AlfalfaGEDB | Msa1284240

M. sativa cultivar zhongmu-4 / Msa1284240

KEGG: K09291|K16280|K20478
GO: GO:0000003 GO:0000226 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005815 GO:0005816 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008104 GO:0008150 GO:0009653 GO:0009987 GO:0010927 GO:0015630 GO:0016043 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0034613 GO:0035974 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043934 GO:0043935 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044703 GO:0044732 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051321 GO:0051641 GO:0051704 GO:0070727 GO:0071840 GO:1903046
PFAM: PF01753.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1284240	XP_013445312.1	92.398	513	30	3	1	513	8	511	0.0	971

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1284240	sp\|Q9SAL0\|RGLG4_ARATH	63.830	47	17	0	465	511	354	400	5.32e-14	77.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1284240	A0A072TR76	92.398	513	30	3	1	513	8	511	0.0	971

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0070120	Msa1284240	0.803592	3.239392e-49	-8.615850e-47
Msa0745730	Msa1284240	0.808149	3.569211e-50	-8.615850e-47
Msa1084890	Msa1284240	0.805712	1.169295e-49	-8.615850e-47
Msa1280960	Msa1284240	0.828710	7.727365e-55	-8.615850e-47
Msa1284240	Msa1455200	0.801820	7.516327e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1284240	MtrunA17_Chr8g0356421	92.398	513	30	3	1	513	8	511	0.0	971
Msa1284240	MtrunA17_Chr8g0356391	32.369	553	303	13	1	513	35	556	1.70e-77	253
Msa1284240	MtrunA17_Chr8g0356381	55.556	63	22	1	457	513	345	407	4.84e-17	83.2
Msa1284240	MtrunA17_Chr6g0488251	61.224	49	19	0	465	513	259	307	1.69e-16	80.5
Msa1284240	MtrunA17_Chr2g0309781	61.224	49	19	0	465	513	355	403	3.75e-16	80.5
Msa1284240	MtrunA17_Chr2g0309791	61.224	49	19	0	465	513	369	417	5.55e-16	80.1
Msa1284240	MtrunA17_Chr3g0130411	54.902	51	23	0	461	511	387	437	3.04e-14	74.7
Msa1284240	MtrunA17_Chr6g0458051	62.000	50	19	0	462	511	437	486	4.32e-14	74.7
Msa1284240	MtrunA17_Chr3g0116661	51.667	60	25	1	456	511	376	435	8.09e-13	70.5
Msa1284240	MtrunA17_Chr7g0226791	58.000	50	21	0	462	511	396	445	1.62e-12	69.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1284240	AT1G79380.1	63.830	47	17	0	465	511	354	400	5.40e-15	77.4
Msa1284240	AT5G63970.2	40.625	96	49	2	421	511	274	366	6.97e-14	73.6
Msa1284240	AT5G63970.1	40.625	96	49	2	421	511	274	366	6.97e-14	73.6
Msa1284240	AT5G14420.3	63.043	46	17	0	466	511	423	468	5.81e-13	71.2
Msa1284240	AT5G14420.2	63.043	46	17	0	466	511	423	468	5.81e-13	71.2
Msa1284240	AT5G14420.4	63.043	46	17	0	466	511	423	468	5.81e-13	71.2
Msa1284240	AT5G14420.1	63.043	46	17	0	466	511	423	468	5.81e-13	71.2
Msa1284240	AT3G01650.2	60.870	46	18	0	466	511	444	489	1.81e-12	70.1
Msa1284240	AT3G01650.1	60.870	46	18	0	466	511	444	489	1.81e-12	70.1
Msa1284240	AT1G79280.1	32.386	176	101	3	336	495	785	958	1.33e-11	68.2

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Find 79 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCCAACCTTGACTAGCC+AGG	0.544678	8_3:-26299202	Msa1284240:intron
AAATGAAGCCAATAAACAAA+GGG	0.551784	8_3:-26304380	Msa1284240:CDS
AACAAAACAAGTACGTTGAA+AGG	0.533145	8_3:-26299761	Msa1284240:CDS
AAGAAGAATTGGAAATGATC+AGG	0.459481	8_3:-26300626	Msa1284240:intron
AAGCATGTCATATCATGCAT+TGG	0.560692	8_3:-26303573	Msa1284240:CDS
AAGGACATGGCCTTTGGTTG+TGG	0.470987	8_3:-26298959	Msa1284240:CDS
AATAAAATTCCAAGCATAGA+GGG	0.576742	8_3:+26300999	None:intergenic
AATGAGAAGGACATGGCCTT+TGG	0.423926	8_3:-26298965	Msa1284240:CDS
AATGCCTCAAAATCCAGATG+AGG	0.659583	8_3:-26301047	Msa1284240:CDS
AATTTGCTTAAGCAATGAGA+AGG	0.614017	8_3:-26298978	Msa1284240:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATTACCAATAAGAACTTGA+GGG	+	chr8_3:26298806-26298825	None:intergenic	30.0%
TCATTACCAATAAGAACTTG+AGG	+	chr8_3:26298807-26298826	None:intergenic	30.0%
GTAATGATAATACTCTTCGT+AGG	-	chr8_3:26298820-26298839	Msa1284240:CDS	30.0%
CAAATGAAGCCAATAAACAA+AGG	-	chr8_3:26298878-26298897	Msa1284240:intron	30.0%
AGGAAAGATGGAATAAGATT+TGG	+	chr8_3:26299064-26299083	None:intergenic	30.0%
CAAAAAGGATAAAGGAAAGA+TGG	+	chr8_3:26299076-26299095	None:intergenic	30.0%
AAAAAAACTTCTACCCAGAA+AGG	+	chr8_3:26299128-26299147	None:intergenic	30.0%
TCGTACGTAAAGTTTATTCA+TGG	-	chr8_3:26299508-26299527	Msa1284240:intron	30.0%
GATTTACAAAAACTCCATGT+CGG	-	chr8_3:26300015-26300034	Msa1284240:intron	30.0%
ATTTACAAAAACTCCATGTC+GGG	-	chr8_3:26300016-26300035	Msa1284240:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	26298787	26304494	26298787	ID=Msa1284240;Name=Msa1284240
chr8_3	mRNA	26298787	26304494	26298787	ID=Msa1284240-mRNA-1;Parent=Msa1284240;Name=Msa1284240-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0\|0\|1\|1\|1\|14\|0\|513
chr8_3	exon	26304229	26304494	26304229	ID=Msa1284240-mRNA-1:exon:9168;Parent=Msa1284240-mRNA-1
chr8_3	exon	26303471	26303600	26303471	ID=Msa1284240-mRNA-1:exon:9167;Parent=Msa1284240-mRNA-1
chr8_3	exon	26302585	26302784	26302585	ID=Msa1284240-mRNA-1:exon:9166;Parent=Msa1284240-mRNA-1
chr8_3	exon	26301400	26301517	26301400	ID=Msa1284240-mRNA-1:exon:9165;Parent=Msa1284240-mRNA-1
chr8_3	exon	26300996	26301074	26300996	ID=Msa1284240-mRNA-1:exon:9164;Parent=Msa1284240-mRNA-1
chr8_3	exon	26300775	26300815	26300775	ID=Msa1284240-mRNA-1:exon:9163;Parent=Msa1284240-mRNA-1
chr8_3	exon	26300627	26300697	26300627	ID=Msa1284240-mRNA-1:exon:9162;Parent=Msa1284240-mRNA-1
chr8_3	exon	26300420	26300522	26300420	ID=Msa1284240-mRNA-1:exon:9161;Parent=Msa1284240-mRNA-1
chr8_3	exon	26300241	26300339	26300241	ID=Msa1284240-mRNA-1:exon:9160;Parent=Msa1284240-mRNA-1
chr8_3	exon	26300104	26300166	26300104	ID=Msa1284240-mRNA-1:exon:9159;Parent=Msa1284240-mRNA-1
chr8_3	exon	26299638	26299817	26299638	ID=Msa1284240-mRNA-1:exon:9158;Parent=Msa1284240-mRNA-1
chr8_3	exon	26299203	26299250	26299203	ID=Msa1284240-mRNA-1:exon:9157;Parent=Msa1284240-mRNA-1
chr8_3	exon	26298952	26299008	26298952	ID=Msa1284240-mRNA-1:exon:9156;Parent=Msa1284240-mRNA-1
chr8_3	exon	26298787	26298873	26298787	ID=Msa1284240-mRNA-1:exon:9155;Parent=Msa1284240-mRNA-1
chr8_3	CDS	26304229	26304494	26304229	ID=Msa1284240-mRNA-1:cds;Parent=Msa1284240-mRNA-1
chr8_3	CDS	26303471	26303600	26303471	ID=Msa1284240-mRNA-1:cds;Parent=Msa1284240-mRNA-1
chr8_3	CDS	26302585	26302784	26302585	ID=Msa1284240-mRNA-1:cds;Parent=Msa1284240-mRNA-1
chr8_3	CDS	26301400	26301517	26301400	ID=Msa1284240-mRNA-1:cds;Parent=Msa1284240-mRNA-1
chr8_3	CDS	26300996	26301074	26300996	ID=Msa1284240-mRNA-1:cds;Parent=Msa1284240-mRNA-1
chr8_3	CDS	26300775	26300815	26300775	ID=Msa1284240-mRNA-1:cds;Parent=Msa1284240-mRNA-1
chr8_3	CDS	26300627	26300697	26300627	ID=Msa1284240-mRNA-1:cds;Parent=Msa1284240-mRNA-1
chr8_3	CDS	26300420	26300522	26300420	ID=Msa1284240-mRNA-1:cds;Parent=Msa1284240-mRNA-1
chr8_3	CDS	26300241	26300339	26300241	ID=Msa1284240-mRNA-1:cds;Parent=Msa1284240-mRNA-1
chr8_3	CDS	26300104	26300166	26300104	ID=Msa1284240-mRNA-1:cds;Parent=Msa1284240-mRNA-1
chr8_3	CDS	26299638	26299817	26299638	ID=Msa1284240-mRNA-1:cds;Parent=Msa1284240-mRNA-1
chr8_3	CDS	26299203	26299250	26299203	ID=Msa1284240-mRNA-1:cds;Parent=Msa1284240-mRNA-1
chr8_3	CDS	26298952	26299008	26298952	ID=Msa1284240-mRNA-1:cds;Parent=Msa1284240-mRNA-1
chr8_3	CDS	26298787	26298873	26298787	ID=Msa1284240-mRNA-1:cds;Parent=Msa1284240-mRNA-1

Gene Sequence

>Msa1284240

ATGGATCAAGATTGTTCCCTCAAGTTCTTATTGGTAATGATAATACTCTTCGTAGGGTTTCTTGCTTGGCTAGAAAACAAAGTAGCAAACTCAAATGAAGCCAATAAACAAAGGGAGGAGGAGGAGGTGGAAGTTAGTGATGAAATATTATTGTTTGAACAAGATGAAGAAGAGAACAAACTAAGTGAATATTGTGTTTGCTCCTTTTGTGGCAAATTCAGAAACATAATCAAAAGATGCTCACGATGCAAAAATGCTATATATTGCTCAAAAGCATGTCATATCATGCATTGGAGATTTTGGCACAAAGATGAATGTGTTGAGATAGTGTCTGCAGAAGAACATGAGGAATCATCTTTTCATGAAACTCAGTGCTTTCTCTTGGAGCATGGAAACGAAAACTCTAAGTACTCATTCAATGATGATGATGATGATGAGCATAAAACATATGAGGGGGATGTTTACTATATTGAAGGAGGAGAAAATAGTGTTGAGTTAATTAAAGAAACAGCAATAGGGCTTCAACATAGTGGCTGTGCAGTTTGTGGCAATCCATGTTCCCAAAAATGCTCAAGATGCAAAGCTATAAAATATTGCTCACAAACATGCCAACATTTTGATTGGAAATTAGGGCATAAATTCCAATGTCGTGTTAAGAAGACAAGTTCAACTCAAGTAACAACAAGTAATCAAGAATGGCCTGCAGATGAAAATGTTATAATGCCTCAAAATCCAGATGAGGTGGTAGATAATGATCATTCATATGACCCTCTATGCTTGGAATTTTATTCAGAAGAAAATATCAACAACAAGGCTCTGATTTTAATTTCTCAGGAAGCTAACAACAAAGTCCAAGAGGTTGAGGAAAAAATGAGAGACCTAAAAGAAGAATTGGAAATGATCAGAAGTGAAAATATAACACTGCAATCAAAGCTTAACTATTGGGAAATTAGAGCAAAGAATTCCTCTAATAGACTTTACAGTTTCAAGAAAGAAAATGAACACCAGTTGTTTATTTTGAAGCATGAAAATGAATTGATATCGAATGCTGAGAAACAAGCTCGTCAAATGGTTACGAATTTATCTCAAAGGCTTCACTGTTTGCAGATTGCAATGGAAACTGGAGTAGCAGAGAGGAAAAAACAAGAAGAGTTTATACATATGCTGCAGAATGAATGTACCAAGACTAAGAGAGAGTTTCATGAACAAAACAAGTACGTTGAAAGGCTTAGACACAAGCTTGATAATGTATCTCAATTTCCTATAAGAATGGCTGAAGAGACAAGACAAAAATTAGTCAGTCCTTCCAAAGCAATTTTGGCTGAAGAATCCAAGGCTGCTGTTGTTGAGGTGTACAAGACAATCAGTTTAAGTAGAAATCCAACCTTGACTAGCCAGTCTTGTACAATTTGCTTAAGCAATGAGAAGGACATGGCCTTTGGTTGTGGACATATGACTTGCAGAGAGTGTGGGTCAAAAATTCGCAAATGTCATATATGTAGAAAGAAGATCACTGATCGTATTAGGTTATTCCCTGGATGA

Protein sequence

>Msa1284240

MDQDCSLKFLLVMIILFVGFLAWLENKVANSNEANKQREEEEVEVSDEILLFEQDEEENKLSEYCVCSFCGKFRNIIKRCSRCKNAIYCSKACHIMHWRFWHKDECVEIVSAEEHEESSFHETQCFLLEHGNENSKYSFNDDDDDEHKTYEGDVYYIEGGENSVELIKETAIGLQHSGCAVCGNPCSQKCSRCKAIKYCSQTCQHFDWKLGHKFQCRVKKTSSTQVTTSNQEWPADENVIMPQNPDEVVDNDHSYDPLCLEFYSEENINNKALILISQEANNKVQEVEEKMRDLKEELEMIRSENITLQSKLNYWEIRAKNSSNRLYSFKKENEHQLFILKHENELISNAEKQARQMVTNLSQRLHCLQIAMETGVAERKKQEEFIHMLQNECTKTKREFHEQNKYVERLRHKLDNVSQFPIRMAEETRQKLVSPSKAILAEESKAAVVEVYKTISLSRNPTLTSQSCTICLSNEKDMAFGCGHMTCRECGSKIRKCHICRKKITDRIRLFPG*