Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284450 | XP_003628404.1 | 77.184 | 206 | 11 | 1 | 1 | 170 | 14 | 219 | 1.93e-106 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284450 | sp|Q03666|GSTX4_TOBAC | 54.589 | 207 | 57 | 1 | 1 | 170 | 15 | 221 | 3.37e-71 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284450 | G7LB15 | 77.184 | 206 | 11 | 1 | 1 | 170 | 14 | 219 | 9.22e-107 | 313 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1243040 | Msa1284450 | 0.826889 | 2.117167e-54 | -8.615850e-47 |
| Msa1284440 | Msa1284450 | 0.810547 | 1.092087e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284450 | MtrunA17_Chr8g0357241 | 77.184 | 206 | 11 | 1 | 1 | 170 | 14 | 219 | 1.78e-110 | 313 |
| Msa1284450 | MtrunA17_Chr8g0357211 | 76.699 | 206 | 12 | 1 | 1 | 170 | 14 | 219 | 3.46e-109 | 310 |
| Msa1284450 | MtrunA17_Chr2g0312771 | 53.659 | 205 | 59 | 1 | 2 | 170 | 15 | 219 | 5.42e-71 | 213 |
| Msa1284450 | MtrunA17_Chr2g0312751 | 54.146 | 205 | 58 | 1 | 2 | 170 | 15 | 219 | 5.72e-71 | 213 |
| Msa1284450 | MtrunA17_Chr2g0312681 | 50.971 | 206 | 65 | 1 | 1 | 170 | 14 | 219 | 1.73e-68 | 207 |
| Msa1284450 | MtrunA17_Chr2g0312781 | 52.500 | 200 | 59 | 1 | 2 | 165 | 32 | 231 | 3.46e-67 | 204 |
| Msa1284450 | MtrunA17_Chr2g0312691 | 51.456 | 206 | 64 | 1 | 1 | 170 | 14 | 219 | 3.90e-66 | 201 |
| Msa1284450 | MtrunA17_Chr2g0312731 | 47.317 | 205 | 72 | 1 | 2 | 170 | 15 | 219 | 3.35e-62 | 191 |
| Msa1284450 | MtrunA17_Chr3g0107731 | 43.902 | 205 | 79 | 1 | 2 | 170 | 20 | 224 | 1.45e-61 | 189 |
| Msa1284450 | MtrunA17_Chr3g0107741 | 44.175 | 206 | 79 | 1 | 1 | 170 | 19 | 224 | 1.65e-61 | 189 |
| Msa1284450 | MtrunA17_Chr2g0312711 | 49.254 | 201 | 65 | 2 | 1 | 165 | 14 | 213 | 5.16e-59 | 183 |
| Msa1284450 | MtrunA17_Chr2g0312811 | 45.894 | 207 | 74 | 2 | 2 | 170 | 15 | 221 | 3.19e-57 | 178 |
| Msa1284450 | MtrunA17_Chr2g0312791 | 48.039 | 204 | 68 | 3 | 2 | 167 | 15 | 218 | 2.27e-56 | 176 |
| Msa1284450 | MtrunA17_Chr2g0312721 | 43.590 | 195 | 74 | 1 | 2 | 160 | 15 | 209 | 4.60e-50 | 160 |
| Msa1284450 | MtrunA17_Chr5g0433801 | 43.902 | 205 | 79 | 2 | 2 | 170 | 17 | 221 | 1.49e-49 | 159 |
| Msa1284450 | MtrunA17_Chr4g0069471 | 51.176 | 170 | 44 | 3 | 1 | 133 | 35 | 202 | 5.91e-49 | 157 |
| Msa1284450 | MtrunA17_Chr7g0240681 | 28.426 | 197 | 101 | 4 | 2 | 159 | 18 | 213 | 4.83e-19 | 80.5 |
| Msa1284450 | MtrunA17_Chr4g0008791 | 30.102 | 196 | 98 | 4 | 2 | 159 | 18 | 212 | 5.04e-19 | 80.5 |
| Msa1284450 | MtrunA17_Chr8g0379581 | 25.980 | 204 | 114 | 2 | 2 | 168 | 16 | 219 | 4.65e-18 | 78.2 |
| Msa1284450 | MtrunA17_Chr4g0008781 | 27.041 | 196 | 104 | 4 | 2 | 159 | 19 | 213 | 2.84e-17 | 75.9 |
| Msa1284450 | MtrunA17_Chr7g0240531 | 29.612 | 206 | 101 | 6 | 2 | 168 | 18 | 218 | 2.15e-16 | 73.6 |
| Msa1284450 | MtrunA17_Chr7g0240541 | 28.780 | 205 | 104 | 5 | 2 | 168 | 18 | 218 | 3.92e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284450 | AT1G78380.1 | 51.232 | 203 | 63 | 1 | 1 | 167 | 14 | 216 | 6.26e-67 | 203 |
| Msa1284450 | AT1G78370.1 | 50.746 | 201 | 63 | 1 | 1 | 165 | 14 | 214 | 1.89e-65 | 199 |
| Msa1284450 | AT1G17170.1 | 50.000 | 206 | 66 | 2 | 1 | 170 | 14 | 218 | 8.62e-63 | 193 |
| Msa1284450 | AT1G17180.1 | 48.544 | 206 | 70 | 1 | 1 | 170 | 14 | 219 | 1.22e-61 | 190 |
| Msa1284450 | AT1G78360.1 | 48.309 | 207 | 70 | 2 | 1 | 170 | 14 | 220 | 1.82e-61 | 189 |
| Msa1284450 | AT1G78340.1 | 48.515 | 202 | 68 | 1 | 2 | 167 | 15 | 216 | 1.67e-60 | 187 |
| Msa1284450 | AT1G78320.2 | 53.448 | 174 | 72 | 1 | 1 | 165 | 14 | 187 | 3.35e-59 | 183 |
| Msa1284450 | AT1G78320.1 | 46.269 | 201 | 72 | 1 | 1 | 165 | 14 | 214 | 1.42e-54 | 172 |
| Msa1284450 | AT1G53680.1 | 42.995 | 207 | 80 | 3 | 2 | 170 | 18 | 224 | 3.17e-54 | 171 |
| Msa1284450 | AT1G17190.1 | 42.365 | 203 | 81 | 1 | 1 | 167 | 15 | 217 | 2.19e-52 | 166 |
| Msa1284450 | AT3G43800.1 | 40.191 | 209 | 85 | 3 | 1 | 169 | 15 | 223 | 5.33e-43 | 143 |
| Msa1284450 | AT3G09270.1 | 36.000 | 175 | 73 | 3 | 2 | 137 | 17 | 191 | 8.17e-21 | 85.9 |
| Msa1284450 | AT2G29470.1 | 30.890 | 191 | 91 | 5 | 2 | 152 | 18 | 207 | 6.26e-18 | 78.2 |
| Msa1284450 | AT5G62480.3 | 30.986 | 142 | 81 | 2 | 2 | 126 | 19 | 160 | 2.39e-17 | 76.3 |
| Msa1284450 | AT5G62480.2 | 30.769 | 143 | 81 | 2 | 2 | 126 | 19 | 161 | 3.50e-17 | 75.9 |
| Msa1284450 | AT1G59670.1 | 30.769 | 208 | 99 | 5 | 4 | 166 | 19 | 226 | 1.39e-15 | 72.0 |
| Msa1284450 | AT2G29440.1 | 34.211 | 152 | 54 | 4 | 2 | 111 | 17 | 164 | 2.55e-15 | 71.2 |
| Msa1284450 | AT1G74590.1 | 24.762 | 210 | 110 | 5 | 2 | 166 | 18 | 224 | 8.11e-14 | 67.4 |
Find 27 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAGCTCAAGCAAGATTT+TGG | 0.147771 | 8_3:+26774682 | Msa1284450:intron |
| AGGATAGCATTGGCTGAAAA+AGG | 0.234872 | 8_3:+26774517 | Msa1284450:CDS |
| CTTGGAGACGAGCCTTATTT+TGG | 0.286795 | 8_3:+26775262 | Msa1284450:CDS |
| ACAGGAATCTTCTTGTGAAT+TGG | 0.294136 | 8_3:-26774604 | None:intergenic |
| AGAGTTGATTGAAGGCTTAA+AGG | 0.308675 | 8_3:+26775225 | Msa1284450:CDS |
| GTGATGTTGGAGGGAGGATA+TGG | 0.334233 | 8_3:+26775167 | Msa1284450:CDS |
| GATTCATTTGCAAAAGCATT+TGG | 0.343663 | 8_3:-26774582 | None:intergenic |
| AAAGAGAGATGAGATTGAAT+TGG | 0.418834 | 8_3:+26775195 | Msa1284450:CDS |
| AATGTGTCACCACCAAAATA+AGG | 0.433956 | 8_3:-26775274 | None:intergenic |
| GCAAAGAAAGAGTTGATTGA+AGG | 0.446921 | 8_3:+26775217 | Msa1284450:CDS |
| TATAAAACCAACTATGAAAA+GGG | 0.461833 | 8_3:-26775321 | None:intergenic |
| TGAATGGCTTAGTATATGTT+TGG | 0.462794 | 8_3:+26774484 | None:intergenic |
| CTATAGGAAGAGGTTTGAGT+TGG | 0.462917 | 8_3:+26775480 | Msa1284450:CDS |
| GTATAAAACCAACTATGAAA+AGG | 0.463905 | 8_3:-26775322 | None:intergenic |
| AAAATGCAGGTTGGTGATGT+TGG | 0.476506 | 8_3:+26775154 | Msa1284450:intron |
| AAGGAATTAGAGAATGTGCT+TGG | 0.497037 | 8_3:+26775244 | Msa1284450:CDS |
| GGCAAAGAGATGCACGCAAA+GGG | 0.509213 | 8_3:+26775402 | Msa1284450:CDS |
| TTGTTATTAACTATAGGAAG+AGG | 0.518761 | 8_3:+26775470 | Msa1284450:CDS |
| AGGGATTAAGTATGAGTACA+AGG | 0.524364 | 8_3:+26774537 | Msa1284450:CDS |
| ATTATGCAACTTCAAAGTTG+AGG | 0.546513 | 8_3:+26775354 | Msa1284450:CDS |
| TGCAGGTTGGTGATGTTGGA+GGG | 0.552099 | 8_3:+26775158 | Msa1284450:intron |
| GGGCAAAGAGATGCACGCAA+AGG | 0.571043 | 8_3:+26775401 | Msa1284450:CDS |
| CATGAGAGCAAGGATAGCAT+TGG | 0.573949 | 8_3:+26774507 | Msa1284450:CDS |
| GTTGGAGGGAGGATATGGAC+TGG | 0.582021 | 8_3:+26775172 | Msa1284450:CDS |
| ATGCAGGTTGGTGATGTTGG+AGG | 0.585807 | 8_3:+26775157 | Msa1284450:intron |
| ATATGTTTGGCATGAGAGCA+AGG | 0.590792 | 8_3:+26774497 | None:intergenic |
| AGGTTGGTGATGTTGGAGGG+AGG | 0.678043 | 8_3:+26775161 | Msa1284450:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATATTTTTATTTATTTTC+TGG | - | chr8_3:26774771-26774790 | None:intergenic | 10.0% |
| !!! | AGATATTTTTATTTATTTTC+TGG | - | chr8_3:26774771-26774790 | None:intergenic | 10.0% |
| !!! | ATGATTTTGTTATTAACTAT+AGG | + | chr8_3:26775464-26775483 | Msa1284450:CDS | 15.0% |
| !!! | ATGATTTTGTTATTAACTAT+AGG | + | chr8_3:26775464-26775483 | Msa1284450:CDS | 15.0% |
| !! | AAATGAAACTTTGAATCAAA+AGG | - | chr8_3:26774817-26774836 | None:intergenic | 20.0% |
| !! | TAATGAATTAGATAACATGA+AGG | + | chr8_3:26774877-26774896 | Msa1284450:intron | 20.0% |
| !! | AGAGAAAACAATAAAAAAGA+AGG | - | chr8_3:26774906-26774925 | None:intergenic | 20.0% |
| !!! | TTGTTTTCTCTAATATTCAA+TGG | + | chr8_3:26774915-26774934 | Msa1284450:intron | 20.0% |
| !! | TATCCATATTATTAAAGACT+AGG | + | chr8_3:26775075-26775094 | Msa1284450:intron | 20.0% |
| !! | AATGTGTTAAAAAAAAATGC+AGG | + | chr8_3:26775141-26775160 | Msa1284450:intron | 20.0% |
| !! | TATAAAACCAACTATGAAAA+GGG | - | chr8_3:26775324-26775343 | None:intergenic | 20.0% |
| !! | AAATGAAACTTTGAATCAAA+AGG | - | chr8_3:26774817-26774836 | None:intergenic | 20.0% |
| !! | TAATGAATTAGATAACATGA+AGG | + | chr8_3:26774877-26774896 | Msa1284450:intron | 20.0% |
| !! | AGAGAAAACAATAAAAAAGA+AGG | - | chr8_3:26774906-26774925 | None:intergenic | 20.0% |
| !!! | TTGTTTTCTCTAATATTCAA+TGG | + | chr8_3:26774915-26774934 | Msa1284450:intron | 20.0% |
| !! | TATCCATATTATTAAAGACT+AGG | + | chr8_3:26775075-26775094 | Msa1284450:intron | 20.0% |
| !! | AATGTGTTAAAAAAAAATGC+AGG | + | chr8_3:26775141-26775160 | Msa1284450:intron | 20.0% |
| !! | TATAAAACCAACTATGAAAA+GGG | - | chr8_3:26775324-26775343 | None:intergenic | 20.0% |
| ! | GATATACTCAACTATAATGA+TGG | - | chr8_3:26774662-26774681 | None:intergenic | 25.0% |
| !!! | ACAAAAAGGTAAGTTTTGTT+AGG | + | chr8_3:26774718-26774737 | Msa1284450:intron | 25.0% |
| !!! | GTACTGTTTTTACTTTTGAA+TGG | + | chr8_3:26774842-26774861 | Msa1284450:intron | 25.0% |
| ! | TTTCTCTAATATTCAATGGA+TGG | + | chr8_3:26774919-26774938 | Msa1284450:intron | 25.0% |
| ! | CTTCATATTTCATCAATGAA+TGG | + | chr8_3:26775031-26775050 | Msa1284450:intron | 25.0% |
| !! | CAACCTAGTCTTTAATAATA+TGG | - | chr8_3:26775081-26775100 | None:intergenic | 25.0% |
| ! | TGTTAAAAAAAAATGCAGGT+TGG | + | chr8_3:26775145-26775164 | Msa1284450:intron | 25.0% |
| ! | GTATAAAACCAACTATGAAA+AGG | - | chr8_3:26775325-26775344 | None:intergenic | 25.0% |
| !! | TTGTTATTAACTATAGGAAG+AGG | + | chr8_3:26775470-26775489 | Msa1284450:CDS | 25.0% |
| ! | GATATACTCAACTATAATGA+TGG | - | chr8_3:26774662-26774681 | None:intergenic | 25.0% |
| !!! | ACAAAAAGGTAAGTTTTGTT+AGG | + | chr8_3:26774718-26774737 | Msa1284450:intron | 25.0% |
| !!! | GTACTGTTTTTACTTTTGAA+TGG | + | chr8_3:26774842-26774861 | Msa1284450:intron | 25.0% |
| ! | TTTCTCTAATATTCAATGGA+TGG | + | chr8_3:26774919-26774938 | Msa1284450:intron | 25.0% |
| ! | CTTCATATTTCATCAATGAA+TGG | + | chr8_3:26775031-26775050 | Msa1284450:intron | 25.0% |
| !! | CAACCTAGTCTTTAATAATA+TGG | - | chr8_3:26775081-26775100 | None:intergenic | 25.0% |
| ! | TGTTAAAAAAAAATGCAGGT+TGG | + | chr8_3:26775145-26775164 | Msa1284450:intron | 25.0% |
| ! | GTATAAAACCAACTATGAAA+AGG | - | chr8_3:26775325-26775344 | None:intergenic | 25.0% |
| !! | TTGTTATTAACTATAGGAAG+AGG | + | chr8_3:26775470-26775489 | Msa1284450:CDS | 25.0% |
| !! | GATTCATTTGCAAAAGCATT+TGG | - | chr8_3:26774585-26774604 | None:intergenic | 30.0% |
| ATTCCTGTTCTTATCCATTA+GGG | + | chr8_3:26774619-26774638 | Msa1284450:intron | 30.0% | |
| !! | ATAATGATGGACTCAGAAAT+TGG | - | chr8_3:26774649-26774668 | None:intergenic | 30.0% |
| !!! | GTAAGTTTTGTTAGGTACTA+AGG | + | chr8_3:26774726-26774745 | Msa1284450:intron | 30.0% |
| AAAGAGAGATGAGATTGAAT+TGG | + | chr8_3:26775195-26775214 | Msa1284450:CDS | 30.0% | |
| ATTATGCAACTTCAAAGTTG+AGG | + | chr8_3:26775354-26775373 | Msa1284450:CDS | 30.0% | |
| !! | GATTCATTTGCAAAAGCATT+TGG | - | chr8_3:26774585-26774604 | None:intergenic | 30.0% |
| ATTCCTGTTCTTATCCATTA+GGG | + | chr8_3:26774619-26774638 | Msa1284450:intron | 30.0% | |
| !! | ATAATGATGGACTCAGAAAT+TGG | - | chr8_3:26774649-26774668 | None:intergenic | 30.0% |
| !!! | GTAAGTTTTGTTAGGTACTA+AGG | + | chr8_3:26774726-26774745 | Msa1284450:intron | 30.0% |
| AAAGAGAGATGAGATTGAAT+TGG | + | chr8_3:26775195-26775214 | Msa1284450:CDS | 30.0% | |
| ATTATGCAACTTCAAAGTTG+AGG | + | chr8_3:26775354-26775373 | Msa1284450:CDS | 30.0% | |
| AGGGATTAAGTATGAGTACA+AGG | + | chr8_3:26774537-26774556 | Msa1284450:CDS | 35.0% | |
| ACAGGAATCTTCTTGTGAAT+TGG | - | chr8_3:26774607-26774626 | None:intergenic | 35.0% | |
| GATTCCTGTTCTTATCCATT+AGG | + | chr8_3:26774618-26774637 | Msa1284450:intron | 35.0% | |
| ! | TTTCCCTAATGGATAAGAAC+AGG | - | chr8_3:26774625-26774644 | None:intergenic | 35.0% |
| !!! | CAGAAATTGGTTTTCCCTAA+TGG | - | chr8_3:26774636-26774655 | None:intergenic | 35.0% |
| ! | AGAAAGCTCAAGCAAGATTT+TGG | + | chr8_3:26774682-26774701 | Msa1284450:intron | 35.0% |
| ! | GAAAGCTCAAGCAAGATTTT+GGG | + | chr8_3:26774683-26774702 | Msa1284450:intron | 35.0% |
| !! | GGCTGATTTTGTCAACAAAA+AGG | + | chr8_3:26774704-26774723 | Msa1284450:CDS | 35.0% |
| ATACTCATATCTCACTAGGA+AGG | - | chr8_3:26775001-26775020 | None:intergenic | 35.0% | |
| TCCTAGTGAGATATGAGTAT+AGG | + | chr8_3:26775001-26775020 | Msa1284450:intron | 35.0% | |
| TCCTATACTCATATCTCACT+AGG | - | chr8_3:26775005-26775024 | None:intergenic | 35.0% | |
| ! | GCAAAGAAAGAGTTGATTGA+AGG | + | chr8_3:26775217-26775236 | Msa1284450:CDS | 35.0% |
| ! | AGAGTTGATTGAAGGCTTAA+AGG | + | chr8_3:26775225-26775244 | Msa1284450:CDS | 35.0% |
| AAGGAATTAGAGAATGTGCT+TGG | + | chr8_3:26775244-26775263 | Msa1284450:CDS | 35.0% | |
| AATGTGTCACCACCAAAATA+AGG | - | chr8_3:26775277-26775296 | None:intergenic | 35.0% | |
| !!! | TATTTTGGTGGTGACACATT+TGG | + | chr8_3:26775277-26775296 | Msa1284450:CDS | 35.0% |
| !!! | ATTTTGGTGGTGACACATTT+GGG | + | chr8_3:26775278-26775297 | Msa1284450:CDS | 35.0% |
| ! | CTTTGATCCCTTTTCATAGT+TGG | + | chr8_3:26775314-26775333 | Msa1284450:CDS | 35.0% |
| AGTGTGAAAAACTGATTGCT+TGG | + | chr8_3:26775380-26775399 | Msa1284450:CDS | 35.0% | |
| GTGTGAAAAACTGATTGCTT+GGG | + | chr8_3:26775381-26775400 | Msa1284450:CDS | 35.0% | |
| AGGGATTAAGTATGAGTACA+AGG | + | chr8_3:26774537-26774556 | Msa1284450:CDS | 35.0% | |
| ACAGGAATCTTCTTGTGAAT+TGG | - | chr8_3:26774607-26774626 | None:intergenic | 35.0% | |
| GATTCCTGTTCTTATCCATT+AGG | + | chr8_3:26774618-26774637 | Msa1284450:intron | 35.0% | |
| ! | TTTCCCTAATGGATAAGAAC+AGG | - | chr8_3:26774625-26774644 | None:intergenic | 35.0% |
| !!! | CAGAAATTGGTTTTCCCTAA+TGG | - | chr8_3:26774636-26774655 | None:intergenic | 35.0% |
| ! | AGAAAGCTCAAGCAAGATTT+TGG | + | chr8_3:26774682-26774701 | Msa1284450:intron | 35.0% |
| ! | GAAAGCTCAAGCAAGATTTT+GGG | + | chr8_3:26774683-26774702 | Msa1284450:intron | 35.0% |
| !! | GGCTGATTTTGTCAACAAAA+AGG | + | chr8_3:26774704-26774723 | Msa1284450:CDS | 35.0% |
| ATACTCATATCTCACTAGGA+AGG | - | chr8_3:26775001-26775020 | None:intergenic | 35.0% | |
| TCCTAGTGAGATATGAGTAT+AGG | + | chr8_3:26775001-26775020 | Msa1284450:intron | 35.0% | |
| TCCTATACTCATATCTCACT+AGG | - | chr8_3:26775005-26775024 | None:intergenic | 35.0% | |
| ! | GCAAAGAAAGAGTTGATTGA+AGG | + | chr8_3:26775217-26775236 | Msa1284450:CDS | 35.0% |
| ! | AGAGTTGATTGAAGGCTTAA+AGG | + | chr8_3:26775225-26775244 | Msa1284450:CDS | 35.0% |
| AAGGAATTAGAGAATGTGCT+TGG | + | chr8_3:26775244-26775263 | Msa1284450:CDS | 35.0% | |
| AATGTGTCACCACCAAAATA+AGG | - | chr8_3:26775277-26775296 | None:intergenic | 35.0% | |
| !!! | TATTTTGGTGGTGACACATT+TGG | + | chr8_3:26775277-26775296 | Msa1284450:CDS | 35.0% |
| !!! | ATTTTGGTGGTGACACATTT+GGG | + | chr8_3:26775278-26775297 | Msa1284450:CDS | 35.0% |
| ! | CTTTGATCCCTTTTCATAGT+TGG | + | chr8_3:26775314-26775333 | Msa1284450:CDS | 35.0% |
| AGTGTGAAAAACTGATTGCT+TGG | + | chr8_3:26775380-26775399 | Msa1284450:CDS | 35.0% | |
| GTGTGAAAAACTGATTGCTT+GGG | + | chr8_3:26775381-26775400 | Msa1284450:CDS | 35.0% | |
| !! | AGGATAGCATTGGCTGAAAA+AGG | + | chr8_3:26774517-26774536 | Msa1284450:CDS | 40.0% |
| !! | GGATAGCATTGGCTGAAAAA+GGG | + | chr8_3:26774518-26774537 | Msa1284450:CDS | 40.0% |
| CATATCTCACTAGGAAGGAA+AGG | - | chr8_3:26774996-26775015 | None:intergenic | 40.0% | |
| !! | AAAATGCAGGTTGGTGATGT+TGG | + | chr8_3:26775154-26775173 | Msa1284450:intron | 40.0% |
| CTATAGGAAGAGGTTTGAGT+TGG | + | chr8_3:26775480-26775499 | Msa1284450:CDS | 40.0% | |
| !! | AGGATAGCATTGGCTGAAAA+AGG | + | chr8_3:26774517-26774536 | Msa1284450:CDS | 40.0% |
| !! | GGATAGCATTGGCTGAAAAA+GGG | + | chr8_3:26774518-26774537 | Msa1284450:CDS | 40.0% |
| CATATCTCACTAGGAAGGAA+AGG | - | chr8_3:26774996-26775015 | None:intergenic | 40.0% | |
| !! | AAAATGCAGGTTGGTGATGT+TGG | + | chr8_3:26775154-26775173 | Msa1284450:intron | 40.0% |
| CTATAGGAAGAGGTTTGAGT+TGG | + | chr8_3:26775480-26775499 | Msa1284450:CDS | 40.0% | |
| CATGAGAGCAAGGATAGCAT+TGG | + | chr8_3:26774507-26774526 | Msa1284450:CDS | 45.0% | |
| !!! | CTTGGAGACGAGCCTTATTT+TGG | + | chr8_3:26775262-26775281 | Msa1284450:CDS | 45.0% |
| CATGAGAGCAAGGATAGCAT+TGG | + | chr8_3:26774507-26774526 | Msa1284450:CDS | 45.0% | |
| !!! | CTTGGAGACGAGCCTTATTT+TGG | + | chr8_3:26775262-26775281 | Msa1284450:CDS | 45.0% |
| !! | ATGCAGGTTGGTGATGTTGG+AGG | + | chr8_3:26775157-26775176 | Msa1284450:intron | 50.0% |
| !! | TGCAGGTTGGTGATGTTGGA+GGG | + | chr8_3:26775158-26775177 | Msa1284450:intron | 50.0% |
| GTGATGTTGGAGGGAGGATA+TGG | + | chr8_3:26775167-26775186 | Msa1284450:CDS | 50.0% | |
| !!! | GGAGACGAGCCTTATTTTGG+TGG | + | chr8_3:26775265-26775284 | Msa1284450:CDS | 50.0% |
| GGCAAAGAGATGCACGCAAA+GGG | + | chr8_3:26775402-26775421 | Msa1284450:CDS | 50.0% | |
| !! | ATGCAGGTTGGTGATGTTGG+AGG | + | chr8_3:26775157-26775176 | Msa1284450:intron | 50.0% |
| !! | TGCAGGTTGGTGATGTTGGA+GGG | + | chr8_3:26775158-26775177 | Msa1284450:intron | 50.0% |
| GTGATGTTGGAGGGAGGATA+TGG | + | chr8_3:26775167-26775186 | Msa1284450:CDS | 50.0% | |
| !!! | GGAGACGAGCCTTATTTTGG+TGG | + | chr8_3:26775265-26775284 | Msa1284450:CDS | 50.0% |
| GGCAAAGAGATGCACGCAAA+GGG | + | chr8_3:26775402-26775421 | Msa1284450:CDS | 50.0% | |
| !! | AGGTTGGTGATGTTGGAGGG+AGG | + | chr8_3:26775161-26775180 | Msa1284450:intron | 55.0% |
| GTTGGAGGGAGGATATGGAC+TGG | + | chr8_3:26775172-26775191 | Msa1284450:CDS | 55.0% | |
| GGGCAAAGAGATGCACGCAA+AGG | + | chr8_3:26775401-26775420 | Msa1284450:CDS | 55.0% | |
| !! | AGGTTGGTGATGTTGGAGGG+AGG | + | chr8_3:26775161-26775180 | Msa1284450:intron | 55.0% |
| GTTGGAGGGAGGATATGGAC+TGG | + | chr8_3:26775172-26775191 | Msa1284450:CDS | 55.0% | |
| GGGCAAAGAGATGCACGCAA+AGG | + | chr8_3:26775401-26775420 | Msa1284450:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 26774499 | 26775507 | 26774499 | ID=Msa1284450;Name=Msa1284450 |
| chr8_3 | mRNA | 26774499 | 26775507 | 26774499 | ID=Msa1284450-mRNA-1;Parent=Msa1284450;Name=Msa1284450-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|0|0.66|3|0|170 |
| chr8_3 | exon | 26774499 | 26774624 | 26774499 | ID=Msa1284450-mRNA-1:exon:9270;Parent=Msa1284450-mRNA-1 |
| chr8_3 | exon | 26774684 | 26774725 | 26774684 | ID=Msa1284450-mRNA-1:exon:9271;Parent=Msa1284450-mRNA-1 |
| chr8_3 | exon | 26775163 | 26775507 | 26775163 | ID=Msa1284450-mRNA-1:exon:9272;Parent=Msa1284450-mRNA-1 |
| chr8_3 | CDS | 26774499 | 26774624 | 26774499 | ID=Msa1284450-mRNA-1:cds;Parent=Msa1284450-mRNA-1 |
| chr8_3 | CDS | 26774684 | 26774725 | 26774684 | ID=Msa1284450-mRNA-1:cds;Parent=Msa1284450-mRNA-1 |
| chr8_3 | CDS | 26775163 | 26775507 | 26775163 | ID=Msa1284450-mRNA-1:cds;Parent=Msa1284450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
