AlfalfaGEDB | Msa1243040

M. sativa cultivar zhongmu-4 / Msa1243040

KEGG: K00799
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006518 GO:0006575 GO:0006725 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009628 GO:0009635 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016740 GO:0016765 GO:0018973 GO:0018974 GO:0019326 GO:0019439 GO:0019748 GO:0019899 GO:0031090 GO:0031668 GO:0033218 GO:0033554 GO:0034641 GO:0042221 GO:0042277 GO:0042537 GO:0042631 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046256 GO:0046260 GO:0046263 GO:0046686 GO:0048037 GO:0048046 GO:0048583 GO:0050789 GO:0050896 GO:0051186 GO:0051716 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071944 GO:0072341 GO:0072490 GO:0072491 GO:0080167 GO:0098588 GO:0098754 GO:0098805 GO:0104004 GO:1900750 GO:1901360 GO:1901361 GO:1901564 GO:1901575 GO:1901681 GO:1901700 GO:1901701 GO:2000030
PFAM: PF02798.23

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1243040	XP_003628404.1	84.951	206	10	1	1	185	14	219	1.62e-120	350

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1243040	sp\|Q03666\|GSTX4_TOBAC	60.386	207	60	1	1	185	15	221	1.42e-82	246

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1243040	G7LB15	84.951	206	10	1	1	185	14	219	7.72e-121	350

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008340	Msa1243040	0.833069	6.589039e-56	-8.615850e-47
Msa0016670	Msa1243040	0.808639	2.805902e-50	-8.615850e-47
Msa0032370	Msa1243040	0.811081	8.368651e-51	-8.615850e-47
Msa0032840	Msa1243040	-0.812918	3.328207e-51	-8.615850e-47
Msa0044020	Msa1243040	0.802227	6.199570e-49	-8.615850e-47
Msa0090590	Msa1243040	0.806645	7.439617e-50	-8.615850e-47
Msa0105420	Msa1243040	0.809542	1.797725e-50	-8.615850e-47
Msa0110970	Msa1243040	0.826849	2.164293e-54	-8.615850e-47
Msa0114540	Msa1243040	-0.841497	4.583531e-58	-8.615850e-47
Msa0618040	Msa1243040	0.805497	1.297424e-49	-8.615850e-47
Msa0670980	Msa1243040	0.801801	7.586296e-49	-8.615850e-47
Msa0754720	Msa1243040	-0.804697	1.907140e-49	-8.615850e-47
Msa0793720	Msa1243040	0.803065	4.163337e-49	-8.615850e-47
Msa0124340	Msa1243040	0.828073	1.101094e-54	-8.615850e-47
Msa0148100	Msa1243040	0.800856	1.184334e-48	-8.615850e-47
Msa0183830	Msa1243040	0.807713	4.419798e-50	-8.615850e-47
Msa0222920	Msa1243040	0.830654	2.599834e-55	-8.615850e-47
Msa0227510	Msa1243040	0.808500	3.003812e-50	-8.615850e-47
Msa0230550	Msa1243040	-0.802439	5.606164e-49	-8.615850e-47
Msa1243010	Msa1243040	0.836623	8.397661e-57	-8.615850e-47
Msa1243040	Msa1252190	0.815050	1.127639e-51	-8.615850e-47
Msa1243040	Msa1274060	0.801249	9.841427e-49	-8.615850e-47
Msa1243040	Msa1283990	0.831792	1.365154e-55	-8.615850e-47
Msa1243040	Msa1284440	0.824943	6.138608e-54	-8.615850e-47
Msa1243040	Msa1284450	0.826889	2.117167e-54	-8.615850e-47
Msa1243040	Msa1284490	0.805290	1.433680e-49	-8.615850e-47
Msa1243040	Msa1285730	0.833641	4.745911e-56	-8.615850e-47
Msa1243040	Msa1323950	0.831280	1.825856e-55	-8.615850e-47
Msa1243040	Msa1337730	0.800299	1.538071e-48	-8.615850e-47
Msa1243040	Msa1351450	0.834434	3.003810e-56	-8.615850e-47
Msa1243040	Msa1364470	-0.804486	2.110495e-49	-8.615850e-47
Msa1243040	Msa1373330	0.855446	6.274374e-62	-8.615850e-47
Msa1243040	Msa1408790	0.808163	3.545449e-50	-8.615850e-47
Msa1243040	Msa1436040	0.800943	1.137072e-48	-8.615850e-47
Msa1243040	Msa1459180	0.825993	3.461743e-54	-8.615850e-47
Msa1243040	Msa1466460	0.820939	5.263173e-53	-8.615850e-47
Msa0369850	Msa1243040	0.802011	6.868134e-49	-8.615850e-47
Msa0402330	Msa1243040	0.804644	1.956864e-49	-8.615850e-47
Msa0410500	Msa1243040	0.800321	1.522421e-48	-8.615850e-47
Msa0414950	Msa1243040	-0.806261	8.963496e-50	-8.615850e-47
Msa0423900	Msa1243040	0.805496	1.297817e-49	-8.615850e-47
Msa0449830	Msa1243040	0.808790	2.605277e-50	-8.615850e-47
Msa0452960	Msa1243040	0.832892	7.293419e-56	-8.615850e-47
Msa0993530	Msa1243040	0.803600	3.226799e-49	-8.615850e-47
Msa0996080	Msa1243040	0.812210	4.755418e-51	-8.615850e-47
Msa1040120	Msa1243040	0.803917	2.773433e-49	-8.615850e-47
Msa1087470	Msa1243040	0.804584	2.013615e-49	-8.615850e-47
Msa1097640	Msa1243040	0.812764	3.598182e-51	-8.615850e-47
Msa0264350	Msa1243040	0.805663	1.197587e-49	-8.615850e-47
Msa0299890	Msa1243040	0.808820	2.565954e-50	-8.615850e-47
Msa0316850	Msa1243040	0.813288	2.761361e-51	-8.615850e-47
Msa0334040	Msa1243040	0.829478	5.035013e-55	-8.615850e-47
Msa0335040	Msa1243040	0.805384	1.370345e-49	-8.615850e-47
Msa0355270	Msa1243040	0.811498	6.793372e-51	-8.615850e-47
Msa1139810	Msa1243040	0.806832	6.791080e-50	-8.615850e-47
Msa1179940	Msa1243040	0.801086	1.062832e-48	-8.615850e-47
Msa1179970	Msa1243040	0.800311	1.529989e-48	-8.615850e-47
Msa1185540	Msa1243040	0.818853	1.578049e-52	-8.615850e-47
Msa0485990	Msa1243040	0.805986	1.024205e-49	-8.615850e-47
Msa0521880	Msa1243040	0.810070	1.383545e-50	-8.615850e-47
Msa0574890	Msa1243040	0.815074	1.113526e-51	-8.615850e-47
Msa0585920	Msa1243040	0.813682	2.261544e-51	-8.615850e-47
Msa0850960	Msa1243040	0.813339	2.691653e-51	-8.615850e-47
Msa0863800	Msa1243040	0.801674	8.053711e-49	-8.615850e-47
Msa0896220	Msa1243040	0.809789	1.590319e-50	-8.615850e-47
Msa0930780	Msa1243040	0.846198	2.525489e-59	-8.615850e-47
Msa0937670	Msa1243040	0.840886	6.635392e-58	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1243040	MtrunA17_Chr8g0357241	84.951	206	10	1	1	185	14	219	1.49e-124	350
Msa1243040	MtrunA17_Chr8g0357211	83.981	206	12	1	1	185	14	219	5.25e-123	345
Msa1243040	MtrunA17_Chr2g0312771	58.537	205	64	1	2	185	15	219	1.82e-80	238
Msa1243040	MtrunA17_Chr2g0312751	59.024	205	63	1	2	185	15	219	2.41e-80	238
Msa1243040	MtrunA17_Chr2g0312681	56.311	206	69	1	1	185	14	219	9.51e-79	234
Msa1243040	MtrunA17_Chr2g0312691	56.796	206	68	1	1	185	14	219	3.83e-77	229
Msa1243040	MtrunA17_Chr2g0312781	57.000	200	65	1	2	180	32	231	4.21e-76	228
Msa1243040	MtrunA17_Chr2g0312731	52.195	205	77	1	2	185	15	219	9.81e-73	218
Msa1243040	MtrunA17_Chr3g0107731	48.780	205	84	1	2	185	20	224	4.76e-72	217
Msa1243040	MtrunA17_Chr3g0107741	49.029	206	84	1	1	185	19	224	8.78e-72	216
Msa1243040	MtrunA17_Chr2g0312711	55.224	201	68	2	1	180	14	213	5.36e-69	209
Msa1243040	MtrunA17_Chr2g0312791	53.431	204	72	3	2	182	15	218	9.03e-68	206
Msa1243040	MtrunA17_Chr2g0312811	51.208	207	78	2	2	185	15	221	9.33e-68	206
Msa1243040	MtrunA17_Chr4g0069471	58.235	170	47	3	1	148	35	202	2.11e-60	186
Msa1243040	MtrunA17_Chr2g0312721	48.718	195	79	1	2	175	15	209	3.38e-59	184
Msa1243040	MtrunA17_Chr5g0433801	47.805	205	86	2	2	185	17	221	1.93e-57	179
Msa1243040	MtrunA17_Chr7g0240691	36.041	197	101	4	2	174	48	243	8.70e-30	110
Msa1243040	MtrunA17_Chr7g0240631	32.683	205	111	5	2	183	18	218	1.19e-29	108
Msa1243040	MtrunA17_Chr4g0008791	34.184	196	105	4	2	174	18	212	4.02e-29	107
Msa1243040	MtrunA17_Chr7g0240641	33.171	205	110	5	2	183	18	218	4.92e-29	107
Msa1243040	MtrunA17_Chr7g0240681	32.995	197	107	4	2	174	18	213	2.57e-28	105
Msa1243040	MtrunA17_Chr4g0008781	31.633	196	110	4	2	174	19	213	7.11e-28	104
Msa1243040	MtrunA17_Chr8g0379581	30.882	204	119	2	2	183	16	219	8.05e-28	103
Msa1243040	MtrunA17_Chr7g0240531	34.466	206	106	6	2	183	18	218	1.12e-26	101
Msa1243040	MtrunA17_Chr1g0196661	33.333	198	108	3	2	175	14	211	2.28e-26	100
Msa1243040	MtrunA17_Chr7g0240611	38.150	173	83	5	2	153	18	187	2.76e-26	100
Msa1243040	MtrunA17_Chr7g0240541	33.171	205	110	5	2	183	18	218	5.94e-26	99.4
Msa1243040	MtrunA17_Chr4g0029341	34.343	198	106	3	2	175	15	212	7.63e-26	99.0
Msa1243040	MtrunA17_Chr3g0132581	40.260	154	72	1	2	135	16	169	7.91e-26	99.0
Msa1243040	MtrunA17_Chr5g0415411	33.491	212	97	6	2	176	16	220	8.73e-25	96.3
Msa1243040	MtrunA17_Chr7g0240671	40.278	144	64	3	2	124	15	157	3.77e-24	94.7
Msa1243040	MtrunA17_Chr8g0379561	33.333	171	92	2	3	151	18	188	4.71e-24	94.4
Msa1243040	MtrunA17_Chr6g0483141	32.683	205	109	5	5	182	17	219	1.01e-23	93.6
Msa1243040	MtrunA17_Chr7g0240561	29.756	205	117	5	2	183	18	218	2.07e-23	92.8
Msa1243040	MtrunA17_Chr7g0240511	33.659	205	104	7	2	183	18	213	2.76e-23	92.0
Msa1243040	MtrunA17_Chr7g0240551	31.707	205	113	5	2	183	18	218	4.88e-23	91.7
Msa1243040	MtrunA17_Chr5g0417011	28.283	198	114	3	2	171	18	215	1.54e-22	90.5
Msa1243040	MtrunA17_Chr8g0363751	34.737	190	94	5	2	161	16	205	1.84e-22	90.5
Msa1243040	MtrunA17_Chr7g0240581	34.031	191	95	5	1	161	10	199	2.03e-22	90.1
Msa1243040	MtrunA17_Chr1g0196771	37.931	145	65	4	2	123	14	156	2.18e-22	90.1
Msa1243040	MtrunA17_Chr1g0196721	37.931	174	84	3	2	151	13	186	3.34e-22	89.4
Msa1243040	MtrunA17_Chr1g0212301	32.124	193	102	4	2	167	14	204	1.07e-21	88.2
Msa1243040	MtrunA17_Chr7g0240651	38.889	144	66	3	2	124	18	160	1.07e-20	85.5
Msa1243040	MtrunA17_Chr1g0196691	34.857	175	89	4	2	151	39	213	3.30e-20	84.7
Msa1243040	MtrunA17_Chr1g0196711	32.995	197	108	4	2	174	14	210	3.86e-20	84.0
Msa1243040	MtrunA17_Chr7g0240661	40.141	142	63	3	2	122	18	158	9.18e-20	83.2
Msa1243040	MtrunA17_Chr7g0240521	31.148	183	95	5	1	153	17	198	2.04e-19	82.4
Msa1243040	MtrunA17_Chr8g0391631	33.333	144	68	4	2	117	32	175	7.31e-14	66.2
Msa1243040	MtrunA17_Chr2g0313561	44.444	72	19	1	34	84	1	72	8.16e-12	58.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1243040	AT1G78380.1	56.650	203	67	1	1	182	14	216	1.20e-78	234
Msa1243040	AT1G78370.1	54.726	201	70	1	1	180	14	214	1.29e-75	226
Msa1243040	AT1G17170.1	54.854	206	71	2	1	185	14	218	4.49e-73	219
Msa1243040	AT1G78360.1	53.140	207	75	2	1	185	14	220	1.46e-71	216
Msa1243040	AT1G17180.1	52.913	206	76	1	1	185	14	219	2.42e-71	215
Msa1243040	AT1G78340.1	53.500	200	72	1	2	180	15	214	1.66e-70	213
Msa1243040	AT1G78320.1	52.239	201	75	1	1	180	14	214	1.23e-65	201
Msa1243040	AT1G53680.1	47.826	207	85	3	2	185	18	224	2.11e-64	198
Msa1243040	AT1G17190.1	47.783	203	85	1	1	182	15	217	4.13e-63	194
Msa1243040	AT1G78320.2	54.444	180	76	1	1	180	14	187	1.97e-62	192
Msa1243040	AT3G43800.1	45.455	209	89	3	1	184	15	223	1.57e-53	170
Msa1243040	AT3G09270.1	40.909	176	80	3	2	153	17	192	1.07e-30	112
Msa1243040	AT2G29420.1	34.300	207	105	6	2	183	20	220	7.23e-30	109
Msa1243040	AT1G10370.1	33.005	203	107	4	2	175	16	218	3.45e-27	102
Msa1243040	AT1G10360.1	34.123	211	107	5	1	182	15	222	2.84e-26	100
Msa1243040	AT2G29480.1	39.189	148	67	2	2	126	18	165	6.43e-26	99.8
Msa1243040	AT2G29470.1	35.079	191	98	5	2	167	18	207	8.94e-26	99.4
Msa1243040	AT2G29460.1	39.189	148	67	2	2	126	18	165	7.80e-25	96.7
Msa1243040	AT1G59700.1	36.181	199	96	6	2	170	17	214	8.58e-25	97.1
Msa1243040	AT2G29490.1	38.514	148	68	2	2	126	18	165	1.09e-24	96.3
Msa1243040	AT1G27140.1	35.122	205	102	5	2	175	17	221	1.22e-24	96.7
Msa1243040	AT1G74590.1	29.048	210	116	5	2	181	18	224	3.43e-24	95.1
Msa1243040	AT2G29450.1	41.333	150	62	4	2	126	17	165	4.34e-24	94.7
Msa1243040	AT2G29440.1	40.132	152	60	4	2	126	17	164	1.06e-23	93.6
Msa1243040	AT1G59670.1	34.615	208	106	5	4	181	19	226	1.40e-23	93.6
Msa1243040	AT1G27130.1	33.005	203	106	5	2	174	17	219	1.45e-23	93.6
Msa1243040	AT5G62480.1	31.953	169	86	2	2	141	19	187	3.26e-23	92.8
Msa1243040	AT5G62480.2	31.757	148	88	2	2	141	19	161	2.66e-20	84.7
Msa1243040	AT1G69920.1	31.163	215	111	7	2	184	45	254	2.22e-19	82.8
Msa1243040	AT5G62480.3	31.757	148	87	3	2	141	19	160	5.72e-19	81.3
Msa1243040	AT1G69930.1	29.353	201	114	4	2	174	23	223	6.71e-19	81.3

Find 33 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAAAGCTCAAGCAAGATTT+TGG	0.147771	8_2:-28036943	Msa1243040:CDS
AGGATAGCATTGGCTGAAAA+AGG	0.234872	8_2:-28037108	Msa1243040:CDS
CTTGGAGACCAACCTTATTT+TGG	0.247910	8_2:-28036361	Msa1243040:CDS
ATAATGATGGACTCAGAAAT+TGG	0.262147	8_2:+28036979	None:intergenic
ACTGGAATCTTCTTGTGAAT+TGG	0.280000	8_2:+28037021	None:intergenic
AGAGTTGATTGAAGGCTTAA+AGG	0.308675	8_2:-28036398	Msa1243040:CDS
GTGATGTTGGAGGGAGGATA+TGG	0.334233	8_2:-28036456	Msa1243040:CDS
GATTCATTTGCAAAAGCATT+TGG	0.343663	8_2:+28037043	None:intergenic
TTTCCCTTATGGATAAGAAC+TGG	0.413273	8_2:+28037003	None:intergenic
AAAGAGAGATGAGATTGAAT+TGG	0.418834	8_2:-28036428	Msa1243040:CDS
GATTCCAGTTCTTATCCATA+AGG	0.427078	8_2:-28037007	Msa1243040:CDS
AATGTGTCACCACCAAAATA+AGG	0.439985	8_2:+28036349	None:intergenic
GCAAAGAAAGAGTTGATTGA+AGG	0.446921	8_2:-28036406	Msa1243040:CDS
TATAAAACCAACTATGAAAA+GGG	0.461833	8_2:+28036302	None:intergenic
ATTCCAGTTCTTATCCATAA+GGG	0.462545	8_2:-28037006	Msa1243040:CDS
TGAATGGCTTAGTATATGTT+TGG	0.462794	8_2:-28037141	None:intergenic
CTATAGGAAGAGGTTTGAGT+TGG	0.462917	8_2:-28036143	Msa1243040:CDS
GTATAAAACCAACTATGAAA+AGG	0.463905	8_2:+28036301	None:intergenic
AAAATGCAGGTTGGTGATGT+TGG	0.476506	8_2:-28036469	Msa1243040:intron
GATATACTCAACTATAATGA+TGG	0.480354	8_2:+28036966	None:intergenic
AAGGAATTAGAGAATGTGCT+TGG	0.497037	8_2:-28036379	Msa1243040:CDS
GGCAAAGAGATGCACGCAAA+GGG	0.509213	8_2:-28036221	Msa1243040:CDS
TTGTTATTAACTATAGGAAG+AGG	0.518761	8_2:-28036153	Msa1243040:CDS
AGGGATAAAGTATGAGTACA+AGG	0.524364	8_2:-28037088	Msa1243040:CDS
ATTATGCAACTTCAAAGTTG+AGG	0.546513	8_2:-28036269	Msa1243040:CDS
TGCAGGTTGGTGATGTTGGA+GGG	0.552099	8_2:-28036465	Msa1243040:intron
GGGCAAAGAGATGCACGCAA+AGG	0.571043	8_2:-28036222	Msa1243040:CDS
CATGAGAGCAAGGATAGCAT+TGG	0.573949	8_2:-28037118	Msa1243040:CDS
GTTGGAGGGAGGATATGGAC+TGG	0.582021	8_2:-28036451	Msa1243040:CDS
ATGCAGGTTGGTGATGTTGG+AGG	0.585807	8_2:-28036466	Msa1243040:intron
ATATGTTTGGCATGAGAGCA+AGG	0.590792	8_2:-28037128	Msa1243040:CDS
TGTCACCACCAAAATAAGGT+TGG	0.621870	8_2:+28036353	None:intergenic
AGGTTGGTGATGTTGGAGGG+AGG	0.678043	8_2:-28036462	Msa1243040:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AGATATTTTTATTTATTTTC+TGG	+	chr8_2:28036410-28036429	None:intergenic	10.0%
!!!	AGATATTTTTATTTATTTTC+TGG	+	chr8_2:28036410-28036429	None:intergenic	10.0%
!!!	ATGATTTTGTTATTAACTAT+AGG	-	chr8_2:28037105-28037124	Msa1243040:CDS	15.0%
!!!	ATGATTTTGTTATTAACTAT+AGG	-	chr8_2:28037105-28037124	Msa1243040:CDS	15.0%
!!	AAATGAAACTTTGAATCAAA+AGG	+	chr8_2:28036455-28036474	None:intergenic	20.0%
!!	TAATGAATTAGATAACATGA+AGG	-	chr8_2:28036515-28036534	Msa1243040:intron	20.0%
!!	AGAGAAAACAATAAAAAAGA+AGG	+	chr8_2:28036544-28036563	None:intergenic	20.0%
!!!	TTGTTTTCTCTAATATTCAA+TGG	-	chr8_2:28036553-28036572	Msa1243040:intron	20.0%
!!	TATCCATATTATTAAAGACT+AGG	-	chr8_2:28036716-28036735	Msa1243040:intron	20.0%
!!	AATGTGTTAAAAAAAAATGC+AGG	-	chr8_2:28036782-28036801	Msa1243040:intron	20.0%
!!	TATAAAACCAACTATGAAAA+GGG	+	chr8_2:28036965-28036984	None:intergenic	20.0%
!!	AAATGAAACTTTGAATCAAA+AGG	+	chr8_2:28036455-28036474	None:intergenic	20.0%
!!	TAATGAATTAGATAACATGA+AGG	-	chr8_2:28036515-28036534	Msa1243040:intron	20.0%
!!	AGAGAAAACAATAAAAAAGA+AGG	+	chr8_2:28036544-28036563	None:intergenic	20.0%
!!!	TTGTTTTCTCTAATATTCAA+TGG	-	chr8_2:28036553-28036572	Msa1243040:intron	20.0%
!!	TATCCATATTATTAAAGACT+AGG	-	chr8_2:28036716-28036735	Msa1243040:intron	20.0%
!!	AATGTGTTAAAAAAAAATGC+AGG	-	chr8_2:28036782-28036801	Msa1243040:intron	20.0%
!!	TATAAAACCAACTATGAAAA+GGG	+	chr8_2:28036965-28036984	None:intergenic	20.0%
!	GATATACTCAACTATAATGA+TGG	+	chr8_2:28036301-28036320	None:intergenic	25.0%
!!!	ACAAAAAGGTAAGTTTTGTT+AGG	-	chr8_2:28036357-28036376	Msa1243040:CDS	25.0%
!!!	GTACTGTTTTTACTTTTGAA+TGG	-	chr8_2:28036480-28036499	Msa1243040:intron	25.0%
!	TTTCTCTAATATTCAATGGA+TGG	-	chr8_2:28036557-28036576	Msa1243040:intron	25.0%
!	CTTCATATTTCATCAATGAA+TGG	-	chr8_2:28036669-28036688	Msa1243040:intron	25.0%
!!	CAACCTAGTCTTTAATAATA+TGG	+	chr8_2:28036722-28036741	None:intergenic	25.0%
!	TGTTAAAAAAAAATGCAGGT+TGG	-	chr8_2:28036786-28036805	Msa1243040:intron	25.0%
!	GTATAAAACCAACTATGAAA+AGG	+	chr8_2:28036966-28036985	None:intergenic	25.0%
!!	TTGTTATTAACTATAGGAAG+AGG	-	chr8_2:28037111-28037130	Msa1243040:CDS	25.0%
!	GATATACTCAACTATAATGA+TGG	+	chr8_2:28036301-28036320	None:intergenic	25.0%
!!!	ACAAAAAGGTAAGTTTTGTT+AGG	-	chr8_2:28036357-28036376	Msa1243040:CDS	25.0%
!!!	GTACTGTTTTTACTTTTGAA+TGG	-	chr8_2:28036480-28036499	Msa1243040:intron	25.0%
!	TTTCTCTAATATTCAATGGA+TGG	-	chr8_2:28036557-28036576	Msa1243040:intron	25.0%
!	CTTCATATTTCATCAATGAA+TGG	-	chr8_2:28036669-28036688	Msa1243040:intron	25.0%
!!	CAACCTAGTCTTTAATAATA+TGG	+	chr8_2:28036722-28036741	None:intergenic	25.0%
!	TGTTAAAAAAAAATGCAGGT+TGG	-	chr8_2:28036786-28036805	Msa1243040:intron	25.0%
!	GTATAAAACCAACTATGAAA+AGG	+	chr8_2:28036966-28036985	None:intergenic	25.0%
!!	TTGTTATTAACTATAGGAAG+AGG	-	chr8_2:28037111-28037130	Msa1243040:CDS	25.0%
!!	GATTCATTTGCAAAAGCATT+TGG	+	chr8_2:28036224-28036243	None:intergenic	30.0%
	ATTCCAGTTCTTATCCATAA+GGG	-	chr8_2:28036258-28036277	Msa1243040:CDS	30.0%
!!	ATAATGATGGACTCAGAAAT+TGG	+	chr8_2:28036288-28036307	None:intergenic	30.0%
!!!	GTAAGTTTTGTTAGGTACTA+AGG	-	chr8_2:28036365-28036384	Msa1243040:CDS	30.0%
	AAAGAGAGATGAGATTGAAT+TGG	-	chr8_2:28036836-28036855	Msa1243040:intron	30.0%
	ATTATGCAACTTCAAAGTTG+AGG	-	chr8_2:28036995-28037014	Msa1243040:CDS	30.0%
!!	GATTCATTTGCAAAAGCATT+TGG	+	chr8_2:28036224-28036243	None:intergenic	30.0%
	ATTCCAGTTCTTATCCATAA+GGG	-	chr8_2:28036258-28036277	Msa1243040:CDS	30.0%
!!	ATAATGATGGACTCAGAAAT+TGG	+	chr8_2:28036288-28036307	None:intergenic	30.0%
!!!	GTAAGTTTTGTTAGGTACTA+AGG	-	chr8_2:28036365-28036384	Msa1243040:CDS	30.0%
	AAAGAGAGATGAGATTGAAT+TGG	-	chr8_2:28036836-28036855	Msa1243040:intron	30.0%
	ATTATGCAACTTCAAAGTTG+AGG	-	chr8_2:28036995-28037014	Msa1243040:CDS	30.0%
	AGGGATAAAGTATGAGTACA+AGG	-	chr8_2:28036176-28036195	Msa1243040:CDS	35.0%
	ACTGGAATCTTCTTGTGAAT+TGG	+	chr8_2:28036246-28036265	None:intergenic	35.0%
	GATTCCAGTTCTTATCCATA+AGG	-	chr8_2:28036257-28036276	Msa1243040:CDS	35.0%
	TTTCCCTTATGGATAAGAAC+TGG	+	chr8_2:28036264-28036283	None:intergenic	35.0%
!!!	CAGAAATTGGTTTTCCCTTA+TGG	+	chr8_2:28036275-28036294	None:intergenic	35.0%
!	AGAAAGCTCAAGCAAGATTT+TGG	-	chr8_2:28036321-28036340	Msa1243040:CDS	35.0%
!	GAAAGCTCAAGCAAGATTTT+GGG	-	chr8_2:28036322-28036341	Msa1243040:CDS	35.0%
!!	GGCTGATTTTGTCAACAAAA+AGG	-	chr8_2:28036343-28036362	Msa1243040:CDS	35.0%
	ATACTCATATCTCACTAGGA+AGG	+	chr8_2:28036639-28036658	None:intergenic	35.0%
	TCCTAGTGAGATATGAGTAT+AGG	-	chr8_2:28036639-28036658	Msa1243040:intron	35.0%
	TCCTATACTCATATCTCACT+AGG	+	chr8_2:28036643-28036662	None:intergenic	35.0%
!	GCAAAGAAAGAGTTGATTGA+AGG	-	chr8_2:28036858-28036877	Msa1243040:intron	35.0%
!	AGAGTTGATTGAAGGCTTAA+AGG	-	chr8_2:28036866-28036885	Msa1243040:intron	35.0%
	AAGGAATTAGAGAATGTGCT+TGG	-	chr8_2:28036885-28036904	Msa1243040:intron	35.0%
	AATGTGTCACCACCAAAATA+AGG	+	chr8_2:28036918-28036937	None:intergenic	35.0%
!!!	TATTTTGGTGGTGACACATT+TGG	-	chr8_2:28036918-28036937	Msa1243040:intron	35.0%
!!!	ATTTTGGTGGTGACACATTT+GGG	-	chr8_2:28036919-28036938	Msa1243040:intron	35.0%
!	CTTTGATCCCTTTTCATAGT+TGG	-	chr8_2:28036955-28036974	Msa1243040:intron	35.0%
	AGTGTGAAAAACTGATTGCT+TGG	-	chr8_2:28037021-28037040	Msa1243040:CDS	35.0%
	GTGTGAAAAACTGATTGCTT+GGG	-	chr8_2:28037022-28037041	Msa1243040:CDS	35.0%
	AGGGATAAAGTATGAGTACA+AGG	-	chr8_2:28036176-28036195	Msa1243040:CDS	35.0%
	ACTGGAATCTTCTTGTGAAT+TGG	+	chr8_2:28036246-28036265	None:intergenic	35.0%
	GATTCCAGTTCTTATCCATA+AGG	-	chr8_2:28036257-28036276	Msa1243040:CDS	35.0%
	TTTCCCTTATGGATAAGAAC+TGG	+	chr8_2:28036264-28036283	None:intergenic	35.0%
!!!	CAGAAATTGGTTTTCCCTTA+TGG	+	chr8_2:28036275-28036294	None:intergenic	35.0%
!	AGAAAGCTCAAGCAAGATTT+TGG	-	chr8_2:28036321-28036340	Msa1243040:CDS	35.0%
!	GAAAGCTCAAGCAAGATTTT+GGG	-	chr8_2:28036322-28036341	Msa1243040:CDS	35.0%
!!	GGCTGATTTTGTCAACAAAA+AGG	-	chr8_2:28036343-28036362	Msa1243040:CDS	35.0%
	ATACTCATATCTCACTAGGA+AGG	+	chr8_2:28036639-28036658	None:intergenic	35.0%
	TCCTAGTGAGATATGAGTAT+AGG	-	chr8_2:28036639-28036658	Msa1243040:intron	35.0%
	TCCTATACTCATATCTCACT+AGG	+	chr8_2:28036643-28036662	None:intergenic	35.0%
!	GCAAAGAAAGAGTTGATTGA+AGG	-	chr8_2:28036858-28036877	Msa1243040:intron	35.0%
!	AGAGTTGATTGAAGGCTTAA+AGG	-	chr8_2:28036866-28036885	Msa1243040:intron	35.0%
	AAGGAATTAGAGAATGTGCT+TGG	-	chr8_2:28036885-28036904	Msa1243040:intron	35.0%
	AATGTGTCACCACCAAAATA+AGG	+	chr8_2:28036918-28036937	None:intergenic	35.0%
!!!	TATTTTGGTGGTGACACATT+TGG	-	chr8_2:28036918-28036937	Msa1243040:intron	35.0%
!!!	ATTTTGGTGGTGACACATTT+GGG	-	chr8_2:28036919-28036938	Msa1243040:intron	35.0%
!	CTTTGATCCCTTTTCATAGT+TGG	-	chr8_2:28036955-28036974	Msa1243040:intron	35.0%
	AGTGTGAAAAACTGATTGCT+TGG	-	chr8_2:28037021-28037040	Msa1243040:CDS	35.0%
	GTGTGAAAAACTGATTGCTT+GGG	-	chr8_2:28037022-28037041	Msa1243040:CDS	35.0%
!!	AGGATAGCATTGGCTGAAAA+AGG	-	chr8_2:28036156-28036175	Msa1243040:CDS	40.0%
!!	GGATAGCATTGGCTGAAAAA+GGG	-	chr8_2:28036157-28036176	Msa1243040:CDS	40.0%
	CATATCTCACTAGGAAGGAA+AGG	+	chr8_2:28036634-28036653	None:intergenic	40.0%
!!	AAAATGCAGGTTGGTGATGT+TGG	-	chr8_2:28036795-28036814	Msa1243040:intron	40.0%
!!	CTTGGAGACCAACCTTATTT+TGG	-	chr8_2:28036903-28036922	Msa1243040:intron	40.0%
	TGTCACCACCAAAATAAGGT+TGG	+	chr8_2:28036914-28036933	None:intergenic	40.0%
	CTATAGGAAGAGGTTTGAGT+TGG	-	chr8_2:28037121-28037140	Msa1243040:CDS	40.0%
!!	AGGATAGCATTGGCTGAAAA+AGG	-	chr8_2:28036156-28036175	Msa1243040:CDS	40.0%
!!	GGATAGCATTGGCTGAAAAA+GGG	-	chr8_2:28036157-28036176	Msa1243040:CDS	40.0%
	CATATCTCACTAGGAAGGAA+AGG	+	chr8_2:28036634-28036653	None:intergenic	40.0%
!!	AAAATGCAGGTTGGTGATGT+TGG	-	chr8_2:28036795-28036814	Msa1243040:intron	40.0%
!!	CTTGGAGACCAACCTTATTT+TGG	-	chr8_2:28036903-28036922	Msa1243040:intron	40.0%
	TGTCACCACCAAAATAAGGT+TGG	+	chr8_2:28036914-28036933	None:intergenic	40.0%
	CTATAGGAAGAGGTTTGAGT+TGG	-	chr8_2:28037121-28037140	Msa1243040:CDS	40.0%
	CATGAGAGCAAGGATAGCAT+TGG	-	chr8_2:28036146-28036165	Msa1243040:CDS	45.0%
!!!	GGAGACCAACCTTATTTTGG+TGG	-	chr8_2:28036906-28036925	Msa1243040:intron	45.0%
	CATGAGAGCAAGGATAGCAT+TGG	-	chr8_2:28036146-28036165	Msa1243040:CDS	45.0%
!!!	GGAGACCAACCTTATTTTGG+TGG	-	chr8_2:28036906-28036925	Msa1243040:intron	45.0%
!!	ATGCAGGTTGGTGATGTTGG+AGG	-	chr8_2:28036798-28036817	Msa1243040:intron	50.0%
!!	TGCAGGTTGGTGATGTTGGA+GGG	-	chr8_2:28036799-28036818	Msa1243040:intron	50.0%
	GTGATGTTGGAGGGAGGATA+TGG	-	chr8_2:28036808-28036827	Msa1243040:intron	50.0%
	GGCAAAGAGATGCACGCAAA+GGG	-	chr8_2:28037043-28037062	Msa1243040:CDS	50.0%
!!	ATGCAGGTTGGTGATGTTGG+AGG	-	chr8_2:28036798-28036817	Msa1243040:intron	50.0%
!!	TGCAGGTTGGTGATGTTGGA+GGG	-	chr8_2:28036799-28036818	Msa1243040:intron	50.0%
	GTGATGTTGGAGGGAGGATA+TGG	-	chr8_2:28036808-28036827	Msa1243040:intron	50.0%
	GGCAAAGAGATGCACGCAAA+GGG	-	chr8_2:28037043-28037062	Msa1243040:CDS	50.0%
!!	AGGTTGGTGATGTTGGAGGG+AGG	-	chr8_2:28036802-28036821	Msa1243040:intron	55.0%
	GTTGGAGGGAGGATATGGAC+TGG	-	chr8_2:28036813-28036832	Msa1243040:intron	55.0%
	GGGCAAAGAGATGCACGCAA+AGG	-	chr8_2:28037042-28037061	Msa1243040:CDS	55.0%
!!	AGGTTGGTGATGTTGGAGGG+AGG	-	chr8_2:28036802-28036821	Msa1243040:intron	55.0%
	GTTGGAGGGAGGATATGGAC+TGG	-	chr8_2:28036813-28036832	Msa1243040:intron	55.0%
	GGGCAAAGAGATGCACGCAA+AGG	-	chr8_2:28037042-28037061	Msa1243040:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	28036138	28037148	28036138	ID=Msa1243040;Name=Msa1243040
chr8_2	mRNA	28036138	28037148	28036138	ID=Msa1243040-mRNA-1;Parent=Msa1243040;Name=Msa1243040-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0\|0\|1\|0\|0.33\|3\|0\|185
chr8_2	exon	28036978	28037148	28036978	ID=Msa1243040-mRNA-1:exon:9841;Parent=Msa1243040-mRNA-1
chr8_2	exon	28036922	28036963	28036922	ID=Msa1243040-mRNA-1:exon:9840;Parent=Msa1243040-mRNA-1
chr8_2	exon	28036138	28036482	28036138	ID=Msa1243040-mRNA-1:exon:9839;Parent=Msa1243040-mRNA-1
chr8_2	CDS	28036978	28037148	28036978	ID=Msa1243040-mRNA-1:cds;Parent=Msa1243040-mRNA-1
chr8_2	CDS	28036922	28036963	28036922	ID=Msa1243040-mRNA-1:cds;Parent=Msa1243040-mRNA-1
chr8_2	CDS	28036138	28036482	28036138	ID=Msa1243040-mRNA-1:cds;Parent=Msa1243040-mRNA-1

Gene Sequence

>Msa1243040

ATGTTTGGCATGAGAGCAAGGATAGCATTGGCTGAAAAAGGGATAAAGTATGAGTACAAGGAAGAAGATCTTGAAAACAAGAGCCAAATGCTTTTGCAAATGAATCCAATTCACAAGAAGATTCCAGTTCTTATCCATAAGGGAAAACCAATTTCTGAGTCCATCATTATAAAAGCTCAAGCAAGATTTTGGGCTGATTTTGTCAACAAAAAGGTTGGTGATGTTGGAGGGAGGATATGGACTGGAAAGAGAGATGAGATTGAATTGGCAAAGAAAGAGTTGATTGAAGGCTTAAAGGAATTAGAGAATGTGCTTGGAGACCAACCTTATTTTGGTGGTGACACATTTGGGTTTGTTGACATTGCTTTGATCCCTTTTCATAGTTGGTTTTATACTTATGAGAAATTATGCAACTTCAAAGTTGAGGAAGAGTGTGAAAAACTGATTGCTTGGGCAAAGAGATGCACGCAAAGGGAGAGTGTTTCTAAATCTGTTGCTGATGAGAAAGAAGTGTATGATTTTGTTATTAACTATAGGAAGAGGTTTGAGTTGGAATGA

Protein sequence

>Msa1243040

MFGMRARIALAEKGIKYEYKEEDLENKSQMLLQMNPIHKKIPVLIHKGKPISESIIIKAQARFWADFVNKKVGDVGGRIWTGKRDEIELAKKELIEGLKELENVLGDQPYFGGDTFGFVDIALIPFHSWFYTYEKLCNFKVEEECEKLIAWAKRCTQRESVSKSVADEKEVYDFVINYRKRFELE*