AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1202750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1202750 MtrunA17_Chr8g0372911 95.100 449 17 1 1 444 1 449 0.0 850
Msa1202750 MtrunA17_Chr5g0404591 59.688 449 164 7 1 443 1 438 4.90e-172 489
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1202750 AT3G50910.1 44.273 454 214 13 1 429 1 440 6.19e-99 303
Msa1202750 AT5G66480.1 37.716 464 244 11 1 440 1 443 7.78e-77 246

Find 164 sgRNAs with CRISPR-Local

Find 574 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGTTCTTTGAGTCTAAT+TGG 0.155116 8_1:+56396574 None:intergenic
TTGAGTATGTGCATAAATAT+TGG 0.200080 8_1:-56395065 Msa1202750:three_prime_UTR
AAAGCTAGTGCCGTTGAATT+TGG 0.227432 8_1:-56397468 Msa1202750:CDS
TATTTGTTTGTGAGCGAAAA+TGG 0.228867 8_1:+56398686 None:intergenic
CTCTCGAGCTTCTTCGAATT+AGG 0.273545 8_1:+56397932 None:intergenic
CTTTGAGATTTCTCGACTAT+TGG 0.277457 8_1:-56396556 Msa1202750:CDS
TGCACAACCTGGTAGAATTC+TGG 0.303045 8_1:-56394784 Msa1202750:three_prime_UTR
TAGAATTCTGGTTTCTAATC+TGG 0.308966 8_1:-56394772 Msa1202750:three_prime_UTR
TAGATGGTTGATTAGTAAAA+TGG 0.310380 8_1:-56395003 Msa1202750:three_prime_UTR
TGAGTATGTGCATAAATATT+GGG 0.314929 8_1:-56395064 Msa1202750:three_prime_UTR
CCTTCCACTGCAAGTCTAGA+TGG 0.346743 8_1:-56395019 Msa1202750:three_prime_UTR
TAGGAGGCAGAAATGGATTT+GGG 0.351278 8_1:-56395324 Msa1202750:CDS
CTGAGACATCTCTCTATTCA+TGG 0.373102 8_1:+56396512 None:intergenic
TAACAAATTACTTTATCATC+AGG 0.377517 8_1:+56394716 None:intergenic
TGCTCCTCCTTAAGAGGCTC+GGG 0.380542 8_1:+56397599 None:intergenic
CTTAAGGAGGAGCAAGATAA+TGG 0.382070 8_1:-56397590 Msa1202750:CDS
ATGTTTGTCAGGCATGGTTA+TGG 0.382533 8_1:-56394676 Msa1202750:three_prime_UTR
AAAGTTCTTTGAGTCTAATT+GGG 0.386719 8_1:+56396575 None:intergenic
ATGCTGAATTGCGTGAAATA+AGG 0.388730 8_1:-56396860 Msa1202750:CDS
GAATCTTGAAGAGGAGAATC+TGG 0.389268 8_1:+56397812 None:intergenic
TTACTGCTATAGCATTTGAT+AGG 0.393299 8_1:-56398015 Msa1202750:CDS
TGCAGACCATGATGAGGTTT+CGG 0.393660 8_1:-56395222 Msa1202750:CDS
CTAGGAGGCAGAAATGGATT+TGG 0.396692 8_1:-56395325 Msa1202750:CDS
ATTACTACTGCCATTGTACT+TGG 0.398122 8_1:-56395296 Msa1202750:CDS
TGTGAACCCCGAGCCTCTTA+AGG 0.401118 8_1:-56397606 Msa1202750:CDS
TTATCTTGCTCCTCCTTAAG+AGG 0.404003 8_1:+56397593 None:intergenic
AGCTTCTTCGAATTAGGAAC+AGG 0.421617 8_1:+56397938 None:intergenic
AGTGTTGGTGGAATATTAGT+TGG 0.424188 8_1:+56395184 None:intergenic
TGATACTGTGGTTTCTAGTT+CGG 0.424498 8_1:-56397651 Msa1202750:CDS
ACACTAACTTTGCCTAGTTA+TGG 0.427381 8_1:-56395166 Msa1202750:three_prime_UTR
ATCAGCAATGGTGGCGATGT+TGG 0.427580 8_1:-56397545 Msa1202750:CDS
GATGTTGATCCTTTACTTGA+TGG 0.428020 8_1:+56395245 None:intergenic
ATAAAGTAATTTGTTAACTC+TGG 0.432687 8_1:-56394709 Msa1202750:three_prime_UTR
GAAGGTCTAGGAGGCAGAAA+TGG 0.437209 8_1:-56395331 Msa1202750:CDS
GCGGCTTCTCAAGAGTTTCT+CGG 0.438607 8_1:-56397735 Msa1202750:CDS
AATAAGGTTGAGTCTATTGA+TGG 0.440745 8_1:-56396844 Msa1202750:CDS
TCAGCAATGGTGGCGATGTT+GGG 0.441562 8_1:-56397544 Msa1202750:CDS
GAAGTATAACCATGTTTGTC+AGG 0.441883 8_1:-56394687 Msa1202750:three_prime_UTR
ACCATTGCTGATACTAACTT+TGG 0.442039 8_1:+56397556 None:intergenic
TCTTCTGATGGTGGCACTCA+AGG 0.443106 8_1:-56396906 Msa1202750:CDS
GAAAGTAGTAGTGATCCTAA+TGG 0.452649 8_1:-56397503 Msa1202750:CDS
AAGCAGGAGGTTTGTGAAGA+AGG 0.454450 8_1:-56397695 Msa1202750:CDS
AGAAGGAGTGGAAAAGGACT+AGG 0.458892 8_1:+56398624 None:intergenic
GAGCCGGGAGGTTCGAGGGC+GGG 0.460058 8_1:-56397986 Msa1202750:CDS
GGAAGAAGAAGGAGTGGAAA+AGG 0.462174 8_1:+56398618 None:intergenic
CTTATTCTGCTCGCAAGAAT+CGG 0.464729 8_1:+56394935 None:intergenic
TGCTTGTGTCATATTTCAGT+TGG 0.465533 8_1:-56394747 Msa1202750:three_prime_UTR
CGGGGTTCACACAAGTAACT+TGG 0.466762 8_1:+56397618 None:intergenic
TGTGAAGAAGGAAATGTTAG+TGG 0.471437 8_1:-56397683 Msa1202750:CDS
TTGCTCCTCCTTAAGAGGCT+CGG 0.471781 8_1:+56397598 None:intergenic
CTAGGCAAAGTTAGTGTTGG+TGG 0.473411 8_1:+56395172 None:intergenic
TCTGGAAGCGGCGTCACCTC+AGG 0.478272 8_1:+56397830 None:intergenic
GTTGAAGATTTATATTCCAC+AGG 0.486398 8_1:-56398717 Msa1202750:five_prime_UTR
GGCCAATGTACAGGCTAAGC+AGG 0.488598 8_1:-56397711 Msa1202750:CDS
GGAGAGAGATGGTGAGAGTG+AGG 0.489035 8_1:-56397447 Msa1202750:CDS
CGTTTGTGATTGATGATGTA+AGG 0.495077 8_1:+56397767 None:intergenic
GATTTATATTCCACAGGTGT+GGG 0.495377 8_1:-56398711 Msa1202750:five_prime_UTR
GTGTCATATTTCAGTTGGCT+CGG 0.501568 8_1:-56394742 Msa1202750:three_prime_UTR
ATTTGATAGGTTAATTGAGC+CGG 0.502367 8_1:-56398002 Msa1202750:CDS
GCAATAGCACTAAGATCTGC+AGG 0.502369 8_1:+56396723 None:intergenic
AGAGAAGGGTTATCTTCTGT+TGG 0.502369 8_1:-56396756 Msa1202750:CDS
TAGAGTGACGGCTTTAATTG+AGG 0.505166 8_1:+56397860 None:intergenic
ATGTTGATCCTTTACTTGAT+GGG 0.505404 8_1:+56395246 None:intergenic
ATATCAAACGCCATTGGAAG+AGG 0.513599 8_1:-56396633 Msa1202750:CDS
GTGAGAGACAAAGAAGGTCT+AGG 0.513662 8_1:-56395343 Msa1202750:CDS
TCATGGTCTCATAGTAATGA+AGG 0.513716 8_1:+56396529 None:intergenic
CTTTGCAGAGCGTTCTGTGC+CGG 0.520712 8_1:+56397355 None:intergenic
TGCTGACATAGATCATCTAC+AGG 0.523569 8_1:+56396675 None:intergenic
AGGAGGAGTAGTGAACCAAC+TGG 0.523857 8_1:-56397911 Msa1202750:CDS
TGACCCGCCCTCGAACCTCC+CGG 0.524844 8_1:+56397983 None:intergenic
TTCTTTCTAGCAGTTCCAGT+TGG 0.526672 8_1:+56397896 None:intergenic
TTTCTCGGAGGCCAATGTAC+AGG 0.527126 8_1:-56397720 Msa1202750:CDS
AAAGAGAGAGATAGTTGTTG+TGG 0.528415 8_1:-56398749 Msa1202750:five_prime_UTR
ACTGTGGTTTCTAGTTCGGC+TGG 0.529574 8_1:-56397647 Msa1202750:CDS
TGTAGATGATCTATGTCAGC+AGG 0.531232 8_1:-56396673 Msa1202750:CDS
GTCAGCAGGTTTACATTGCT+AGG 0.534842 8_1:-56396659 Msa1202750:CDS
ATAACCATGTTTGTCAGGCA+TGG 0.538893 8_1:-56394682 Msa1202750:three_prime_UTR
AGGAACAGGCATCGAGGTGG+AGG 0.539199 8_1:+56397952 None:intergenic
TTTGATAGGTTAATTGAGCC+GGG 0.540203 8_1:-56398001 Msa1202750:CDS
AACAAATTACTTTATCATCA+GGG 0.542841 8_1:+56394717 None:intergenic
TATTGCAGAAGGTGGGCGGC+TGG 0.543377 8_1:-56396706 Msa1202750:intron
AGATTTATATTCCACAGGTG+TGG 0.543602 8_1:-56398712 Msa1202750:five_prime_UTR
TTAAAAGCATGCAAAGTCAG+TGG 0.548243 8_1:-56396788 Msa1202750:CDS
AAATCTCACCTACTGCCTCC+TGG 0.550290 8_1:+56396484 None:intergenic
TTTAATTGAGGTCGAGTAGG+CGG 0.554278 8_1:+56397872 None:intergenic
AGGAACTGCTAGGGCTGAGG+CGG 0.561467 8_1:-56396613 Msa1202750:CDS
TCTCCTCTCCTACCATAACT+AGG 0.563984 8_1:+56395154 None:intergenic
TCTTGAGAAGCCGCGGCCCA+CGG 0.565601 8_1:+56397744 None:intergenic
TTCTTCCCCACGCAACCACA+AGG 0.568073 8_1:-56398602 Msa1202750:intron
TCGTATCTCCCATCAAGTAA+AGG 0.569425 8_1:-56395254 Msa1202750:CDS
TATGAGTTTCACAAGTTACA+CGG 0.569887 8_1:-56397393 Msa1202750:CDS
GCAAAATAATTTGTACTGAA+CGG 0.570572 8_1:+56395041 None:intergenic
AAGAGGAACTGCTAGGGCTG+AGG 0.574289 8_1:-56396616 Msa1202750:CDS
AGAGATGTCTCAGAGGAACC+AGG 0.576661 8_1:-56396502 Msa1202750:CDS
CCTGTAGAACTCTCTTCTGA+TGG 0.577110 8_1:-56396918 Msa1202750:intron
ACACGCTCTGTGAAATGTAT+CGG 0.577926 8_1:+56394903 None:intergenic
TAAAAGCATGCAAAGTCAGT+GGG 0.579631 8_1:-56396787 Msa1202750:CDS
CCTAGCAGTTCCTCTTCCAA+TGG 0.581191 8_1:+56396623 None:intergenic
GCTATGATGCATGCACAACC+TGG 0.582516 8_1:-56394795 Msa1202750:three_prime_UTR
TGTCATGTTTAGAGACGGCA+AGG 0.583208 8_1:-56395367 Msa1202750:intron
TAACTTTGCCTAGTTATGGT+AGG 0.584015 8_1:-56395162 Msa1202750:three_prime_UTR
GGCTTTAATTGAGGTCGAGT+AGG 0.589089 8_1:+56397869 None:intergenic
CCATCTCTCTCCAAATTCAA+CGG 0.589105 8_1:+56397458 None:intergenic
CAGTGGGAGAGAATCAGAGA+AGG 0.590426 8_1:-56396771 Msa1202750:CDS
GAGGTTTCGGAACACGATGA+CGG 0.590550 8_1:-56395209 Msa1202750:CDS
TCAACCATCTAGACTTGCAG+TGG 0.593282 8_1:+56395015 None:intergenic
GGTTGATTAGTAAAATGGTA+TGG 0.595405 8_1:-56394998 Msa1202750:three_prime_UTR
CACAAGTTACACGGATGGAG+AGG 0.595436 8_1:-56397384 Msa1202750:CDS
TAACTAGGCAAAGTTAGTGT+TGG 0.596793 8_1:+56395169 None:intergenic
TGAAGAGGAGAATCTGGAAG+CGG 0.596863 8_1:+56397818 None:intergenic
CAGAGGAACCAGGAGGCAGT+AGG 0.597788 8_1:-56396492 Msa1202750:intron
GTAGAACTCTCTTCTGATGG+TGG 0.597960 8_1:-56396915 Msa1202750:intron
CCATCTAGACTTGCAGTGGA+AGG 0.597977 8_1:+56395019 None:intergenic
TTGCCTAGTTATGGTAGGAG+AGG 0.598755 8_1:-56395157 Msa1202750:three_prime_UTR
AGTTTCACAAGTTACACGGA+TGG 0.602225 8_1:-56397389 Msa1202750:CDS
AGGTTCATATCAAACGCCAT+TGG 0.605043 8_1:-56396639 Msa1202750:CDS
CTCCTGCTTAGCCTGTACAT+TGG 0.606804 8_1:+56397709 None:intergenic
ATTCGAAGAAGCTCGAGAGG+AGG 0.607096 8_1:-56397928 Msa1202750:CDS
CATTGGAAGAGGAACTGCTA+GGG 0.609694 8_1:-56396622 Msa1202750:CDS
GAGGAAGTTGAATCTTGAAG+AGG 0.609779 8_1:+56397803 None:intergenic
ACGGATGGAGAGGATAATAC+CGG 0.610530 8_1:-56397374 Msa1202750:CDS
TGATCCTAATGGAAAGCATG+TGG 0.611128 8_1:-56397492 Msa1202750:CDS
CGTGTTCCGAAACCTCATCA+TGG 0.613190 8_1:+56395216 None:intergenic
AAGCGGCGTCACCTCAGGAG+TGG 0.619420 8_1:+56397835 None:intergenic
TTGATGATGTAAGGAGAAGG+CGG 0.620549 8_1:+56397776 None:intergenic
ACCAAAGTTAGTATCAGCAA+TGG 0.625369 8_1:-56397557 Msa1202750:CDS
CCATTGGAAGAGGAACTGCT+AGG 0.626094 8_1:-56396623 Msa1202750:CDS
ATCATCAATCACAAACGCCG+TGG 0.627424 8_1:-56397761 Msa1202750:CDS
TGGTTGCGTGGGGAAGAAGA+AGG 0.631552 8_1:+56398607 None:intergenic
TGCTGTAGTACCAAGTACAA+TGG 0.632131 8_1:+56395286 None:intergenic
AAAGTTAGTATCAGCAATGG+TGG 0.632304 8_1:-56397554 Msa1202750:CDS
CCGTTGAATTTGGAGAGAGA+TGG 0.634551 8_1:-56397458 Msa1202750:CDS
CTAATTCGAAGAAGCTCGAG+AGG 0.634698 8_1:-56397931 Msa1202750:CDS
GCGTGGGGAAGAAGAAGGAG+TGG 0.635550 8_1:+56398612 None:intergenic
AATGCTATAGCAGTAAATGT+CGG 0.635938 8_1:+56398022 None:intergenic
GTAAGGAGAAGGCGGAAACG+AGG 0.636635 8_1:+56397784 None:intergenic
AGGAGGCAGAAATGGATTTG+GGG 0.642757 8_1:-56395323 Msa1202750:CDS
ATAACCATGCCTGACAAACA+TGG 0.643269 8_1:+56394678 None:intergenic
TCAGGAGTGGCATAGAGTGA+CGG 0.645583 8_1:+56397848 None:intergenic
GCTCCTCCTTAAGAGGCTCG+GGG 0.646053 8_1:+56397600 None:intergenic
AGTGGGAGAGAATCAGAGAA+GGG 0.650304 8_1:-56396770 Msa1202750:CDS
GAACCCCGAGCCTCTTAAGG+AGG 0.653246 8_1:-56397603 Msa1202750:CDS
TGATTGATGATGTAAGGAGA+AGG 0.653569 8_1:+56397773 None:intergenic
TCATCAATCACAAACGCCGT+GGG 0.662353 8_1:-56397760 Msa1202750:CDS
TTAGAAACCAGAATTCTACC+AGG 0.664028 8_1:+56394777 None:intergenic
AACATCTGCAGACCATGATG+AGG 0.664570 8_1:-56395228 Msa1202750:CDS
AGAGACAAAGAAGGTCTAGG+AGG 0.667738 8_1:-56395340 Msa1202750:CDS
TTGGTACTACAGCAATAGCA+TGG 0.668403 8_1:-56395277 Msa1202750:CDS
CAAGGCGTGAGAGACAAAGA+AGG 0.669676 8_1:-56395349 Msa1202750:CDS
GTCACTCTATGCCACTCCTG+AGG 0.670762 8_1:-56397846 Msa1202750:CDS
CAATGTACAGGCTAAGCAGG+AGG 0.671371 8_1:-56397708 Msa1202750:CDS
GAAAATGGTTCCCACACCTG+TGG 0.677073 8_1:+56398701 None:intergenic
GTGCTATTGCAGAAGGTGGG+CGG 0.677325 8_1:-56396710 Msa1202750:intron
TGGTAAGAGCTGTGATACTG+TGG 0.679192 8_1:-56397663 Msa1202750:CDS
GAGAAACTCTTGAGAAGCCG+CGG 0.680768 8_1:+56397737 None:intergenic
TGATGAATTAGAATGCTCGA+AGG 0.685291 8_1:+56394862 None:intergenic
ATTAGGAACAGGCATCGAGG+TGG 0.685946 8_1:+56397949 None:intergenic
TGAATAGAGAGATGTCTCAG+AGG 0.688163 8_1:-56396509 Msa1202750:CDS
CGAATTAGGAACAGGCATCG+AGG 0.698553 8_1:+56397946 None:intergenic
GCTTCTCAAGAGTTTCTCGG+AGG 0.702405 8_1:-56397732 Msa1202750:CDS
ATAGAACTCATAGTATCACG+TGG 0.720038 8_1:+56397413 None:intergenic
TGGTATTTATCTTATCAACG+TGG 0.737675 8_1:+56394974 None:intergenic
GATGTCTCAGAGGAACCAGG+AGG 0.739860 8_1:-56396499 Msa1202750:CDS
GATAGGTTAATTGAGCCGGG+AGG 0.794072 8_1:-56397998 Msa1202750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTTTTGTTTTGAATT+GGG + chr8_1:56394882-56394901 None:intergenic 10.0%
!!! ATTAATTTTTTGTTTTGAAT+TGG + chr8_1:56394883-56394902 None:intergenic 10.0%
!! ATTTAAATTTAATTCAATCA+TGG - chr8_1:56395209-56395228 Msa1202750:CDS 10.0%
!!! TATTTAAATTTAATTAGCTT+TGG - chr8_1:56395277-56395296 Msa1202750:CDS 10.0%
!!! TTTTGTTTTTCTAAATATTT+TGG - chr8_1:56397697-56397716 Msa1202750:CDS 10.0%
!!! TTAATTTTTTGTTTTGAATT+GGG + chr8_1:56394882-56394901 None:intergenic 10.0%
!!! ATTAATTTTTTGTTTTGAAT+TGG + chr8_1:56394883-56394902 None:intergenic 10.0%
!! ATTTAAATTTAATTCAATCA+TGG - chr8_1:56395209-56395228 Msa1202750:CDS 10.0%
!!! TATTTAAATTTAATTAGCTT+TGG - chr8_1:56395277-56395296 Msa1202750:CDS 10.0%
!!! TTTTGTTTTTCTAAATATTT+TGG - chr8_1:56397697-56397716 Msa1202750:CDS 10.0%
!!! TAATTTTTTGTTTTGAATTG+GGG + chr8_1:56394881-56394900 None:intergenic 15.0%
!! AAAGATAGAAAAATTGAAAT+CGG + chr8_1:56394974-56394993 None:intergenic 15.0%
!!! TATCTTTTTTTTTTAGCTTT+TGG - chr8_1:56394987-56395006 Msa1202750:three_prime_UTR 15.0%
!! TTAAAATATGAAAAGCTAAA+TGG + chr8_1:56396224-56396243 None:intergenic 15.0%
!!! CATTTTAAATGCATAATAAT+GGG + chr8_1:56397092-56397111 None:intergenic 15.0%
!!! TCATTTTAAATGCATAATAA+TGG + chr8_1:56397093-56397112 None:intergenic 15.0%
!! TTATTTACATAATCAAACAT+TGG + chr8_1:56397309-56397328 None:intergenic 15.0%
!! ATGTAATATACTATGTTAAT+TGG - chr8_1:56397330-56397349 Msa1202750:CDS 15.0%
!! TGTAATATACTATGTTAATT+GGG - chr8_1:56397331-56397350 Msa1202750:CDS 15.0%
!! TATCTACATTTCATAATAAA+TGG + chr8_1:56397427-56397446 None:intergenic 15.0%
!! ACTAAACAATAAATGATAAA+CGG + chr8_1:56397544-56397563 None:intergenic 15.0%
!!! TAATTTTTTGTTTTGAATTG+GGG + chr8_1:56394881-56394900 None:intergenic 15.0%
!! AAAGATAGAAAAATTGAAAT+CGG + chr8_1:56394974-56394993 None:intergenic 15.0%
!!! TATCTTTTTTTTTTAGCTTT+TGG - chr8_1:56394987-56395006 Msa1202750:three_prime_UTR 15.0%
!! TTAAAATATGAAAAGCTAAA+TGG + chr8_1:56396224-56396243 None:intergenic 15.0%
!!! CATTTTAAATGCATAATAAT+GGG + chr8_1:56397092-56397111 None:intergenic 15.0%
!!! TCATTTTAAATGCATAATAA+TGG + chr8_1:56397093-56397112 None:intergenic 15.0%
!! TTATTTACATAATCAAACAT+TGG + chr8_1:56397309-56397328 None:intergenic 15.0%
!! ATGTAATATACTATGTTAAT+TGG - chr8_1:56397330-56397349 Msa1202750:CDS 15.0%
!! TGTAATATACTATGTTAATT+GGG - chr8_1:56397331-56397350 Msa1202750:CDS 15.0%
!! TATCTACATTTCATAATAAA+TGG + chr8_1:56397427-56397446 None:intergenic 15.0%
!! ACTAAACAATAAATGATAAA+CGG + chr8_1:56397544-56397563 None:intergenic 15.0%
!! ATGAATAAATAAAAACCTTG+TGG + chr8_1:56394820-56394839 None:intergenic 20.0%
!! ATTCAATAGAGTTTGTAATT+CGG - chr8_1:56396185-56396204 Msa1202750:intron 20.0%
!! ATCAAATCAAAGACAAATTT+AGG + chr8_1:56396321-56396340 None:intergenic 20.0%
!!! AATGACAAATTTAGGATATT+TGG + chr8_1:56396346-56396365 None:intergenic 20.0%
!! GATAAATCAATGACAAATTT+AGG + chr8_1:56396354-56396373 None:intergenic 20.0%
!! ATATAATTATGATAAAGCGA+AGG - chr8_1:56396392-56396411 Msa1202750:intron 20.0%
!!! ATAATAATGGGAATTTTTGT+TGG + chr8_1:56397080-56397099 None:intergenic 20.0%
!!! CATTTATTGTTTAGTTTTTG+TGG - chr8_1:56397549-56397568 Msa1202750:CDS 20.0%
!!! TGATTTGAACATAATTTTAG+TGG - chr8_1:56397847-56397866 Msa1202750:CDS 20.0%
!!! GATTTGAACATAATTTTAGT+GGG - chr8_1:56397848-56397867 Msa1202750:CDS 20.0%
!!! ATACTTCAATTACAATTTTG+CGG - chr8_1:56398312-56398331 Msa1202750:intron 20.0%
!! AACAAATTACTTTATCATCA+GGG + chr8_1:56398690-56398709 None:intergenic 20.0%
!! TAACAAATTACTTTATCATC+AGG + chr8_1:56398691-56398710 None:intergenic 20.0%
!!! ATAAAGTAATTTGTTAACTC+TGG - chr8_1:56398695-56398714 Msa1202750:five_prime_UTR 20.0%
!! ATGAATAAATAAAAACCTTG+TGG + chr8_1:56394820-56394839 None:intergenic 20.0%
!! ATTCAATAGAGTTTGTAATT+CGG - chr8_1:56396185-56396204 Msa1202750:intron 20.0%
!! ATCAAATCAAAGACAAATTT+AGG + chr8_1:56396321-56396340 None:intergenic 20.0%
!!! AATGACAAATTTAGGATATT+TGG + chr8_1:56396346-56396365 None:intergenic 20.0%
!! GATAAATCAATGACAAATTT+AGG + chr8_1:56396354-56396373 None:intergenic 20.0%
!! ATATAATTATGATAAAGCGA+AGG - chr8_1:56396392-56396411 Msa1202750:intron 20.0%
!!! ATAATAATGGGAATTTTTGT+TGG + chr8_1:56397080-56397099 None:intergenic 20.0%
!!! CATTTATTGTTTAGTTTTTG+TGG - chr8_1:56397549-56397568 Msa1202750:CDS 20.0%
!!! TGATTTGAACATAATTTTAG+TGG - chr8_1:56397847-56397866 Msa1202750:CDS 20.0%
!!! GATTTGAACATAATTTTAGT+GGG - chr8_1:56397848-56397867 Msa1202750:CDS 20.0%
!!! ATACTTCAATTACAATTTTG+CGG - chr8_1:56398312-56398331 Msa1202750:intron 20.0%
!! AACAAATTACTTTATCATCA+GGG + chr8_1:56398690-56398709 None:intergenic 20.0%
!! TAACAAATTACTTTATCATC+AGG + chr8_1:56398691-56398710 None:intergenic 20.0%
!!! ATAAAGTAATTTGTTAACTC+TGG - chr8_1:56398695-56398714 Msa1202750:five_prime_UTR 20.0%
! ATAATAAGAAACGAGAAATG+AGG + chr8_1:56394857-56394876 None:intergenic 25.0%
! GAAGAAAAGGAAAATGAAAA+CGG + chr8_1:56395052-56395071 None:intergenic 25.0%
!!! AATTATGATTTGTTTCTGTC+CGG - chr8_1:56395099-56395118 Msa1202750:three_prime_UTR 25.0%
! TCCTCAATTTGTATTTGTTT+AGG - chr8_1:56395164-56395183 Msa1202750:three_prime_UTR 25.0%
! ACCTAAACAAATACAAATTG+AGG + chr8_1:56395168-56395187 None:intergenic 25.0%
! TCTATTGAATAAAACATCTG+TGG + chr8_1:56396175-56396194 None:intergenic 25.0%
! AAAGTTCTTTGAGTCTAATT+GGG + chr8_1:56396832-56396851 None:intergenic 25.0%
! CTACATTTCATAATAAATGG+TGG + chr8_1:56397424-56397443 None:intergenic 25.0%
!! AAGATATATGGTTTGTCATT+TGG + chr8_1:56397518-56397537 None:intergenic 25.0%
! GTAATAATACTAGTGAAGTA+TGG - chr8_1:56397583-56397602 Msa1202750:CDS 25.0%
! ATGATATGTAGATAGGTAAA+TGG + chr8_1:56397813-56397832 None:intergenic 25.0%
!!! CACAGATTTTTAATTCTCTA+GGG - chr8_1:56397877-56397896 Msa1202750:CDS 25.0%
! GACATATATTTAAGCAAACA+AGG + chr8_1:56397964-56397983 None:intergenic 25.0%
! ATGACATAAATGAGAAAAAG+TGG + chr8_1:56398013-56398032 None:intergenic 25.0%
! TTGAGTATGTGCATAAATAT+TGG - chr8_1:56398339-56398358 Msa1202750:intron 25.0%
! TGAGTATGTGCATAAATATT+GGG - chr8_1:56398340-56398359 Msa1202750:intron 25.0%
!! GCAAAATAATTTGTACTGAA+CGG + chr8_1:56398366-56398385 None:intergenic 25.0%
! TAGATGGTTGATTAGTAAAA+TGG - chr8_1:56398401-56398420 Msa1202750:intron 25.0%
! TCGGTAAGAAAAAAACTATA+TGG + chr8_1:56398453-56398472 None:intergenic 25.0%
! ATAATAAGAAACGAGAAATG+AGG + chr8_1:56394857-56394876 None:intergenic 25.0%
! GAAGAAAAGGAAAATGAAAA+CGG + chr8_1:56395052-56395071 None:intergenic 25.0%
!!! AATTATGATTTGTTTCTGTC+CGG - chr8_1:56395099-56395118 Msa1202750:three_prime_UTR 25.0%
! TCCTCAATTTGTATTTGTTT+AGG - chr8_1:56395164-56395183 Msa1202750:three_prime_UTR 25.0%
! ACCTAAACAAATACAAATTG+AGG + chr8_1:56395168-56395187 None:intergenic 25.0%
! TCTATTGAATAAAACATCTG+TGG + chr8_1:56396175-56396194 None:intergenic 25.0%
! AAAGTTCTTTGAGTCTAATT+GGG + chr8_1:56396832-56396851 None:intergenic 25.0%
! CTACATTTCATAATAAATGG+TGG + chr8_1:56397424-56397443 None:intergenic 25.0%
!! AAGATATATGGTTTGTCATT+TGG + chr8_1:56397518-56397537 None:intergenic 25.0%
! GTAATAATACTAGTGAAGTA+TGG - chr8_1:56397583-56397602 Msa1202750:CDS 25.0%
! ATGATATGTAGATAGGTAAA+TGG + chr8_1:56397813-56397832 None:intergenic 25.0%
!!! CACAGATTTTTAATTCTCTA+GGG - chr8_1:56397877-56397896 Msa1202750:CDS 25.0%
! GACATATATTTAAGCAAACA+AGG + chr8_1:56397964-56397983 None:intergenic 25.0%
! ATGACATAAATGAGAAAAAG+TGG + chr8_1:56398013-56398032 None:intergenic 25.0%
! TTGAGTATGTGCATAAATAT+TGG - chr8_1:56398339-56398358 Msa1202750:intron 25.0%
! TGAGTATGTGCATAAATATT+GGG - chr8_1:56398340-56398359 Msa1202750:intron 25.0%
!! GCAAAATAATTTGTACTGAA+CGG + chr8_1:56398366-56398385 None:intergenic 25.0%
! TAGATGGTTGATTAGTAAAA+TGG - chr8_1:56398401-56398420 Msa1202750:intron 25.0%
! TCGGTAAGAAAAAAACTATA+TGG + chr8_1:56398453-56398472 None:intergenic 25.0%
GTTGAAGATTTATATTCCAC+AGG - chr8_1:56394687-56394706 Msa1202750:three_prime_UTR 30.0%
TATTTGTTTGTGAGCGAAAA+TGG + chr8_1:56394721-56394740 None:intergenic 30.0%
AAAGAAGAAGAAGAAGAAGA+AGG + chr8_1:56394757-56394776 None:intergenic 30.0%
CAACAAAACAGAAGAAGAAA+AGG + chr8_1:56395065-56395084 None:intergenic 30.0%
! CTTTTCTTCTTCTGTTTTGT+TGG - chr8_1:56395063-56395082 Msa1202750:three_prime_UTR 30.0%
AATGCTATAGCAGTAAATGT+CGG + chr8_1:56395385-56395404 None:intergenic 30.0%
TTACTGCTATAGCATTTGAT+AGG - chr8_1:56395389-56395408 Msa1202750:intron 30.0%
ATTTGATAGGTTAATTGAGC+CGG - chr8_1:56395402-56395421 Msa1202750:intron 30.0%
TATGAGTTTCACAAGTTACA+CGG - chr8_1:56396011-56396030 Msa1202750:intron 30.0%
!!! GTCGTTTTTCTCATATTTTC+TGG - chr8_1:56396251-56396270 Msa1202750:intron 30.0%
ATGATAAAGCGAAGGAAAAA+AGG - chr8_1:56396400-56396419 Msa1202750:intron 30.0%
! AAAAGGATATCTGGATGTTT+TGG - chr8_1:56396417-56396436 Msa1202750:intron 30.0%
! AAAGGATATCTGGATGTTTT+GGG - chr8_1:56396418-56396437 Msa1202750:intron 30.0%
AATAAGGTTGAGTCTATTGA+TGG - chr8_1:56396560-56396579 Msa1202750:CDS 30.0%
CAAAGTTCTTTGAGTCTAAT+TGG + chr8_1:56396833-56396852 None:intergenic 30.0%
TGTTCAAGAGTTATAAAGAC+CGG - chr8_1:56397198-56397217 Msa1202750:intron 30.0%
ATCAGGATTATGGTAATTGA+TGG - chr8_1:56397160-56397179 Msa1202750:intron 30.0%
! GATTATGGTAATTGATGGTA+TGG - chr8_1:56397238-56397257 Msa1202750:intron 30.0%
GATAAACGGTTGAAGATATA+TGG + chr8_1:56397530-56397549 None:intergenic 30.0%
! AGTTTTTGTGGATTTGAACT+TGG - chr8_1:56397561-56397580 Msa1202750:CDS 30.0%
!!! TTCCTTCTGATCTTTGTTTT+AGG - chr8_1:56397734-56397753 Msa1202750:CDS 30.0%
AACCTAAAACAAAGATCAGA+AGG + chr8_1:56397739-56397758 None:intergenic 30.0%
TCATGTAACAACACATTTGT+AGG - chr8_1:56397758-56397777 Msa1202750:CDS 30.0%
ACCTATCTACATATCATGTT+AGG - chr8_1:56397816-56397835 Msa1202750:CDS 30.0%
CCTAGAGAATTAAAAATCTG+TGG + chr8_1:56397879-56397898 None:intergenic 30.0%
!! CCACAGATTTTTAATTCTCT+AGG - chr8_1:56397876-56397895 Msa1202750:CDS 30.0%
AAGCAGGCTAAAAATAAACT+AGG + chr8_1:56397986-56398005 None:intergenic 30.0%
! TTTTCTGTCATGTTTAGAGA+CGG - chr8_1:56398032-56398051 Msa1202750:intron 30.0%
ATGTTGATCCTTTACTTGAT+GGG + chr8_1:56398161-56398180 None:intergenic 30.0%
! AAGTTTTACATGCTACTATG+TGG - chr8_1:56398277-56398296 Msa1202750:intron 30.0%
GGTTGATTAGTAAAATGGTA+TGG - chr8_1:56398406-56398425 Msa1202750:intron 30.0%
TGGTATTTATCTTATCAACG+TGG + chr8_1:56398433-56398452 None:intergenic 30.0%
!! TAGAATTCTGGTTTCTAATC+TGG - chr8_1:56398632-56398651 Msa1202750:five_prime_UTR 30.0%
GTTGAAGATTTATATTCCAC+AGG - chr8_1:56394687-56394706 Msa1202750:three_prime_UTR 30.0%
TATTTGTTTGTGAGCGAAAA+TGG + chr8_1:56394721-56394740 None:intergenic 30.0%
AAAGAAGAAGAAGAAGAAGA+AGG + chr8_1:56394757-56394776 None:intergenic 30.0%
CAACAAAACAGAAGAAGAAA+AGG + chr8_1:56395065-56395084 None:intergenic 30.0%
! CTTTTCTTCTTCTGTTTTGT+TGG - chr8_1:56395063-56395082 Msa1202750:three_prime_UTR 30.0%
AATGCTATAGCAGTAAATGT+CGG + chr8_1:56395385-56395404 None:intergenic 30.0%
TTACTGCTATAGCATTTGAT+AGG - chr8_1:56395389-56395408 Msa1202750:intron 30.0%
ATTTGATAGGTTAATTGAGC+CGG - chr8_1:56395402-56395421 Msa1202750:intron 30.0%
TATGAGTTTCACAAGTTACA+CGG - chr8_1:56396011-56396030 Msa1202750:intron 30.0%
!!! GTCGTTTTTCTCATATTTTC+TGG - chr8_1:56396251-56396270 Msa1202750:intron 30.0%
ATGATAAAGCGAAGGAAAAA+AGG - chr8_1:56396400-56396419 Msa1202750:intron 30.0%
! AAAAGGATATCTGGATGTTT+TGG - chr8_1:56396417-56396436 Msa1202750:intron 30.0%
! AAAGGATATCTGGATGTTTT+GGG - chr8_1:56396418-56396437 Msa1202750:intron 30.0%
AATAAGGTTGAGTCTATTGA+TGG - chr8_1:56396560-56396579 Msa1202750:CDS 30.0%
CAAAGTTCTTTGAGTCTAAT+TGG + chr8_1:56396833-56396852 None:intergenic 30.0%
TGTTCAAGAGTTATAAAGAC+CGG - chr8_1:56397198-56397217 Msa1202750:intron 30.0%
ATCAGGATTATGGTAATTGA+TGG - chr8_1:56397160-56397179 Msa1202750:intron 30.0%
! GATTATGGTAATTGATGGTA+TGG - chr8_1:56397238-56397257 Msa1202750:intron 30.0%
GATAAACGGTTGAAGATATA+TGG + chr8_1:56397530-56397549 None:intergenic 30.0%
! AGTTTTTGTGGATTTGAACT+TGG - chr8_1:56397561-56397580 Msa1202750:CDS 30.0%
!!! TTCCTTCTGATCTTTGTTTT+AGG - chr8_1:56397734-56397753 Msa1202750:CDS 30.0%
AACCTAAAACAAAGATCAGA+AGG + chr8_1:56397739-56397758 None:intergenic 30.0%
TCATGTAACAACACATTTGT+AGG - chr8_1:56397758-56397777 Msa1202750:CDS 30.0%
ACCTATCTACATATCATGTT+AGG - chr8_1:56397816-56397835 Msa1202750:CDS 30.0%
CCTAGAGAATTAAAAATCTG+TGG + chr8_1:56397879-56397898 None:intergenic 30.0%
!! CCACAGATTTTTAATTCTCT+AGG - chr8_1:56397876-56397895 Msa1202750:CDS 30.0%
AAGCAGGCTAAAAATAAACT+AGG + chr8_1:56397986-56398005 None:intergenic 30.0%
! TTTTCTGTCATGTTTAGAGA+CGG - chr8_1:56398032-56398051 Msa1202750:intron 30.0%
ATGTTGATCCTTTACTTGAT+GGG + chr8_1:56398161-56398180 None:intergenic 30.0%
! AAGTTTTACATGCTACTATG+TGG - chr8_1:56398277-56398296 Msa1202750:intron 30.0%
GGTTGATTAGTAAAATGGTA+TGG - chr8_1:56398406-56398425 Msa1202750:intron 30.0%
TGGTATTTATCTTATCAACG+TGG + chr8_1:56398433-56398452 None:intergenic 30.0%
!! TAGAATTCTGGTTTCTAATC+TGG - chr8_1:56398632-56398651 Msa1202750:five_prime_UTR 30.0%
AAAGAGAGAGATAGTTGTTG+TGG - chr8_1:56394655-56394674 Msa1202750:three_prime_UTR 35.0%
AGATTTATATTCCACAGGTG+TGG - chr8_1:56394692-56394711 Msa1202750:three_prime_UTR 35.0%
GATTTATATTCCACAGGTGT+GGG - chr8_1:56394693-56394712 Msa1202750:three_prime_UTR 35.0%
TTTGATAGGTTAATTGAGCC+GGG - chr8_1:56395403-56395422 Msa1202750:intron 35.0%
!! TGATTGATGATGTAAGGAGA+AGG + chr8_1:56395634-56395653 None:intergenic 35.0%
!! CGTTTGTGATTGATGATGTA+AGG + chr8_1:56395640-56395659 None:intergenic 35.0%
TGTGAAGAAGGAAATGTTAG+TGG - chr8_1:56395721-56395740 Msa1202750:intron 35.0%
!! TGATACTGTGGTTTCTAGTT+CGG - chr8_1:56395753-56395772 Msa1202750:intron 35.0%
ACCAAAGTTAGTATCAGCAA+TGG - chr8_1:56395847-56395866 Msa1202750:intron 35.0%
ACCATTGCTGATACTAACTT+TGG + chr8_1:56395851-56395870 None:intergenic 35.0%
AAAGTTAGTATCAGCAATGG+TGG - chr8_1:56395850-56395869 Msa1202750:intron 35.0%
GAAAGTAGTAGTGATCCTAA+TGG - chr8_1:56395901-56395920 Msa1202750:intron 35.0%
! TTTTCCACATGCTTTCCATT+AGG + chr8_1:56395919-56395938 None:intergenic 35.0%
ATAGAACTCATAGTATCACG+TGG + chr8_1:56395994-56396013 None:intergenic 35.0%
TTGGGAAGGTAAAATAAACC+AGG - chr8_1:56396101-56396120 Msa1202750:intron 35.0%
GAACTAAAACAGAGTTAACC+TGG + chr8_1:56396122-56396141 None:intergenic 35.0%
TTGTAATTCGGCATGATGTT+AGG - chr8_1:56396197-56396216 Msa1202750:intron 35.0%
ATCTCATAGATTCGCTTACT+TGG - chr8_1:56396449-56396468 Msa1202750:intron 35.0%
ATGCTGAATTGCGTGAAATA+AGG - chr8_1:56396544-56396563 Msa1202750:CDS 35.0%
! TTAAAAGCATGCAAAGTCAG+TGG - chr8_1:56396616-56396635 Msa1202750:CDS 35.0%
! TAAAAGCATGCAAAGTCAGT+GGG - chr8_1:56396617-56396636 Msa1202750:CDS 35.0%
!! CTTTGAGATTTCTCGACTAT+TGG - chr8_1:56396848-56396867 Msa1202750:CDS 35.0%
TCATGGTCTCATAGTAATGA+AGG + chr8_1:56396878-56396897 None:intergenic 35.0%
TGTTCAAGAGTTGTAAACAC+CGG - chr8_1:56397125-56397144 Msa1202750:intron 35.0%
GTTCAAGAGTTATAAAGACC+GGG - chr8_1:56397199-56397218 Msa1202750:intron 35.0%
GATCAGAAGGAAAAGAGATA+CGG + chr8_1:56397726-56397745 None:intergenic 35.0%
GCCTAACATGATATGTAGAT+AGG + chr8_1:56397820-56397839 None:intergenic 35.0%
! AGCGATATTCTGTTTTCTGT+TGG - chr8_1:56397936-56397955 Msa1202750:CDS 35.0%
ATTACTACTGCCATTGTACT+TGG - chr8_1:56398108-56398127 Msa1202750:intron 35.0%
GATGTTGATCCTTTACTTGA+TGG + chr8_1:56398162-56398181 None:intergenic 35.0%
!! AGTGTTGGTGGAATATTAGT+TGG + chr8_1:56398223-56398242 None:intergenic 35.0%
TAACTAGGCAAAGTTAGTGT+TGG + chr8_1:56398238-56398257 None:intergenic 35.0%
ACACTAACTTTGCCTAGTTA+TGG - chr8_1:56398238-56398257 Msa1202750:intron 35.0%
TAACTTTGCCTAGTTATGGT+AGG - chr8_1:56398242-56398261 Msa1202750:intron 35.0%
TGATGAATTAGAATGCTCGA+AGG + chr8_1:56398545-56398564 None:intergenic 35.0%
TTAGAAACCAGAATTCTACC+AGG + chr8_1:56398630-56398649 None:intergenic 35.0%
TGCTTGTGTCATATTTCAGT+TGG - chr8_1:56398657-56398676 Msa1202750:five_prime_UTR 35.0%
GAAGTATAACCATGTTTGTC+AGG - chr8_1:56398717-56398736 Msa1202750:five_prime_UTR 35.0%
AAAGAGAGAGATAGTTGTTG+TGG - chr8_1:56394655-56394674 Msa1202750:three_prime_UTR 35.0%
AGATTTATATTCCACAGGTG+TGG - chr8_1:56394692-56394711 Msa1202750:three_prime_UTR 35.0%
GATTTATATTCCACAGGTGT+GGG - chr8_1:56394693-56394712 Msa1202750:three_prime_UTR 35.0%
TTTGATAGGTTAATTGAGCC+GGG - chr8_1:56395403-56395422 Msa1202750:intron 35.0%
!! TGATTGATGATGTAAGGAGA+AGG + chr8_1:56395634-56395653 None:intergenic 35.0%
!! CGTTTGTGATTGATGATGTA+AGG + chr8_1:56395640-56395659 None:intergenic 35.0%
TGTGAAGAAGGAAATGTTAG+TGG - chr8_1:56395721-56395740 Msa1202750:intron 35.0%
!! TGATACTGTGGTTTCTAGTT+CGG - chr8_1:56395753-56395772 Msa1202750:intron 35.0%
ACCAAAGTTAGTATCAGCAA+TGG - chr8_1:56395847-56395866 Msa1202750:intron 35.0%
ACCATTGCTGATACTAACTT+TGG + chr8_1:56395851-56395870 None:intergenic 35.0%
AAAGTTAGTATCAGCAATGG+TGG - chr8_1:56395850-56395869 Msa1202750:intron 35.0%
GAAAGTAGTAGTGATCCTAA+TGG - chr8_1:56395901-56395920 Msa1202750:intron 35.0%
! TTTTCCACATGCTTTCCATT+AGG + chr8_1:56395919-56395938 None:intergenic 35.0%
ATAGAACTCATAGTATCACG+TGG + chr8_1:56395994-56396013 None:intergenic 35.0%
TTGGGAAGGTAAAATAAACC+AGG - chr8_1:56396101-56396120 Msa1202750:intron 35.0%
GAACTAAAACAGAGTTAACC+TGG + chr8_1:56396122-56396141 None:intergenic 35.0%
TTGTAATTCGGCATGATGTT+AGG - chr8_1:56396197-56396216 Msa1202750:intron 35.0%
ATCTCATAGATTCGCTTACT+TGG - chr8_1:56396449-56396468 Msa1202750:intron 35.0%
ATGCTGAATTGCGTGAAATA+AGG - chr8_1:56396544-56396563 Msa1202750:CDS 35.0%
! TTAAAAGCATGCAAAGTCAG+TGG - chr8_1:56396616-56396635 Msa1202750:CDS 35.0%
! TAAAAGCATGCAAAGTCAGT+GGG - chr8_1:56396617-56396636 Msa1202750:CDS 35.0%
!! CTTTGAGATTTCTCGACTAT+TGG - chr8_1:56396848-56396867 Msa1202750:CDS 35.0%
TCATGGTCTCATAGTAATGA+AGG + chr8_1:56396878-56396897 None:intergenic 35.0%
TGTTCAAGAGTTGTAAACAC+CGG - chr8_1:56397125-56397144 Msa1202750:intron 35.0%
GTTCAAGAGTTATAAAGACC+GGG - chr8_1:56397199-56397218 Msa1202750:intron 35.0%
GATCAGAAGGAAAAGAGATA+CGG + chr8_1:56397726-56397745 None:intergenic 35.0%
GCCTAACATGATATGTAGAT+AGG + chr8_1:56397820-56397839 None:intergenic 35.0%
! AGCGATATTCTGTTTTCTGT+TGG - chr8_1:56397936-56397955 Msa1202750:CDS 35.0%
ATTACTACTGCCATTGTACT+TGG - chr8_1:56398108-56398127 Msa1202750:intron 35.0%
GATGTTGATCCTTTACTTGA+TGG + chr8_1:56398162-56398181 None:intergenic 35.0%
!! AGTGTTGGTGGAATATTAGT+TGG + chr8_1:56398223-56398242 None:intergenic 35.0%
TAACTAGGCAAAGTTAGTGT+TGG + chr8_1:56398238-56398257 None:intergenic 35.0%
ACACTAACTTTGCCTAGTTA+TGG - chr8_1:56398238-56398257 Msa1202750:intron 35.0%
TAACTTTGCCTAGTTATGGT+AGG - chr8_1:56398242-56398261 Msa1202750:intron 35.0%
TGATGAATTAGAATGCTCGA+AGG + chr8_1:56398545-56398564 None:intergenic 35.0%
TTAGAAACCAGAATTCTACC+AGG + chr8_1:56398630-56398649 None:intergenic 35.0%
TGCTTGTGTCATATTTCAGT+TGG - chr8_1:56398657-56398676 Msa1202750:five_prime_UTR 35.0%
GAAGTATAACCATGTTTGTC+AGG - chr8_1:56398717-56398736 Msa1202750:five_prime_UTR 35.0%
TAAAAACCTTGTGGTTGCGT+GGG + chr8_1:56394811-56394830 None:intergenic 40.0%
ATAAAAACCTTGTGGTTGCG+TGG + chr8_1:56394812-56394831 None:intergenic 40.0%
GAACCTAAGATGAATTCGTG+CGG + chr8_1:56394937-56394956 None:intergenic 40.0%
!! TTGTTTCTGTCCGGTGTATT+CGG - chr8_1:56395108-56395127 Msa1202750:three_prime_UTR 40.0%
ATAACCCTAACCGAATACAC+CGG + chr8_1:56395121-56395140 None:intergenic 40.0%
AGCTTCTTCGAATTAGGAAC+AGG + chr8_1:56395469-56395488 None:intergenic 40.0%
! TTCTTTCTAGCAGTTCCAGT+TGG + chr8_1:56395511-56395530 None:intergenic 40.0%
TTTAATTGAGGTCGAGTAGG+CGG + chr8_1:56395535-56395554 None:intergenic 40.0%
! TAGAGTGACGGCTTTAATTG+AGG + chr8_1:56395547-56395566 None:intergenic 40.0%
GAATCTTGAAGAGGAGAATC+TGG + chr8_1:56395595-56395614 None:intergenic 40.0%
GAGGAAGTTGAATCTTGAAG+AGG + chr8_1:56395604-56395623 None:intergenic 40.0%
!! TTGATGATGTAAGGAGAAGG+CGG + chr8_1:56395631-56395650 None:intergenic 40.0%
TTATCTTGCTCCTCCTTAAG+AGG + chr8_1:56395814-56395833 None:intergenic 40.0%
CTTAAGGAGGAGCAAGATAA+TGG - chr8_1:56395814-56395833 Msa1202750:intron 40.0%
! TGATCCTAATGGAAAGCATG+TGG - chr8_1:56395912-56395931 Msa1202750:intron 40.0%
! AAAGCTAGTGCCGTTGAATT+TGG - chr8_1:56395936-56395955 Msa1202750:intron 40.0%
CCATCTCTCTCCAAATTCAA+CGG + chr8_1:56395949-56395968 None:intergenic 40.0%
AGTTTCACAAGTTACACGGA+TGG - chr8_1:56396015-56396034 Msa1202750:intron 40.0%
!!! TGCAGAGTTTTTTGACGCTT+GGG - chr8_1:56396083-56396102 Msa1202750:intron 40.0%
TGCAATTGCACATGTGCATT+TGG - chr8_1:56396144-56396163 Msa1202750:intron 40.0%
GCGAAGGAAAAAAGGATATC+TGG - chr8_1:56396408-56396427 Msa1202750:intron 40.0%
AGAGAAGGGTTATCTTCTGT+TGG - chr8_1:56396648-56396667 Msa1202750:CDS 40.0%
! GATCTTAGTGCTATTGCAGA+AGG - chr8_1:56396687-56396706 Msa1202750:CDS 40.0%
! TTAGTGCTATTGCAGAAGGT+GGG - chr8_1:56396691-56396710 Msa1202750:CDS 40.0%
TGCTGACATAGATCATCTAC+AGG + chr8_1:56396732-56396751 None:intergenic 40.0%
TGTAGATGATCTATGTCAGC+AGG - chr8_1:56396731-56396750 Msa1202750:intron 40.0%
AGGTTCATATCAAACGCCAT+TGG - chr8_1:56396765-56396784 Msa1202750:CDS 40.0%
ATATCAAACGCCATTGGAAG+AGG - chr8_1:56396771-56396790 Msa1202750:CDS 40.0%
CTGAGACATCTCTCTATTCA+TGG + chr8_1:56396895-56396914 None:intergenic 40.0%
TGAATAGAGAGATGTCTCAG+AGG - chr8_1:56396895-56396914 Msa1202750:CDS 40.0%
CATCTATGTATCTCCTAGCT+AGG - chr8_1:56397028-56397047 Msa1202750:intron 40.0%
TATGTATCTCCTAGCTAGGA+CGG - chr8_1:56397032-56397051 Msa1202750:intron 40.0%
TAAATAAACCCGTCCTAGCT+AGG + chr8_1:56397044-56397063 None:intergenic 40.0%
GTTCAAGAGTTGTAAACACC+GGG - chr8_1:56397126-56397145 Msa1202750:intron 40.0%
GGCACTTAGTATCAGGATTA+TGG - chr8_1:56397223-56397242 Msa1202750:intron 40.0%
! GTTGGGGGTATAGTTTATAG+TGG + chr8_1:56397365-56397384 None:intergenic 40.0%
TCTTCGAACAATTCCCTCTT+TGG + chr8_1:56397392-56397411 None:intergenic 40.0%
TGGCATGTACTATAATCGCA+AGG - chr8_1:56397603-56397622 Msa1202750:CDS 40.0%
! TAGGAGGCAGAAATGGATTT+GGG - chr8_1:56398080-56398099 Msa1202750:intron 40.0%
TGCTGTAGTACCAAGTACAA+TGG + chr8_1:56398121-56398140 None:intergenic 40.0%
TTGGTACTACAGCAATAGCA+TGG - chr8_1:56398127-56398146 Msa1202750:intron 40.0%
TCGTATCTCCCATCAAGTAA+AGG - chr8_1:56398150-56398169 Msa1202750:intron 40.0%
CTTATTCTGCTCGCAAGAAT+CGG + chr8_1:56398472-56398491 None:intergenic 40.0%
ACACGCTCTGTGAAATGTAT+CGG + chr8_1:56398504-56398523 None:intergenic 40.0%
GTGTCATATTTCAGTTGGCT+CGG - chr8_1:56398662-56398681 Msa1202750:five_prime_UTR 40.0%
ATAACCATGTTTGTCAGGCA+TGG - chr8_1:56398722-56398741 Msa1202750:five_prime_UTR 40.0%
ATAACCATGCCTGACAAACA+TGG + chr8_1:56398729-56398748 None:intergenic 40.0%
ATGTTTGTCAGGCATGGTTA+TGG - chr8_1:56398728-56398747 Msa1202750:five_prime_UTR 40.0%
TAAAAACCTTGTGGTTGCGT+GGG + chr8_1:56394811-56394830 None:intergenic 40.0%
ATAAAAACCTTGTGGTTGCG+TGG + chr8_1:56394812-56394831 None:intergenic 40.0%
GAACCTAAGATGAATTCGTG+CGG + chr8_1:56394937-56394956 None:intergenic 40.0%
!! TTGTTTCTGTCCGGTGTATT+CGG - chr8_1:56395108-56395127 Msa1202750:three_prime_UTR 40.0%
ATAACCCTAACCGAATACAC+CGG + chr8_1:56395121-56395140 None:intergenic 40.0%
AGCTTCTTCGAATTAGGAAC+AGG + chr8_1:56395469-56395488 None:intergenic 40.0%
! TTCTTTCTAGCAGTTCCAGT+TGG + chr8_1:56395511-56395530 None:intergenic 40.0%
TTTAATTGAGGTCGAGTAGG+CGG + chr8_1:56395535-56395554 None:intergenic 40.0%
! TAGAGTGACGGCTTTAATTG+AGG + chr8_1:56395547-56395566 None:intergenic 40.0%
GAATCTTGAAGAGGAGAATC+TGG + chr8_1:56395595-56395614 None:intergenic 40.0%
GAGGAAGTTGAATCTTGAAG+AGG + chr8_1:56395604-56395623 None:intergenic 40.0%
!! TTGATGATGTAAGGAGAAGG+CGG + chr8_1:56395631-56395650 None:intergenic 40.0%
TTATCTTGCTCCTCCTTAAG+AGG + chr8_1:56395814-56395833 None:intergenic 40.0%
CTTAAGGAGGAGCAAGATAA+TGG - chr8_1:56395814-56395833 Msa1202750:intron 40.0%
! TGATCCTAATGGAAAGCATG+TGG - chr8_1:56395912-56395931 Msa1202750:intron 40.0%
! AAAGCTAGTGCCGTTGAATT+TGG - chr8_1:56395936-56395955 Msa1202750:intron 40.0%
CCATCTCTCTCCAAATTCAA+CGG + chr8_1:56395949-56395968 None:intergenic 40.0%
AGTTTCACAAGTTACACGGA+TGG - chr8_1:56396015-56396034 Msa1202750:intron 40.0%
!!! TGCAGAGTTTTTTGACGCTT+GGG - chr8_1:56396083-56396102 Msa1202750:intron 40.0%
TGCAATTGCACATGTGCATT+TGG - chr8_1:56396144-56396163 Msa1202750:intron 40.0%
GCGAAGGAAAAAAGGATATC+TGG - chr8_1:56396408-56396427 Msa1202750:intron 40.0%
AGAGAAGGGTTATCTTCTGT+TGG - chr8_1:56396648-56396667 Msa1202750:CDS 40.0%
! GATCTTAGTGCTATTGCAGA+AGG - chr8_1:56396687-56396706 Msa1202750:CDS 40.0%
! TTAGTGCTATTGCAGAAGGT+GGG - chr8_1:56396691-56396710 Msa1202750:CDS 40.0%
TGCTGACATAGATCATCTAC+AGG + chr8_1:56396732-56396751 None:intergenic 40.0%
TGTAGATGATCTATGTCAGC+AGG - chr8_1:56396731-56396750 Msa1202750:intron 40.0%
AGGTTCATATCAAACGCCAT+TGG - chr8_1:56396765-56396784 Msa1202750:CDS 40.0%
ATATCAAACGCCATTGGAAG+AGG - chr8_1:56396771-56396790 Msa1202750:CDS 40.0%
CTGAGACATCTCTCTATTCA+TGG + chr8_1:56396895-56396914 None:intergenic 40.0%
TGAATAGAGAGATGTCTCAG+AGG - chr8_1:56396895-56396914 Msa1202750:CDS 40.0%
CATCTATGTATCTCCTAGCT+AGG - chr8_1:56397028-56397047 Msa1202750:intron 40.0%
TATGTATCTCCTAGCTAGGA+CGG - chr8_1:56397032-56397051 Msa1202750:intron 40.0%
TAAATAAACCCGTCCTAGCT+AGG + chr8_1:56397044-56397063 None:intergenic 40.0%
GTTCAAGAGTTGTAAACACC+GGG - chr8_1:56397126-56397145 Msa1202750:intron 40.0%
GGCACTTAGTATCAGGATTA+TGG - chr8_1:56397223-56397242 Msa1202750:intron 40.0%
! GTTGGGGGTATAGTTTATAG+TGG + chr8_1:56397365-56397384 None:intergenic 40.0%
TCTTCGAACAATTCCCTCTT+TGG + chr8_1:56397392-56397411 None:intergenic 40.0%
TGGCATGTACTATAATCGCA+AGG - chr8_1:56397603-56397622 Msa1202750:CDS 40.0%
! TAGGAGGCAGAAATGGATTT+GGG - chr8_1:56398080-56398099 Msa1202750:intron 40.0%
TGCTGTAGTACCAAGTACAA+TGG + chr8_1:56398121-56398140 None:intergenic 40.0%
TTGGTACTACAGCAATAGCA+TGG - chr8_1:56398127-56398146 Msa1202750:intron 40.0%
TCGTATCTCCCATCAAGTAA+AGG - chr8_1:56398150-56398169 Msa1202750:intron 40.0%
CTTATTCTGCTCGCAAGAAT+CGG + chr8_1:56398472-56398491 None:intergenic 40.0%
ACACGCTCTGTGAAATGTAT+CGG + chr8_1:56398504-56398523 None:intergenic 40.0%
GTGTCATATTTCAGTTGGCT+CGG - chr8_1:56398662-56398681 Msa1202750:five_prime_UTR 40.0%
ATAACCATGTTTGTCAGGCA+TGG - chr8_1:56398722-56398741 Msa1202750:five_prime_UTR 40.0%
ATAACCATGCCTGACAAACA+TGG + chr8_1:56398729-56398748 None:intergenic 40.0%
ATGTTTGTCAGGCATGGTTA+TGG - chr8_1:56398728-56398747 Msa1202750:five_prime_UTR 40.0%
AGAAGGAGTGGAAAAGGACT+AGG + chr8_1:56394783-56394802 None:intergenic 45.0%
GGAAGAAGAAGGAGTGGAAA+AGG + chr8_1:56394789-56394808 None:intergenic 45.0%
AAAAACCTTGTGGTTGCGTG+GGG + chr8_1:56394810-56394829 None:intergenic 45.0%
TTGCCGCACGAATTCATCTT+AGG - chr8_1:56394931-56394950 Msa1202750:three_prime_UTR 45.0%
CTCTCGAGCTTCTTCGAATT+AGG + chr8_1:56395475-56395494 None:intergenic 45.0%
CTAATTCGAAGAAGCTCGAG+AGG - chr8_1:56395473-56395492 Msa1202750:intron 45.0%
! GGCTTTAATTGAGGTCGAGT+AGG + chr8_1:56395538-56395557 None:intergenic 45.0%
TGAAGAGGAGAATCTGGAAG+CGG + chr8_1:56395589-56395608 None:intergenic 45.0%
ATCATCAATCACAAACGCCG+TGG - chr8_1:56395643-56395662 Msa1202750:intron 45.0%
TCATCAATCACAAACGCCGT+GGG - chr8_1:56395644-56395663 Msa1202750:intron 45.0%
AAGCAGGAGGTTTGTGAAGA+AGG - chr8_1:56395709-56395728 Msa1202750:intron 45.0%
TGGTAAGAGCTGTGATACTG+TGG - chr8_1:56395741-56395760 Msa1202750:intron 45.0%
CCGTTGAATTTGGAGAGAGA+TGG - chr8_1:56395946-56395965 Msa1202750:intron 45.0%
ACGGATGGAGAGGATAATAC+CGG - chr8_1:56396030-56396049 Msa1202750:intron 45.0%
!!! CTGCAGAGTTTTTTGACGCT+TGG - chr8_1:56396082-56396101 Msa1202750:intron 45.0%
!!! GAGTTTTTTGACGCTTGGGA+AGG - chr8_1:56396087-56396106 Msa1202750:intron 45.0%
CCATCAGAAGAGAGTTCTAC+AGG + chr8_1:56396489-56396508 None:intergenic 45.0%
CCTGTAGAACTCTCTTCTGA+TGG - chr8_1:56396486-56396505 Msa1202750:intron 45.0%
GTAGAACTCTCTTCTGATGG+TGG - chr8_1:56396489-56396508 Msa1202750:intron 45.0%
AGTGGGAGAGAATCAGAGAA+GGG - chr8_1:56396634-56396653 Msa1202750:CDS 45.0%
GCAATAGCACTAAGATCTGC+AGG + chr8_1:56396684-56396703 None:intergenic 45.0%
! CTTAGTGCTATTGCAGAAGG+TGG - chr8_1:56396690-56396709 Msa1202750:CDS 45.0%
GTCAGCAGGTTTACATTGCT+AGG - chr8_1:56396745-56396764 Msa1202750:CDS 45.0%
CATTGGAAGAGGAACTGCTA+GGG - chr8_1:56396782-56396801 Msa1202750:CDS 45.0%
ATGTATCTCCTAGCTAGGAC+GGG - chr8_1:56397033-56397052 Msa1202750:intron 45.0%
! GGCACTGAGTATCAGGATTA+TGG - chr8_1:56397150-56397169 Msa1202750:intron 45.0%
CAAGAGTTATAAAGACCGGG+TGG - chr8_1:56397202-56397221 Msa1202750:intron 45.0%
ATTCCCTCTTTGGTGGAGTT+GGG + chr8_1:56397382-56397401 None:intergenic 45.0%
AATTCCCTCTTTGGTGGAGT+TGG + chr8_1:56397383-56397402 None:intergenic 45.0%
TCGAACAATTCCCTCTTTGG+TGG + chr8_1:56397389-56397408 None:intergenic 45.0%
GAGAAAAAGTGGAGCAAAGC+AGG + chr8_1:56398002-56398021 None:intergenic 45.0%
TGTCATGTTTAGAGACGGCA+AGG - chr8_1:56398037-56398056 Msa1202750:intron 45.0%
GTGAGAGACAAAGAAGGTCT+AGG - chr8_1:56398061-56398080 Msa1202750:intron 45.0%
AGAGACAAAGAAGGTCTAGG+AGG - chr8_1:56398064-56398083 Msa1202750:intron 45.0%
! CTAGGAGGCAGAAATGGATT+TGG - chr8_1:56398079-56398098 Msa1202750:intron 45.0%
! AGGAGGCAGAAATGGATTTG+GGG - chr8_1:56398081-56398100 Msa1202750:intron 45.0%
AACATCTGCAGACCATGATG+AGG - chr8_1:56398176-56398195 Msa1202750:intron 45.0%
TGCAGACCATGATGAGGTTT+CGG - chr8_1:56398182-56398201 Msa1202750:intron 45.0%
! CTAGGCAAAGTTAGTGTTGG+TGG + chr8_1:56398235-56398254 None:intergenic 45.0%
TTGCCTAGTTATGGTAGGAG+AGG - chr8_1:56398247-56398266 Msa1202750:intron 45.0%
TCTCCTCTCCTACCATAACT+AGG + chr8_1:56398253-56398272 None:intergenic 45.0%
TCAACCATCTAGACTTGCAG+TGG + chr8_1:56398392-56398411 None:intergenic 45.0%
TGCACAACCTGGTAGAATTC+TGG - chr8_1:56398620-56398639 Msa1202750:five_prime_UTR 45.0%
AGAAGGAGTGGAAAAGGACT+AGG + chr8_1:56394783-56394802 None:intergenic 45.0%
GGAAGAAGAAGGAGTGGAAA+AGG + chr8_1:56394789-56394808 None:intergenic 45.0%
AAAAACCTTGTGGTTGCGTG+GGG + chr8_1:56394810-56394829 None:intergenic 45.0%
TTGCCGCACGAATTCATCTT+AGG - chr8_1:56394931-56394950 Msa1202750:three_prime_UTR 45.0%
CTCTCGAGCTTCTTCGAATT+AGG + chr8_1:56395475-56395494 None:intergenic 45.0%
CTAATTCGAAGAAGCTCGAG+AGG - chr8_1:56395473-56395492 Msa1202750:intron 45.0%
! GGCTTTAATTGAGGTCGAGT+AGG + chr8_1:56395538-56395557 None:intergenic 45.0%
TGAAGAGGAGAATCTGGAAG+CGG + chr8_1:56395589-56395608 None:intergenic 45.0%
ATCATCAATCACAAACGCCG+TGG - chr8_1:56395643-56395662 Msa1202750:intron 45.0%
TCATCAATCACAAACGCCGT+GGG - chr8_1:56395644-56395663 Msa1202750:intron 45.0%
AAGCAGGAGGTTTGTGAAGA+AGG - chr8_1:56395709-56395728 Msa1202750:intron 45.0%
TGGTAAGAGCTGTGATACTG+TGG - chr8_1:56395741-56395760 Msa1202750:intron 45.0%
CCGTTGAATTTGGAGAGAGA+TGG - chr8_1:56395946-56395965 Msa1202750:intron 45.0%
ACGGATGGAGAGGATAATAC+CGG - chr8_1:56396030-56396049 Msa1202750:intron 45.0%
!!! CTGCAGAGTTTTTTGACGCT+TGG - chr8_1:56396082-56396101 Msa1202750:intron 45.0%
!!! GAGTTTTTTGACGCTTGGGA+AGG - chr8_1:56396087-56396106 Msa1202750:intron 45.0%
CCATCAGAAGAGAGTTCTAC+AGG + chr8_1:56396489-56396508 None:intergenic 45.0%
CCTGTAGAACTCTCTTCTGA+TGG - chr8_1:56396486-56396505 Msa1202750:intron 45.0%
GTAGAACTCTCTTCTGATGG+TGG - chr8_1:56396489-56396508 Msa1202750:intron 45.0%
AGTGGGAGAGAATCAGAGAA+GGG - chr8_1:56396634-56396653 Msa1202750:CDS 45.0%
GCAATAGCACTAAGATCTGC+AGG + chr8_1:56396684-56396703 None:intergenic 45.0%
! CTTAGTGCTATTGCAGAAGG+TGG - chr8_1:56396690-56396709 Msa1202750:CDS 45.0%
GTCAGCAGGTTTACATTGCT+AGG - chr8_1:56396745-56396764 Msa1202750:CDS 45.0%
CATTGGAAGAGGAACTGCTA+GGG - chr8_1:56396782-56396801 Msa1202750:CDS 45.0%
ATGTATCTCCTAGCTAGGAC+GGG - chr8_1:56397033-56397052 Msa1202750:intron 45.0%
! GGCACTGAGTATCAGGATTA+TGG - chr8_1:56397150-56397169 Msa1202750:intron 45.0%
CAAGAGTTATAAAGACCGGG+TGG - chr8_1:56397202-56397221 Msa1202750:intron 45.0%
ATTCCCTCTTTGGTGGAGTT+GGG + chr8_1:56397382-56397401 None:intergenic 45.0%
AATTCCCTCTTTGGTGGAGT+TGG + chr8_1:56397383-56397402 None:intergenic 45.0%
TCGAACAATTCCCTCTTTGG+TGG + chr8_1:56397389-56397408 None:intergenic 45.0%
GAGAAAAAGTGGAGCAAAGC+AGG + chr8_1:56398002-56398021 None:intergenic 45.0%
TGTCATGTTTAGAGACGGCA+AGG - chr8_1:56398037-56398056 Msa1202750:intron 45.0%
GTGAGAGACAAAGAAGGTCT+AGG - chr8_1:56398061-56398080 Msa1202750:intron 45.0%
AGAGACAAAGAAGGTCTAGG+AGG - chr8_1:56398064-56398083 Msa1202750:intron 45.0%
! CTAGGAGGCAGAAATGGATT+TGG - chr8_1:56398079-56398098 Msa1202750:intron 45.0%
! AGGAGGCAGAAATGGATTTG+GGG - chr8_1:56398081-56398100 Msa1202750:intron 45.0%
AACATCTGCAGACCATGATG+AGG - chr8_1:56398176-56398195 Msa1202750:intron 45.0%
TGCAGACCATGATGAGGTTT+CGG - chr8_1:56398182-56398201 Msa1202750:intron 45.0%
! CTAGGCAAAGTTAGTGTTGG+TGG + chr8_1:56398235-56398254 None:intergenic 45.0%
TTGCCTAGTTATGGTAGGAG+AGG - chr8_1:56398247-56398266 Msa1202750:intron 45.0%
TCTCCTCTCCTACCATAACT+AGG + chr8_1:56398253-56398272 None:intergenic 45.0%
TCAACCATCTAGACTTGCAG+TGG + chr8_1:56398392-56398411 None:intergenic 45.0%
TGCACAACCTGGTAGAATTC+TGG - chr8_1:56398620-56398639 Msa1202750:five_prime_UTR 45.0%
GAAAATGGTTCCCACACCTG+TGG + chr8_1:56394706-56394725 None:intergenic 50.0%
TCTGTCCGGTGTATTCGGTT+AGG - chr8_1:56395113-56395132 Msa1202750:three_prime_UTR 50.0%
CTGTCCGGTGTATTCGGTTA+GGG - chr8_1:56395114-56395133 Msa1202750:three_prime_UTR 50.0%
GATAGGTTAATTGAGCCGGG+AGG - chr8_1:56395406-56395425 Msa1202750:intron 50.0%
!! ATTAGGAACAGGCATCGAGG+TGG + chr8_1:56395458-56395477 None:intergenic 50.0%
! CGAATTAGGAACAGGCATCG+AGG + chr8_1:56395461-56395480 None:intergenic 50.0%
ATTCGAAGAAGCTCGAGAGG+AGG - chr8_1:56395476-56395495 Msa1202750:intron 50.0%
AGGAGGAGTAGTGAACCAAC+TGG - chr8_1:56395493-56395512 Msa1202750:intron 50.0%
TCAGGAGTGGCATAGAGTGA+CGG + chr8_1:56395559-56395578 None:intergenic 50.0%
GAGAAACTCTTGAGAAGCCG+CGG + chr8_1:56395670-56395689 None:intergenic 50.0%
GCGGCTTCTCAAGAGTTTCT+CGG - chr8_1:56395669-56395688 Msa1202750:intron 50.0%
GCTTCTCAAGAGTTTCTCGG+AGG - chr8_1:56395672-56395691 Msa1202750:intron 50.0%
TTTCTCGGAGGCCAATGTAC+AGG - chr8_1:56395684-56395703 Msa1202750:intron 50.0%
CTCCTGCTTAGCCTGTACAT+TGG + chr8_1:56395698-56395717 None:intergenic 50.0%
CAATGTACAGGCTAAGCAGG+AGG - chr8_1:56395696-56395715 Msa1202750:intron 50.0%
!! ACTGTGGTTTCTAGTTCGGC+TGG - chr8_1:56395757-56395776 Msa1202750:intron 50.0%
CGGGGTTCACACAAGTAACT+TGG + chr8_1:56395789-56395808 None:intergenic 50.0%
TTGCTCCTCCTTAAGAGGCT+CGG + chr8_1:56395809-56395828 None:intergenic 50.0%
! ATCAGCAATGGTGGCGATGT+TGG - chr8_1:56395859-56395878 Msa1202750:intron 50.0%
! TCAGCAATGGTGGCGATGTT+GGG - chr8_1:56395860-56395879 Msa1202750:intron 50.0%
CACAAGTTACACGGATGGAG+AGG - chr8_1:56396020-56396039 Msa1202750:intron 50.0%
!! TCTTCTGATGGTGGCACTCA+AGG - chr8_1:56396498-56396517 Msa1202750:CDS 50.0%
CAGTGGGAGAGAATCAGAGA+AGG - chr8_1:56396633-56396652 Msa1202750:CDS 50.0%
CCTAGCAGTTCCTCTTCCAA+TGG + chr8_1:56396784-56396803 None:intergenic 50.0%
CCATTGGAAGAGGAACTGCT+AGG - chr8_1:56396781-56396800 Msa1202750:CDS 50.0%
AGAGATGTCTCAGAGGAACC+AGG - chr8_1:56396902-56396921 Msa1202750:CDS 50.0%
AAATCTCACCTACTGCCTCC+TGG + chr8_1:56396923-56396942 None:intergenic 50.0%
CAAGAGTTGTAAACACCGGG+TGG - chr8_1:56397129-56397148 Msa1202750:intron 50.0%
TCCTGATACTAAGTGCCACC+CGG + chr8_1:56397220-56397239 None:intergenic 50.0%
GAATCAGCATTGTCTGTCCG+CGG - chr8_1:56397277-56397296 Msa1202750:intron 50.0%
AATCAGCATTGTCTGTCCGC+GGG - chr8_1:56397278-56397297 Msa1202750:intron 50.0%
TTCCCTCTTTGGTGGAGTTG+GGG + chr8_1:56397381-56397400 None:intergenic 50.0%
CAAGGCGTGAGAGACAAAGA+AGG - chr8_1:56398055-56398074 Msa1202750:intron 50.0%
GAAGGTCTAGGAGGCAGAAA+TGG - chr8_1:56398073-56398092 Msa1202750:intron 50.0%
CGTGTTCCGAAACCTCATCA+TGG + chr8_1:56398191-56398210 None:intergenic 50.0%
GAGGTTTCGGAACACGATGA+CGG - chr8_1:56398195-56398214 Msa1202750:intron 50.0%
CCATCTAGACTTGCAGTGGA+AGG + chr8_1:56398388-56398407 None:intergenic 50.0%
CCTTCCACTGCAAGTCTAGA+TGG - chr8_1:56398385-56398404 Msa1202750:intron 50.0%
GCTATGATGCATGCACAACC+TGG - chr8_1:56398609-56398628 Msa1202750:five_prime_UTR 50.0%
GAAAATGGTTCCCACACCTG+TGG + chr8_1:56394706-56394725 None:intergenic 50.0%
TCTGTCCGGTGTATTCGGTT+AGG - chr8_1:56395113-56395132 Msa1202750:three_prime_UTR 50.0%
CTGTCCGGTGTATTCGGTTA+GGG - chr8_1:56395114-56395133 Msa1202750:three_prime_UTR 50.0%
GATAGGTTAATTGAGCCGGG+AGG - chr8_1:56395406-56395425 Msa1202750:intron 50.0%
!! ATTAGGAACAGGCATCGAGG+TGG + chr8_1:56395458-56395477 None:intergenic 50.0%
! CGAATTAGGAACAGGCATCG+AGG + chr8_1:56395461-56395480 None:intergenic 50.0%
ATTCGAAGAAGCTCGAGAGG+AGG - chr8_1:56395476-56395495 Msa1202750:intron 50.0%
AGGAGGAGTAGTGAACCAAC+TGG - chr8_1:56395493-56395512 Msa1202750:intron 50.0%
TCAGGAGTGGCATAGAGTGA+CGG + chr8_1:56395559-56395578 None:intergenic 50.0%
GAGAAACTCTTGAGAAGCCG+CGG + chr8_1:56395670-56395689 None:intergenic 50.0%
GCGGCTTCTCAAGAGTTTCT+CGG - chr8_1:56395669-56395688 Msa1202750:intron 50.0%
GCTTCTCAAGAGTTTCTCGG+AGG - chr8_1:56395672-56395691 Msa1202750:intron 50.0%
TTTCTCGGAGGCCAATGTAC+AGG - chr8_1:56395684-56395703 Msa1202750:intron 50.0%
CTCCTGCTTAGCCTGTACAT+TGG + chr8_1:56395698-56395717 None:intergenic 50.0%
CAATGTACAGGCTAAGCAGG+AGG - chr8_1:56395696-56395715 Msa1202750:intron 50.0%
!! ACTGTGGTTTCTAGTTCGGC+TGG - chr8_1:56395757-56395776 Msa1202750:intron 50.0%
CGGGGTTCACACAAGTAACT+TGG + chr8_1:56395789-56395808 None:intergenic 50.0%
TTGCTCCTCCTTAAGAGGCT+CGG + chr8_1:56395809-56395828 None:intergenic 50.0%
! ATCAGCAATGGTGGCGATGT+TGG - chr8_1:56395859-56395878 Msa1202750:intron 50.0%
! TCAGCAATGGTGGCGATGTT+GGG - chr8_1:56395860-56395879 Msa1202750:intron 50.0%
CACAAGTTACACGGATGGAG+AGG - chr8_1:56396020-56396039 Msa1202750:intron 50.0%
!! TCTTCTGATGGTGGCACTCA+AGG - chr8_1:56396498-56396517 Msa1202750:CDS 50.0%
CAGTGGGAGAGAATCAGAGA+AGG - chr8_1:56396633-56396652 Msa1202750:CDS 50.0%
CCTAGCAGTTCCTCTTCCAA+TGG + chr8_1:56396784-56396803 None:intergenic 50.0%
CCATTGGAAGAGGAACTGCT+AGG - chr8_1:56396781-56396800 Msa1202750:CDS 50.0%
AGAGATGTCTCAGAGGAACC+AGG - chr8_1:56396902-56396921 Msa1202750:CDS 50.0%
AAATCTCACCTACTGCCTCC+TGG + chr8_1:56396923-56396942 None:intergenic 50.0%
CAAGAGTTGTAAACACCGGG+TGG - chr8_1:56397129-56397148 Msa1202750:intron 50.0%
TCCTGATACTAAGTGCCACC+CGG + chr8_1:56397220-56397239 None:intergenic 50.0%
GAATCAGCATTGTCTGTCCG+CGG - chr8_1:56397277-56397296 Msa1202750:intron 50.0%
AATCAGCATTGTCTGTCCGC+GGG - chr8_1:56397278-56397297 Msa1202750:intron 50.0%
TTCCCTCTTTGGTGGAGTTG+GGG + chr8_1:56397381-56397400 None:intergenic 50.0%
CAAGGCGTGAGAGACAAAGA+AGG - chr8_1:56398055-56398074 Msa1202750:intron 50.0%
GAAGGTCTAGGAGGCAGAAA+TGG - chr8_1:56398073-56398092 Msa1202750:intron 50.0%
CGTGTTCCGAAACCTCATCA+TGG + chr8_1:56398191-56398210 None:intergenic 50.0%
GAGGTTTCGGAACACGATGA+CGG - chr8_1:56398195-56398214 Msa1202750:intron 50.0%
CCATCTAGACTTGCAGTGGA+AGG + chr8_1:56398388-56398407 None:intergenic 50.0%
CCTTCCACTGCAAGTCTAGA+TGG - chr8_1:56398385-56398404 Msa1202750:intron 50.0%
GCTATGATGCATGCACAACC+TGG - chr8_1:56398609-56398628 Msa1202750:five_prime_UTR 50.0%
TGGTTGCGTGGGGAAGAAGA+AGG + chr8_1:56394800-56394819 None:intergenic 55.0%
TTCTTCCCCACGCAACCACA+AGG - chr8_1:56394802-56394821 Msa1202750:three_prime_UTR 55.0%
TAATTGAGCCGGGAGGTTCG+AGG - chr8_1:56395413-56395432 Msa1202750:intron 55.0%
AATTGAGCCGGGAGGTTCGA+GGG - chr8_1:56395414-56395433 Msa1202750:intron 55.0%
GTCACTCTATGCCACTCCTG+AGG - chr8_1:56395558-56395577 Msa1202750:intron 55.0%
GTAAGGAGAAGGCGGAAACG+AGG + chr8_1:56395623-56395642 None:intergenic 55.0%
GGCCAATGTACAGGCTAAGC+AGG - chr8_1:56395693-56395712 Msa1202750:intron 55.0%
TGTGAACCCCGAGCCTCTTA+AGG - chr8_1:56395798-56395817 Msa1202750:intron 55.0%
TGCTCCTCCTTAAGAGGCTC+GGG + chr8_1:56395808-56395827 None:intergenic 55.0%
GGAGAGAGATGGTGAGAGTG+AGG - chr8_1:56395957-56395976 Msa1202750:intron 55.0%
! CTTTGCAGAGCGTTCTGTGC+CGG + chr8_1:56396052-56396071 None:intergenic 55.0%
! GTGCTATTGCAGAAGGTGGG+CGG - chr8_1:56396694-56396713 Msa1202750:CDS 55.0%
AAGAGGAACTGCTAGGGCTG+AGG - chr8_1:56396788-56396807 Msa1202750:CDS 55.0%
GATGTCTCAGAGGAACCAGG+AGG - chr8_1:56396905-56396924 Msa1202750:CDS 55.0%
TCCTGATACTCAGTGCCACC+CGG + chr8_1:56397147-56397166 None:intergenic 55.0%
ACCGGGTGGCACTTAGTATC+AGG - chr8_1:56397216-56397235 Msa1202750:intron 55.0%
TCAAACATTGGCCCTACCCG+CGG + chr8_1:56397297-56397316 None:intergenic 55.0%
TACCCCCAACTCCACCAAAG+AGG - chr8_1:56397375-56397394 Msa1202750:CDS 55.0%
ACCCCCAACTCCACCAAAGA+GGG - chr8_1:56397376-56397395 Msa1202750:CDS 55.0%
TCCCTCTTTGGTGGAGTTGG+GGG + chr8_1:56397380-56397399 None:intergenic 55.0%
TGGTTGCGTGGGGAAGAAGA+AGG + chr8_1:56394800-56394819 None:intergenic 55.0%
TTCTTCCCCACGCAACCACA+AGG - chr8_1:56394802-56394821 Msa1202750:three_prime_UTR 55.0%
TAATTGAGCCGGGAGGTTCG+AGG - chr8_1:56395413-56395432 Msa1202750:intron 55.0%
AATTGAGCCGGGAGGTTCGA+GGG - chr8_1:56395414-56395433 Msa1202750:intron 55.0%
GTCACTCTATGCCACTCCTG+AGG - chr8_1:56395558-56395577 Msa1202750:intron 55.0%
GTAAGGAGAAGGCGGAAACG+AGG + chr8_1:56395623-56395642 None:intergenic 55.0%
GGCCAATGTACAGGCTAAGC+AGG - chr8_1:56395693-56395712 Msa1202750:intron 55.0%
TGTGAACCCCGAGCCTCTTA+AGG - chr8_1:56395798-56395817 Msa1202750:intron 55.0%
TGCTCCTCCTTAAGAGGCTC+GGG + chr8_1:56395808-56395827 None:intergenic 55.0%
GGAGAGAGATGGTGAGAGTG+AGG - chr8_1:56395957-56395976 Msa1202750:intron 55.0%
! CTTTGCAGAGCGTTCTGTGC+CGG + chr8_1:56396052-56396071 None:intergenic 55.0%
! GTGCTATTGCAGAAGGTGGG+CGG - chr8_1:56396694-56396713 Msa1202750:CDS 55.0%
AAGAGGAACTGCTAGGGCTG+AGG - chr8_1:56396788-56396807 Msa1202750:CDS 55.0%
GATGTCTCAGAGGAACCAGG+AGG - chr8_1:56396905-56396924 Msa1202750:CDS 55.0%
TCCTGATACTCAGTGCCACC+CGG + chr8_1:56397147-56397166 None:intergenic 55.0%
ACCGGGTGGCACTTAGTATC+AGG - chr8_1:56397216-56397235 Msa1202750:intron 55.0%
TCAAACATTGGCCCTACCCG+CGG + chr8_1:56397297-56397316 None:intergenic 55.0%
TACCCCCAACTCCACCAAAG+AGG - chr8_1:56397375-56397394 Msa1202750:CDS 55.0%
ACCCCCAACTCCACCAAAGA+GGG - chr8_1:56397376-56397395 Msa1202750:CDS 55.0%
TCCCTCTTTGGTGGAGTTGG+GGG + chr8_1:56397380-56397399 None:intergenic 55.0%
GCGTGGGGAAGAAGAAGGAG+TGG + chr8_1:56394795-56394814 None:intergenic 60.0%
!! AGGAACAGGCATCGAGGTGG+AGG + chr8_1:56395455-56395474 None:intergenic 60.0%
GAACCCCGAGCCTCTTAAGG+AGG - chr8_1:56395801-56395820 Msa1202750:intron 60.0%
GCTCCTCCTTAAGAGGCTCG+GGG + chr8_1:56395807-56395826 None:intergenic 60.0%
TATTGCAGAAGGTGGGCGGC+TGG - chr8_1:56396698-56396717 Msa1202750:CDS 60.0%
AGGAACTGCTAGGGCTGAGG+CGG - chr8_1:56396791-56396810 Msa1202750:CDS 60.0%
CAGAGGAACCAGGAGGCAGT+AGG - chr8_1:56396912-56396931 Msa1202750:CDS 60.0%
! ACCGGGTGGCACTGAGTATC+AGG - chr8_1:56397143-56397162 Msa1202750:intron 60.0%
AGCATTGTCTGTCCGCGGGT+AGG - chr8_1:56397282-56397301 Msa1202750:intron 60.0%
GCATTGTCTGTCCGCGGGTA+GGG - chr8_1:56397283-56397302 Msa1202750:intron 60.0%
GCGTGGGGAAGAAGAAGGAG+TGG + chr8_1:56394795-56394814 None:intergenic 60.0%
!! AGGAACAGGCATCGAGGTGG+AGG + chr8_1:56395455-56395474 None:intergenic 60.0%
GAACCCCGAGCCTCTTAAGG+AGG - chr8_1:56395801-56395820 Msa1202750:intron 60.0%
GCTCCTCCTTAAGAGGCTCG+GGG + chr8_1:56395807-56395826 None:intergenic 60.0%
TATTGCAGAAGGTGGGCGGC+TGG - chr8_1:56396698-56396717 Msa1202750:CDS 60.0%
AGGAACTGCTAGGGCTGAGG+CGG - chr8_1:56396791-56396810 Msa1202750:CDS 60.0%
CAGAGGAACCAGGAGGCAGT+AGG - chr8_1:56396912-56396931 Msa1202750:CDS 60.0%
! ACCGGGTGGCACTGAGTATC+AGG - chr8_1:56397143-56397162 Msa1202750:intron 60.0%
AGCATTGTCTGTCCGCGGGT+AGG - chr8_1:56397282-56397301 Msa1202750:intron 60.0%
GCATTGTCTGTCCGCGGGTA+GGG - chr8_1:56397283-56397302 Msa1202750:intron 60.0%
AAGCGGCGTCACCTCAGGAG+TGG + chr8_1:56395572-56395591 None:intergenic 65.0%
TCTGGAAGCGGCGTCACCTC+AGG + chr8_1:56395577-56395596 None:intergenic 65.0%
ATCACAAACGCCGTGGGCCG+CGG - chr8_1:56395650-56395669 Msa1202750:intron 65.0%
TCTTGAGAAGCCGCGGCCCA+CGG + chr8_1:56395663-56395682 None:intergenic 65.0%
AAGCGGCGTCACCTCAGGAG+TGG + chr8_1:56395572-56395591 None:intergenic 65.0%
TCTGGAAGCGGCGTCACCTC+AGG + chr8_1:56395577-56395596 None:intergenic 65.0%
ATCACAAACGCCGTGGGCCG+CGG - chr8_1:56395650-56395669 Msa1202750:intron 65.0%
TCTTGAGAAGCCGCGGCCCA+CGG + chr8_1:56395663-56395682 None:intergenic 65.0%
TGAGCCGGGAGGTTCGAGGG+CGG - chr8_1:56395417-56395436 Msa1202750:intron 70.0%
TGACCCGCCCTCGAACCTCC+CGG + chr8_1:56395424-56395443 None:intergenic 70.0%
TGAGCCGGGAGGTTCGAGGG+CGG - chr8_1:56395417-56395436 Msa1202750:intron 70.0%
TGACCCGCCCTCGAACCTCC+CGG + chr8_1:56395424-56395443 None:intergenic 70.0%
GAGCCGGGAGGTTCGAGGGC+GGG - chr8_1:56395418-56395437 Msa1202750:intron 75.0%
GAGCCGGGAGGTTCGAGGGC+GGG - chr8_1:56395418-56395437 Msa1202750:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 56394655 56398771 56394655 ID=Msa1202750;Name=Msa1202750
chr8_1 mRNA 56394655 56398771 56394655 ID=Msa1202750-mRNA-1;Parent=Msa1202750;Name=Msa1202750-mRNA-1;_AED=0.11;_eAED=0.11;_QI=171|0.75|0.6|1|0.25|0.2|5|544|444
chr8_1 exon 56394655 56395377 56394655 ID=Msa1202750-mRNA-1:exon:18373;Parent=Msa1202750-mRNA-1
chr8_1 exon 56396493 56396717 56396493 ID=Msa1202750-mRNA-1:exon:18372;Parent=Msa1202750-mRNA-1
chr8_1 exon 56396733 56396933 56396733 ID=Msa1202750-mRNA-1:exon:18371;Parent=Msa1202750-mRNA-1
chr8_1 exon 56397318 56398049 56397318 ID=Msa1202750-mRNA-1:exon:18370;Parent=Msa1202750-mRNA-1
chr8_1 exon 56398603 56398771 56398603 ID=Msa1202750-mRNA-1:exon:18369;Parent=Msa1202750-mRNA-1
chr8_1 five_prime_UTR 56398603 56398771 56398603 ID=Msa1202750-mRNA-1:five_prime_utr;Parent=Msa1202750-mRNA-1
chr8_1 five_prime_UTR 56398048 56398049 56398048 ID=Msa1202750-mRNA-1:five_prime_utr;Parent=Msa1202750-mRNA-1
chr8_1 CDS 56397318 56398047 56397318 ID=Msa1202750-mRNA-1:cds;Parent=Msa1202750-mRNA-1
chr8_1 CDS 56396733 56396933 56396733 ID=Msa1202750-mRNA-1:cds;Parent=Msa1202750-mRNA-1
chr8_1 CDS 56396493 56396717 56396493 ID=Msa1202750-mRNA-1:cds;Parent=Msa1202750-mRNA-1
chr8_1 CDS 56395199 56395377 56395199 ID=Msa1202750-mRNA-1:cds;Parent=Msa1202750-mRNA-1
chr8_1 three_prime_UTR 56394655 56395198 56394655 ID=Msa1202750-mRNA-1:three_prime_utr;Parent=Msa1202750-mRNA-1
Gene Sequence

>Msa1202750

ATGCCGACATTTACTGCTATAGCATTTGATAGGTTAATTGAGCCGGGAGGTTCGAGGGCGGGTCAAAAATCTGCCTCCACCTCGATGCCTGTTCCTAATTCGAAGAAGCTCGAGAGGAGGAGTAGTGAACCAACTGGAACTGCTAGAAAGAAGCCGCCTACTCGACCTCAATTAAAGCCGTCACTCTATGCCACTCCTGAGGTGACGCCGCTTCCAGATTCTCCTCTTCAAGATTCAACTTCCTCGTTTCCGCCTTCTCCTTACATCATCAATCACAAACGCCGTGGGCCGCGGCTTCTCAAGAGTTTCTCGGAGGCCAATGTACAGGCTAAGCAGGAGGTTTGTGAAGAAGGAAATGTTAGTGGTAAGAGCTGTGATACTGTGGTTTCTAGTTCGGCTGGTGATCTCCAAGTTACTTGTGTGAACCCCGAGCCTCTTAAGGAGGAGCAAGATAATGGAGCACAAGATACCAAAGTTAGTATCAGCAATGGTGGCGATGTTGGGCATGAGAAGAGAGAAAATGAAAGTAGTAGTGATCCTAATGGAAAGCATGTGGAAAAGCTAGTGCCGTTGAATTTGGAGAGAGATGGTGAGAGTGAGGACTTTTATGATCCACGTGATACTATGAGTTCTATGAGTTTCACAAGTTACACGGATGGAGAGGATAATACCGGCACAGAACGCTCTGCAAAGTATAGCACTGCTGCAGAGTTTTTTGACGCTTGGGAAGAACTCTCTTCTGATGGTGGCACTCAAGGTTCTCTACGACTACGTGATGTTGATGCTGAATTGCGTGAAATAAGGTTGAGTCTATTGATGGAGATAGAGAAGCGAAAGCAAATTGAAGAATCAATTAAAAGCATGCAAAGTCAGTGGGAGAGAATCAGAGAAGGGTTATCTTCTGTTGGAATTGTTTTACCTGCAGATCTTAGTGGGCGGCTGGATTCTGATCCTGTAGATGATCTATGTCAGCAGGTTTACATTGCTAGGTTCATATCAAACGCCATTGGAAGAGGAACTGCTAGGGCTGAGGCGGAGACAGAGATGAAAACCCAATTAGACTCAAAGAACTTTGAGATTTCTCGACTATTGGAACGCCTTCATTACTATGAGACCATGAATAGAGAGATGTCTCAGAGGAACCAGGAGGCAGTAGAGACGGCAAGGCGTGAGAGACAAAGAAGGTCTAGGAGGCAGAAATGGATTTGGGGCTCTATTACTACTGCCATTGTACTTGGTACTACAGCAATAGCATGGTCGTATCTCCCATCAAGTAAAGGATCAACATCTGCAGACCATGATGAGGTTTCGGAACACGATGACGGAGCCAACTAA
Protein sequence

>Msa1202750

MPTFTAIAFDRLIEPGGSRAGQKSASTSMPVPNSKKLERRSSEPTGTARKKPPTRPQLKPSLYATPEVTPLPDSPLQDSTSSFPPSPYIINHKRRGPRLLKSFSEANVQAKQEVCEEGNVSGKSCDTVVSSSAGDLQVTCVNPEPLKEEQDNGAQDTKVSISNGGDVGHEKRENESSSDPNGKHVEKLVPLNLERDGESEDFYDPRDTMSSMSFTSYTDGEDNTGTERSAKYSTAAEFFDAWEELSSDGGTQGSLRLRDVDAELREIRLSLLMEIEKRKQIEESIKSMQSQWERIREGLSSVGIVLPADLSGRLDSDPVDDLCQQVYIARFISNAIGRGTARAEAETEMKTQLDSKNFEISRLLERLHYYETMNREMSQRNQEAVETARRERQRRSRRQKWIWGSITTAIVLGTTAIAWSYLPSSKGSTSADHDEVSEHDDGAN*