AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0070120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070120 MtrunA17_Chr1g0174701 92.379 538 9 5 1 537 1 507 0.0 1000
Msa0070120 MtrunA17_Chr7g0258321 71.183 465 92 7 73 537 42 464 0.0 655
Msa0070120 MtrunA17_Chr8g0353501 56.928 332 107 6 208 535 166 465 8.13e-125 374
Msa0070120 MtrunA17_Chr7g0256211 55.429 350 118 7 192 536 136 452 7.45e-123 368
Msa0070120 MtrunA17_Chr2g0321431 42.442 516 187 12 65 536 20 469 4.02e-121 365
Msa0070120 MtrunA17_Chr4g0026401 41.498 494 204 10 75 536 21 461 1.23e-110 338
Msa0070120 MtrunA17_Chr5g0422771 50.467 321 126 4 219 536 174 464 3.60e-106 325
Msa0070120 MtrunA17_Chr3g0124601 48.328 329 139 5 208 536 64 361 1.30e-98 303
Msa0070120 MtrunA17_Chr1g0210151 47.478 337 143 5 200 536 38 340 1.31e-96 296
Msa0070120 MtrunA17_Chr5g0424861 44.136 324 150 4 211 533 54 347 2.83e-80 255
Msa0070120 MtrunA17_Chr8g0382861 40.872 367 174 8 170 536 33 356 6.52e-80 254
Msa0070120 MtrunA17_Chr3g0115371 45.338 311 142 3 224 534 65 347 3.13e-79 252
Msa0070120 MtrunA17_Chr3g0093451 48.947 190 83 4 200 384 29 209 6.97e-55 184
Msa0070120 MtrunA17_Chr5g0424851 39.431 246 122 3 289 533 3 222 6.53e-49 175
Msa0070120 MtrunA17_Chr5g0424851 39.207 227 112 2 298 524 226 426 1.36e-46 168
Msa0070120 MtrunA17_Chr1g0196951 28.319 226 113 6 309 529 59 240 2.03e-16 79.0
Msa0070120 MtrunA17_Chr2g0315631 22.523 222 152 3 304 525 8 209 9.32e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070120 AT5G06839.3 60.215 465 141 11 90 537 22 459 0.0 531
Msa0070120 AT5G06839.1 57.701 461 116 9 90 537 22 416 7.01e-177 505
Msa0070120 AT5G06839.2 57.576 462 116 10 90 537 22 417 4.15e-175 500
Msa0070120 AT1G08320.1 44.848 495 195 12 68 536 11 453 1.20e-124 374
Msa0070120 AT1G08320.4 44.848 495 195 12 68 536 11 453 1.20e-124 374
Msa0070120 AT1G08320.3 44.848 495 195 12 68 536 11 453 1.20e-124 374
Msa0070120 AT1G08320.2 55.848 342 106 6 195 536 33 329 2.20e-123 366
Msa0070120 AT1G08320.5 55.848 342 106 6 195 536 33 329 2.20e-123 366
Msa0070120 AT5G06950.2 52.695 334 124 5 205 536 29 330 2.37e-113 340
Msa0070120 AT5G06950.4 52.695 334 124 5 205 536 29 330 2.37e-113 340
Msa0070120 AT5G06950.1 52.695 334 124 5 205 536 29 330 2.37e-113 340
Msa0070120 AT5G06950.5 52.695 334 124 5 205 536 29 330 2.37e-113 340
Msa0070120 AT5G06950.3 52.695 334 124 5 205 536 29 330 2.37e-113 340
Msa0070120 AT3G12250.5 51.964 331 127 4 208 536 3 303 7.25e-112 335
Msa0070120 AT3G12250.6 51.964 331 127 4 208 536 30 330 9.93e-112 335
Msa0070120 AT3G12250.2 51.964 331 127 4 208 536 30 330 9.93e-112 335
Msa0070120 AT3G12250.7 51.964 331 127 4 208 536 30 330 9.93e-112 335
Msa0070120 AT3G12250.1 51.964 331 127 4 208 536 30 330 9.93e-112 335
Msa0070120 AT5G06960.3 55.660 318 107 5 222 536 24 310 1.94e-111 334
Msa0070120 AT5G06960.2 55.660 318 107 5 222 536 44 330 2.26e-111 335
Msa0070120 AT5G06960.1 55.660 318 107 5 222 536 44 330 2.26e-111 335
Msa0070120 AT3G12250.3 51.964 331 127 4 208 536 24 324 3.69e-111 334
Msa0070120 AT3G12250.4 51.964 331 127 4 208 536 55 355 1.90e-110 333
Msa0070120 AT1G68640.1 52.134 328 127 4 210 535 152 451 4.14e-107 328
Msa0070120 AT5G10030.5 49.684 316 128 5 221 536 78 362 3.50e-97 299
Msa0070120 AT5G10030.3 49.684 316 128 5 221 536 78 362 3.50e-97 299
Msa0070120 AT5G10030.1 49.684 316 128 5 221 536 78 362 3.50e-97 299
Msa0070120 AT5G10030.4 49.684 316 128 5 221 536 78 362 3.50e-97 299
Msa0070120 AT5G10030.2 49.684 316 128 5 221 536 78 362 3.50e-97 299
Msa0070120 AT5G65210.5 41.855 399 188 7 147 536 3 366 3.00e-94 292
Msa0070120 AT5G65210.7 41.855 399 188 7 147 536 3 366 3.00e-94 292
Msa0070120 AT5G65210.3 41.855 399 188 7 147 536 3 366 3.00e-94 292
Msa0070120 AT5G65210.1 41.855 399 188 7 147 536 3 366 3.00e-94 292
Msa0070120 AT5G65210.2 41.855 399 188 7 147 536 3 366 3.00e-94 292
Msa0070120 AT5G65210.4 41.855 399 188 7 147 536 3 366 3.00e-94 292
Msa0070120 AT5G65210.6 47.853 326 134 7 211 536 7 296 2.64e-93 287
Msa0070120 AT1G77920.1 46.459 353 137 6 197 536 53 366 3.44e-93 289
Msa0070120 AT1G22070.1 48.649 333 143 4 204 536 78 382 8.97e-93 289
Msa0070120 AT1G58330.1 25.397 252 139 6 293 526 3 223 1.25e-12 67.8

Find 105 sgRNAs with CRISPR-Local

Find 456 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCAAGTGCTTATGATTT+AGG 0.170937 1_2:-39816026 Msa0070120:CDS
GAGCATAGAATTGTTATTAT+TGG 0.196059 1_2:+39816470 None:intergenic
CATGACCATCAAATTTCTTT+TGG 0.210584 1_2:-39816327 Msa0070120:CDS
CTAATACTATTCATAGAAAT+TGG 0.252336 1_2:+39813985 None:intergenic
ATTTATACCTTTGAATTAGA+TGG 0.288466 1_2:+39815231 None:intergenic
TGCTTATGATTTAGGTGAAT+TGG 0.291461 1_2:-39816018 Msa0070120:CDS
GTACCTACCTTGACAGGTTT+TGG 0.299604 1_2:+39814934 None:intergenic
TTTAAGCAATCCTCCTAATA+TGG 0.308534 1_2:-39812248 Msa0070120:CDS
ACCCACATATACCAAGTATT+TGG 0.313791 1_2:+39812362 None:intergenic
GCAATGTTTGATGTGGAGTA+TGG 0.316893 1_2:-39813860 Msa0070120:CDS
AATGGGAGGAGGTGCACTTT+TGG 0.318194 1_2:-39814025 Msa0070120:CDS
CTCATCACTCACACTATTCT+TGG 0.319137 1_2:+39808347 None:intergenic
CAGACCATCTGAACTCATTA+AGG 0.331549 1_2:-39813615 Msa0070120:intron
CCCATGTAGTTAGCCATATT+AGG 0.347360 1_2:+39812235 None:intergenic
GGCTCACCTTGCACGCCCAT+TGG 0.354028 1_2:+39813369 None:intergenic
GTTATATGTGGAAAATTGTT+TGG 0.359400 1_2:-39813756 Msa0070120:CDS
GGCTAACTACATGGGACAAA+TGG 0.386586 1_2:-39812227 Msa0070120:CDS
GCTCACCTTGCACGCCCATT+GGG 0.394366 1_2:+39813370 None:intergenic
CACATGAAGCAACGTTCAGC+TGG 0.396922 1_2:+39813650 None:intergenic
GGAGTATGGGAGGTGGTTAG+AGG 0.399529 1_2:-39813846 Msa0070120:CDS
TACGGTTAGCGCCGGCCCAA+TGG 0.402342 1_2:-39813385 Msa0070120:CDS
CACCAAATACTTGGTATATG+TGG 0.406944 1_2:-39812364 Msa0070120:CDS
AAGAGTGGAGAGCTTGTTCA+TGG 0.411247 1_2:+39812198 None:intergenic
TCATAGAAATTGGAATTCCT+TGG 0.413274 1_2:+39813995 None:intergenic
TCATTCCAAAAGAAATTTGA+TGG 0.416690 1_2:+39816322 None:intergenic
ACGGTTAGCGCCGGCCCAAT+GGG 0.425160 1_2:-39813384 Msa0070120:CDS
ATTTAATTAACCTTAGGATC+TGG 0.426639 1_2:+39814742 None:intergenic
TTCGAGCATTGAGTTCTCTC+TGG 0.430265 1_2:-39808384 Msa0070120:CDS
TTTGGTGGTGCAGGTGCAGA+AGG 0.442112 1_2:+39814952 None:intergenic
TCGTCAAGCTGCAAGATGTT+TGG 0.442179 1_2:-39808434 Msa0070120:CDS
TATAATGTACCTACCTTGAC+AGG 0.447542 1_2:+39814928 None:intergenic
GATGTTGATTCTGTTGTTGT+TGG 0.452856 1_2:+39816364 None:intergenic
TCCTAATATGGCTAACTACA+TGG 0.453054 1_2:-39812236 Msa0070120:CDS
CTTACGGAGCACCAAATACT+TGG 0.457443 1_2:-39812373 Msa0070120:CDS
GGTTGAGTGCATCAAGCCCT+TGG 0.467685 1_2:+39812302 None:intergenic
ACCTTGCACGCCCATTGGGC+CGG 0.467968 1_2:+39813374 None:intergenic
AGTATTTGGTGCTCCGTAAG+AGG 0.471286 1_2:+39812376 None:intergenic
CGTTGCTTCATGTGGATTGG+TGG 0.475727 1_2:-39813641 Msa0070120:CDS
AAGTCAAATTGAGCCTCTTA+CGG 0.480461 1_2:-39812389 Msa0070120:CDS
ACAGAGAACTCATCATCATC+AGG 0.490034 1_2:-39815315 Msa0070120:intron
TTGCAGTTATGATGCCGTTA+CGG 0.492350 1_2:-39813403 Msa0070120:CDS
GCCGGCCCAATGGGCGTGCA+AGG 0.500083 1_2:-39813375 Msa0070120:intron
TTCATGCAAGTGTTCATCTA+CGG 0.502953 1_2:+39813790 None:intergenic
ACACTATTCTTGGCGAGGAC+GGG 0.506076 1_2:+39808357 None:intergenic
GTATTTGGTATAGGTTAGCA+TGG 0.513035 1_2:-39815055 Msa0070120:intron
GTTGAGTGCATCAAGCCCTT+GGG 0.513231 1_2:+39812303 None:intergenic
ACTTGCATGAAAATGAGCTT+AGG 0.517257 1_2:-39813778 Msa0070120:CDS
AAAACCATCTCAACCGTCCA+TGG 0.517927 1_2:-39815001 Msa0070120:CDS
TAATAACAATTCTATGCTCA+TGG 0.520824 1_2:-39816466 Msa0070120:CDS
TCTATGAATAGTATTAGCTC+AGG 0.520974 1_2:-39813979 Msa0070120:intron
ATCTCAACCGTCCATGGAGT+TGG 0.523885 1_2:-39814995 Msa0070120:CDS
TTTACCTTAATGAGTTCAGA+TGG 0.525808 1_2:+39813611 None:intergenic
ACCTTTGAATTAGATGGTGG+TGG 0.533763 1_2:+39815237 None:intergenic
AACTCCATGGACGGTTGAGA+TGG 0.534438 1_2:+39814997 None:intergenic
GATGCAGACGATGAACTGTT+TGG 0.535085 1_2:+39808470 None:intergenic
CAGCTGAACGTTGCTTCATG+TGG 0.535836 1_2:-39813649 Msa0070120:CDS
CACACTATTCTTGGCGAGGA+CGG 0.538683 1_2:+39808356 None:intergenic
TGGTTTGCCAACTCCATGGA+CGG 0.539075 1_2:+39814988 None:intergenic
ATCAACACAAGAGGCAGAAG+AGG 0.540377 1_2:-39812332 Msa0070120:CDS
TCGTTGGTTTGCCAACTCCA+TGG 0.541761 1_2:+39814984 None:intergenic
CAAGTAGTTGCTAGGCATAG+AGG 0.542058 1_2:+39816281 None:intergenic
GAACGTTGCTTCATGTGGAT+TGG 0.542533 1_2:-39813644 Msa0070120:CDS
GGTGGTTAGAGGAGCATCAC+AGG 0.543826 1_2:-39813835 Msa0070120:CDS
ACATGAAGCAACGTTCAGCT+GGG 0.545343 1_2:+39813651 None:intergenic
TTATAGTCTCTGAAAGAGAC+TGG 0.550594 1_2:+39812281 None:intergenic
GCTACATGCATTGGTTGAGA+TGG 0.551490 1_2:+39815261 None:intergenic
AAAACTCACAAGTAGTTGCT+AGG 0.556391 1_2:+39816273 None:intergenic
AAATGAGCTTAGGTTATATG+TGG 0.558714 1_2:-39813768 Msa0070120:CDS
TAGGGCGTGTTAATGGGAGG+AGG 0.559293 1_2:-39814036 Msa0070120:CDS
ACCACCACCATCTAATTCAA+AGG 0.566192 1_2:-39815238 Msa0070120:intron
TATTTGGTATAGGTTAGCAT+GGG 0.566436 1_2:-39815054 Msa0070120:intron
ACCAAATACTTGGTATATGT+GGG 0.567198 1_2:-39812363 Msa0070120:CDS
TTGGTGGTGCAGGTGCAGAA+GGG 0.571374 1_2:+39814953 None:intergenic
GGAGCCACTTGTTATTGGAG+AGG 0.576956 1_2:+39815026 None:intergenic
GGTGGTGGTGCTACATGCAT+TGG 0.577778 1_2:+39815252 None:intergenic
CTTTGATCTTGAACACTAGA+GGG 0.579134 1_2:+39815951 None:intergenic
GCAGAAGAGGCACTTTCCCA+AGG 0.580930 1_2:-39812319 Msa0070120:CDS
GGGAAAATGTTAAGAGTTGG+TGG 0.582239 1_2:+39815282 None:intergenic
CAATGTTTGATGTGGAGTAT+GGG 0.584437 1_2:-39813859 Msa0070120:CDS
AGAGGCTGCAATGTTTGATG+TGG 0.585256 1_2:-39813867 Msa0070120:CDS
ATGTAGTTAGCCATATTAGG+AGG 0.586012 1_2:+39812238 None:intergenic
TATACCTTTGAATTAGATGG+TGG 0.586657 1_2:+39815234 None:intergenic
TCTTTGATCTTGAACACTAG+AGG 0.589650 1_2:+39815950 None:intergenic
ATAGAGGATGAAGATGAAGA+TGG 0.597582 1_2:+39816297 None:intergenic
CCTAATATGGCTAACTACAT+GGG 0.597846 1_2:-39812235 Msa0070120:CDS
CAGAAGAGGCACTTTCCCAA+GGG 0.599073 1_2:-39812318 Msa0070120:CDS
CTACATGCATTGGTTGAGAT+GGG 0.602831 1_2:+39815262 None:intergenic
GATGGGAAAATGTTAAGAGT+TGG 0.603515 1_2:+39815279 None:intergenic
TCTCACAAAACTTTCAAGAG+TGG 0.609018 1_2:+39812183 None:intergenic
GATGCCGTTACGGTTAGCGC+CGG 0.613446 1_2:-39813393 Msa0070120:CDS
TGCACCACCAAAACCTGTCA+AGG 0.616194 1_2:-39814941 Msa0070120:intron
TTCAGCAGCTAGAAACAAGT+AGG 0.617268 1_2:-39814458 Msa0070120:CDS
TGGGCCGGCGCTAACCGTAA+CGG 0.618512 1_2:+39813389 None:intergenic
CATGAAGCAACGTTCAGCTG+GGG 0.618932 1_2:+39813652 None:intergenic
CACTCACACTATTCTTGGCG+AGG 0.619291 1_2:+39808352 None:intergenic
TTGATGTGGAGTATGGGAGG+TGG 0.624452 1_2:-39813853 Msa0070120:CDS
GCAGAAAGAGAATAATCGCA+AGG 0.635102 1_2:-39814803 Msa0070120:intron
CACTGCAGGCAGATAATCTG+AGG 0.637739 1_2:-39808495 Msa0070120:intron
ACTTCAAGTTCTGAACATGA+AGG 0.639217 1_2:-39814775 Msa0070120:CDS
TTAACCTCTCCAATAACAAG+TGG 0.650451 1_2:-39815030 Msa0070120:CDS
TGTTTGATGTGGAGTATGGG+AGG 0.654392 1_2:-39813856 Msa0070120:CDS
AAGACTTGCTCAGAATAGAG+AGG 0.666657 1_2:-39814644 Msa0070120:CDS
GTTGCAACAATCAACACAAG+AGG 0.670460 1_2:-39812341 Msa0070120:CDS
AAAATGTTAAGAGTTGGTGG+TGG 0.691086 1_2:+39815285 None:intergenic
TGATGGTCATGCATATGATG+AGG 0.700141 1_2:+39816339 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTGATAATTTGTATT+TGG - chr1_2:39809827-39809846 Msa0070120:intron 10.0%
!! GATTAATTAGAATAAAAAAT+GGG + chr1_2:39810049-39810068 None:intergenic 10.0%
!! TGATTAATTAGAATAAAAAA+TGG + chr1_2:39810050-39810069 None:intergenic 10.0%
!! TAATTAATTTAATTAACCTT+AGG + chr1_2:39810164-39810183 None:intergenic 10.0%
!!! TTTTATATATTTCATTTTAG+GGG - chr1_2:39810755-39810774 Msa0070120:intron 10.0%
!! TTTACTTAAACAAATAAAAA+AGG + chr1_2:39811849-39811868 None:intergenic 10.0%
!! AAAATTACTTAAAATGATAA+GGG + chr1_2:39812393-39812412 None:intergenic 10.0%
!! AAAAATTACTTAAAATGATA+AGG + chr1_2:39812394-39812413 None:intergenic 10.0%
!!! ATTAATATTGTTTTATTTGA+TGG - chr1_2:39812464-39812483 Msa0070120:intron 10.0%
!!! TACAATTTTACAAAATATTA+AGG - chr1_2:39813046-39813065 Msa0070120:intron 10.0%
!! TCTAAAAAAAAAAAATAAGT+TGG + chr1_2:39813440-39813459 None:intergenic 10.0%
!!! AACTTATTTTTTTTTTTTAG+AGG - chr1_2:39813439-39813458 Msa0070120:intron 10.0%
!!! AATACTCTAAAAATATAAAT+GGG + chr1_2:39813562-39813581 None:intergenic 10.0%
!!! AAATACTCTAAAAATATAAA+TGG + chr1_2:39813563-39813582 None:intergenic 10.0%
!! TTAATTATCCTTAAATAATT+TGG + chr1_2:39813671-39813690 None:intergenic 10.0%
!! TTATATCTTTATACTATATA+TGG - chr1_2:39814258-39814277 Msa0070120:intron 10.0%
!! TAATTTAAACAAAAATTTGT+AGG + chr1_2:39814535-39814554 None:intergenic 10.0%
!!! TTGATTGTTTTTTAATTTAT+TGG + chr1_2:39814837-39814856 None:intergenic 10.0%
!!! TTTTTTTTATTATTTGAAGA+AGG + chr1_2:39815363-39815382 None:intergenic 10.0%
!! AAAAATAAACAGTAATTAAA+TGG + chr1_2:39815772-39815791 None:intergenic 10.0%
!!! TAGTTTTGAAAATTATAAAT+TGG + chr1_2:39815873-39815892 None:intergenic 10.0%
!!! AAAATAAAAGTACTAGTATA+CGG + chr1_2:39809166-39809185 None:intergenic 15.0%
!!! TATTTGCTTTTATACATTTT+AGG - chr1_2:39810358-39810377 Msa0070120:intron 15.0%
!!! TTTATATATTTCATTTTAGG+GGG - chr1_2:39810756-39810775 Msa0070120:intron 15.0%
!!! AATGTTTTGTTTGATTTTTA+GGG - chr1_2:39810843-39810862 Msa0070120:intron 15.0%
!!! AGTTTGATTTTATTAGTATA+TGG + chr1_2:39810951-39810970 None:intergenic 15.0%
!!! TTAAAACCAATATTTCTATA+AGG + chr1_2:39811339-39811358 None:intergenic 15.0%
!!! TTTTATTTAGATATCTGTAA+CGG + chr1_2:39811656-39811675 None:intergenic 15.0%
!! ATTGTTAAATTTCAGATAAA+AGG + chr1_2:39811794-39811813 None:intergenic 15.0%
!! ATTATTTCATATTGAATTTC+TGG - chr1_2:39813160-39813179 Msa0070120:intron 15.0%
!!! ATTAAGTACAACAAATATTT+TGG + chr1_2:39813758-39813777 None:intergenic 15.0%
!!! ATACACTTTTAATACAAAAA+AGG - chr1_2:39813827-39813846 Msa0070120:CDS 15.0%
!!! AACCATGAAATATATTTTAA+AGG + chr1_2:39813922-39813941 None:intergenic 15.0%
!! AAAAATGAAATGTTGTATAA+CGG - chr1_2:39814372-39814391 Msa0070120:intron 15.0%
!!! TTAATTTTTTTTTTTTGTGG+TGG + chr1_2:39814676-39814695 None:intergenic 15.0%
!! ATATTCACTTAATCAAATTA+TGG + chr1_2:39815212-39815231 None:intergenic 15.0%
!!! TGAAGAAAATTTTCAATTAT+TGG - chr1_2:39815283-39815302 Msa0070120:CDS 15.0%
!! AAAAATTAATTAAACGAGAA+AGG + chr1_2:39815619-39815638 None:intergenic 15.0%
!!! TAAAAAATCTTTTGAATCAT+AGG + chr1_2:39815686-39815705 None:intergenic 15.0%
!!! TTTTCTTCATATAATTTTCA+TGG - chr1_2:39815832-39815851 Msa0070120:intron 15.0%
!!! TATTTGTTTTCATAAGAAAC+TGG + chr1_2:39808757-39808776 None:intergenic 20.0%
!!! CTGTTTTCAGTATTAATTTT+TGG - chr1_2:39809030-39809049 Msa0070120:intron 20.0%
!! ATTTATACCTTTGAATTAGA+TGG + chr1_2:39809669-39809688 None:intergenic 20.0%
!!! TGATAATTTGTATTTGGTAT+AGG - chr1_2:39809833-39809852 Msa0070120:intron 20.0%
!! CTTATATACCAATTTATTTC+AGG - chr1_2:39810410-39810429 Msa0070120:intron 20.0%
!!! TAGTTTTTACACAAAAATAG+AGG + chr1_2:39810525-39810544 None:intergenic 20.0%
!!! TTTCATTTCAGAAGTATATT+CGG + chr1_2:39810660-39810679 None:intergenic 20.0%
!!! TCAAACAAAACATTGTTTTT+AGG + chr1_2:39810837-39810856 None:intergenic 20.0%
!!! CAATGTTTTGTTTGATTTTT+AGG - chr1_2:39810842-39810861 Msa0070120:intron 20.0%
!! CTAATACTATTCATAGAAAT+TGG + chr1_2:39810915-39810934 None:intergenic 20.0%
!!! TAAGTTTGACACATATTTTT+TGG + chr1_2:39811457-39811476 None:intergenic 20.0%
!! AAAAAATATGTGTCAAACTT+AGG - chr1_2:39811456-39811475 Msa0070120:intron 20.0%
!!! AAAGTTTGATACGTATTTTT+GGG + chr1_2:39811602-39811621 None:intergenic 20.0%
!! CTTAAACAAATAAAAAAGGA+TGG + chr1_2:39811845-39811864 None:intergenic 20.0%
!! ATTACCCTTAAATTTACTTT+GGG + chr1_2:39811921-39811940 None:intergenic 20.0%
!! TATTACCCTTAAATTTACTT+TGG + chr1_2:39811922-39811941 None:intergenic 20.0%
!!! CAATAACAAATTTTAGTGAA+AGG + chr1_2:39812030-39812049 None:intergenic 20.0%
!!! CTTTCACTAAAATTTGTTAT+TGG - chr1_2:39812028-39812047 Msa0070120:intron 20.0%
!! TTGTTTATAATAGTGATTAG+AGG - chr1_2:39812320-39812339 Msa0070120:CDS 20.0%
!! CATGTGCTTTAATAATATTT+AGG - chr1_2:39812349-39812368 Msa0070120:CDS 20.0%
!!! TATAATGTTTTGCATTTTCT+TGG - chr1_2:39812794-39812813 Msa0070120:intron 20.0%
!! TCCTTACTTAATTACTAAAT+TGG - chr1_2:39813001-39813020 Msa0070120:intron 20.0%
!! CCTTACTTAATTACTAAATT+GGG - chr1_2:39813002-39813021 Msa0070120:intron 20.0%
!!! AACTTGGTAAAAATTTTCAA+GGG + chr1_2:39813239-39813258 None:intergenic 20.0%
!!! TAACTTGGTAAAAATTTTCA+AGG + chr1_2:39813240-39813259 None:intergenic 20.0%
!! GAGAAATACCAAATTATTTA+AGG - chr1_2:39813660-39813679 Msa0070120:CDS 20.0%
!! ATTTATAACATTGAGTATCA+AGG - chr1_2:39813987-39814006 Msa0070120:CDS 20.0%
!! TATGAAGATTATATCAATGA+GGG + chr1_2:39814075-39814094 None:intergenic 20.0%
!! ATATGAAGATTATATCAATG+AGG + chr1_2:39814076-39814095 None:intergenic 20.0%
!! TTAAATTCATGTAATCGATT+TGG - chr1_2:39814692-39814711 Msa0070120:intron 20.0%
!!! TTCTATAACTTTTAAACGTT+CGG + chr1_2:39814957-39814976 None:intergenic 20.0%
!! CATATGAATAATTTGAGTAA+GGG - chr1_2:39815075-39815094 Msa0070120:intron 20.0%
!!! TTGGTAATTACTTTAAAATG+TGG - chr1_2:39815302-39815321 Msa0070120:CDS 20.0%
!! TGAACTTTGCTAAATAATAA+TGG - chr1_2:39815455-39815474 Msa0070120:intron 20.0%
!! CATTCAAATAAATTATCAGT+TGG + chr1_2:39815498-39815517 None:intergenic 20.0%
!! AAAATATAGTGAACATATAG+AGG + chr1_2:39815712-39815731 None:intergenic 20.0%
!!! TTGAATAGTCTTCTTTTTTT+TGG - chr1_2:39816008-39816027 Msa0070120:CDS 20.0%
!! TAGAATAACAAAGAGTTATA+TGG + chr1_2:39816261-39816280 None:intergenic 20.0%
!! GAGCATAGAATTGTTATTAT+TGG + chr1_2:39808430-39808449 None:intergenic 25.0%
! TAATAACAATTCTATGCTCA+TGG - chr1_2:39808431-39808450 Msa0070120:CDS 25.0%
! TCATTCCAAAAGAAATTTGA+TGG + chr1_2:39808578-39808597 None:intergenic 25.0%
!!! GCATTTTTTTTGTATCTAGA+TGG - chr1_2:39808907-39808926 Msa0070120:intron 25.0%
!!! TTTTAAAGATTCTCTGTCTA+AGG - chr1_2:39809104-39809123 Msa0070120:intron 25.0%
! TTTAAAGATTCTCTGTCTAA+GGG - chr1_2:39809105-39809124 Msa0070120:intron 25.0%
! ATTTAGTTGAAGAAGACAAA+GGG + chr1_2:39809449-39809468 None:intergenic 25.0%
! TATTTAGTTGAAGAAGACAA+AGG + chr1_2:39809450-39809469 None:intergenic 25.0%
!! CCAAGTCTTATCTTAATTAT+GGG + chr1_2:39809500-39809519 None:intergenic 25.0%
!! ACCAAGTCTTATCTTAATTA+TGG + chr1_2:39809501-39809520 None:intergenic 25.0%
! TGGTAAGATATTATTGATGA+TGG - chr1_2:39809517-39809536 Msa0070120:intron 25.0%
! TTTGCAATATGAATGATGTA+TGG - chr1_2:39810072-39810091 Msa0070120:intron 25.0%
! ATTTAATTAACCTTAGGATC+TGG + chr1_2:39810158-39810177 None:intergenic 25.0%
!! AAGCAAATACTACAGTTTTT+GGG + chr1_2:39810347-39810366 None:intergenic 25.0%
!! AAAGCAAATACTACAGTTTT+TGG + chr1_2:39810348-39810367 None:intergenic 25.0%
! AACATAAGCCTGAAATAAAT+TGG + chr1_2:39810421-39810440 None:intergenic 25.0%
! TTAAAAATCTGTATCAAGAC+TGG - chr1_2:39810549-39810568 Msa0070120:intron 25.0%
!!! ATCTGTTCTAAATTTTGACT+AGG + chr1_2:39810707-39810726 None:intergenic 25.0%
! GTTATATGTGGAAAATTGTT+TGG - chr1_2:39811141-39811160 Msa0070120:intron 25.0%
! TGGAAATGTTTCAAGAAATA+TGG + chr1_2:39811437-39811456 None:intergenic 25.0%
!! CAAAGTTTGATACGTATTTT+TGG + chr1_2:39811603-39811622 None:intergenic 25.0%
! CAAAAATACGTATCAAACTT+TGG - chr1_2:39811601-39811620 Msa0070120:intron 25.0%
!!! TTGTCACAAAATTTTAGTGT+GGG + chr1_2:39811731-39811750 None:intergenic 25.0%
!!! TTTGTCACAAAATTTTAGTG+TGG + chr1_2:39811732-39811751 None:intergenic 25.0%
! TGATAAATCACCAAAACAAA+AGG - chr1_2:39811756-39811775 Msa0070120:intron 25.0%
! GATAAATCACCAAAACAAAA+GGG - chr1_2:39811757-39811776 Msa0070120:intron 25.0%
! AATTTGACTAAAACTGTAGT+TGG - chr1_2:39811891-39811910 Msa0070120:intron 25.0%
! AGTTCCCAAAGTAAATTTAA+GGG - chr1_2:39811914-39811933 Msa0070120:intron 25.0%
! ATGAATGAATGTGGAATTAA+AGG - chr1_2:39811953-39811972 Msa0070120:intron 25.0%
! AAGTATTTCAGTATAGAGTT+AGG - chr1_2:39811983-39812002 Msa0070120:intron 25.0%
!!! ACAAATTTTAGTGAAAGGTA+TGG + chr1_2:39812025-39812044 None:intergenic 25.0%
! TGTTATTGGAATCAGAAAAA+TGG - chr1_2:39812042-39812061 Msa0070120:intron 25.0%
! ATTATAATAGTGACCGAATA+GGG + chr1_2:39812202-39812221 None:intergenic 25.0%
! AATTATAATAGTGACCGAAT+AGG + chr1_2:39812203-39812222 None:intergenic 25.0%
! TTTAGGCGTGTAAAAAAAAA+TGG - chr1_2:39812366-39812385 Msa0070120:CDS 25.0%
! GCAAAACATTATAAGTTGTT+GGG + chr1_2:39812787-39812806 None:intergenic 25.0%
! TGCAAAACATTATAAGTTGT+TGG + chr1_2:39812788-39812807 None:intergenic 25.0%
!!! TTTTAATCGAATTGCTATTG+TGG - chr1_2:39812912-39812931 Msa0070120:intron 25.0%
! CCCAATTTAGTAATTAAGTA+AGG + chr1_2:39813005-39813024 None:intergenic 25.0%
! GGTATAATATATATGTTCCA+TGG + chr1_2:39813102-39813121 None:intergenic 25.0%
!!! ACTTGGTAAAAATTTTCAAG+GGG + chr1_2:39813238-39813257 None:intergenic 25.0%
!! CTCTCATTTTCATATTAGTA+AGG - chr1_2:39813475-39813494 Msa0070120:intron 25.0%
! CTAAAAAAGAGACATAGAAA+TGG - chr1_2:39813638-39813657 Msa0070120:CDS 25.0%
! TACAAATCTAGACTTACATT+TGG + chr1_2:39813700-39813719 None:intergenic 25.0%
!!! GGCCTTTAAAATATATTTCA+TGG - chr1_2:39813917-39813936 Msa0070120:intron 25.0%
!! TATGTTATGTCTTCAAGTTA+CGG + chr1_2:39814135-39814154 None:intergenic 25.0%
! ATCTTAGGAAAATATGTGTT+TGG + chr1_2:39814475-39814494 None:intergenic 25.0%
!! AAACACATATTTTCCTAAGA+TGG - chr1_2:39814474-39814493 Msa0070120:intron 25.0%
! TGATAAAAAAACACCATCTT+AGG + chr1_2:39814490-39814509 None:intergenic 25.0%
! ATGTTGTAAAGTACAATAAG+AGG - chr1_2:39814806-39814825 Msa0070120:intron 25.0%
! TGAATTGGACTTATATGTAT+CGG + chr1_2:39814910-39814929 None:intergenic 25.0%
! AGTTATAGAATTTAACCATC+AGG - chr1_2:39814967-39814986 Msa0070120:CDS 25.0%
! GCATATGAATAATTTGAGTA+AGG - chr1_2:39815074-39815093 Msa0070120:intron 25.0%
! ATAAACGAACAATAGACATT+TGG - chr1_2:39815153-39815172 Msa0070120:intron 25.0%
! TAAACGAACAATAGACATTT+GGG - chr1_2:39815154-39815173 Msa0070120:intron 25.0%
!! TTTAGGATATCTAAACAACT+TGG + chr1_2:39815427-39815446 None:intergenic 25.0%
! CAAAGTTCACAAAGAAATTT+AGG + chr1_2:39815444-39815463 None:intergenic 25.0%
! CAAACTAGAATAAGAAACTT+AGG - chr1_2:39815534-39815553 Msa0070120:intron 25.0%
! TAAGAAACTTAGGAATCATT+AGG - chr1_2:39815544-39815563 Msa0070120:intron 25.0%
! AAAACTGGTCAAATTGAAAA+GGG + chr1_2:39815650-39815669 None:intergenic 25.0%
! AAAAACTGGTCAAATTGAAA+AGG + chr1_2:39815651-39815670 None:intergenic 25.0%
!!! ATTTGACCAGTTTTTAGTTT+TGG - chr1_2:39815656-39815675 Msa0070120:intron 25.0%
!! AGTCAGTTGATTTAAATTAC+TGG - chr1_2:39815977-39815996 Msa0070120:CDS 25.0%
!!! AATAGTCTTCTTTTTTTTGG+TGG - chr1_2:39816011-39816030 Msa0070120:CDS 25.0%
! AATTCAAACTCAAACTAGAA+GGG + chr1_2:39816325-39816344 None:intergenic 25.0%
! AAATTCAAACTCAAACTAGA+AGG + chr1_2:39816326-39816345 None:intergenic 25.0%
CTAAAAAACTTGCATCTACT+TGG + chr1_2:39808404-39808423 None:intergenic 30.0%
!!! CAAGTAGATGCAAGTTTTTT+AGG - chr1_2:39808402-39808421 Msa0070120:CDS 30.0%
! TTGAGATTCATGTGAGTTTT+TGG + chr1_2:39808460-39808479 None:intergenic 30.0%
! GATGATGAAGAAGATTTTGA+TGG + chr1_2:39808512-39808531 None:intergenic 30.0%
! CATGACCATCAAATTTCTTT+TGG - chr1_2:39808570-39808589 Msa0070120:intron 30.0%
GATTCAAGTGCTTATGATTT+AGG - chr1_2:39808871-39808890 Msa0070120:intron 30.0%
TGCTTATGATTTAGGTGAAT+TGG - chr1_2:39808879-39808898 Msa0070120:intron 30.0%
TTTGGTCAAATTCAGTAAGA+TGG - chr1_2:39809048-39809067 Msa0070120:intron 30.0%
TTGGTCAAATTCAGTAAGAT+GGG - chr1_2:39809049-39809068 Msa0070120:intron 30.0%
TCATGACATATAACAAACCT+TGG - chr1_2:39809332-39809351 Msa0070120:intron 30.0%
ATTATGGGAAATGTAACACT+TGG + chr1_2:39809485-39809504 None:intergenic 30.0%
CCCATAATTAAGATAAGACT+TGG - chr1_2:39809497-39809516 Msa0070120:intron 30.0%
TATACCTTTGAATTAGATGG+TGG + chr1_2:39809666-39809685 None:intergenic 30.0%
ATTATGAGATTGTCAACTCA+AGG + chr1_2:39809752-39809771 None:intergenic 30.0%
TATTTGGTATAGGTTAGCAT+GGG - chr1_2:39809843-39809862 Msa0070120:intron 30.0%
AAAACACAATCATCCTGTAA+GGG + chr1_2:39810320-39810339 None:intergenic 30.0%
AAAAACACAATCATCCTGTA+AGG + chr1_2:39810321-39810340 None:intergenic 30.0%
TCATAGAAATTGGAATTCCT+TGG + chr1_2:39810905-39810924 None:intergenic 30.0%
TCTATGAATAGTATTAGCTC+AGG - chr1_2:39810918-39810937 Msa0070120:intron 30.0%
GCACTTGTAACAATTTAGTT+TGG - chr1_2:39810996-39811015 Msa0070120:intron 30.0%
!! AGTTTGGAACAAATTTTCAG+AGG - chr1_2:39811012-39811031 Msa0070120:intron 30.0%
AAATGAGCTTAGGTTATATG+TGG - chr1_2:39811129-39811148 Msa0070120:intron 30.0%
!! TTCTAGCTAGAACATTTTTG+AGG + chr1_2:39811189-39811208 None:intergenic 30.0%
TTTACCTTAATGAGTTCAGA+TGG + chr1_2:39811289-39811308 None:intergenic 30.0%
!! ACCTAGCCTTATAGAAATAT+TGG - chr1_2:39811330-39811349 Msa0070120:intron 30.0%
! ACCAATATTTCTATAAGGCT+AGG + chr1_2:39811334-39811353 None:intergenic 30.0%
GGAATATGTGATCAAAATTG+CGG - chr1_2:39811477-39811496 Msa0070120:intron 30.0%
! TGTGCAATCTAAAATGATGA+TGG - chr1_2:39811684-39811703 Msa0070120:intron 30.0%
!! TATAGATCACCCTTTTGTTT+TGG + chr1_2:39811769-39811788 None:intergenic 30.0%
GAGTTCCCAAAGTAAATTTA+AGG - chr1_2:39811913-39811932 Msa0070120:intron 30.0%
TTTGATGTCATGAATGAATG+TGG - chr1_2:39811944-39811963 Msa0070120:intron 30.0%
!! ATCAGAAAAATGGACTAAGA+TGG - chr1_2:39812052-39812071 Msa0070120:intron 30.0%
AGATGGAAATAGAAGAAAAG+TGG - chr1_2:39812069-39812088 Msa0070120:intron 30.0%
!!! ACTTGTTTTACACGAGTTTA+TGG + chr1_2:39812161-39812180 None:intergenic 30.0%
ACCAAATACTTGGTATATGT+GGG - chr1_2:39812534-39812553 Msa0070120:intron 30.0%
TTTAAGCAATCCTCCTAATA+TGG - chr1_2:39812649-39812668 Msa0070120:intron 30.0%
CATGGTATAAATTGCAGTTA+TGG + chr1_2:39813084-39813103 None:intergenic 30.0%
CATAACTGCAATTTATACCA+TGG - chr1_2:39813082-39813101 Msa0070120:intron 30.0%
! TTGTGAATAGTTTGTGATCT+TGG - chr1_2:39813194-39813213 Msa0070120:intron 30.0%
!!! ATCTTGGTTAACTAGTTTTG+TGG - chr1_2:39813210-39813229 Msa0070120:intron 30.0%
!! CTTGGTAAAAATTTTCAAGG+GGG + chr1_2:39813237-39813256 None:intergenic 30.0%
GTTATGGACTTATAGTAACT+TGG + chr1_2:39813255-39813274 None:intergenic 30.0%
AATCTGTTCCTTCAATCATA+TGG - chr1_2:39813304-39813323 Msa0070120:intron 30.0%
ATCTGTTCCTTCAATCATAT+GGG - chr1_2:39813305-39813324 Msa0070120:intron 30.0%
GGAGTCATATTATAAAATCC+AGG + chr1_2:39813419-39813438 None:intergenic 30.0%
AATCTAGACTTACATTTGGT+TGG + chr1_2:39813696-39813715 None:intergenic 30.0%
AGCTAAAAAGCAACAAGTTA+TGG + chr1_2:39814167-39814186 None:intergenic 30.0%
!! TCTAAAACTCAAACACGTTT+TGG - chr1_2:39814189-39814208 Msa0070120:intron 30.0%
! CTAAAACTCAAACACGTTTT+GGG - chr1_2:39814190-39814209 Msa0070120:intron 30.0%
!!! TTGGGTTGGCTTATTTATTT+TGG - chr1_2:39814208-39814227 Msa0070120:intron 30.0%
!!! TTGGCTTATTTATTTTGGTG+AGG - chr1_2:39814213-39814232 Msa0070120:intron 30.0%
TAGGAAAATATGTGTTTGGT+CGG + chr1_2:39814471-39814490 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG - chr1_2:39814628-39814647 Msa0070120:CDS 30.0%
TGCATAATATATGCAAGGTT+CGG - chr1_2:39814633-39814652 Msa0070120:CDS 30.0%
!!! TTTTTTTTTTTGTGGTGGCA+GGG + chr1_2:39814671-39814690 None:intergenic 30.0%
!!! TTTTTTTTTTTTGTGGTGGC+AGG + chr1_2:39814672-39814691 None:intergenic 30.0%
CACTTAATCAAATTATGGAG+TGG + chr1_2:39815207-39815226 None:intergenic 30.0%
GGTATACCAAAACTAAAAAC+TGG + chr1_2:39815665-39815684 None:intergenic 30.0%
TGCATAAAATATGCAAGATC+CGG + chr1_2:39816054-39816073 None:intergenic 30.0%
AGAACTTTACTGAGAAAAGA+AGG - chr1_2:39816158-39816177 Msa0070120:intron 30.0%
! TTAATTTGAAAACTCACTGC+AGG - chr1_2:39816388-39816407 Msa0070120:CDS 30.0%
!! GATGTTGATTCTGTTGTTGT+TGG + chr1_2:39808536-39808555 None:intergenic 35.0%
ATAGAGGATGAAGATGAAGA+TGG + chr1_2:39808603-39808622 None:intergenic 35.0%
AAAACTCACAAGTAGTTGCT+AGG + chr1_2:39808627-39808646 None:intergenic 35.0%
TTCATAAGAAACTGGCATGT+TGG + chr1_2:39808749-39808768 None:intergenic 35.0%
CTTTGATCTTGAACACTAGA+GGG + chr1_2:39808949-39808968 None:intergenic 35.0%
TCTTTGATCTTGAACACTAG+AGG + chr1_2:39808950-39808969 None:intergenic 35.0%
GTCATGATCTCCTTAGAAAA+AGG - chr1_2:39809356-39809375 Msa0070120:intron 35.0%
ATGATCTCCTTAGAAAAAGG+TGG - chr1_2:39809359-39809378 Msa0070120:intron 35.0%
! GCATATACCACCTTTTTCTA+AGG + chr1_2:39809369-39809388 None:intergenic 35.0%
!! AAAATGTTAAGAGTTGGTGG+TGG + chr1_2:39809615-39809634 None:intergenic 35.0%
GATGGGAAAATGTTAAGAGT+TGG + chr1_2:39809621-39809640 None:intergenic 35.0%
GTATTTGGTATAGGTTAGCA+TGG - chr1_2:39809842-39809861 Msa0070120:intron 35.0%
TTAACCTCTCCAATAACAAG+TGG - chr1_2:39809867-39809886 Msa0070120:intron 35.0%
!!! TTTTTGGAGCCACTTGTTAT+TGG + chr1_2:39809879-39809898 None:intergenic 35.0%
TATAATGTACCTACCTTGAC+AGG + chr1_2:39809972-39809991 None:intergenic 35.0%
!! ACTTCAAGTTCTGAACATGA+AGG - chr1_2:39810122-39810141 Msa0070120:intron 35.0%
AAAAAGCAGGCTTAGGAAAA+AGG - chr1_2:39810283-39810302 Msa0070120:intron 35.0%
CTACAATTGTTGGATCATGT+TGG + chr1_2:39810805-39810824 None:intergenic 35.0%
ATCCAACAATTGTAGAGCAA+AGG - chr1_2:39810810-39810829 Msa0070120:intron 35.0%
!!! TGATTTTTAGGGCGTGTTAA+TGG - chr1_2:39810854-39810873 Msa0070120:intron 35.0%
!!! GATTTTTAGGGCGTGTTAAT+GGG - chr1_2:39810855-39810874 Msa0070120:intron 35.0%
CAATGTTTGATGTGGAGTAT+GGG - chr1_2:39811038-39811057 Msa0070120:intron 35.0%
TTCATGCAAGTGTTCATCTA+CGG + chr1_2:39811110-39811129 None:intergenic 35.0%
ACTTGCATGAAAATGAGCTT+AGG - chr1_2:39811119-39811138 Msa0070120:intron 35.0%
!!! GATGTGTTCCATCTTGTTTT+TGG - chr1_2:39811211-39811230 Msa0070120:intron 35.0%
!!! TCCATCTTGTTTTTGGAATG+TGG - chr1_2:39811218-39811237 Msa0070120:intron 35.0%
TCCACATTCCAAAAACAAGA+TGG + chr1_2:39811222-39811241 None:intergenic 35.0%
TTTAAATTGCCGTTACAGTC+AGG - chr1_2:39811354-39811373 Msa0070120:intron 35.0%
TTAAATTGCCGTTACAGTCA+GGG - chr1_2:39811355-39811374 Msa0070120:intron 35.0%
ATATGGACCCCAAAGATTTA+GGG + chr1_2:39811420-39811439 None:intergenic 35.0%
AATATGGACCCCAAAGATTT+AGG + chr1_2:39811421-39811440 None:intergenic 35.0%
GGGAAATGTTTCGAGAAATT+TGG + chr1_2:39811582-39811601 None:intergenic 35.0%
!! AGTGAAAGGTATGGCTTTAT+GGG + chr1_2:39812016-39812035 None:intergenic 35.0%
! TAGTGAAAGGTATGGCTTTA+TGG + chr1_2:39812017-39812036 None:intergenic 35.0%
GAAATAGAAGAAAAGTGGCA+CGG - chr1_2:39812074-39812093 Msa0070120:intron 35.0%
AAATAGAAGAAAAGTGGCAC+GGG - chr1_2:39812075-39812094 Msa0070120:intron 35.0%
TCTCTATCTCTCATTGTCTA+TGG - chr1_2:39812098-39812117 Msa0070120:intron 35.0%
CTCTATCTCTCATTGTCTAT+GGG - chr1_2:39812099-39812118 Msa0070120:intron 35.0%
ACACGAGTTTATGGTCAATT+AGG + chr1_2:39812152-39812171 None:intergenic 35.0%
ACTTCTTCTTACACCCTATT+CGG - chr1_2:39812186-39812205 Msa0070120:CDS 35.0%
AAGTCAAATTGAGCCTCTTA+CGG - chr1_2:39812508-39812527 Msa0070120:intron 35.0%
CACCAAATACTTGGTATATG+TGG - chr1_2:39812533-39812552 Msa0070120:intron 35.0%
ACCCACATATACCAAGTATT+TGG + chr1_2:39812538-39812557 None:intergenic 35.0%
! TTATAGTCTCTGAAAGAGAC+TGG + chr1_2:39812619-39812638 None:intergenic 35.0%
ATGTAGTTAGCCATATTAGG+AGG + chr1_2:39812662-39812681 None:intergenic 35.0%
TCCTAATATGGCTAACTACA+TGG - chr1_2:39812661-39812680 Msa0070120:intron 35.0%
CCTAATATGGCTAACTACAT+GGG - chr1_2:39812662-39812681 Msa0070120:intron 35.0%
TCTCACAAAACTTTCAAGAG+TGG + chr1_2:39812717-39812736 None:intergenic 35.0%
!! TCTTGAAAGTTTTGTGAGAC+AGG - chr1_2:39812718-39812737 Msa0070120:intron 35.0%
TTCCTTCAATCATATGGGTA+GGG - chr1_2:39813310-39813329 Msa0070120:intron 35.0%
TTACATAGAATCTACGAACC+TGG - chr1_2:39813398-39813417 Msa0070120:CDS 35.0%
AAGATATACACAGCTAGAGA+GGG - chr1_2:39813528-39813547 Msa0070120:intron 35.0%
GTCGAGTTTAGTATTGTACT+AGG - chr1_2:39813854-39813873 Msa0070120:CDS 35.0%
TACTAGGAAAAGCTTAGCAA+AGG - chr1_2:39813870-39813889 Msa0070120:intron 35.0%
!! TTAGCAAAGGTGCCAATATA+AGG - chr1_2:39813883-39813902 Msa0070120:intron 35.0%
CAATATAAGGACAAGTTGCA+CGG - chr1_2:39813896-39813915 Msa0070120:intron 35.0%
AACATAAACACGTGAGACTA+TGG - chr1_2:39814035-39814054 Msa0070120:CDS 35.0%
TATGAAGTGAGTGTGTGAAT+TGG + chr1_2:39814416-39814435 None:intergenic 35.0%
CACACTCACTTCATACTATT+TGG - chr1_2:39814421-39814440 Msa0070120:CDS 35.0%
!! CTTGTGGTTTGTTAAGTCAT+TGG + chr1_2:39814447-39814466 None:intergenic 35.0%
GGTTCAGTAAAATGCTGTTA+TGG + chr1_2:39814514-39814533 None:intergenic 35.0%
GCATAATATATGCAAGGTTC+GGG - chr1_2:39814634-39814653 Msa0070120:CDS 35.0%
CATAATATATGCAAGGTTCG+GGG - chr1_2:39814635-39814654 Msa0070120:CDS 35.0%
!!! TTTTTTTTTTGTGGTGGCAG+GGG + chr1_2:39814670-39814689 None:intergenic 35.0%
! GACTAAAGTGTTACCTTTGT+TGG - chr1_2:39814859-39814878 Msa0070120:intron 35.0%
!! CTTATATGTATCGGTTGTCA+GGG + chr1_2:39814901-39814920 None:intergenic 35.0%
!! ACTTATATGTATCGGTTGTC+AGG + chr1_2:39814902-39814921 None:intergenic 35.0%
TAGTTACGTCTCGATAGAAT+CGG - chr1_2:39815011-39815030 Msa0070120:CDS 35.0%
TCAAATTATGGAGTGGTTGT+GGG + chr1_2:39815200-39815219 None:intergenic 35.0%
ATCAAATTATGGAGTGGTTG+TGG + chr1_2:39815201-39815220 None:intergenic 35.0%
! CAACTTGGTCAATTTTGCTA+CGG + chr1_2:39815412-39815431 None:intergenic 35.0%
GCATATTGAAAAAGTTGCAC+AGG + chr1_2:39815803-39815822 None:intergenic 35.0%
!!! AGTCTTCTTTTTTTTGGTGG+TGG - chr1_2:39816014-39816033 Msa0070120:CDS 35.0%
TGATGGTCATGCATATGATG+AGG + chr1_2:39808561-39808580 None:intergenic 40.0%
!! CTCTGTCTAAGGGTTTGTTT+TGG - chr1_2:39809115-39809134 Msa0070120:intron 40.0%
ACAGAGAACTCATCATCATC+AGG - chr1_2:39809582-39809601 Msa0070120:intron 40.0%
GGGAAAATGTTAAGAGTTGG+TGG + chr1_2:39809618-39809637 None:intergenic 40.0%
!! CTACATGCATTGGTTGAGAT+GGG + chr1_2:39809638-39809657 None:intergenic 40.0%
ACCACCACCATCTAATTCAA+AGG - chr1_2:39809659-39809678 Msa0070120:intron 40.0%
! ACCTTTGAATTAGATGGTGG+TGG + chr1_2:39809663-39809682 None:intergenic 40.0%
! CAGAAGGGTTTTCATTTCGT+TGG + chr1_2:39809932-39809951 None:intergenic 40.0%
GCAGAAAGAGAATAATCGCA+AGG - chr1_2:39810094-39810113 Msa0070120:intron 40.0%
ACCAAAAACACCAGATCCTA+AGG - chr1_2:39810145-39810164 Msa0070120:intron 40.0%
! ACCTTAGGATCTGGTGTTTT+TGG + chr1_2:39810149-39810168 None:intergenic 40.0%
! AAGACTTGCTCAGAATAGAG+AGG - chr1_2:39810253-39810272 Msa0070120:intron 40.0%
TTCAGCAGCTAGAAACAAGT+AGG - chr1_2:39810439-39810458 Msa0070120:intron 40.0%
GTCCTTTGCTCTACAATTGT+TGG + chr1_2:39810815-39810834 None:intergenic 40.0%
GCAATGTTTGATGTGGAGTA+TGG - chr1_2:39811037-39811056 Msa0070120:intron 40.0%
CAGACCATCTGAACTCATTA+AGG - chr1_2:39811282-39811301 Msa0070120:intron 40.0%
TTGCAGTTATGATGCCGTTA+CGG - chr1_2:39811494-39811513 Msa0070120:intron 40.0%
ATTTGGACCCCAAAGATTTG+AGG + chr1_2:39811565-39811584 None:intergenic 40.0%
TTAGGCGGAAAATTGGGTAT+TGG + chr1_2:39812134-39812153 None:intergenic 40.0%
GGTCAATTAGGCGGAAAATT+GGG + chr1_2:39812140-39812159 None:intergenic 40.0%
TGGTCAATTAGGCGGAAAAT+TGG + chr1_2:39812141-39812160 None:intergenic 40.0%
CGAGTTTATGGTCAATTAGG+CGG + chr1_2:39812149-39812168 None:intergenic 40.0%
GTTGCAACAATCAACACAAG+AGG - chr1_2:39812556-39812575 Msa0070120:intron 40.0%
CCCATGTAGTTAGCCATATT+AGG + chr1_2:39812665-39812684 None:intergenic 40.0%
TAAGTCCATAACTGATCTCG+TGG - chr1_2:39813263-39813282 Msa0070120:intron 40.0%
AAGTCCATAACTGATCTCGT+GGG - chr1_2:39813264-39813283 Msa0070120:intron 40.0%
GTTCCTTCAATCATATGGGT+AGG - chr1_2:39813309-39813328 Msa0070120:intron 40.0%
TATAATGTGAGGGTTGGAGT+TGG + chr1_2:39813339-39813358 None:intergenic 40.0%
GTAACAACTTCATGAGAGTG+AGG + chr1_2:39813382-39813401 None:intergenic 40.0%
CAAGATATACACAGCTAGAG+AGG - chr1_2:39813527-39813546 Msa0070120:intron 40.0%
AGATATACACAGCTAGAGAG+GGG - chr1_2:39813529-39813548 Msa0070120:intron 40.0%
CGTGCAACTTGTCCTTATAT+TGG + chr1_2:39813898-39813917 None:intergenic 40.0%
GAGACTATGGTAGATTAGTG+TGG - chr1_2:39814048-39814067 Msa0070120:intron 40.0%
CCATGACATCACACAGATAT+GGG + chr1_2:39814106-39814125 None:intergenic 40.0%
ACCATGACATCACACAGATA+TGG + chr1_2:39814107-39814126 None:intergenic 40.0%
!! AACTCAAACACGTTTTGGGT+TGG - chr1_2:39814194-39814213 Msa0070120:intron 40.0%
ATAAGTCCAATTCATGCGAC+TGG - chr1_2:39814916-39814935 Msa0070120:intron 40.0%
AGTTACGTCTCGATAGAATC+GGG - chr1_2:39815012-39815031 Msa0070120:CDS 40.0%
ACTTACAGACAAGTGTAGCT+CGG + chr1_2:39815333-39815352 None:intergenic 40.0%
!!! TTCTTTTTTTTGGTGGTGGC+CGG - chr1_2:39816018-39816037 Msa0070120:CDS 40.0%
CAAGTAGTTGCTAGGCATAG+AGG + chr1_2:39808619-39808638 None:intergenic 45.0%
CTAAGGAGATCATGACACCA+AGG + chr1_2:39809352-39809371 None:intergenic 45.0%
!! GCTACATGCATTGGTTGAGA+TGG + chr1_2:39809639-39809658 None:intergenic 45.0%
!!! GGACGGTTGAGATGGTTTTT+TGG + chr1_2:39809895-39809914 None:intergenic 45.0%
AAAACCATCTCAACCGTCCA+TGG - chr1_2:39809896-39809915 Msa0070120:intron 45.0%
! GTACCTACCTTGACAGGTTT+TGG + chr1_2:39809966-39809985 None:intergenic 45.0%
CAGCAAGAAAAAGCAGGCTT+AGG - chr1_2:39810276-39810295 Msa0070120:intron 45.0%
!!! TTTTAGGGCGTGTTAATGGG+AGG - chr1_2:39810858-39810877 Msa0070120:intron 45.0%
AGAGGCTGCAATGTTTGATG+TGG - chr1_2:39811030-39811049 Msa0070120:intron 45.0%
TGTTTGATGTGGAGTATGGG+AGG - chr1_2:39811041-39811060 Msa0070120:intron 45.0%
ACATGAAGCAACGTTCAGCT+GGG + chr1_2:39811249-39811268 None:intergenic 45.0%
GAACGTTGCTTCATGTGGAT+TGG - chr1_2:39811253-39811272 Msa0070120:intron 45.0%
!! AGTATTTGGTGCTCCGTAAG+AGG + chr1_2:39812524-39812543 None:intergenic 45.0%
! CTTACGGAGCACCAAATACT+TGG - chr1_2:39812524-39812543 Msa0070120:intron 45.0%
ATCAACACAAGAGGCAGAAG+AGG - chr1_2:39812565-39812584 Msa0070120:intron 45.0%
GGCTAACTACATGGGACAAA+TGG - chr1_2:39812670-39812689 Msa0070120:intron 45.0%
! AAGAGTGGAGAGCTTGTTCA+TGG + chr1_2:39812702-39812721 None:intergenic 45.0%
GCTCACACCACATATTGCAT+CGG - chr1_2:39812974-39812993 Msa0070120:intron 45.0%
CTCACACCACATATTGCATC+GGG - chr1_2:39812975-39812994 Msa0070120:intron 45.0%
AGTCCATAACTGATCTCGTG+GGG - chr1_2:39813265-39813284 Msa0070120:intron 45.0%
GTCCCTACCCATATGATTGA+AGG + chr1_2:39813315-39813334 None:intergenic 45.0%
CCCATATCTGTGTGATGTCA+TGG - chr1_2:39814103-39814122 Msa0070120:intron 45.0%
TATGTGTTTGGTCGGTCTTG+TGG + chr1_2:39814463-39814482 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr1_2:39814606-39814625 Msa0070120:intron 45.0%
CTTAAGGGTAAGGCCAACAA+AGG + chr1_2:39814875-39814894 None:intergenic 45.0%
!! TTGTTGGCCTTACCCTTAAG+CGG - chr1_2:39814875-39814894 Msa0070120:intron 45.0%
TCTGAACCAGTCGCATGAAT+TGG + chr1_2:39814925-39814944 None:intergenic 45.0%
CGTAACTAACTCTCGTTGGA+GGG + chr1_2:39814999-39815018 None:intergenic 45.0%
ACGTAACTAACTCTCGTTGG+AGG + chr1_2:39815000-39815019 None:intergenic 45.0%
GAGACGTAACTAACTCTCGT+TGG + chr1_2:39815003-39815022 None:intergenic 45.0%
GTTACGTCTCGATAGAATCG+GGG - chr1_2:39815013-39815032 Msa0070120:CDS 45.0%
TCTCGATAGAATCGGGGATT+AGG - chr1_2:39815019-39815038 Msa0070120:CDS 45.0%
! AGGAATCGAGGAGGGAATTT+TGG - chr1_2:39815039-39815058 Msa0070120:CDS 45.0%
! GGAATCGAGGAGGGAATTTT+GGG - chr1_2:39815040-39815059 Msa0070120:CDS 45.0%
! GAATCGAGGAGGGAATTTTG+GGG - chr1_2:39815041-39815060 Msa0070120:CDS 45.0%
! AATCGAGGAGGGAATTTTGG+GGG - chr1_2:39815042-39815061 Msa0070120:CDS 45.0%
ATTATGGAGTGGTTGTGGGT+TGG + chr1_2:39815196-39815215 None:intergenic 45.0%
! CTTGGTCAATTTTGCTACGG+TGG + chr1_2:39815409-39815428 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + chr1_2:39814606-39814625 None:intergenic 45.0%
GATGCAGACGATGAACTGTT+TGG + chr1_2:39816430-39816449 None:intergenic 45.0%
TCGTCAAGCTGCAAGATGTT+TGG - chr1_2:39816463-39816482 Msa0070120:CDS 45.0%
!! TTCGAGCATTGAGTTCTCTC+TGG - chr1_2:39816513-39816532 Msa0070120:CDS 45.0%
!! TTAAAATGATAAAATAAAAT+TGG + chr1_2:39808781-39808800 None:intergenic 5.0%
!! AAAATTAATAAAATCAAAAT+TGG + chr1_2:39809284-39809303 None:intergenic 5.0%
!!! TTTTTTATATATTTCATTTT+AGG - chr1_2:39810753-39810772 Msa0070120:intron 5.0%
!!! TTTTTATATATTTCATTTTA+GGG - chr1_2:39810754-39810773 Msa0070120:intron 5.0%
!!! ACATTTATTATATTATTTTT+TGG - chr1_2:39812437-39812456 Msa0070120:intron 5.0%
!! AAATTAATAAAAATGAAAAT+GGG + chr1_2:39812825-39812844 None:intergenic 5.0%
!! AAAATTAATAAAAATGAAAA+TGG + chr1_2:39812826-39812845 None:intergenic 5.0%
!!! TTTTTTTTCATTTTATTTTT+TGG + chr1_2:39813123-39813142 None:intergenic 5.0%
!!! AATTTAATTTTTTTTTTTTG+TGG + chr1_2:39814679-39814698 None:intergenic 5.0%
!! GGAGCCACTTGTTATTGGAG+AGG + chr1_2:39809874-39809893 None:intergenic 50.0%
AACTCCATGGACGGTTGAGA+TGG + chr1_2:39809903-39809922 None:intergenic 50.0%
ATCTCAACCGTCCATGGAGT+TGG - chr1_2:39809902-39809921 Msa0070120:intron 50.0%
! TGGTTTGCCAACTCCATGGA+CGG + chr1_2:39809912-39809931 None:intergenic 50.0%
!! TCGTTGGTTTGCCAACTCCA+TGG + chr1_2:39809916-39809935 None:intergenic 50.0%
!!! TTGACAGGTTTTGGTGGTGC+AGG + chr1_2:39809957-39809976 None:intergenic 50.0%
TGCACCACCAAAACCTGTCA+AGG - chr1_2:39809956-39809975 Msa0070120:intron 50.0%
!! CCTACCTTGACAGGTTTTGG+TGG + chr1_2:39809963-39809982 None:intergenic 50.0%
CCACCAAAACCTGTCAAGGT+AGG - chr1_2:39809960-39809979 Msa0070120:intron 50.0%
GAGAGGCAGCAAGAAAAAGC+AGG - chr1_2:39810270-39810289 Msa0070120:intron 50.0%
GGTGCAGTGAATTCCCTTAC+AGG - chr1_2:39810304-39810323 Msa0070120:intron 50.0%
AGCGTGCTAGAGCTCAAGTA+AGG - chr1_2:39810493-39810512 Msa0070120:intron 50.0%
!! AGACTGGTACCGATTCTCTG+TGG - chr1_2:39810565-39810584 Msa0070120:intron 50.0%
GTGCAGTCACCACAGAGAAT+CGG + chr1_2:39810577-39810596 None:intergenic 50.0%
CGACTCTGCAGCAGATTGTA+CGG + chr1_2:39810599-39810618 None:intergenic 50.0%
!! AATGGGAGGAGGTGCACTTT+TGG - chr1_2:39810872-39810891 Msa0070120:intron 50.0%
!! ATGGGAGGAGGTGCACTTTT+GGG - chr1_2:39810873-39810892 Msa0070120:intron 50.0%
TTGATGTGGAGTATGGGAGG+TGG - chr1_2:39811044-39811063 Msa0070120:intron 50.0%
CATGAAGCAACGTTCAGCTG+GGG + chr1_2:39811248-39811267 None:intergenic 50.0%
CACATGAAGCAACGTTCAGC+TGG + chr1_2:39811250-39811269 None:intergenic 50.0%
CAGCTGAACGTTGCTTCATG+TGG - chr1_2:39811248-39811267 Msa0070120:intron 50.0%
!! CGTTGCTTCATGTGGATTGG+TGG - chr1_2:39811256-39811275 Msa0070120:intron 50.0%
! CAAAGATTTGAGGCCAAGGG+CGG + chr1_2:39811555-39811574 None:intergenic 50.0%
GCCCTTGGCCTCAAATCTTT+GGG - chr1_2:39811554-39811573 Msa0070120:intron 50.0%
! CCCCAAAGATTTGAGGCCAA+GGG + chr1_2:39811558-39811577 None:intergenic 50.0%
CCCTTGGCCTCAAATCTTTG+GGG - chr1_2:39811555-39811574 Msa0070120:intron 50.0%
! ACCCCAAAGATTTGAGGCCA+AGG + chr1_2:39811559-39811578 None:intergenic 50.0%
!! CAGAAGAGGCACTTTCCCAA+GGG - chr1_2:39812579-39812598 Msa0070120:intron 50.0%
GTTGAGTGCATCAAGCCCTT+GGG + chr1_2:39812597-39812616 None:intergenic 50.0%
GGACATCCCGATGCAATATG+TGG + chr1_2:39812984-39813003 None:intergenic 50.0%
GATCCCCACGAGATCAGTTA+TGG + chr1_2:39813271-39813290 None:intergenic 50.0%
TAACTGATCTCGTGGGGATC+AGG - chr1_2:39813271-39813290 Msa0070120:intron 50.0%
CTAACTCTCGTTGGAGGGTT+AGG + chr1_2:39814994-39815013 None:intergenic 50.0%
GAATCGGGGATTAGGAATCG+AGG - chr1_2:39815027-39815046 Msa0070120:CDS 50.0%
CAGACAAGTGTAGCTCGGTA+TGG + chr1_2:39815328-39815347 None:intergenic 50.0%
CACTGCAGGCAGATAATCTG+AGG - chr1_2:39816402-39816421 Msa0070120:CDS 50.0%
!! GGTGGTGGTGCTACATGCAT+TGG + chr1_2:39809648-39809667 None:intergenic 55.0%
!! TTGGTGGTGCAGGTGCAGAA+GGG + chr1_2:39809947-39809966 None:intergenic 55.0%
!! TTTGGTGGTGCAGGTGCAGA+AGG + chr1_2:39809948-39809967 None:intergenic 55.0%
TAGGGCGTGTTAATGGGAGG+AGG - chr1_2:39810861-39810880 Msa0070120:intron 55.0%
!! GCACTTTTGGGAGGAGACCA+AGG - chr1_2:39810885-39810904 Msa0070120:intron 55.0%
GGAGTATGGGAGGTGGTTAG+AGG - chr1_2:39811051-39811070 Msa0070120:intron 55.0%
!! GGTGGTTAGAGGAGCATCAC+AGG - chr1_2:39811062-39811081 Msa0070120:intron 55.0%
ATTGCCGTTACAGTCAGGGC+CGG - chr1_2:39811359-39811378 Msa0070120:intron 55.0%
! CAAAGATTTAGGGCCCTGGG+CGG + chr1_2:39811410-39811429 None:intergenic 55.0%
GCCCAGGGCCCTAAATCTTT+GGG - chr1_2:39811409-39811428 Msa0070120:intron 55.0%
! CCCCAAAGATTTAGGGCCCT+GGG + chr1_2:39811413-39811432 None:intergenic 55.0%
CCCAGGGCCCTAAATCTTTG+GGG - chr1_2:39811410-39811429 Msa0070120:intron 55.0%
! ACCCCAAAGATTTAGGGCCC+TGG + chr1_2:39811414-39811433 None:intergenic 55.0%
CGCCCTTGGCCTCAAATCTT+TGG - chr1_2:39811553-39811572 Msa0070120:intron 55.0%
!! GCAGAAGAGGCACTTTCCCA+AGG - chr1_2:39812578-39812597 Msa0070120:intron 55.0%
GGTTGAGTGCATCAAGCCCT+TGG + chr1_2:39812598-39812617 None:intergenic 55.0%
TGATCTCGTGGGGATCAGGT+AGG - chr1_2:39813275-39813294 Msa0070120:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr1_2:39816083-39816102 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr1_2:39814601-39814620 Msa0070120:intron 55.0%
GTTGGAGGGTTAGGTCCTGA+TGG + chr1_2:39814985-39815004 None:intergenic 55.0%
TCGGGGATTAGGAATCGAGG+AGG - chr1_2:39815030-39815049 Msa0070120:CDS 55.0%
CGGGGATTAGGAATCGAGGA+GGG - chr1_2:39815031-39815050 Msa0070120:CDS 55.0%
AAGATCCGGTGTTCGAACGC+CGG + chr1_2:39816040-39816059 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr1_2:39814601-39814620 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr1_2:39816083-39816102 Msa0070120:intron 55.0%
CTGAGCTAAGCTCACGAGGA+TGG - chr1_2:39816087-39816106 Msa0070120:intron 55.0%
!! GGAGGAGGTGCACTTTTGGG+AGG - chr1_2:39810876-39810895 Msa0070120:intron 60.0%
AGCTCACCTTGCACGCCCAT+CGG + chr1_2:39811386-39811405 None:intergenic 60.0%
CGCCCAGGGCCCTAAATCTT+TGG - chr1_2:39811408-39811427 Msa0070120:intron 60.0%
GATGCCGTTACGGTTAGCGC+CGG - chr1_2:39811504-39811523 Msa0070120:intron 60.0%
GCTCACCTTGCACGCCCATT+GGG + chr1_2:39811530-39811549 None:intergenic 60.0%
! AGATTTGAGGCCAAGGGCGG+TGG + chr1_2:39811552-39811571 None:intergenic 60.0%
GTCAGGGCCGCTTAAGGGTA+AGG + chr1_2:39814885-39814904 None:intergenic 60.0%
CGGTTGTCAGGGCCGCTTAA+GGG + chr1_2:39814890-39814909 None:intergenic 60.0%
TCGGTTGTCAGGGCCGCTTA+AGG + chr1_2:39814891-39814910 None:intergenic 60.0%
GCTCACCTTGCACGCCCATC+GGG + chr1_2:39811385-39811404 None:intergenic 65.0%
TGCAAGGTGAGCTACCGCCC+AGG - chr1_2:39811393-39811412 Msa0070120:intron 65.0%
GCAAGGTGAGCTACCGCCCA+GGG - chr1_2:39811394-39811413 Msa0070120:intron 65.0%
TGGGCCGGCGCTAACCGTAA+CGG + chr1_2:39811511-39811530 None:intergenic 65.0%
!! TACGGTTAGCGCCGGCCCAA+TGG - chr1_2:39811512-39811531 Msa0070120:intron 65.0%
!! ACGGTTAGCGCCGGCCCAAT+GGG - chr1_2:39811513-39811532 Msa0070120:intron 65.0%
ACCTTGCACGCCCATTGGGC+CGG + chr1_2:39811526-39811545 None:intergenic 65.0%
GGCTCACCTTGCACGCCCAT+TGG + chr1_2:39811531-39811550 None:intergenic 65.0%
CGGGCCGGCCCTGACTGTAA+CGG + chr1_2:39811366-39811385 None:intergenic 70.0%
TACAGTCAGGGCCGGCCCGA+TGG - chr1_2:39811367-39811386 Msa0070120:intron 70.0%
ACAGTCAGGGCCGGCCCGAT+GGG - chr1_2:39811368-39811387 Msa0070120:intron 70.0%
ACCTTGCACGCCCATCGGGC+CGG + chr1_2:39811381-39811400 None:intergenic 70.0%
GCAAGGTGAGCCACCGCCCT+TGG - chr1_2:39811539-39811558 Msa0070120:intron 70.0%
GGTGGCCGGCGTTCGAACAC+CGG - chr1_2:39816032-39816051 Msa0070120:CDS 70.0%
GCCGGCCCAATGGGCGTGCA+AGG - chr1_2:39811522-39811541 Msa0070120:intron 75.0%
! GCCGGCCCGATGGGCGTGCA+AGG - chr1_2:39811377-39811396 Msa0070120:intron 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 39808360 39816559 39808360 ID=Msa0070120;Name=Msa0070120
chr1_2 mRNA 39808360 39816559 39808360 ID=Msa0070120-mRNA-1;Parent=Msa0070120;Name=Msa0070120-mRNA-1;_AED=0.15;_eAED=0.16;_QI=0|0|0|1|1|1|12|0|537
chr1_2 exon 39816282 39816559 39816282 ID=Msa0070120-mRNA-1:exon:12253;Parent=Msa0070120-mRNA-1
chr1_2 exon 39815949 39816055 39815949 ID=Msa0070120-mRNA-1:exon:12252;Parent=Msa0070120-mRNA-1
chr1_2 exon 39815239 39815333 39815239 ID=Msa0070120-mRNA-1:exon:12251;Parent=Msa0070120-mRNA-1
chr1_2 exon 39814942 39815064 39814942 ID=Msa0070120-mRNA-1:exon:12250;Parent=Msa0070120-mRNA-1
chr1_2 exon 39814753 39814821 39814753 ID=Msa0070120-mRNA-1:exon:12249;Parent=Msa0070120-mRNA-1
chr1_2 exon 39814615 39814674 39814615 ID=Msa0070120-mRNA-1:exon:12248;Parent=Msa0070120-mRNA-1
chr1_2 exon 39814410 39814487 39814410 ID=Msa0070120-mRNA-1:exon:12247;Parent=Msa0070120-mRNA-1
chr1_2 exon 39813980 39814055 39813980 ID=Msa0070120-mRNA-1:exon:12246;Parent=Msa0070120-mRNA-1
chr1_2 exon 39813616 39813887 39813616 ID=Msa0070120-mRNA-1:exon:12245;Parent=Msa0070120-mRNA-1
chr1_2 exon 39813376 39813441 39813376 ID=Msa0070120-mRNA-1:exon:12244;Parent=Msa0070120-mRNA-1
chr1_2 exon 39812180 39812419 39812180 ID=Msa0070120-mRNA-1:exon:12243;Parent=Msa0070120-mRNA-1
chr1_2 exon 39808360 39808509 39808360 ID=Msa0070120-mRNA-1:exon:12242;Parent=Msa0070120-mRNA-1
chr1_2 CDS 39816282 39816559 39816282 ID=Msa0070120-mRNA-1:cds;Parent=Msa0070120-mRNA-1
chr1_2 CDS 39815949 39816055 39815949 ID=Msa0070120-mRNA-1:cds;Parent=Msa0070120-mRNA-1
chr1_2 CDS 39815239 39815333 39815239 ID=Msa0070120-mRNA-1:cds;Parent=Msa0070120-mRNA-1
chr1_2 CDS 39814942 39815064 39814942 ID=Msa0070120-mRNA-1:cds;Parent=Msa0070120-mRNA-1
chr1_2 CDS 39814753 39814821 39814753 ID=Msa0070120-mRNA-1:cds;Parent=Msa0070120-mRNA-1
chr1_2 CDS 39814615 39814674 39814615 ID=Msa0070120-mRNA-1:cds;Parent=Msa0070120-mRNA-1
chr1_2 CDS 39814410 39814487 39814410 ID=Msa0070120-mRNA-1:cds;Parent=Msa0070120-mRNA-1
chr1_2 CDS 39813980 39814055 39813980 ID=Msa0070120-mRNA-1:cds;Parent=Msa0070120-mRNA-1
chr1_2 CDS 39813616 39813887 39813616 ID=Msa0070120-mRNA-1:cds;Parent=Msa0070120-mRNA-1
chr1_2 CDS 39813376 39813441 39813376 ID=Msa0070120-mRNA-1:cds;Parent=Msa0070120-mRNA-1
chr1_2 CDS 39812180 39812419 39812180 ID=Msa0070120-mRNA-1:cds;Parent=Msa0070120-mRNA-1
chr1_2 CDS 39808360 39808509 39808360 ID=Msa0070120-mRNA-1:cds;Parent=Msa0070120-mRNA-1
Gene Sequence

>Msa0070120

ATGGGGTTTTCTTTGGCTTTTGAAGAAGCTGAACAACAAGACCAAGTAGATGCAAGTTTTTTAGGTACCAATAATAACAATTCTATGCTCATGGCTTCCAAAAACTCACATGAATCTCAACATGAATCTCTTCAACAACAACAACAAAACCATCAAAATCTTCTTCATCATCACCAACAACAACAGAATCAACATCATCCTCATCATATGCATGACCATCAAATTTCTTTTGGAATGATGCCATCTTCATCTTCATCCTCTATGCCTAGCAACTACTTAAGCAAAGATTCAAGTGCTTATGATTTAGGTGAATTGGATCAAGCATTTTTTTTGTATCTAGATGGACAAGCACAAGCTGATCCCTCTAGTGTTCAAGATCAAAGACAGAACTCATCATCATCAGGAATGAAGCCACCACCAACTCTTAACATTTTCCCATCTCAACCAATGCATGTAGCACCACCACCATCTAATTCAAAGGTTAGCATGGGATTAACCTCTCCAATAACAAGTGGCTCCAAAAAACCATCTCAACCGTCCATGGAGTTGGCAAACCAACGAAATGAAAACCCTTCTGCACCTGCACCACCAAAACCTGTCAAGAAAGAGAATAATCGCAAGGCTACAACTTCAAGTTCTGAACATGAAGGACCAAAAACACCAGATCCTAAGACTCTGAGAAGACTTGCTCAGAATAGAGAGGCAGCAAGAAAAAGCAGGCTTAGGAAAAAGGCTTATGTTCAGCAGCTAGAAACAAGTAGGATTAAGCTTAATCAGCTTGAACAAGAGTTACAGCGTGCTAGAGCTCAAGGCGTGTTAATGGGAGGAGGTGCACTTTTGGGAGGAGACCAAGGAATTCCAATTTCTATGAATAGTATTAGCTCAGAGGCTGCAATGTTTGATGTGGAGTATGGGAGGTGGTTAGAGGAGCATCACAGGCTAGTGTGTGAGCTAAGAGCAGCCGTAGATGAACACTTGCATGAAAATGAGCTTAGGTTATATGTGGAAAATTGTTTGGCTCACTATGATCAAGTAATTAACCTCAAAAATGTTCTAGCTAGAACAGATGTGTTCCATCTTGTTTTTGGAATGTGGAAAACCCCAGCTGAACGTTGCTTCATGTGGATTGGTGGATTCAGACCATCTGAACTCATTAAGGAATATGTGATCAAAATTGCAGTTATGATGCCGTTACGGTTAGCGCCGGCCCAATGGGCGTGCAAGATAATTGTAAGTCAAATTGAGCCTCTTACGGAGCACCAAATACTTGGTATATGTGGGTTGCAACAATCAACACAAGAGGCAGAAGAGGCACTTTCCCAAGGGCTTGATGCACTCAACCAGTCTCTTTCAGAGACTATAACATCAGACTCTTTAAGCAATCCTCCTAATATGGCTAACTACATGGGACAAATGGCTCTTGCCATGAACAAGCTCTCCACTCTTGAAAGTTTTGTGAGACAGGCAGATAATCTGAGGCACCAAACAGTTCATCGTCTGCATCAGCTGTTAACAGTTCGTCAAGCTGCAAGATGTTTGGTTGCAATGTCTGAGTACTTTCATCGTCTTCGAGCATTGAGTTCTCTCTGGTTGACCCGTCCTCGCCAAGAATAG

Protein sequence

>Msa0070120

MGFSLAFEEAEQQDQVDASFLGTNNNNSMLMASKNSHESQHESLQQQQQNHQNLLHHHQQQQNQHHPHHMHDHQISFGMMPSSSSSSMPSNYLSKDSSAYDLGELDQAFFLYLDGQAQADPSSVQDQRQNSSSSGMKPPPTLNIFPSQPMHVAPPPSNSKVSMGLTSPITSGSKKPSQPSMELANQRNENPSAPAPPKPVKKENNRKATTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRARAQGVLMGGGALLGGDQGIPISMNSISSEAAMFDVEYGRWLEEHHRLVCELRAAVDEHLHENELRLYVENCLAHYDQVINLKNVLARTDVFHLVFGMWKTPAERCFMWIGGFRPSELIKEYVIKIAVMMPLRLAPAQWACKIIVSQIEPLTEHQILGICGLQQSTQEAEEALSQGLDALNQSLSETITSDSLSNPPNMANYMGQMALAMNKLSTLESFVRQADNLRHQTVHRLHQLLTVRQAARCLVAMSEYFHRLRALSSLWLTRPRQE*