AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1287410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1287410 MtrunA17_Chr8g0360931 96.516 488 17 0 1 488 1 488 0.0 991
Msa1287410 MtrunA17_Chr2g0323521 72.141 481 127 3 10 488 9 484 0.0 707
Msa1287410 MtrunA17_Chr4g0022651 70.807 483 133 3 10 488 6 484 0.0 697
Msa1287410 MtrunA17_Chr4g0072941 34.264 394 241 6 33 416 82 467 6.30e-75 244
Msa1287410 MtrunA17_Chr2g0305591 34.360 422 258 9 5 416 63 475 3.61e-73 239
Msa1287410 MtrunA17_Chr8g0384961 28.770 431 223 14 2 428 309 659 5.45e-38 147
Msa1287410 MtrunA17_Chr4g0061331 26.651 424 232 13 26 441 347 699 5.76e-35 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1287410 AT2G20900.3 71.107 488 125 7 10 488 11 491 0.0 689
Msa1287410 AT2G20900.2 71.107 488 125 7 10 488 11 491 0.0 689
Msa1287410 AT2G20900.4 71.908 477 118 7 10 477 11 480 0.0 684
Msa1287410 AT2G20900.1 71.908 477 118 7 10 477 11 480 0.0 684
Msa1287410 AT4G28130.1 67.325 456 138 5 10 462 18 465 0.0 631
Msa1287410 AT4G30340.1 35.952 420 259 6 5 419 65 479 4.49e-82 263
Msa1287410 AT2G18730.1 36.190 420 252 8 5 416 62 473 7.72e-81 259
Msa1287410 AT5G57690.1 35.062 405 243 7 22 416 78 472 1.15e-79 256
Msa1287410 AT4G30340.2 34.069 317 188 8 5 310 65 371 2.32e-52 181
Msa1287410 AT5G63770.1 31.061 396 200 13 36 428 342 667 6.73e-40 153
Msa1287410 AT5G63770.2 31.061 396 200 13 36 428 342 667 6.73e-40 153
Msa1287410 AT5G07920.3 25.874 429 238 13 6 428 329 683 1.68e-32 132
Msa1287410 AT5G07920.1 25.874 429 238 13 6 428 329 683 1.68e-32 132
Msa1287410 AT5G07920.2 25.708 424 239 12 6 425 329 680 4.85e-32 130

Find 125 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATCAACTTTATGCTAATT+TGG 0.109692 8_3:-37738598 Msa1287410:CDS
TTCTGGTGGACTCAATCCTT+GGG 0.269342 8_3:-37735152 Msa1287410:CDS
AGTTGATGCAGCACCTTATC+TGG 0.277445 8_3:+37738612 None:intergenic
ACCAAGCTGACCACCACTTT+TGG 0.279509 8_3:+37739314 None:intergenic
TTGGTACCTGATTATATAAC+TGG 0.284508 8_3:+37736922 None:intergenic
GCTTAATTTGTGGGAATCAT+AGG 0.284787 8_3:-37733857 Msa1287410:three_prime_UTR
GGTAGCTCGAGGGGCGCAAT+TGG 0.291386 8_3:+37737398 None:intergenic
ACTCTTCCATTTGTTGATGA+TGG 0.299422 8_3:-37734965 Msa1287410:CDS
TAGATTGACTTCTTTCTGTT+TGG 0.310089 8_3:+37735124 None:intergenic
GGGTCACATGAACCTTCTTT+TGG 0.310525 8_3:+37737419 None:intergenic
CTTTATTTCAATCATCTTCC+AGG 0.341067 8_3:-37736624 Msa1287410:intron
AATAATCTCCCCTTTGCATT+TGG 0.342561 8_3:-37738309 Msa1287410:CDS
AAACGAGTCCCGTGCCCATT+TGG 0.353354 8_3:+37734887 None:intergenic
TTCACTTCTTAACCAAAATC+AGG 0.367767 8_3:-37739268 Msa1287410:intron
GGTACTGCTAGCTGGCTTCT+TGG 0.373916 8_3:-37738396 Msa1287410:CDS
CAGAAAAGCTGGGCAAGTTT+AGG 0.378607 8_3:+37735170 None:intergenic
TTTCTGGTGGACTCAATCCT+TGG 0.388587 8_3:-37735153 Msa1287410:CDS
TTGCTTGAAATCTAGGTTGC+AGG 0.389244 8_3:-37738426 Msa1287410:intron
GTAGCTCGAGGGGCGCAATT+GGG 0.390135 8_3:+37737399 None:intergenic
AGTGAAGAACGTCGCAAGTT+TGG 0.393094 8_3:-37733948 Msa1287410:CDS
GCTAGCTTTGCTTAATTTGT+GGG 0.396461 8_3:-37733866 Msa1287410:three_prime_UTR
AAGAAGATACCTTGCGGAAA+AGG 0.398349 8_3:+37739891 None:intergenic
ACCGGATTATATACTATTGC+CGG 0.405438 8_3:-37739397 Msa1287410:CDS
ACACCTTTATTCGCAGTTCC+CGG 0.405685 8_3:+37739378 None:intergenic
ACAACTGTGGCATCATCCTT+AGG 0.406771 8_3:+37734113 None:intergenic
TTGCCGGGAACTGCGAATAA+AGG 0.407673 8_3:-37739381 Msa1287410:CDS
CTCTTCCATTTGTTGATGAT+GGG 0.408749 8_3:-37734964 Msa1287410:CDS
TTAGGGAGGGGTTGTTTCCA+TGG 0.417396 8_3:+37734131 None:intergenic
AGCTAGCTTTGCTTAATTTG+TGG 0.420828 8_3:-37733867 Msa1287410:three_prime_UTR
ATCTCCCCTTTGCATTTGGA+TGG 0.434230 8_3:-37738305 Msa1287410:CDS
ATTGAGTCCACCAGAAAAGC+TGG 0.439756 8_3:+37735159 None:intergenic
TAATGAAAAGGCATGGTCAA+TGG 0.444040 8_3:-37736012 Msa1287410:CDS
CACCCTTGTGAAACTCGAAC+CGG 0.447862 8_3:+37734189 None:intergenic
CCGAGTGGCACTGTTGCAAT+TGG 0.452174 8_3:+37738339 None:intergenic
TTGGTTAAGAAGTGAACTAT+AGG 0.454353 8_3:+37739275 None:intergenic
GTGGAGATGGTACTGCTAGC+TGG 0.454788 8_3:-37738404 Msa1287410:CDS
CTTAATTTGTGGGAATCATA+GGG 0.456833 8_3:-37733856 Msa1287410:three_prime_UTR
TCCAAAAGTGGTGGTCAGCT+TGG 0.464308 8_3:-37739315 Msa1287410:CDS
AATGAAAAGGCATGGTCAAT+GGG 0.465123 8_3:-37736011 Msa1287410:CDS
TCATCTTCATGATCAATAGA+AGG 0.466771 8_3:+37734002 None:intergenic
ATCTAGGTTGCAGGTGGAGA+TGG 0.472246 8_3:-37738417 Msa1287410:intron
GTTGCAATTGGCGGCGGATG+AGG 0.478880 8_3:+37738351 None:intergenic
ACGCTGCTGAAATTCAGAAT+AGG 0.485460 8_3:-37738548 Msa1287410:CDS
GATTAAATGCATGCATAGCA+TGG 0.492155 8_3:+37737375 None:intergenic
ATTGAAGGAATTTACGATAC+CGG 0.493744 8_3:-37739415 Msa1287410:CDS
TCAGAAATGATGCCACTGAT+TGG 0.497126 8_3:+37737925 None:intergenic
CTCTGTATACTTGAATGTCT+CGG 0.497714 8_3:+37733920 None:intergenic
AATAGCCCATCATCAACAAA+TGG 0.498544 8_3:+37734959 None:intergenic
CAGAGTGCTTATCTGAAGCT+TGG 0.499397 8_3:-37736673 Msa1287410:CDS
TTCAACAGATAAACTAAACT+TGG 0.505653 8_3:-37737345 Msa1287410:intron
TCATACAGGCCAGCAAAATC+CGG 0.506486 8_3:-37734208 Msa1287410:intron
CAACTGTGGCATCATCCTTA+GGG 0.508134 8_3:+37734114 None:intergenic
AACTTAATTCTAGTGTGTAC+AGG 0.511468 8_3:-37733801 None:intergenic
CCCGGCAATAGTATATAATC+CGG 0.512703 8_3:+37739396 None:intergenic
TGTACCCATCCAAATGCAAA+GGG 0.513071 8_3:+37738300 None:intergenic
CATCAACAAATGGAAGAGTC+AGG 0.515895 8_3:+37734969 None:intergenic
CGAATGAAAGCTCCAAAAGA+AGG 0.516171 8_3:-37737431 Msa1287410:CDS
TGCTAGCTGGCTTCTTGGAG+TGG 0.516778 8_3:-37738391 Msa1287410:CDS
GCAACAGTGCCACTCGGGAC+AGG 0.517878 8_3:-37738333 Msa1287410:CDS
AAAAGTGGTGGTCAGCTTGG+TGG 0.520521 8_3:-37739312 Msa1287410:CDS
AGTGGCACTGTTGCAATTGG+CGG 0.521982 8_3:+37738342 None:intergenic
AAATAGCATAAGAACATTGA+AGG 0.526639 8_3:-37739430 Msa1287410:CDS
CAAAGGAAATGAAAATAGAC+AGG 0.530610 8_3:-37737887 Msa1287410:intron
GGCACTGTTGCAATTGGCGG+CGG 0.532979 8_3:+37738345 None:intergenic
CCGGATTATATACTATTGCC+GGG 0.533158 8_3:-37739396 Msa1287410:CDS
CCAATTGCAACAGTGCCACT+CGG 0.537514 8_3:-37738339 Msa1287410:CDS
GCATAGCATGGGGTAGCTCG+AGG 0.537854 8_3:+37737387 None:intergenic
AAGATAATAACAATGGGTGA+TGG 0.538932 8_3:-37739453 Msa1287410:exon
TCTCCCCTTTGCATTTGGAT+GGG 0.539959 8_3:-37738304 Msa1287410:intron
CAAAGGTAAAGATAATGAAA+AGG 0.543910 8_3:-37736024 Msa1287410:CDS
TTCATTAACTCCAAAAGTGG+TGG 0.545876 8_3:-37739324 Msa1287410:CDS
ATTAAATGCATGCATAGCAT+GGG 0.546820 8_3:+37737376 None:intergenic
AGCTTGGATGTACACAAGGC+TGG 0.551581 8_3:-37736657 Msa1287410:CDS
TGATCAATAGAAGGTGAAGA+AGG 0.557849 8_3:+37734011 None:intergenic
CTGAAGCTTGGATGTACACA+AGG 0.558142 8_3:-37736661 Msa1287410:CDS
GATGGGCTATTTGAAGTGGT+TGG 0.560225 8_3:-37734947 Msa1287410:CDS
CATAGCATGGGGTAGCTCGA+GGG 0.560770 8_3:+37737388 None:intergenic
GAATCATGTAAAAGCTGCAA+AGG 0.562872 8_3:-37737904 Msa1287410:CDS
ACGGCTACCACACTTACCGC+GGG 0.568615 8_3:-37737180 Msa1287410:CDS
ATGGAAACAACCCCTCCCTA+AGG 0.571412 8_3:-37734129 Msa1287410:CDS
TGATGATGGGCTATTTGAAG+TGG 0.575258 8_3:-37734951 Msa1287410:CDS
CAATTGCAACAGTGCCACTC+GGG 0.576226 8_3:-37738338 Msa1287410:CDS
GAGTTAATGAAAACAACGAC+AGG 0.578246 8_3:+37739336 None:intergenic
TTGTTTGCACCAAATGGGCA+CGG 0.581287 8_3:-37734896 Msa1287410:CDS
ATGTACCCATCCAAATGCAA+AGG 0.584441 8_3:+37738299 None:intergenic
TGTTTGCACCAAATGGGCAC+GGG 0.587324 8_3:-37734895 Msa1287410:CDS
CTTGAAATCTAGGTTGCAGG+TGG 0.595346 8_3:-37738423 Msa1287410:intron
AATCCGGTTCGAGTTTCACA+AGG 0.596451 8_3:-37734192 Msa1287410:CDS
AAAACAACGACAGGACATGC+AGG 0.596525 8_3:+37739345 None:intergenic
ATAGCATGGGGTAGCTCGAG+GGG 0.598692 8_3:+37737389 None:intergenic
AGTTTGAAGATAATAACAAT+GGG 0.611523 8_3:-37739459 Msa1287410:exon
TTGAGTCCACCAGAAAAGCT+GGG 0.614129 8_3:+37735160 None:intergenic
GACGGCTACCACACTTACCG+CGG 0.615359 8_3:-37737181 Msa1287410:CDS
TGAGAGTCGACGGTGAACCA+TGG 0.616128 8_3:-37734148 Msa1287410:CDS
TTACCAGGTCTATGATTTGG+GGG 0.616141 8_3:-37738643 Msa1287410:intron
TCTGGTGGACTCAATCCTTG+GGG 0.616355 8_3:-37735151 Msa1287410:CDS
GTGGCATCATCCTTAGGGAG+GGG 0.617183 8_3:+37734119 None:intergenic
CTGTGGCATCATCCTTAGGG+AGG 0.622367 8_3:+37734117 None:intergenic
TTTACCAGGTCTATGATTTG+GGG 0.622981 8_3:-37738644 Msa1287410:intron
TGTGGCATCATCCTTAGGGA+GGG 0.624217 8_3:+37734118 None:intergenic
GTAAAGATAATGAAAAGGCA+TGG 0.628052 8_3:-37736019 Msa1287410:CDS
ACTGATTGGATGTCTGTGGT+AGG 0.630568 8_3:+37737939 None:intergenic
GAGACATTCAAGTATACAGA+GGG 0.631121 8_3:-37733918 Msa1287410:CDS
TTGGAAAAGCTAAAACACAA+TGG 0.632887 8_3:-37738579 Msa1287410:CDS
GCACGGGACTCGTTTAGCAC+AGG 0.633430 8_3:-37734879 Msa1287410:intron
AAGACCTTCACATACCTCGC+AGG 0.636678 8_3:-37735988 Msa1287410:intron
CATATGCATTTCATTCTGAG+AGG 0.638105 8_3:-37736971 Msa1287410:CDS
CTCACCTGCGAGGTATGTGA+AGG 0.639763 8_3:+37735984 None:intergenic
GAATATTGCTCAGCTGACAA+AGG 0.640758 8_3:-37736041 Msa1287410:CDS
AGATTATTTCCTGTCCCGAG+TGG 0.642986 8_3:+37738324 None:intergenic
CAGTTTGAAGATAATAACAA+TGG 0.654088 8_3:-37739460 Msa1287410:exon
CGAGACATTCAAGTATACAG+AGG 0.656336 8_3:-37733919 Msa1287410:CDS
TGTACATTCATGAGAGTCGA+CGG 0.657163 8_3:-37734158 Msa1287410:CDS
GTTGTTGAAATATCTCACCA+TGG 0.670217 8_3:-37734092 Msa1287410:CDS
TACCACAGACATCCAATCAG+TGG 0.671367 8_3:-37737937 Msa1287410:CDS
GGCTACCACACTTACCGCGG+GGG 0.675785 8_3:-37737178 Msa1287410:CDS
TTTAGAACGACATAATGGGG+TGG 0.684195 8_3:+37734052 None:intergenic
AGATATTTCAACAACAACTG+TGG 0.687196 8_3:+37734100 None:intergenic
TTAAATGCATGCATAGCATG+GGG 0.698037 8_3:+37737377 None:intergenic
TGCCACTGATTGGATGTCTG+TGG 0.704410 8_3:+37737935 None:intergenic
ATCCGGTTCGAGTTTCACAA+GGG 0.707631 8_3:-37734191 Msa1287410:CDS
TGAATAGTATCTCACCTGCG+AGG 0.715455 8_3:+37735974 None:intergenic
CGGCTACCACACTTACCGCG+GGG 0.716144 8_3:-37737179 Msa1287410:CDS
CAAGCATGCTCACTTGACCA+TGG 0.718287 8_3:+37734075 None:intergenic
GTACCCATCCAAATGCAAAG+GGG 0.755325 8_3:+37738301 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTAAAAAATACATTAATT+CGG + chr8_3:37734064-37734083 None:intergenic 10.0%
!!! TTTTTTTATTTTATTTTACC+AGG - chr8_3:37735159-37735178 Msa1287410:CDS 10.0%
!! TCATAATTCAAATTAAAATT+TGG + chr8_3:37735697-37735716 None:intergenic 10.0%
!! AATAAACATTTATTGAAAAT+TGG - chr8_3:37736936-37736955 Msa1287410:CDS 10.0%
!!! TTGATGATTAAAAAAAATTA+TGG + chr8_3:37737467-37737486 None:intergenic 10.0%
!!! TGATGTAATAATTTAAAATT+AGG - chr8_3:37738022-37738041 Msa1287410:intron 10.0%
!!! AAAATTAAATTTTAGCAAAA+AGG + chr8_3:37739150-37739169 None:intergenic 10.0%
!! TAATCAATGTTGTTAAATAT+CGG - chr8_3:37734685-37734704 Msa1287410:intron 15.0%
!! AATTTGAATTATGAATTACA+AGG - chr8_3:37735703-37735722 Msa1287410:intron 15.0%
!! TTCAAAATTAAGAAAAATGA+TGG + chr8_3:37735961-37735980 None:intergenic 15.0%
!! TAAAAAAATATCATAGAACT+AGG + chr8_3:37736124-37736143 None:intergenic 15.0%
!!! ATTTGATGATATATGAAATA+TGG + chr8_3:37737016-37737035 None:intergenic 15.0%
!! ATTTCATATATCATCAAATT+TGG - chr8_3:37737017-37737036 Msa1287410:intron 15.0%
!! TTTCATATATCATCAAATTT+GGG - chr8_3:37737018-37737037 Msa1287410:intron 15.0%
!! TTACTAAATAAATCTTAGAA+GGG + chr8_3:37737518-37737537 None:intergenic 15.0%
!! ATTACTAAATAAATCTTAGA+AGG + chr8_3:37737519-37737538 None:intergenic 15.0%
!!! TATGGTTAAATCATTTTATT+TGG + chr8_3:37738049-37738068 None:intergenic 15.0%
!! AGAAATAAAATAGTTAAACA+AGG - chr8_3:37738135-37738154 Msa1287410:intron 15.0%
!! TATGTAAAAAAAGAAACTAA+GGG + chr8_3:37738177-37738196 None:intergenic 15.0%
!! TTATGTAAAAAAAGAAACTA+AGG + chr8_3:37738178-37738197 None:intergenic 15.0%
!! TTTGAATTTGTGAATATGAA+GGG - chr8_3:37734297-37734316 Msa1287410:intron 20.0%
!! AGTTTGAAGATAATAACAAT+GGG - chr8_3:37734358-37734377 Msa1287410:intron 20.0%
!!! TAAAAACTTTTACCTGATTT+TGG + chr8_3:37734564-37734583 None:intergenic 20.0%
!!! TTTTATTTTTTTTGCAATCG+CGG - chr8_3:37734579-37734598 Msa1287410:intron 20.0%
!! TAGCCTAAAAATGTAATTAT+AGG + chr8_3:37734878-37734897 None:intergenic 20.0%
!!! TCTCAAAACCTTTTATATTA+CGG + chr8_3:37734928-37734947 None:intergenic 20.0%
!!! AAATAAAGCATTTGCATATA+TGG + chr8_3:37735358-37735377 None:intergenic 20.0%
!! TAAAAATGCAAACAAAATGA+TGG + chr8_3:37735647-37735666 None:intergenic 20.0%
!! ATAAGATTTATTTCATTCAC+AGG - chr8_3:37735844-37735863 Msa1287410:intron 20.0%
!! TAAGATTTATTTCATTCACA+GGG - chr8_3:37735845-37735864 Msa1287410:intron 20.0%
!! ATAATATAAAATTTGCACTG+CGG - chr8_3:37736034-37736053 Msa1287410:CDS 20.0%
!!! TTTTACAAGAATTCTTATAG+AGG + chr8_3:37736226-37736245 None:intergenic 20.0%
!! TAAAAACCAGTTATATAATC+AGG - chr8_3:37736889-37736908 Msa1287410:intron 20.0%
!!! TAGTTATTTTTTGGTTGATT+TGG - chr8_3:37737217-37737236 Msa1287410:intron 20.0%
!!! TCAATTTATTTTACGAAGTT+GGG - chr8_3:37737240-37737259 Msa1287410:intron 20.0%
!! ATGAGACATATCAATAAATT+TGG - chr8_3:37737278-37737297 Msa1287410:intron 20.0%
!! TTTATTTAGTAATGACTCTT+TGG - chr8_3:37737526-37737545 Msa1287410:intron 20.0%
!! GAATTATACTACTTAATAGA+AGG + chr8_3:37737733-37737752 None:intergenic 20.0%
!!! AAATGTTTAAATTTTGACAC+AGG - chr8_3:37737754-37737773 Msa1287410:intron 20.0%
!! ACAATTTATGATTCAAAAGT+TGG + chr8_3:37737934-37737953 None:intergenic 20.0%
!!! GAAATATATTTTGTTTCATC+AGG + chr8_3:37738074-37738093 None:intergenic 20.0%
!!! ATTTTATTTCTGTGTATAGT+TGG + chr8_3:37738126-37738145 None:intergenic 20.0%
!!! CTTTTTTTACATAACAAGTA+TGG - chr8_3:37738184-37738203 Msa1287410:intron 20.0%
!!! ACCATAACTTTTATATATCA+AGG - chr8_3:37738233-37738252 Msa1287410:intron 20.0%
!! TCCTTGATATATAAAAGTTA+TGG + chr8_3:37738237-37738256 None:intergenic 20.0%
!! TATAGTTATATATTGACCAT+TGG - chr8_3:37739357-37739376 Msa1287410:CDS 20.0%
!! ATAGTTATATATTGACCATT+GGG - chr8_3:37739358-37739377 Msa1287410:CDS 20.0%
!!! TTTAAAATTGGTCAATTAAG+TGG + chr8_3:37739526-37739545 None:intergenic 20.0%
!! TTTCAATAATACAATCATAC+AGG - chr8_3:37739595-37739614 Msa1287410:intron 20.0%
! TCACAAAGATTATCAAAAAC+TGG + chr8_3:37733987-37734006 None:intergenic 25.0%
!!! TTTTGAAATTAAGTCCTGTT+TGG - chr8_3:37734024-37734043 Msa1287410:CDS 25.0%
! CGTAATAACTAACCAAAATT+TGG + chr8_3:37734121-37734140 None:intergenic 25.0%
! GATTCTTAAAATAAACAACG+CGG + chr8_3:37734258-37734277 None:intergenic 25.0%
! GTTTGAATTTGTGAATATGA+AGG - chr8_3:37734296-37734315 Msa1287410:intron 25.0%
! CAGTTTGAAGATAATAACAA+TGG - chr8_3:37734357-37734376 Msa1287410:intron 25.0%
! AAATAGCATAAGAACATTGA+AGG - chr8_3:37734387-37734406 Msa1287410:intron 25.0%
! CTAAAAATGTAATTATAGGC+GGG + chr8_3:37734874-37734893 None:intergenic 25.0%
! CCTAAAAATGTAATTATAGG+CGG + chr8_3:37734875-37734894 None:intergenic 25.0%
! GTATACAACCGTAATATAAA+AGG - chr8_3:37734917-37734936 Msa1287410:CDS 25.0%
! TGAATAAAGTGGTAAAATGT+GGG + chr8_3:37734992-37735011 None:intergenic 25.0%
! TTGAATAAAGTGGTAAAATG+TGG + chr8_3:37734993-37735012 None:intergenic 25.0%
!! TAATATGTTGCTTGAAATCT+AGG - chr8_3:37735384-37735403 Msa1287410:intron 25.0%
!! TTTGTCTTGTTATGATCATT+TGG - chr8_3:37735616-37735635 Msa1287410:intron 25.0%
! TAAAACCTTAAATGTGATCA+TGG + chr8_3:37735785-37735804 None:intergenic 25.0%
!!! CATGATTCTTGTTTACATTT+TGG + chr8_3:37736010-37736029 None:intergenic 25.0%
!! TCTGATCAAACATTTACTTT+TGG - chr8_3:37736145-37736164 Msa1287410:intron 25.0%
! TATAGAGGAAAAAACAGAAA+AGG + chr8_3:37736211-37736230 None:intergenic 25.0%
! AAGTTAAAATGTTATTCAGC+TGG - chr8_3:37736351-37736370 Msa1287410:intron 25.0%
! TTCAACAGATAAACTAAACT+TGG - chr8_3:37736472-37736491 Msa1287410:intron 25.0%
!!! ATTTTGGAACTATTTTAGCA+TGG - chr8_3:37736662-37736681 Msa1287410:CDS 25.0%
!!! TTTTGGAACTATTTTAGCAT+GGG - chr8_3:37736663-37736682 Msa1287410:CDS 25.0%
! GAAACTTGTCTTAAATTTGA+AGG - chr8_3:37736689-37736708 Msa1287410:intron 25.0%
!!! AATGTGTATGTTTTTGATGT+AGG - chr8_3:37736806-37736825 Msa1287410:intron 25.0%
!!! AACTGGTTTTTAAACTTTTC+AGG + chr8_3:37736881-37736900 None:intergenic 25.0%
!! TTCTCATCATTACATTCTTT+TGG - chr8_3:37737117-37737136 Msa1287410:intron 25.0%
!!! GTCAATTTATTTTACGAAGT+TGG - chr8_3:37737239-37737258 Msa1287410:intron 25.0%
! CATTGTATCTTTCATAACAA+TGG + chr8_3:37737339-37737358 None:intergenic 25.0%
!!! TTTTAAAGACCAAATTGTGA+TGG + chr8_3:37737392-37737411 None:intergenic 25.0%
!!! AAATCACTTTTTCTCCTATT+TGG - chr8_3:37737411-37737430 Msa1287410:CDS 25.0%
! AAAAAAATGCCAATTTCTGT+TGG - chr8_3:37737647-37737666 Msa1287410:intron 25.0%
! AGAAATATTCCAACAGAAAT+TGG + chr8_3:37737659-37737678 None:intergenic 25.0%
!! TTTTGAATCATAAATTGTGC+AGG - chr8_3:37737936-37737955 Msa1287410:CDS 25.0%
!! AGACACTATGTTGTTTATAT+TGG - chr8_3:37738276-37738295 Msa1287410:intron 25.0%
! AAATGATTTAGATGCATATC+TGG - chr8_3:37738535-37738554 Msa1287410:intron 25.0%
!! TATTTGTTAAGAACATAAGC+AGG - chr8_3:37738771-37738790 Msa1287410:intron 25.0%
! ATCGAATGCTAATAAAATTC+TGG - chr8_3:37738812-37738831 Msa1287410:intron 25.0%
! AATACTGCATATGTATTACA+AGG + chr8_3:37738986-37739005 None:intergenic 25.0%
! CATATGGATAAACATAGATA+AGG + chr8_3:37739040-37739059 None:intergenic 25.0%
! TGTTTATCCATATGAATATG+AGG - chr8_3:37739046-37739065 Msa1287410:intron 25.0%
! TGTCAATTTAAAAAGTCACA+AGG + chr8_3:37739414-37739433 None:intergenic 25.0%
!!! CAACGTATGGTTTTTAAAAT+TGG + chr8_3:37739538-37739557 None:intergenic 25.0%
!!! TACTTTTAGAACGACATAAT+GGG + chr8_3:37739772-37739791 None:intergenic 25.0%
!!! ATACTTTTAGAACGACATAA+TGG + chr8_3:37739773-37739792 None:intergenic 25.0%
!!! GTGTTTTATCTTTGAAGCAA+AGG + chr8_3:37733868-37733887 None:intergenic 30.0%
! TACTTTTGAATGAACCAAAC+AGG + chr8_3:37734041-37734060 None:intergenic 30.0%
! GTAACAAATTTTCGTTTTGG+TGG - chr8_3:37734209-37734228 Msa1287410:intron 30.0%
TAAAATAAACAACGCGGTAA+TGG + chr8_3:37734252-37734271 None:intergenic 30.0%
AAGATAATAACAATGGGTGA+TGG - chr8_3:37734364-37734383 Msa1287410:intron 30.0%
ATTGAAGGAATTTACGATAC+CGG - chr8_3:37734402-37734421 Msa1287410:intron 30.0%
! GTTTTCATTAACTCCAAAAG+TGG - chr8_3:37734490-37734509 Msa1287410:intron 30.0%
TTGGTTAAGAAGTGAACTAT+AGG + chr8_3:37734545-37734564 None:intergenic 30.0%
TTCACTTCTTAACCAAAATC+AGG - chr8_3:37734549-37734568 Msa1287410:intron 30.0%
TGACTGTAATGTCAGAATTT+GGG - chr8_3:37734655-37734674 Msa1287410:intron 30.0%
ATTAAGTCCATTGTTATCGA+TGG + chr8_3:37734817-37734836 None:intergenic 30.0%
! CCGCCTATAATTACATTTTT+AGG - chr8_3:37734872-37734891 Msa1287410:intron 30.0%
!! TACATTTTTAGGCTATGTCA+TGG - chr8_3:37734883-37734902 Msa1287410:CDS 30.0%
! CAACCACAATTTAAAATCAC+AGG - chr8_3:37735029-37735048 Msa1287410:intron 30.0%
ATGTCAATCTCATTATGTGT+TGG + chr8_3:37735080-37735099 None:intergenic 30.0%
ACATAATGAGATTGACATTG+AGG - chr8_3:37735082-37735101 Msa1287410:intron 30.0%
! ATTTTACCAGGTCTATGATT+TGG - chr8_3:37735171-37735190 Msa1287410:CDS 30.0%
! TTTTACCAGGTCTATGATTT+GGG - chr8_3:37735172-37735191 Msa1287410:CDS 30.0%
GCATCAACTTTATGCTAATT+TGG - chr8_3:37735219-37735238 Msa1287410:intron 30.0%
TTGGAAAAGCTAAAACACAA+TGG - chr8_3:37735238-37735257 Msa1287410:intron 30.0%
ATCAAAAGTGGAAAACACAA+AGG + chr8_3:37735317-37735336 None:intergenic 30.0%
GACAAAAATCACATCAAAAG+TGG + chr8_3:37735329-37735348 None:intergenic 30.0%
TTATGAAATTCTCATAGCTC+AGG + chr8_3:37735564-37735583 None:intergenic 30.0%
TTTAGCCATGATCACATTTA+AGG - chr8_3:37735777-37735796 Msa1287410:intron 30.0%
!! TTTAAGGTTTTACCCTTTGT+TGG - chr8_3:37735793-37735812 Msa1287410:intron 30.0%
CAAAGGAAATGAAAATAGAC+AGG - chr8_3:37735930-37735949 Msa1287410:intron 30.0%
AAATTGTGAAACTTCTCAGA+TGG - chr8_3:37735979-37735998 Msa1287410:intron 30.0%
GCAAAATAATGAACAGAAGA+TGG + chr8_3:37736274-37736293 None:intergenic 30.0%
ATTAAATGCATGCATAGCAT+GGG + chr8_3:37736444-37736463 None:intergenic 30.0%
!! CATTTACTTTTGAAAGAGTG+AGG - chr8_3:37736571-37736590 Msa1287410:intron 30.0%
AATTCACTGATCAACATACA+TGG + chr8_3:37736601-37736620 None:intergenic 30.0%
AGCTGTTATATTAAAGTGAC+CGG - chr8_3:37736767-37736786 Msa1287410:intron 30.0%
!! GTATGTTTTTGATGTAGGAA+TGG - chr8_3:37736811-37736830 Msa1287410:intron 30.0%
TTGGTACCTGATTATATAAC+TGG + chr8_3:37736898-37736917 None:intergenic 30.0%
TTAGTTATGTGAGATGAGTT+TGG + chr8_3:37736917-37736936 None:intergenic 30.0%
! CATCAAATTTGGGTTCTATA+CGG - chr8_3:37737028-37737047 Msa1287410:intron 30.0%
! ATCAAATTTGGGTTCTATAC+GGG - chr8_3:37737029-37737048 Msa1287410:intron 30.0%
! CTTTATTTCAATCATCTTCC+AGG - chr8_3:37737193-37737212 Msa1287410:intron 30.0%
!!! CTTCCAGGTTAGTTATTTTT+TGG - chr8_3:37737208-37737227 Msa1287410:intron 30.0%
CAACCAAAAAATAACTAACC+TGG + chr8_3:37737214-37737233 None:intergenic 30.0%
TTGAATAAGCCATCACAATT+TGG - chr8_3:37737380-37737399 Msa1287410:CDS 30.0%
TTAGAGTTTAGAGACCAAAT+AGG + chr8_3:37737428-37737447 None:intergenic 30.0%
!! CTTTGGAACTAAATTGAGAT+AGG - chr8_3:37737543-37737562 Msa1287410:intron 30.0%
!! AATGATGATGGTTTCAGTAA+TGG - chr8_3:37737576-37737595 Msa1287410:intron 30.0%
TGGTTTCAGTAATGGTTTAA+TGG - chr8_3:37737584-37737603 Msa1287410:intron 30.0%
GTAGTATTTACTGAACTATG+TGG - chr8_3:37737689-37737708 Msa1287410:intron 30.0%
CATGCAATCATAGAATATCT+TGG - chr8_3:37737869-37737888 Msa1287410:intron 30.0%
ATTGATATTGCCGTTCAAAT+CGG - chr8_3:37737897-37737916 Msa1287410:CDS 30.0%
! TTGATGATTTCCGATTTGAA+CGG + chr8_3:37737910-37737929 None:intergenic 30.0%
!! ATTTTGTTTCATCAGGCATA+TGG + chr8_3:37738067-37738086 None:intergenic 30.0%
!!! TATTTTTTTCGTAGTGCATC+AGG - chr8_3:37738365-37738384 Msa1287410:CDS 30.0%
!!! ATTTTTTTCGTAGTGCATCA+GGG - chr8_3:37738366-37738385 Msa1287410:CDS 30.0%
AAAAATATCACGTAAGGCAA+AGG + chr8_3:37738400-37738419 None:intergenic 30.0%
AGCTAGAAAAATATCACGTA+AGG + chr8_3:37738406-37738425 None:intergenic 30.0%
!!! TACGTGATATTTTTCTAGCT+AGG - chr8_3:37738406-37738425 Msa1287410:CDS 30.0%
TAGGTTTACTAAACCTTGAT+TGG - chr8_3:37738425-37738444 Msa1287410:intron 30.0%
ACTAAACCTTGATTGGATTA+CGG - chr8_3:37738432-37738451 Msa1287410:intron 30.0%
AAATTTCCGTAATCCAATCA+AGG + chr8_3:37738441-37738460 None:intergenic 30.0%
! TAGATTGACTTCTTTCTGTT+TGG + chr8_3:37738696-37738715 None:intergenic 30.0%
TATGTGTCGAAAATGATACA+CGG + chr8_3:37738753-37738772 None:intergenic 30.0%
!!! TTGTTTTGTTTGCACCAAAT+GGG - chr8_3:37738916-37738935 Msa1287410:intron 30.0%
TGGATAAACATAGATAAGGA+GGG + chr8_3:37739036-37739055 None:intergenic 30.0%
ATGGATAAACATAGATAAGG+AGG + chr8_3:37739037-37739056 None:intergenic 30.0%
AGATATGGGATGTGTTAATT+TGG - chr8_3:37739087-37739106 Msa1287410:intron 30.0%
ATTATCTATTCAATGCCCAA+TGG + chr8_3:37739376-37739395 None:intergenic 30.0%
AGAAAAACTAATGCAACGTA+TGG + chr8_3:37739551-37739570 None:intergenic 30.0%
GAAATGTAAGTCAAAAGAAG+TGG + chr8_3:37739579-37739598 None:intergenic 30.0%
AGATATTTCAACAACAACTG+TGG + chr8_3:37739720-37739739 None:intergenic 30.0%
!!! ACTTTTAGAACGACATAATG+GGG + chr8_3:37739771-37739790 None:intergenic 30.0%
TCATCTTCATGATCAATAGA+AGG + chr8_3:37739818-37739837 None:intergenic 30.0%
!! CTTAATTTGTGGGAATCATA+GGG - chr8_3:37739961-37739980 Msa1287410:five_prime_UTR 30.0%
! TGAATATTACCTTTTCCGCA+AGG - chr8_3:37733917-37733936 Msa1287410:CDS 35.0%
AAGAAGAAGAAGATACCTTG+CGG + chr8_3:37733935-37733954 None:intergenic 35.0%
ATTACGTAACTGTTTCATGC+TGG - chr8_3:37734135-37734154 Msa1287410:CDS 35.0%
! CGCGTAACAAATTTTCGTTT+TGG - chr8_3:37734206-37734225 Msa1287410:intron 35.0%
ACCGGATTATATACTATTGC+CGG - chr8_3:37734420-37734439 Msa1287410:intron 35.0%
GAGTTAATGAAAACAACGAC+AGG + chr8_3:37734484-37734503 None:intergenic 35.0%
TTCATTAACTCCAAAAGTGG+TGG - chr8_3:37734493-37734512 Msa1287410:intron 35.0%
!!! GTTTTGAAAATCGGGGATTT+TGG - chr8_3:37734601-37734620 Msa1287410:intron 35.0%
GTGACTGTAATGTCAGAATT+TGG - chr8_3:37734654-37734673 Msa1287410:intron 35.0%
TTGTTAAATATCGGCCATGA+CGG - chr8_3:37734694-37734713 Msa1287410:intron 35.0%
TATCCTTCACAAATCAGTCA+TGG + chr8_3:37734747-37734766 None:intergenic 35.0%
TGGACTTAATGCTACAAAAC+TGG - chr8_3:37734827-37734846 Msa1287410:intron 35.0%
!! TGCTACAAAACTGGTTTGTA+AGG - chr8_3:37734836-37734855 Msa1287410:intron 35.0%
!! AAAACTGGTTTGTAAGGTCA+GGG - chr8_3:37734842-37734861 Msa1287410:intron 35.0%
CTATGTCATGGTTTGAATTG+CGG - chr8_3:37734895-37734914 Msa1287410:CDS 35.0%
! GGAAACAGAGGTTGAAATTT+TGG + chr8_3:37734971-37734990 None:intergenic 35.0%
TGCTGCAAACTTGAATAAAG+TGG + chr8_3:37735003-37735022 None:intergenic 35.0%
! GTGCCTGTGATTTTAAATTG+TGG + chr8_3:37735035-37735054 None:intergenic 35.0%
TTTACCAGGTCTATGATTTG+GGG - chr8_3:37735173-37735192 Msa1287410:CDS 35.0%
AATAATCTCCCCTTTGCATT+TGG - chr8_3:37735508-37735527 Msa1287410:intron 35.0%
GAATCATGTAAAAGCTGCAA+AGG - chr8_3:37735913-37735932 Msa1287410:intron 35.0%
CTAACAAATTAGACGTTGGA+TGG + chr8_3:37736098-37736117 None:intergenic 35.0%
!! TCCAACGTCTAATTTGTTAG+TGG - chr8_3:37736098-37736117 Msa1287410:intron 35.0%
AGACTTGCCAATGTTAATAC+AGG - chr8_3:37736175-37736194 Msa1287410:intron 35.0%
TCGATGTCCTGTATTAACAT+TGG + chr8_3:37736185-37736204 None:intergenic 35.0%
TTAAATGCATGCATAGCATG+GGG + chr8_3:37736443-37736462 None:intergenic 35.0%
GATTAAATGCATGCATAGCA+TGG + chr8_3:37736445-37736464 None:intergenic 35.0%
AACATACATGTGATCATGCA+CGG + chr8_3:37736536-37736555 None:intergenic 35.0%
GTGAATTCTTGTCTATTCAC+AGG - chr8_3:37736614-37736633 Msa1287410:intron 35.0%
ATTCTTGTCTATTCACAGGA+CGG - chr8_3:37736618-37736637 Msa1287410:intron 35.0%
! TTAAATTTGAAGGCGCACTT+TGG - chr8_3:37736699-37736718 Msa1287410:intron 35.0%
! ATTTTATGTCACACTCTTGC+CGG + chr8_3:37736789-37736808 None:intergenic 35.0%
CATATGCATTTCATTCTGAG+AGG - chr8_3:37736846-37736865 Msa1287410:intron 35.0%
GATAGCTATGAAGAAAGAAC+TGG + chr8_3:37736994-37737013 None:intergenic 35.0%
GCTATATTTGGCAGTTAGTT+AGG - chr8_3:37737051-37737070 Msa1287410:intron 35.0%
ATATGTCTCATCATTTCCGA+TGG + chr8_3:37737269-37737288 None:intergenic 35.0%
! TAATGAAAAGGCATGGTCAA+TGG - chr8_3:37737805-37737824 Msa1287410:intron 35.0%
! AATGAAAAGGCATGGTCAAT+GGG - chr8_3:37737806-37737825 Msa1287410:intron 35.0%
AACTAAGGGAATTCCATTGA+AGG + chr8_3:37738163-37738182 None:intergenic 35.0%
! ACTCTTCCATTTGTTGATGA+TGG - chr8_3:37738852-37738871 Msa1287410:intron 35.0%
!! CTCTTCCATTTGTTGATGAT+GGG - chr8_3:37738853-37738872 Msa1287410:intron 35.0%
AATAGCCCATCATCAACAAA+TGG + chr8_3:37738861-37738880 None:intergenic 35.0%
!!! CTTGTTTTGTTTGCACCAAA+TGG - chr8_3:37738915-37738934 Msa1287410:intron 35.0%
ACCAAGTATGAGGTTAGATA+TGG - chr8_3:37739072-37739091 Msa1287410:intron 35.0%
CCAAGTATGAGGTTAGATAT+GGG - chr8_3:37739073-37739092 Msa1287410:intron 35.0%
CTTGACTGTACAATCATACA+TGG - chr8_3:37739114-37739133 Msa1287410:intron 35.0%
ACTGTACAATCATACATGGA+TGG - chr8_3:37739118-37739137 Msa1287410:intron 35.0%
CTCTTATCATAGAGATTCTG+TGG - chr8_3:37739307-37739326 Msa1287410:CDS 35.0%
GTTGTTGAAATATCTCACCA+TGG - chr8_3:37739725-37739744 Msa1287410:intron 35.0%
TGATCAATAGAAGGTGAAGA+AGG + chr8_3:37739809-37739828 None:intergenic 35.0%
CTCTGTATACTTGAATGTCT+CGG + chr8_3:37739900-37739919 None:intergenic 35.0%
GAGACATTCAAGTATACAGA+GGG - chr8_3:37739899-37739918 Msa1287410:intron 35.0%
!! AGCTAGCTTTGCTTAATTTG+TGG - chr8_3:37739950-37739969 Msa1287410:five_prime_UTR 35.0%
!! GCTAGCTTTGCTTAATTTGT+GGG - chr8_3:37739951-37739970 Msa1287410:five_prime_UTR 35.0%
!! GCTTAATTTGTGGGAATCAT+AGG - chr8_3:37739960-37739979 Msa1287410:five_prime_UTR 35.0%
AAGAAGATACCTTGCGGAAA+AGG + chr8_3:37733929-37733948 None:intergenic 40.0%
! CGACGAGAATCTCCAAATTT+TGG - chr8_3:37734106-37734125 Msa1287410:CDS 40.0%
! AAACAACGCGGTAATGGTAA+TGG + chr8_3:37734246-37734265 None:intergenic 40.0%
CCCGGCAATAGTATATAATC+CGG + chr8_3:37734424-37734443 None:intergenic 40.0%
CCGGATTATATACTATTGCC+GGG - chr8_3:37734421-37734440 Msa1287410:intron 40.0%
!!! GCAATCGCGGTTTTGAAAAT+CGG - chr8_3:37734592-37734611 Msa1287410:intron 40.0%
!!! CAATCGCGGTTTTGAAAATC+GGG - chr8_3:37734593-37734612 Msa1287410:intron 40.0%
!!! AATCGCGGTTTTGAAAATCG+GGG - chr8_3:37734594-37734613 Msa1287410:intron 40.0%
!! GACTGATTTGTGAAGGATAG+TGG - chr8_3:37734748-37734767 Msa1287410:intron 40.0%
AAGTCCATTGTTATCGATGG+CGG + chr8_3:37734814-37734833 None:intergenic 40.0%
!! CAAAACTGGTTTGTAAGGTC+AGG - chr8_3:37734841-37734860 Msa1287410:intron 40.0%
!!! AGGTTTTGAGATCTCTGCAA+CGG - chr8_3:37734937-37734956 Msa1287410:CDS 40.0%
TGGTAAAATGTGGGAAACAG+AGG + chr8_3:37734983-37735002 None:intergenic 40.0%
! ATGTGTTGGCAGTTCAACAT+TGG + chr8_3:37735066-37735085 None:intergenic 40.0%
! TTACCAGGTCTATGATTTGG+GGG - chr8_3:37735174-37735193 Msa1287410:CDS 40.0%
ACGCTGCTGAAATTCAGAAT+AGG - chr8_3:37735269-37735288 Msa1287410:intron 40.0%
TTGCTTGAAATCTAGGTTGC+AGG - chr8_3:37735391-37735410 Msa1287410:intron 40.0%
TGTACCCATCCAAATGCAAA+GGG + chr8_3:37735520-37735539 None:intergenic 40.0%
ATGTACCCATCCAAATGCAA+AGG + chr8_3:37735521-37735540 None:intergenic 40.0%
TCAGAAATGATGCCACTGAT+TGG + chr8_3:37735895-37735914 None:intergenic 40.0%
GCCACTAACAAATTAGACGT+TGG + chr8_3:37736102-37736121 None:intergenic 40.0%
ATGAAATCTCAGCAGAGTCA+AGG + chr8_3:37736310-37736329 None:intergenic 40.0%
CGAATGAAAGCTCCAAAAGA+AGG - chr8_3:37736386-37736405 Msa1287410:intron 40.0%
! GGTTCTATACGGGCTATATT+TGG - chr8_3:37737039-37737058 Msa1287410:intron 40.0%
TTACGAAGTTGGGATTCCAT+CGG - chr8_3:37737250-37737269 Msa1287410:intron 40.0%
ATGGCAAGTGACTGTGTAAA+TGG + chr8_3:37737320-37737339 None:intergenic 40.0%
GGATTACCTGCAAATGATGA+TGG - chr8_3:37737564-37737583 Msa1287410:intron 40.0%
CTGAAACCATCATCATTTGC+AGG + chr8_3:37737573-37737592 None:intergenic 40.0%
GAATATTGCTCAGCTGACAA+AGG - chr8_3:37737776-37737795 Msa1287410:intron 40.0%
TGTGCAGGATAGTAAGATTC+AGG - chr8_3:37737951-37737970 Msa1287410:CDS 40.0%
AATATCACGTAAGGCAAAGG+AGG + chr8_3:37738397-37738416 None:intergenic 40.0%
!!! TTTCTGTTTGGTTTTCCCCA+AGG + chr8_3:37738684-37738703 None:intergenic 40.0%
! AACATAAGCAGGTTTTCGTC+TGG - chr8_3:37738782-37738801 Msa1287410:intron 40.0%
CATCAACAAATGGAAGAGTC+AGG + chr8_3:37738851-37738870 None:intergenic 40.0%
!! TGATGATGGGCTATTTGAAG+TGG - chr8_3:37738866-37738885 Msa1287410:intron 40.0%
!!! TGGTTGGTTTTAGAGATGCT+TGG - chr8_3:37738886-37738905 Msa1287410:intron 40.0%
TGGTGTGCCTCATATTCATA+TGG + chr8_3:37739056-37739075 None:intergenic 40.0%
CCCATATCTAACCTCATACT+TGG + chr8_3:37739076-37739095 None:intergenic 40.0%
!! ACCATCCATTTGATAGTGAG+AGG - chr8_3:37739171-37739190 Msa1287410:intron 40.0%
TCCTCTCACTATCAAATGGA+TGG + chr8_3:37739175-37739194 None:intergenic 40.0%
CATCTCCTCTCACTATCAAA+TGG + chr8_3:37739179-37739198 None:intergenic 40.0%
TGTACATTCATGAGAGTCGA+CGG - chr8_3:37739659-37739678 Msa1287410:intron 40.0%
! TTTAGAACGACATAATGGGG+TGG + chr8_3:37739768-37739787 None:intergenic 40.0%
CGAGACATTCAAGTATACAG+AGG - chr8_3:37739898-37739917 Msa1287410:intron 40.0%
TTACGCGTGTTGTGCTTCAT+TGG + chr8_3:37734193-37734212 None:intergenic 45.0%
!! CGCGGTAATGGTAATGGTAA+TGG + chr8_3:37734240-37734259 None:intergenic 45.0%
ACACCTTTATTCGCAGTTCC+CGG + chr8_3:37734442-37734461 None:intergenic 45.0%
AAAACAACGACAGGACATGC+AGG + chr8_3:37734475-37734494 None:intergenic 45.0%
!!! GGATTTTGGTTGTGACGCAA+GGG - chr8_3:37734615-37734634 Msa1287410:intron 45.0%
!! TCGCCATGACTGATTTGTGA+AGG - chr8_3:37734741-37734760 Msa1287410:intron 45.0%
AATTCCGCCATTTCAAGCCA+TGG + chr8_3:37734776-37734795 None:intergenic 45.0%
!! GGCTTGAAATGGCGGAATTT+TGG - chr8_3:37734777-37734796 Msa1287410:intron 45.0%
! AGTTGATGCAGCACCTTATC+TGG + chr8_3:37735208-37735227 None:intergenic 45.0%
CTTGAAATCTAGGTTGCAGG+TGG - chr8_3:37735394-37735413 Msa1287410:intron 45.0%
AGATTATTTCCTGTCCCGAG+TGG + chr8_3:37735496-37735515 None:intergenic 45.0%
ATCTCCCCTTTGCATTTGGA+TGG - chr8_3:37735512-37735531 Msa1287410:intron 45.0%
TCTCCCCTTTGCATTTGGAT+GGG - chr8_3:37735513-37735532 Msa1287410:intron 45.0%
GTACCCATCCAAATGCAAAG+GGG + chr8_3:37735519-37735538 None:intergenic 45.0%
CATGCACAGCTTCCAACAAA+GGG + chr8_3:37735808-37735827 None:intergenic 45.0%
TCATGCACAGCTTCCAACAA+AGG + chr8_3:37735809-37735828 None:intergenic 45.0%
ACTGATTGGATGTCTGTGGT+AGG + chr8_3:37735881-37735900 None:intergenic 45.0%
TACCACAGACATCCAATCAG+TGG - chr8_3:37735880-37735899 Msa1287410:intron 45.0%
GTCCACGGTCTTCTAACAAA+TGG - chr8_3:37736071-37736090 Msa1287410:intron 45.0%
! GTCCATTTGTTAGAAGACCG+TGG + chr8_3:37736076-37736095 None:intergenic 45.0%
! GGGTCACATGAACCTTCTTT+TGG + chr8_3:37736401-37736420 None:intergenic 45.0%
AATAGTTCCAAAATCCCCCG+CGG + chr8_3:37736656-37736675 None:intergenic 45.0%
CAAGCTTCAGATAAGCACTC+TGG + chr8_3:37737146-37737165 None:intergenic 45.0%
! CAGAGTGCTTATCTGAAGCT+TGG - chr8_3:37737144-37737163 Msa1287410:intron 45.0%
CTGAAGCTTGGATGTACACA+AGG - chr8_3:37737156-37737175 Msa1287410:CDS 45.0%
GCAAGTGACTGTGTAAATGG+CGG + chr8_3:37737317-37737336 None:intergenic 45.0%
TGAATAGTATCTCACCTGCG+AGG + chr8_3:37737846-37737865 None:intergenic 45.0%
! GTTAAACAAGGCGCCTTCAA+TGG - chr8_3:37738147-37738166 Msa1287410:intron 45.0%
CAGAAAAGCTGGGCAAGTTT+AGG + chr8_3:37738650-37738669 None:intergenic 45.0%
! CTAAACTTGCCCAGCTTTTC+TGG - chr8_3:37738648-37738667 Msa1287410:intron 45.0%
TTGAGTCCACCAGAAAAGCT+GGG + chr8_3:37738660-37738679 None:intergenic 45.0%
ATTGAGTCCACCAGAAAAGC+TGG + chr8_3:37738661-37738680 None:intergenic 45.0%
!! TTTCTGGTGGACTCAATCCT+TGG - chr8_3:37738664-37738683 Msa1287410:intron 45.0%
!! TTCTGGTGGACTCAATCCTT+GGG - chr8_3:37738665-37738684 Msa1287410:intron 45.0%
!! GATGGGCTATTTGAAGTGGT+TGG - chr8_3:37738870-37738889 Msa1287410:intron 45.0%
!!! GGTTTTAGAGATGCTTGGCA+TGG - chr8_3:37738891-37738910 Msa1287410:intron 45.0%
TTGTTTGCACCAAATGGGCA+CGG - chr8_3:37738921-37738940 Msa1287410:intron 45.0%
TATGAGGCACACCAAGTATG+AGG - chr8_3:37739062-37739081 Msa1287410:intron 45.0%
TCATACAGGCCAGCAAAATC+CGG - chr8_3:37739609-37739628 Msa1287410:intron 45.0%
! AAACTCGAACCGGATTTTGC+TGG + chr8_3:37739621-37739640 None:intergenic 45.0%
! AATCCGGTTCGAGTTTCACA+AGG - chr8_3:37739625-37739644 Msa1287410:intron 45.0%
! ATCCGGTTCGAGTTTCACAA+GGG - chr8_3:37739626-37739645 Msa1287410:intron 45.0%
CAACTGTGGCATCATCCTTA+GGG + chr8_3:37739706-37739725 None:intergenic 45.0%
ACAACTGTGGCATCATCCTT+AGG + chr8_3:37739707-37739726 None:intergenic 45.0%
AGTGAAGAACGTCGCAAGTT+TGG - chr8_3:37739869-37739888 Msa1287410:intron 45.0%
TTGCCGGGAACTGCGAATAA+AGG - chr8_3:37734436-37734455 Msa1287410:intron 50.0%
TCCAAAAGTGGTGGTCAGCT+TGG - chr8_3:37734502-37734521 Msa1287410:intron 50.0%
! ACCAAGCTGACCACCACTTT+TGG + chr8_3:37734506-37734525 None:intergenic 50.0%
AAAAGTGGTGGTCAGCTTGG+TGG - chr8_3:37734505-37734524 Msa1287410:intron 50.0%
!!! GGGATTTTGGTTGTGACGCA+AGG - chr8_3:37734614-37734633 Msa1287410:intron 50.0%
TCCACTATCAGAGTCCGTCA+TGG + chr8_3:37734711-37734730 None:intergenic 50.0%
! TGTGAAGGATAGTGGTGCCA+TGG - chr8_3:37734756-37734775 Msa1287410:intron 50.0%
!! AGTGGTGCCATGGCTTGAAA+TGG - chr8_3:37734766-37734785 Msa1287410:intron 50.0%
!! CCATTGTTATCGATGGCGGA+TGG + chr8_3:37734810-37734829 None:intergenic 50.0%
CCATCCGCCATCGATAACAA+TGG - chr8_3:37734807-37734826 Msa1287410:intron 50.0%
GTACCCCCAAATCATAGACC+TGG + chr8_3:37735180-37735199 None:intergenic 50.0%
ATCTAGGTTGCAGGTGGAGA+TGG - chr8_3:37735400-37735419 Msa1287410:intron 50.0%
AGTGGCACTGTTGCAATTGG+CGG + chr8_3:37735478-37735497 None:intergenic 50.0%
! CCAATTGCAACAGTGCCACT+CGG - chr8_3:37735478-37735497 Msa1287410:intron 50.0%
! CAATTGCAACAGTGCCACTC+GGG - chr8_3:37735479-37735498 Msa1287410:intron 50.0%
! TGCCACTGATTGGATGTCTG+TGG + chr8_3:37735885-37735904 None:intergenic 50.0%
!! TGCACTGCGGTCGATTTGTT+AGG - chr8_3:37736047-37736066 Msa1287410:intron 50.0%
!! GCACTGCGGTCGATTTGTTA+GGG - chr8_3:37736048-37736067 Msa1287410:intron 50.0%
!! CACTGCGGTCGATTTGTTAG+GGG - chr8_3:37736049-37736068 Msa1287410:intron 50.0%
!! GTCGATTTGTTAGGGGTCCA+CGG - chr8_3:37736056-37736075 Msa1287410:intron 50.0%
AGCTTGGATGTACACAAGGC+TGG - chr8_3:37737160-37737179 Msa1287410:CDS 50.0%
AAGACCTTCACATACCTCGC+AGG - chr8_3:37737829-37737848 Msa1287410:intron 50.0%
! AACTTGCCCAGCTTTTCTGG+TGG - chr8_3:37738651-37738670 Msa1287410:intron 50.0%
!! TCTGGTGGACTCAATCCTTG+GGG - chr8_3:37738666-37738685 Msa1287410:intron 50.0%
TGTTTGCACCAAATGGGCAC+GGG - chr8_3:37738922-37738941 Msa1287410:intron 50.0%
ACAATCTTGACCGTCCCAGT+AGG - chr8_3:37739451-37739470 Msa1287410:exon 50.0%
CAATCTTGACCGTCCCAGTA+GGG - chr8_3:37739452-37739471 Msa1287410:exon 50.0%
TATGCTTCGCCTACCCTACT+GGG + chr8_3:37739468-37739487 None:intergenic 50.0%
ATATGCTTCGCCTACCCTAC+TGG + chr8_3:37739469-37739488 None:intergenic 50.0%
CACCCTTGTGAAACTCGAAC+CGG + chr8_3:37739631-37739650 None:intergenic 50.0%
! TTAGGGAGGGGTTGTTTCCA+TGG + chr8_3:37739689-37739708 None:intergenic 50.0%
ATGGAAACAACCCCTCCCTA+AGG - chr8_3:37739688-37739707 Msa1287410:intron 50.0%
TGTGGCATCATCCTTAGGGA+GGG + chr8_3:37739702-37739721 None:intergenic 50.0%
CAAGCATGCTCACTTGACCA+TGG + chr8_3:37739745-37739764 None:intergenic 50.0%
!! GCCATGACGGACTCTGATAG+TGG - chr8_3:37734707-37734726 Msa1287410:intron 55.0%
! GGTGCCATGGCTTGAAATGG+CGG - chr8_3:37734769-37734788 Msa1287410:intron 55.0%
! GGGGGTACATGCTCCAGATA+AGG - chr8_3:37735192-37735211 Msa1287410:intron 55.0%
GTGGAGATGGTACTGCTAGC+TGG - chr8_3:37735413-37735432 Msa1287410:intron 55.0%
! GGTACTGCTAGCTGGCTTCT+TGG - chr8_3:37735421-37735440 Msa1287410:intron 55.0%
! TGCTAGCTGGCTTCTTGGAG+TGG - chr8_3:37735426-37735445 Msa1287410:intron 55.0%
CCGAGTGGCACTGTTGCAAT+TGG + chr8_3:37735481-37735500 None:intergenic 55.0%
ATAGCATGGGGTAGCTCGAG+GGG + chr8_3:37736431-37736450 None:intergenic 55.0%
CATAGCATGGGGTAGCTCGA+GGG + chr8_3:37736432-37736451 None:intergenic 55.0%
AAAATCCCCCGCGGTAAGTG+TGG + chr8_3:37736647-37736666 None:intergenic 55.0%
! ACACTTACCGCGGGGGATTT+TGG - chr8_3:37736646-37736665 Msa1287410:CDS 55.0%
CTCACCTGCGAGGTATGTGA+AGG + chr8_3:37737836-37737855 None:intergenic 55.0%
AAACGAGTCCCGTGCCCATT+TGG + chr8_3:37738933-37738952 None:intergenic 55.0%
TGAGAGTCGACGGTGAACCA+TGG - chr8_3:37739669-37739688 Msa1287410:intron 55.0%
GTGGCATCATCCTTAGGGAG+GGG + chr8_3:37739701-37739720 None:intergenic 55.0%
CTGTGGCATCATCCTTAGGG+AGG + chr8_3:37739703-37739722 None:intergenic 55.0%
GTTGCAATTGGCGGCGGATG+AGG + chr8_3:37735469-37735488 None:intergenic 60.0%
GGCACTGTTGCAATTGGCGG+CGG + chr8_3:37735475-37735494 None:intergenic 60.0%
! GTAGCTCGAGGGGCGCAATT+GGG + chr8_3:37736421-37736440 None:intergenic 60.0%
GCATAGCATGGGGTAGCTCG+AGG + chr8_3:37736433-37736452 None:intergenic 60.0%
GACGGCTACCACACTTACCG+CGG - chr8_3:37736636-37736655 Msa1287410:CDS 60.0%
ACGGCTACCACACTTACCGC+GGG - chr8_3:37736637-37736656 Msa1287410:CDS 60.0%
GCACGGGACTCGTTTAGCAC+AGG - chr8_3:37738938-37738957 Msa1287410:intron 60.0%
CTTGACCGTCCCAGTAGGGT+AGG - chr8_3:37739456-37739475 Msa1287410:exon 60.0%
CTTCGCCTACCCTACTGGGA+CGG + chr8_3:37739464-37739483 None:intergenic 60.0%
! GCAACAGTGCCACTCGGGAC+AGG - chr8_3:37735484-37735503 Msa1287410:intron 65.0%
! GGTAGCTCGAGGGGCGCAAT+TGG + chr8_3:37736422-37736441 None:intergenic 65.0%
CGGCTACCACACTTACCGCG+GGG - chr8_3:37736638-37736657 Msa1287410:CDS 65.0%
GGCTACCACACTTACCGCGG+GGG - chr8_3:37736639-37736658 Msa1287410:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 37733802 37740037 37733802 ID=Msa1287410;Name=Msa1287410
chr8_3 mRNA 37733802 37740037 37733802 ID=Msa1287410-mRNA-1;Parent=Msa1287410;Name=Msa1287410-mRNA-1;_AED=0.10;_eAED=0.10;_QI=153|1|1|1|0.91|0.84|13|91|488
chr8_3 exon 37733802 37734222 37733802 ID=Msa1287410-mRNA-1:exon:10830;Parent=Msa1287410-mRNA-1
chr8_3 exon 37734880 37734996 37734880 ID=Msa1287410-mRNA-1:exon:10829;Parent=Msa1287410-mRNA-1
chr8_3 exon 37735123 37735210 37735123 ID=Msa1287410-mRNA-1:exon:10828;Parent=Msa1287410-mRNA-1
chr8_3 exon 37735989 37736063 37735989 ID=Msa1287410-mRNA-1:exon:10827;Parent=Msa1287410-mRNA-1
chr8_3 exon 37736625 37736692 37736625 ID=Msa1287410-mRNA-1:exon:10826;Parent=Msa1287410-mRNA-1
chr8_3 exon 37736929 37737011 37736929 ID=Msa1287410-mRNA-1:exon:10825;Parent=Msa1287410-mRNA-1
chr8_3 exon 37737155 37737203 37737155 ID=Msa1287410-mRNA-1:exon:10824;Parent=Msa1287410-mRNA-1
chr8_3 exon 37737346 37737469 37737346 ID=Msa1287410-mRNA-1:exon:10823;Parent=Msa1287410-mRNA-1
chr8_3 exon 37737888 37737973 37737888 ID=Msa1287410-mRNA-1:exon:10822;Parent=Msa1287410-mRNA-1
chr8_3 exon 37738305 37738433 37738305 ID=Msa1287410-mRNA-1:exon:10821;Parent=Msa1287410-mRNA-1
chr8_3 exon 37738536 37738658 37738536 ID=Msa1287410-mRNA-1:exon:10820;Parent=Msa1287410-mRNA-1
chr8_3 exon 37739269 37739479 37739269 ID=Msa1287410-mRNA-1:exon:10819;Parent=Msa1287410-mRNA-1
chr8_3 exon 37739901 37740037 37739901 ID=Msa1287410-mRNA-1:exon:10818;Parent=Msa1287410-mRNA-1
chr8_3 five_prime_UTR 37739901 37740037 37739901 ID=Msa1287410-mRNA-1:five_prime_utr;Parent=Msa1287410-mRNA-1
chr8_3 five_prime_UTR 37739464 37739479 37739464 ID=Msa1287410-mRNA-1:five_prime_utr;Parent=Msa1287410-mRNA-1
chr8_3 CDS 37739269 37739463 37739269 ID=Msa1287410-mRNA-1:cds;Parent=Msa1287410-mRNA-1
chr8_3 CDS 37738536 37738658 37738536 ID=Msa1287410-mRNA-1:cds;Parent=Msa1287410-mRNA-1
chr8_3 CDS 37738305 37738433 37738305 ID=Msa1287410-mRNA-1:cds;Parent=Msa1287410-mRNA-1
chr8_3 CDS 37737888 37737973 37737888 ID=Msa1287410-mRNA-1:cds;Parent=Msa1287410-mRNA-1
chr8_3 CDS 37737346 37737469 37737346 ID=Msa1287410-mRNA-1:cds;Parent=Msa1287410-mRNA-1
chr8_3 CDS 37737155 37737203 37737155 ID=Msa1287410-mRNA-1:cds;Parent=Msa1287410-mRNA-1
chr8_3 CDS 37736929 37737011 37736929 ID=Msa1287410-mRNA-1:cds;Parent=Msa1287410-mRNA-1
chr8_3 CDS 37736625 37736692 37736625 ID=Msa1287410-mRNA-1:cds;Parent=Msa1287410-mRNA-1
chr8_3 CDS 37735989 37736063 37735989 ID=Msa1287410-mRNA-1:cds;Parent=Msa1287410-mRNA-1
chr8_3 CDS 37735123 37735210 37735123 ID=Msa1287410-mRNA-1:cds;Parent=Msa1287410-mRNA-1
chr8_3 CDS 37734880 37734996 37734880 ID=Msa1287410-mRNA-1:cds;Parent=Msa1287410-mRNA-1
chr8_3 CDS 37733893 37734222 37733893 ID=Msa1287410-mRNA-1:cds;Parent=Msa1287410-mRNA-1
chr8_3 three_prime_UTR 37733802 37733892 37733802 ID=Msa1287410-mRNA-1:three_prime_utr;Parent=Msa1287410-mRNA-1
Gene Sequence

>Msa1287410

ATGGGTGATGGAAATAGCATAAGAACATTGAAGGAATTTACGATACCGGATTATATACTATTGCCGGGAACTGCGAATAAAGGTGTTACTCATTTACCTGCATGTCCTGTCGTTGTTTTCATTAACTCCAAAAGTGGTGGTCAGCTTGGTGGAGAACTTCTTGTTACCTATAGTTCACTTCTTAACCAAAATCAGGTCTATGATTTGGGGGTACATGCTCCAGATAAGGTGCTGCATCAACTTTATGCTAATTTGGAAAAGCTAAAACACAATGGAGATCATTACGCTGCTGAAATTCAGAATAGGTTGAGAATAATTGTTGCAGGTGGAGATGGTACTGCTAGCTGGCTTCTTGGAGTGGTATCTGATCTTAAATTACCTCATCCGCCGCCAATTGCAACAGTGCCACTCGGGACAGGAAATAATCTCCCCTTTGCATTTGGATGGGGAAAGAAAAATCCTACCACAGACATCCAATCAGTGGCATCATTTCTGAATCATGTAAAAGCTGCAAAGGAAATGAAAATAGACAGCTGGCATATTATAATGCGAATGAAAGCTCCAAAAGAAGGTTCATGTGACCCAATTGCGCCCCTCGAGCTACCCCATGCTATGCATGCATTTAATCGAGTCTCTTCAACAGATAAACTAAACTTGGACGGCTACCACACTTACCGCGGGGGATTTTGGAACTATTTTAGCATGGGAATGGATGCGCAAGTATCATATGCATTTCATTCTGAGAGGAAGTTACATCCTGAAAAGTTTAAAAACCAGTTATATAATCAGAGTGCTTATCTGAAGCTTGGATGTACACAAGGCTGGTTCATGAGCTCTTTATTTCAATCATCTTCCAGGAATATTGCTCAGCTGACAAAGGTAAAGATAATGAAAAGGCATGGTCAATGGGAAGACCTTCACATACCTCGCAGCATACGATCAATAGTTTGCCTAAACTTGCCCAGCTTTTCTGGTGGACTCAATCCTTGGGGAAAACCAAACAGAAAGAAGTCAATCTATAGAGACCTGACTCTTCCATTTGTTGATGATGGGCTATTTGAAGTGGTTGGTTTTAGAGATGCTTGGCATGGTCTTGTTTTGTTTGCACCAAATGGGCACGGGACTCGTTTAGCACAGGCCAGCAAAATCCGGTTCGAGTTTCACAAGGGTGCAGCTGACTGTACATTCATGAGAGTCGACGGTGAACCATGGAAACAACCCCTCCCTAAGGATGATGCCACAGTTGTTGTTGAAATATCTCACCATGGTCAAGTGAGCATGCTTGCCACCCCATTATGTCGTTCTAAAAGTATGCATGACGACAATCCTTCTTCACCTTCTATTGATCATGAAGATGATGATAGTAGTGATGACGAATTAGACGAAAGTAGTGAAGAACGTCGCAAGTTTGGTGCAGCCGAGACATTCAAGTATACAGAGGGAGTTGTTATGTCTTCTTTGAGTTAG

Protein sequence

>Msa1287410

MGDGNSIRTLKEFTIPDYILLPGTANKGVTHLPACPVVVFINSKSGGQLGGELLVTYSSLLNQNQVYDLGVHAPDKVLHQLYANLEKLKHNGDHYAAEIQNRLRIIVAGGDGTASWLLGVVSDLKLPHPPPIATVPLGTGNNLPFAFGWGKKNPTTDIQSVASFLNHVKAAKEMKIDSWHIIMRMKAPKEGSCDPIAPLELPHAMHAFNRVSSTDKLNLDGYHTYRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLYNQSAYLKLGCTQGWFMSSLFQSSSRNIAQLTKVKIMKRHGQWEDLHIPRSIRSIVCLNLPSFSGGLNPWGKPNRKKSIYRDLTLPFVDDGLFEVVGFRDAWHGLVLFAPNGHGTRLAQASKIRFEFHKGAADCTFMRVDGEPWKQPLPKDDATVVVEISHHGQVSMLATPLCRSKSMHDDNPSSPSIDHEDDDSSDDELDESSEERRKFGAAETFKYTEGVVMSSLS*