Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284440 | sp|Q03666|GSTX4_TOBAC | 54.589 | 207 | 57 | 1 | 1 | 170 | 15 | 221 | 3.37e-71 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284440 | G7LB15 | 77.184 | 206 | 11 | 1 | 1 | 170 | 14 | 219 | 9.22e-107 | 313 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0110970 | Msa1284440 | 0.814030 | 1.895423e-51 | -8.615850e-47 |
| Msa1243040 | Msa1284440 | 0.824943 | 6.138608e-54 | -8.615850e-47 |
| Msa1284440 | Msa1284450 | 0.810547 | 1.092087e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284440 | MtrunA17_Chr8g0357241 | 77.184 | 206 | 11 | 1 | 1 | 170 | 14 | 219 | 1.78e-110 | 313 |
| Msa1284440 | MtrunA17_Chr8g0357211 | 76.699 | 206 | 12 | 1 | 1 | 170 | 14 | 219 | 3.46e-109 | 310 |
| Msa1284440 | MtrunA17_Chr2g0312771 | 53.659 | 205 | 59 | 1 | 2 | 170 | 15 | 219 | 5.42e-71 | 213 |
| Msa1284440 | MtrunA17_Chr2g0312751 | 54.146 | 205 | 58 | 1 | 2 | 170 | 15 | 219 | 5.72e-71 | 213 |
| Msa1284440 | MtrunA17_Chr2g0312681 | 50.971 | 206 | 65 | 1 | 1 | 170 | 14 | 219 | 1.73e-68 | 207 |
| Msa1284440 | MtrunA17_Chr2g0312781 | 52.500 | 200 | 59 | 1 | 2 | 165 | 32 | 231 | 3.46e-67 | 204 |
| Msa1284440 | MtrunA17_Chr2g0312691 | 51.456 | 206 | 64 | 1 | 1 | 170 | 14 | 219 | 3.90e-66 | 201 |
| Msa1284440 | MtrunA17_Chr2g0312731 | 47.317 | 205 | 72 | 1 | 2 | 170 | 15 | 219 | 3.35e-62 | 191 |
| Msa1284440 | MtrunA17_Chr3g0107731 | 43.902 | 205 | 79 | 1 | 2 | 170 | 20 | 224 | 1.45e-61 | 189 |
| Msa1284440 | MtrunA17_Chr3g0107741 | 44.175 | 206 | 79 | 1 | 1 | 170 | 19 | 224 | 1.65e-61 | 189 |
| Msa1284440 | MtrunA17_Chr2g0312711 | 49.254 | 201 | 65 | 2 | 1 | 165 | 14 | 213 | 5.16e-59 | 183 |
| Msa1284440 | MtrunA17_Chr2g0312811 | 45.894 | 207 | 74 | 2 | 2 | 170 | 15 | 221 | 3.19e-57 | 178 |
| Msa1284440 | MtrunA17_Chr2g0312791 | 48.039 | 204 | 68 | 3 | 2 | 167 | 15 | 218 | 2.27e-56 | 176 |
| Msa1284440 | MtrunA17_Chr2g0312721 | 43.590 | 195 | 74 | 1 | 2 | 160 | 15 | 209 | 4.60e-50 | 160 |
| Msa1284440 | MtrunA17_Chr5g0433801 | 43.902 | 205 | 79 | 2 | 2 | 170 | 17 | 221 | 1.49e-49 | 159 |
| Msa1284440 | MtrunA17_Chr4g0069471 | 51.176 | 170 | 44 | 3 | 1 | 133 | 35 | 202 | 5.91e-49 | 157 |
| Msa1284440 | MtrunA17_Chr7g0240681 | 28.426 | 197 | 101 | 4 | 2 | 159 | 18 | 213 | 4.83e-19 | 80.5 |
| Msa1284440 | MtrunA17_Chr4g0008791 | 30.102 | 196 | 98 | 4 | 2 | 159 | 18 | 212 | 5.04e-19 | 80.5 |
| Msa1284440 | MtrunA17_Chr8g0379581 | 25.980 | 204 | 114 | 2 | 2 | 168 | 16 | 219 | 4.65e-18 | 78.2 |
| Msa1284440 | MtrunA17_Chr4g0008781 | 27.041 | 196 | 104 | 4 | 2 | 159 | 19 | 213 | 2.84e-17 | 75.9 |
| Msa1284440 | MtrunA17_Chr7g0240531 | 29.612 | 206 | 101 | 6 | 2 | 168 | 18 | 218 | 2.15e-16 | 73.6 |
| Msa1284440 | MtrunA17_Chr7g0240541 | 28.780 | 205 | 104 | 5 | 2 | 168 | 18 | 218 | 3.92e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284440 | AT1G78380.1 | 51.232 | 203 | 63 | 1 | 1 | 167 | 14 | 216 | 6.26e-67 | 203 |
| Msa1284440 | AT1G78370.1 | 50.746 | 201 | 63 | 1 | 1 | 165 | 14 | 214 | 1.89e-65 | 199 |
| Msa1284440 | AT1G17170.1 | 50.000 | 206 | 66 | 2 | 1 | 170 | 14 | 218 | 8.62e-63 | 193 |
| Msa1284440 | AT1G17180.1 | 48.544 | 206 | 70 | 1 | 1 | 170 | 14 | 219 | 1.22e-61 | 190 |
| Msa1284440 | AT1G78360.1 | 48.309 | 207 | 70 | 2 | 1 | 170 | 14 | 220 | 1.82e-61 | 189 |
| Msa1284440 | AT1G78340.1 | 48.515 | 202 | 68 | 1 | 2 | 167 | 15 | 216 | 1.67e-60 | 187 |
| Msa1284440 | AT1G78320.2 | 53.448 | 174 | 72 | 1 | 1 | 165 | 14 | 187 | 3.35e-59 | 183 |
| Msa1284440 | AT1G78320.1 | 46.269 | 201 | 72 | 1 | 1 | 165 | 14 | 214 | 1.42e-54 | 172 |
| Msa1284440 | AT1G53680.1 | 42.995 | 207 | 80 | 3 | 2 | 170 | 18 | 224 | 3.17e-54 | 171 |
| Msa1284440 | AT1G17190.1 | 42.365 | 203 | 81 | 1 | 1 | 167 | 15 | 217 | 2.19e-52 | 166 |
| Msa1284440 | AT3G43800.1 | 40.191 | 209 | 85 | 3 | 1 | 169 | 15 | 223 | 5.33e-43 | 143 |
| Msa1284440 | AT3G09270.1 | 36.000 | 175 | 73 | 3 | 2 | 137 | 17 | 191 | 8.17e-21 | 85.9 |
| Msa1284440 | AT2G29470.1 | 30.890 | 191 | 91 | 5 | 2 | 152 | 18 | 207 | 6.26e-18 | 78.2 |
| Msa1284440 | AT5G62480.3 | 30.986 | 142 | 81 | 2 | 2 | 126 | 19 | 160 | 2.39e-17 | 76.3 |
| Msa1284440 | AT5G62480.2 | 30.769 | 143 | 81 | 2 | 2 | 126 | 19 | 161 | 3.50e-17 | 75.9 |
| Msa1284440 | AT1G59670.1 | 30.769 | 208 | 99 | 5 | 4 | 166 | 19 | 226 | 1.39e-15 | 72.0 |
| Msa1284440 | AT2G29440.1 | 34.211 | 152 | 54 | 4 | 2 | 111 | 17 | 164 | 2.55e-15 | 71.2 |
| Msa1284440 | AT1G74590.1 | 24.762 | 210 | 110 | 5 | 2 | 166 | 18 | 224 | 8.11e-14 | 67.4 |
Find 27 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAGCTCAAGCAAGATTT+TGG | 0.147771 | 8_3:-26763085 | Msa1284440:CDS |
| AGGATAGCATTGGCTGAAAA+AGG | 0.234872 | 8_3:-26763250 | Msa1284440:CDS |
| CTTGGAGACGAGCCTTATTT+TGG | 0.286795 | 8_3:-26762505 | Msa1284440:CDS |
| ACAGGAATCTTCTTGTGAAT+TGG | 0.294136 | 8_3:+26763163 | None:intergenic |
| AGAGTTGATTGAAGGCTTAA+AGG | 0.308675 | 8_3:-26762542 | Msa1284440:CDS |
| GTGATGTTGGAGGGAGGATA+TGG | 0.334233 | 8_3:-26762600 | Msa1284440:CDS |
| GATTCATTTGCAAAAGCATT+TGG | 0.343663 | 8_3:+26763185 | None:intergenic |
| AAAGAGAGATGAGATTGAAT+TGG | 0.418834 | 8_3:-26762572 | Msa1284440:CDS |
| AATGTGTCACCACCAAAATA+AGG | 0.433956 | 8_3:+26762493 | None:intergenic |
| GCAAAGAAAGAGTTGATTGA+AGG | 0.446921 | 8_3:-26762550 | Msa1284440:CDS |
| TATAAAACCAACTATGAAAA+GGG | 0.461833 | 8_3:+26762446 | None:intergenic |
| TGAATGGCTTAGTATATGTT+TGG | 0.462794 | 8_3:-26763283 | None:intergenic |
| CTATAGGAAGAGGTTTGAGT+TGG | 0.462917 | 8_3:-26762287 | Msa1284440:CDS |
| GTATAAAACCAACTATGAAA+AGG | 0.463905 | 8_3:+26762445 | None:intergenic |
| AAAATGCAGGTTGGTGATGT+TGG | 0.476506 | 8_3:-26762613 | Msa1284440:intron |
| AAGGAATTAGAGAATGTGCT+TGG | 0.497037 | 8_3:-26762523 | Msa1284440:CDS |
| GGCAAAGAGATGCACGCAAA+GGG | 0.509213 | 8_3:-26762365 | Msa1284440:CDS |
| TTGTTATTAACTATAGGAAG+AGG | 0.518761 | 8_3:-26762297 | Msa1284440:CDS |
| AGGGATTAAGTATGAGTACA+AGG | 0.524364 | 8_3:-26763230 | Msa1284440:CDS |
| ATTATGCAACTTCAAAGTTG+AGG | 0.546513 | 8_3:-26762413 | Msa1284440:CDS |
| TGCAGGTTGGTGATGTTGGA+GGG | 0.552099 | 8_3:-26762609 | Msa1284440:intron |
| GGGCAAAGAGATGCACGCAA+AGG | 0.571043 | 8_3:-26762366 | Msa1284440:CDS |
| CATGAGAGCAAGGATAGCAT+TGG | 0.573949 | 8_3:-26763260 | Msa1284440:CDS |
| GTTGGAGGGAGGATATGGAC+TGG | 0.582021 | 8_3:-26762595 | Msa1284440:CDS |
| ATGCAGGTTGGTGATGTTGG+AGG | 0.585807 | 8_3:-26762610 | Msa1284440:intron |
| ATATGTTTGGCATGAGAGCA+AGG | 0.590792 | 8_3:-26763270 | Msa1284440:CDS |
| AGGTTGGTGATGTTGGAGGG+AGG | 0.678043 | 8_3:-26762606 | Msa1284440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATATTTTTATTTATTTTC+TGG | + | chr8_3:26762554-26762573 | None:intergenic | 10.0% |
| !!! | AGATATTTTTATTTATTTTC+TGG | + | chr8_3:26762554-26762573 | None:intergenic | 10.0% |
| !!! | ATGATTTTGTTATTAACTAT+AGG | - | chr8_3:26763247-26763266 | Msa1284440:CDS | 15.0% |
| !!! | ATGATTTTGTTATTAACTAT+AGG | - | chr8_3:26763247-26763266 | Msa1284440:CDS | 15.0% |
| !! | AAATGAAACTTTGAATCAAA+AGG | + | chr8_3:26762600-26762619 | None:intergenic | 20.0% |
| !! | TAATGAATTAGATAACATGA+AGG | - | chr8_3:26762660-26762679 | Msa1284440:intron | 20.0% |
| !! | AGAGAAAACAATAAAAAAGA+AGG | + | chr8_3:26762689-26762708 | None:intergenic | 20.0% |
| !!! | TTGTTTTCTCTAATATTCAA+TGG | - | chr8_3:26762698-26762717 | Msa1284440:intron | 20.0% |
| !! | TATCCATATTATTAAAGACT+AGG | - | chr8_3:26762858-26762877 | Msa1284440:intron | 20.0% |
| !! | AATGTGTTAAAAAAAAATGC+AGG | - | chr8_3:26762924-26762943 | Msa1284440:intron | 20.0% |
| !! | TATAAAACCAACTATGAAAA+GGG | + | chr8_3:26763107-26763126 | None:intergenic | 20.0% |
| !! | AAATGAAACTTTGAATCAAA+AGG | + | chr8_3:26762600-26762619 | None:intergenic | 20.0% |
| !! | TAATGAATTAGATAACATGA+AGG | - | chr8_3:26762660-26762679 | Msa1284440:intron | 20.0% |
| !! | AGAGAAAACAATAAAAAAGA+AGG | + | chr8_3:26762689-26762708 | None:intergenic | 20.0% |
| !!! | TTGTTTTCTCTAATATTCAA+TGG | - | chr8_3:26762698-26762717 | Msa1284440:intron | 20.0% |
| !! | TATCCATATTATTAAAGACT+AGG | - | chr8_3:26762858-26762877 | Msa1284440:intron | 20.0% |
| !! | AATGTGTTAAAAAAAAATGC+AGG | - | chr8_3:26762924-26762943 | Msa1284440:intron | 20.0% |
| !! | TATAAAACCAACTATGAAAA+GGG | + | chr8_3:26763107-26763126 | None:intergenic | 20.0% |
| ! | GATATACTCAACTATAATGA+TGG | + | chr8_3:26762445-26762464 | None:intergenic | 25.0% |
| !!! | ACAAAAAGGTAAGTTTTGTT+AGG | - | chr8_3:26762501-26762520 | Msa1284440:CDS | 25.0% |
| !!! | GTACTGTTTTTACTTTTGAA+TGG | - | chr8_3:26762625-26762644 | Msa1284440:intron | 25.0% |
| ! | TTTCTCTAATATTCAATGGA+TGG | - | chr8_3:26762702-26762721 | Msa1284440:intron | 25.0% |
| ! | CTTCATATTTCATCAATGAA+TGG | - | chr8_3:26762814-26762833 | Msa1284440:intron | 25.0% |
| !! | CAACCTAGTCTTTAATAATA+TGG | + | chr8_3:26762864-26762883 | None:intergenic | 25.0% |
| ! | TGTTAAAAAAAAATGCAGGT+TGG | - | chr8_3:26762928-26762947 | Msa1284440:intron | 25.0% |
| ! | GTATAAAACCAACTATGAAA+AGG | + | chr8_3:26763108-26763127 | None:intergenic | 25.0% |
| !! | TTGTTATTAACTATAGGAAG+AGG | - | chr8_3:26763253-26763272 | Msa1284440:CDS | 25.0% |
| ! | GATATACTCAACTATAATGA+TGG | + | chr8_3:26762445-26762464 | None:intergenic | 25.0% |
| !!! | ACAAAAAGGTAAGTTTTGTT+AGG | - | chr8_3:26762501-26762520 | Msa1284440:CDS | 25.0% |
| !!! | GTACTGTTTTTACTTTTGAA+TGG | - | chr8_3:26762625-26762644 | Msa1284440:intron | 25.0% |
| ! | TTTCTCTAATATTCAATGGA+TGG | - | chr8_3:26762702-26762721 | Msa1284440:intron | 25.0% |
| ! | CTTCATATTTCATCAATGAA+TGG | - | chr8_3:26762814-26762833 | Msa1284440:intron | 25.0% |
| !! | CAACCTAGTCTTTAATAATA+TGG | + | chr8_3:26762864-26762883 | None:intergenic | 25.0% |
| ! | TGTTAAAAAAAAATGCAGGT+TGG | - | chr8_3:26762928-26762947 | Msa1284440:intron | 25.0% |
| ! | GTATAAAACCAACTATGAAA+AGG | + | chr8_3:26763108-26763127 | None:intergenic | 25.0% |
| !! | TTGTTATTAACTATAGGAAG+AGG | - | chr8_3:26763253-26763272 | Msa1284440:CDS | 25.0% |
| !! | GATTCATTTGCAAAAGCATT+TGG | + | chr8_3:26762368-26762387 | None:intergenic | 30.0% |
| ATTCCTGTTCTTATCCATTA+GGG | - | chr8_3:26762402-26762421 | Msa1284440:CDS | 30.0% | |
| !! | ATAATGATGGACTCAGAAAT+TGG | + | chr8_3:26762432-26762451 | None:intergenic | 30.0% |
| !!! | GTAAGTTTTGTTAGGTACTA+AGG | - | chr8_3:26762509-26762528 | Msa1284440:CDS | 30.0% |
| AAAGAGAGATGAGATTGAAT+TGG | - | chr8_3:26762978-26762997 | Msa1284440:intron | 30.0% | |
| ATTATGCAACTTCAAAGTTG+AGG | - | chr8_3:26763137-26763156 | Msa1284440:intron | 30.0% | |
| !! | GATTCATTTGCAAAAGCATT+TGG | + | chr8_3:26762368-26762387 | None:intergenic | 30.0% |
| ATTCCTGTTCTTATCCATTA+GGG | - | chr8_3:26762402-26762421 | Msa1284440:CDS | 30.0% | |
| !! | ATAATGATGGACTCAGAAAT+TGG | + | chr8_3:26762432-26762451 | None:intergenic | 30.0% |
| !!! | GTAAGTTTTGTTAGGTACTA+AGG | - | chr8_3:26762509-26762528 | Msa1284440:CDS | 30.0% |
| AAAGAGAGATGAGATTGAAT+TGG | - | chr8_3:26762978-26762997 | Msa1284440:intron | 30.0% | |
| ATTATGCAACTTCAAAGTTG+AGG | - | chr8_3:26763137-26763156 | Msa1284440:intron | 30.0% | |
| AGGGATTAAGTATGAGTACA+AGG | - | chr8_3:26762320-26762339 | Msa1284440:CDS | 35.0% | |
| ACAGGAATCTTCTTGTGAAT+TGG | + | chr8_3:26762390-26762409 | None:intergenic | 35.0% | |
| GATTCCTGTTCTTATCCATT+AGG | - | chr8_3:26762401-26762420 | Msa1284440:CDS | 35.0% | |
| ! | TTTCCCTAATGGATAAGAAC+AGG | + | chr8_3:26762408-26762427 | None:intergenic | 35.0% |
| !!! | CAGAAATTGGTTTTCCCTAA+TGG | + | chr8_3:26762419-26762438 | None:intergenic | 35.0% |
| ! | AGAAAGCTCAAGCAAGATTT+TGG | - | chr8_3:26762465-26762484 | Msa1284440:CDS | 35.0% |
| ! | GAAAGCTCAAGCAAGATTTT+GGG | - | chr8_3:26762466-26762485 | Msa1284440:CDS | 35.0% |
| !! | GGCTGATTTTGTCAACAAAA+AGG | - | chr8_3:26762487-26762506 | Msa1284440:CDS | 35.0% |
| ATACTCATATCTCACTAGGA+AGG | + | chr8_3:26762784-26762803 | None:intergenic | 35.0% | |
| TCCTAGTGAGATATGAGTAT+AGG | - | chr8_3:26762784-26762803 | Msa1284440:intron | 35.0% | |
| TCCTATACTCATATCTCACT+AGG | + | chr8_3:26762788-26762807 | None:intergenic | 35.0% | |
| ! | GCAAAGAAAGAGTTGATTGA+AGG | - | chr8_3:26763000-26763019 | Msa1284440:intron | 35.0% |
| ! | AGAGTTGATTGAAGGCTTAA+AGG | - | chr8_3:26763008-26763027 | Msa1284440:intron | 35.0% |
| AAGGAATTAGAGAATGTGCT+TGG | - | chr8_3:26763027-26763046 | Msa1284440:intron | 35.0% | |
| AATGTGTCACCACCAAAATA+AGG | + | chr8_3:26763060-26763079 | None:intergenic | 35.0% | |
| !!! | TATTTTGGTGGTGACACATT+TGG | - | chr8_3:26763060-26763079 | Msa1284440:intron | 35.0% |
| !!! | ATTTTGGTGGTGACACATTT+GGG | - | chr8_3:26763061-26763080 | Msa1284440:intron | 35.0% |
| ! | CTTTGATCCCTTTTCATAGT+TGG | - | chr8_3:26763097-26763116 | Msa1284440:intron | 35.0% |
| AGTGTGAAAAACTGATTGCT+TGG | - | chr8_3:26763163-26763182 | Msa1284440:intron | 35.0% | |
| GTGTGAAAAACTGATTGCTT+GGG | - | chr8_3:26763164-26763183 | Msa1284440:intron | 35.0% | |
| AGGGATTAAGTATGAGTACA+AGG | - | chr8_3:26762320-26762339 | Msa1284440:CDS | 35.0% | |
| ACAGGAATCTTCTTGTGAAT+TGG | + | chr8_3:26762390-26762409 | None:intergenic | 35.0% | |
| GATTCCTGTTCTTATCCATT+AGG | - | chr8_3:26762401-26762420 | Msa1284440:CDS | 35.0% | |
| ! | TTTCCCTAATGGATAAGAAC+AGG | + | chr8_3:26762408-26762427 | None:intergenic | 35.0% |
| !!! | CAGAAATTGGTTTTCCCTAA+TGG | + | chr8_3:26762419-26762438 | None:intergenic | 35.0% |
| ! | AGAAAGCTCAAGCAAGATTT+TGG | - | chr8_3:26762465-26762484 | Msa1284440:CDS | 35.0% |
| ! | GAAAGCTCAAGCAAGATTTT+GGG | - | chr8_3:26762466-26762485 | Msa1284440:CDS | 35.0% |
| !! | GGCTGATTTTGTCAACAAAA+AGG | - | chr8_3:26762487-26762506 | Msa1284440:CDS | 35.0% |
| ATACTCATATCTCACTAGGA+AGG | + | chr8_3:26762784-26762803 | None:intergenic | 35.0% | |
| TCCTAGTGAGATATGAGTAT+AGG | - | chr8_3:26762784-26762803 | Msa1284440:intron | 35.0% | |
| TCCTATACTCATATCTCACT+AGG | + | chr8_3:26762788-26762807 | None:intergenic | 35.0% | |
| ! | GCAAAGAAAGAGTTGATTGA+AGG | - | chr8_3:26763000-26763019 | Msa1284440:intron | 35.0% |
| ! | AGAGTTGATTGAAGGCTTAA+AGG | - | chr8_3:26763008-26763027 | Msa1284440:intron | 35.0% |
| AAGGAATTAGAGAATGTGCT+TGG | - | chr8_3:26763027-26763046 | Msa1284440:intron | 35.0% | |
| AATGTGTCACCACCAAAATA+AGG | + | chr8_3:26763060-26763079 | None:intergenic | 35.0% | |
| !!! | TATTTTGGTGGTGACACATT+TGG | - | chr8_3:26763060-26763079 | Msa1284440:intron | 35.0% |
| !!! | ATTTTGGTGGTGACACATTT+GGG | - | chr8_3:26763061-26763080 | Msa1284440:intron | 35.0% |
| ! | CTTTGATCCCTTTTCATAGT+TGG | - | chr8_3:26763097-26763116 | Msa1284440:intron | 35.0% |
| AGTGTGAAAAACTGATTGCT+TGG | - | chr8_3:26763163-26763182 | Msa1284440:intron | 35.0% | |
| GTGTGAAAAACTGATTGCTT+GGG | - | chr8_3:26763164-26763183 | Msa1284440:intron | 35.0% | |
| !! | AGGATAGCATTGGCTGAAAA+AGG | - | chr8_3:26762300-26762319 | Msa1284440:CDS | 40.0% |
| !! | GGATAGCATTGGCTGAAAAA+GGG | - | chr8_3:26762301-26762320 | Msa1284440:CDS | 40.0% |
| CATATCTCACTAGGAAGGAA+AGG | + | chr8_3:26762779-26762798 | None:intergenic | 40.0% | |
| !! | AAAATGCAGGTTGGTGATGT+TGG | - | chr8_3:26762937-26762956 | Msa1284440:intron | 40.0% |
| CTATAGGAAGAGGTTTGAGT+TGG | - | chr8_3:26763263-26763282 | Msa1284440:CDS | 40.0% | |
| !! | AGGATAGCATTGGCTGAAAA+AGG | - | chr8_3:26762300-26762319 | Msa1284440:CDS | 40.0% |
| !! | GGATAGCATTGGCTGAAAAA+GGG | - | chr8_3:26762301-26762320 | Msa1284440:CDS | 40.0% |
| CATATCTCACTAGGAAGGAA+AGG | + | chr8_3:26762779-26762798 | None:intergenic | 40.0% | |
| !! | AAAATGCAGGTTGGTGATGT+TGG | - | chr8_3:26762937-26762956 | Msa1284440:intron | 40.0% |
| CTATAGGAAGAGGTTTGAGT+TGG | - | chr8_3:26763263-26763282 | Msa1284440:CDS | 40.0% | |
| CATGAGAGCAAGGATAGCAT+TGG | - | chr8_3:26762290-26762309 | Msa1284440:CDS | 45.0% | |
| !!! | CTTGGAGACGAGCCTTATTT+TGG | - | chr8_3:26763045-26763064 | Msa1284440:intron | 45.0% |
| CATGAGAGCAAGGATAGCAT+TGG | - | chr8_3:26762290-26762309 | Msa1284440:CDS | 45.0% | |
| !!! | CTTGGAGACGAGCCTTATTT+TGG | - | chr8_3:26763045-26763064 | Msa1284440:intron | 45.0% |
| !! | ATGCAGGTTGGTGATGTTGG+AGG | - | chr8_3:26762940-26762959 | Msa1284440:intron | 50.0% |
| !! | TGCAGGTTGGTGATGTTGGA+GGG | - | chr8_3:26762941-26762960 | Msa1284440:intron | 50.0% |
| GTGATGTTGGAGGGAGGATA+TGG | - | chr8_3:26762950-26762969 | Msa1284440:intron | 50.0% | |
| !!! | GGAGACGAGCCTTATTTTGG+TGG | - | chr8_3:26763048-26763067 | Msa1284440:intron | 50.0% |
| GGCAAAGAGATGCACGCAAA+GGG | - | chr8_3:26763185-26763204 | Msa1284440:CDS | 50.0% | |
| !! | ATGCAGGTTGGTGATGTTGG+AGG | - | chr8_3:26762940-26762959 | Msa1284440:intron | 50.0% |
| !! | TGCAGGTTGGTGATGTTGGA+GGG | - | chr8_3:26762941-26762960 | Msa1284440:intron | 50.0% |
| GTGATGTTGGAGGGAGGATA+TGG | - | chr8_3:26762950-26762969 | Msa1284440:intron | 50.0% | |
| !!! | GGAGACGAGCCTTATTTTGG+TGG | - | chr8_3:26763048-26763067 | Msa1284440:intron | 50.0% |
| GGCAAAGAGATGCACGCAAA+GGG | - | chr8_3:26763185-26763204 | Msa1284440:CDS | 50.0% | |
| !! | AGGTTGGTGATGTTGGAGGG+AGG | - | chr8_3:26762944-26762963 | Msa1284440:intron | 55.0% |
| GTTGGAGGGAGGATATGGAC+TGG | - | chr8_3:26762955-26762974 | Msa1284440:intron | 55.0% | |
| GGGCAAAGAGATGCACGCAA+AGG | - | chr8_3:26763184-26763203 | Msa1284440:CDS | 55.0% | |
| !! | AGGTTGGTGATGTTGGAGGG+AGG | - | chr8_3:26762944-26762963 | Msa1284440:intron | 55.0% |
| GTTGGAGGGAGGATATGGAC+TGG | - | chr8_3:26762955-26762974 | Msa1284440:intron | 55.0% | |
| GGGCAAAGAGATGCACGCAA+AGG | - | chr8_3:26763184-26763203 | Msa1284440:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 26762282 | 26763290 | 26762282 | ID=Msa1284440;Name=Msa1284440 |
| chr8_3 | mRNA | 26762282 | 26763290 | 26762282 | ID=Msa1284440-mRNA-1;Parent=Msa1284440;Name=Msa1284440-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|0|0.66|3|0|170 |
| chr8_3 | exon | 26763165 | 26763290 | 26763165 | ID=Msa1284440-mRNA-1:exon:9304;Parent=Msa1284440-mRNA-1 |
| chr8_3 | exon | 26763064 | 26763105 | 26763064 | ID=Msa1284440-mRNA-1:exon:9303;Parent=Msa1284440-mRNA-1 |
| chr8_3 | exon | 26762282 | 26762626 | 26762282 | ID=Msa1284440-mRNA-1:exon:9302;Parent=Msa1284440-mRNA-1 |
| chr8_3 | CDS | 26763165 | 26763290 | 26763165 | ID=Msa1284440-mRNA-1:cds;Parent=Msa1284440-mRNA-1 |
| chr8_3 | CDS | 26763064 | 26763105 | 26763064 | ID=Msa1284440-mRNA-1:cds;Parent=Msa1284440-mRNA-1 |
| chr8_3 | CDS | 26762282 | 26762626 | 26762282 | ID=Msa1284440-mRNA-1:cds;Parent=Msa1284440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
