1 five_prime_UTR 52476877 52477166 52476877 ID=Msa1200140-mRNA-1:five_prime_utr;Parent=Msa1200140-mRNA-1
chr8_1 CDS 52476760 52476876 52476760 ID=Msa1200140-mRNA-1:cds;Parent=Msa1200140-mRNA-1
chr8_1 CDS 52474961 52476043 52474961 ID=Msa1200140-mRNA-1:cds;Parent=Msa1200140-mRNA-1
chr8_1 CDS 52474725 52474876 52474725 ID=Msa1200140-mRNA-1:cds;Parent=Msa1200140-mRNA-1
chr8_1 CDS 52474184 52474294 52474184 ID=Msa1200140-mRNA-1:cds;Parent=Msa1200140-mRNA-1
chr8_1 CDS 52472878 52472947 52472878 ID=Msa1200140-mRNA-1:cds;Parent=Msa1200140-mRNA-1
chr8_1 three_prime_UTR 52472491 52472877 52472491 ID=Msa1200140-mRNA-1:three_prime_utr;Parent=Msa1200140-mRNA-1
Gene Sequence

>Msa1200140

ATGGGTTCTAATAGTAGCAAAGCCACTAGGAAGAGTAGTTCTAAAGGACTGAAAGGGTTTCATTCTTATTGTCTTGGAACATGTTCTGGATCTCAAGACAGTGATAATGAGGAACAGAATAAAGTAAATGGCAGTGATGTTACATGTGCTGATAATGGCAATCTATCTGACTCAGATGAGGTGAAATCAAAGTCTTTTAGGAAGGTTAAAGCTGGTGACAGTGACAATACTCGCAACTCTGTTCACGCTTCTTCAACTAATTTGTTGAATCCTACTAGTCGATTCCTTTCTCGGTTTGGCGTCACTCCTGGTAATAAAAGCTCCAGACTTAGCATATTTACCGGTTCAAGATCATCGCGACCTTGTCCTGTATCTTCTACAAGACTCTCAATATTTGACGATGATGTTGAGCATAATCTACATCCAGGACCTTGTAGCAGTTTGATTAACATAAATGAAACAGCACGGTGTCATGAAGATACTCCTATTAATATAAGGTCAAATGCCTCAGGATTAGGTTTTCCTTGCATCGGTGGCATTGGTGCAAGAGATGAGTTGGAGATAAACTTATTTTCTCAGAGAATTCAAACGGAGACAGAACATACTGAGACTAGACATTTAGATCGGCGAAACGGAGCTCGAGAACAAGTTGAAGAGAATGTTCGTTTTAGTCGAACTTTAAGTGTTGGAAGACTTCGTGACAGAGTCCTTCGTCGATCAACATTATCTGACGTTACCTTTTTCCCTCTGCAACAAGAGAGAGAACTGAGAAACGATATTCAGAATAATCTAAGGCAAACATTGGAGGCAGATTCAAGAGTGTCACCATCAGATCATAGTGCTAATAGTTCTACATCCAGATACCCTCTATCTAGTATGTCTAACTCCATGTTTAGTAATCAAAACTATCGTGTTGAGACCTCACAATTGCGAGAAGGTAGGTATCAGGATCTAATGGAGCATAGGTCCAATTTCCTTGAACGAAGAAGAAGAATACGGTCACAGGTCCGTTCTCTTCAGAGGTTGGGTAGCCGGTATGAAAATCAATCTGCACATGAGAGATCATGTATCTTGTCTGGTCAACATAGAAGTGCTCGTTGTATGTGTCGATTCAGAAACCGTGACACTAATTCAAATGATGACACTGGTGCTAGAGCTAGCATATCAAGAATTGTTGTACTTGCAGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCCGTGGTTTTATCTTCCCATCCTTCTGTATCTTCTATTGGATCTGTTCCTGCACCTATCAATGTTGTGGAGTCATTGCCTGTCAAGTTATATGAGAAGTTGCCTAAGCATCAAGAAGATGCTACACAATGCTATATATGCCTTGTAGAGTATAAGGATGGAGACAGCGTGCGAGTTCTGCCTTGCAATCATGAATTTCATAGAACATGCATAGACAAATGGTTGAAGGAGATTCACAGGGTATGCCCACTATGTCGGGGGAACGTCTGCATTTCTGACTCACGTCCAACTCGGAACTTTAGTGGTTAG
Protein sequence

>Msa1200140

MGSNSSKATRKSSSKGLKGFHSYCLGTCSGSQDSDNEEQNKVNGSDVTCADNGNLSDSDEVKSKSFRKVKAGDSDNTRNSVHASSTNLLNPTSRFLSRFGVTPGNKSSRLSIFTGSRSSRPCPVSSTRLSIFDDDVEHNLHPGPCSSLININETARCHEDTPINIRSNASGLGFPCIGGIGARDELEINLFSQRIQTETEHTETRHLDRRNGAREQVEENVRFSRTLSVGRLRDRVLRRSTLSDVTFFPLQQERELRNDIQNNLRQTLEADSRVSPSDHSANSSTSRYPLSSMSNSMFSNQNYRVETSQLREGRYQDLMEHRSNFLERRRRIRSQVRSLQRLGSRYENQSAHERSCILSGQHRSARCMCRFRNRDTNSNDDTGARASISRIVVLAEALFEVLDEIHQQSVVLSSHPSVSSIGSVPAPINVVESLPVKLYEKLPKHQEDATQCYICLVEYKDGDSVRVLPCNHEFHRTCIDKWLKEIHRVCPLCRGNVCISDSRPTRNFSG*