Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296140 | sp|Q9MUK5|TOC64_PEA | 74.699 | 83 | 21 | 0 | 148 | 230 | 494 | 576 | 1.22e-33 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296140 | G7LE58 | 79.518 | 83 | 17 | 0 | 148 | 230 | 496 | 578 | 1.98e-33 | 137 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0467640 | Msa1296140 | -0.815121 | 1.087256e-51 | -8.615850e-47 |
| Msa1134450 | Msa1296140 | 0.893448 | 6.227230e-75 | -8.615850e-47 |
| Msa0514070 | Msa1296140 | -0.814482 | 1.506514e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296140 | MtrunA17_Chr8g0393041 | 79.518 | 83 | 17 | 0 | 148 | 230 | 496 | 578 | 3.81e-37 | 137 |
| Msa1296140 | MtrunA17_Chr3g0102921 | 74.026 | 77 | 18 | 1 | 12 | 86 | 280 | 356 | 1.18e-29 | 116 |
| Msa1296140 | MtrunA17_Chr3g0102921 | 96.552 | 29 | 1 | 0 | 5 | 33 | 158 | 186 | 1.96e-12 | 66.6 |
| Msa1296140 | MtrunA17_Chr5g0447041 | 49.524 | 105 | 47 | 3 | 12 | 110 | 275 | 379 | 6.66e-23 | 97.1 |
| Msa1296140 | MtrunA17_Chr5g0447041 | 89.655 | 29 | 3 | 0 | 5 | 33 | 153 | 181 | 1.33e-11 | 63.9 |
| Msa1296140 | MtrunA17_Chr4g0050371 | 64.706 | 68 | 24 | 0 | 163 | 230 | 520 | 587 | 2.86e-20 | 89.4 |
| Msa1296140 | MtrunA17_Chr1g0192811 | 44.286 | 70 | 39 | 0 | 165 | 234 | 124 | 193 | 2.00e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296140 | AT3G17970.1 | 67.089 | 79 | 26 | 0 | 161 | 239 | 504 | 582 | 1.71e-27 | 110 |
| Msa1296140 | AT5G09420.1 | 56.098 | 82 | 36 | 0 | 149 | 230 | 506 | 587 | 3.97e-21 | 92.0 |
| Msa1296140 | AT1G56440.2 | 50.000 | 70 | 35 | 0 | 165 | 234 | 107 | 176 | 2.79e-15 | 75.1 |
| Msa1296140 | AT1G56440.1 | 50.000 | 70 | 35 | 0 | 165 | 234 | 117 | 186 | 3.00e-15 | 74.7 |
| Msa1296140 | AT3G44730.1 | 39.583 | 96 | 52 | 2 | 12 | 101 | 218 | 313 | 9.50e-12 | 64.7 |
| Msa1296140 | AT3G44730.4 | 39.583 | 96 | 52 | 2 | 12 | 101 | 218 | 313 | 9.50e-12 | 64.7 |
| Msa1296140 | AT3G44730.2 | 39.583 | 96 | 52 | 2 | 12 | 101 | 263 | 358 | 9.56e-12 | 64.7 |
| Msa1296140 | AT3G44730.3 | 39.583 | 96 | 52 | 2 | 12 | 101 | 263 | 358 | 9.56e-12 | 64.7 |
| Msa1296140 | AT3G17970.2 | 78.378 | 37 | 8 | 0 | 161 | 197 | 504 | 540 | 1.28e-11 | 64.3 |
Find 49 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTGCTGACAACATTTC+TGG | 0.110360 | 8_3:-54962270 | None:intergenic |
| TGGTTAGTTGTGCAGGTTTA+AGG | 0.180613 | 8_3:+54961408 | Msa1296140:intron |
| TTCCTGAAGAAAATATTAAA+AGG | 0.186939 | 8_3:+54962015 | Msa1296140:CDS |
| CTGCCACTACTTATCTTTAT+AGG | 0.202154 | 8_3:-54962330 | None:intergenic |
| CGTGATAATGTTCAGAATTA+TGG | 0.203289 | 8_3:+54962153 | Msa1296140:CDS |
| GCCACCACAACTGCAGAATT+TGG | 0.215014 | 8_3:-54962127 | None:intergenic |
| AGGCAACATACTACAGTAAC+AGG | 0.292638 | 8_3:+54962400 | Msa1296140:CDS |
| AAAATATTAAAAGGGGATAT+TGG | 0.308387 | 8_3:+54962024 | Msa1296140:CDS |
| GGCTTGATTTCCCTTCTCTT+TGG | 0.318040 | 8_3:-54962309 | None:intergenic |
| AACTAATTATCATAATATTC+AGG | 0.337584 | 8_3:-54962708 | None:intergenic |
| TCTTAATCAAAGAAGTAGTT+TGG | 0.360056 | 8_3:+54962089 | Msa1296140:CDS |
| TACTATGAATGGAAACTATC+TGG | 0.372437 | 8_3:+54961717 | Msa1296140:CDS |
| TCCCTTCTCTTTGGTAATCT+CGG | 0.378444 | 8_3:-54962300 | None:intergenic |
| TCCTGAAGAAAATATTAAAA+GGG | 0.418827 | 8_3:+54962016 | Msa1296140:CDS |
| TCTCTTCTCTTGTTTAACTC+TGG | 0.429383 | 8_3:+54962228 | Msa1296140:CDS |
| TGGAAACTATCTGGTGGAAT+TGG | 0.437386 | 8_3:+54961726 | Msa1296140:CDS |
| CATTTCTCTACCAAATCAAA+AGG | 0.441421 | 8_3:+54962198 | Msa1296140:CDS |
| AGGTGCAGCTAGAGAGATGT+TGG | 0.449494 | 8_3:+54962524 | Msa1296140:CDS |
| ACTTGAGCCATGGTTACAAA+AGG | 0.453558 | 8_3:+54962590 | Msa1296140:CDS |
| AATCTAATACTCAGAGTTGA+AGG | 0.473999 | 8_3:+54962640 | Msa1296140:three_prime_UTR |
| TTCTCCAAATTCTGCAGTTG+TGG | 0.478018 | 8_3:+54962123 | Msa1296140:CDS |
| TTTCAGCTGCTGAAAGATTG+AGG | 0.479177 | 8_3:+54962617 | Msa1296140:exon |
| AGCTTCAGTATAAAATTCAA+TGG | 0.485465 | 8_3:-54962357 | None:intergenic |
| TCCAAATTCTGCAGTTGTGG+TGG | 0.496843 | 8_3:+54962126 | Msa1296140:CDS |
| GTTTGAAAGGATACTATGAA+TGG | 0.511058 | 8_3:+54961706 | Msa1296140:CDS |
| CGCCGAGATTACCAAAGAGA+AGG | 0.526826 | 8_3:+54962298 | Msa1296140:CDS |
| CCTGAAGAAAATATTAAAAG+GGG | 0.541129 | 8_3:+54962017 | Msa1296140:CDS |
| GGTGCAGCTAGAGAGATGTT+GGG | 0.552745 | 8_3:+54962525 | Msa1296140:CDS |
| TCTCTCTAGCTGCACCTCTA+CGG | 0.560147 | 8_3:-54962518 | None:intergenic |
| GACTGCATTCTATGTTTGAA+AGG | 0.563894 | 8_3:+54961693 | Msa1296140:CDS |
| GCTCAAGCGTATCTTGAGCT+TGG | 0.566479 | 8_3:+54962423 | Msa1296140:CDS |
| CTTGAGCCATGGTTACAAAA+GGG | 0.568163 | 8_3:+54962591 | Msa1296140:CDS |
| ATGTCCTTGCACTTGAGCCA+TGG | 0.569169 | 8_3:+54962580 | Msa1296140:CDS |
| GGGATATTGGTTGTATCTCA+AGG | 0.571373 | 8_3:+54962037 | Msa1296140:CDS |
| GTAACCATGGCTCAAGTGCA+AGG | 0.575415 | 8_3:-54962584 | None:intergenic |
| TTGTACAATCTGCCTCAGCT+TGG | 0.578994 | 8_3:-54962455 | None:intergenic |
| ATCCAGAAATGTTGTCAGCA+AGG | 0.579864 | 8_3:+54962268 | Msa1296140:CDS |
| AGGATCATCAAATAAAGTTG+TGG | 0.590496 | 8_3:+54961671 | Msa1296140:CDS |
| GCCGAGATTACCAAAGAGAA+GGG | 0.597447 | 8_3:+54962299 | Msa1296140:CDS |
| AGCTGCACCTCTACGGAAGT+AGG | 0.604945 | 8_3:-54962511 | None:intergenic |
| AAGCCTATAAAGATAAGTAG+TGG | 0.608435 | 8_3:+54962327 | Msa1296140:CDS |
| ATTAAACTCTGCGAAGAACA+AGG | 0.609495 | 8_3:+54962380 | Msa1296140:CDS |
| TATGAATGGAAACTATCTGG+TGG | 0.623952 | 8_3:+54961720 | Msa1296140:CDS |
| CTTCTCTTTGGTAATCTCGG+CGG | 0.640155 | 8_3:-54962297 | None:intergenic |
| TATTGGTTGTATCTCAAGGA+GGG | 0.651987 | 8_3:+54962041 | Msa1296140:CDS |
| GTGAAGGCCTACTTCCGTAG+AGG | 0.672364 | 8_3:+54962504 | Msa1296140:CDS |
| TGGCAGTTATCTCCAAGCTG+AGG | 0.688754 | 8_3:+54962443 | Msa1296140:CDS |
| GGCAACATACTACAGTAACA+GGG | 0.700855 | 8_3:+54962401 | Msa1296140:CDS |
| ATATTGGTTGTATCTCAAGG+AGG | 0.753355 | 8_3:+54962040 | Msa1296140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTAATTATCATAATATTC+AGG | - | chr8_3:54962711-54962730 | None:intergenic | 15.0% |
| !! | AACTAATTATCATAATATTC+AGG | - | chr8_3:54962711-54962730 | None:intergenic | 15.0% |
| !! | TACAAGCTTATGTTAATAAA+TGG | + | chr8_3:54961592-54961611 | Msa1296140:intron | 20.0% |
| !! | TACAAGCTTATGTTAATAAA+TGG | + | chr8_3:54961592-54961611 | Msa1296140:intron | 20.0% |
| !! | TTCCTGAAGAAAATATTAAA+AGG | + | chr8_3:54962015-54962034 | Msa1296140:CDS | 20.0% |
| !! | TCCTGAAGAAAATATTAAAA+GGG | + | chr8_3:54962016-54962035 | Msa1296140:CDS | 20.0% |
| !! | AAAATATTAAAAGGGGATAT+TGG | + | chr8_3:54962024-54962043 | Msa1296140:CDS | 20.0% |
| !!! | GAAATGAAACATTTTGATTT+GGG | - | chr8_3:54962184-54962203 | None:intergenic | 20.0% |
| !!! | AGAAATGAAACATTTTGATT+TGG | - | chr8_3:54962185-54962204 | None:intergenic | 20.0% |
| !! | TACAAGCTTATGTTAATAAA+TGG | + | chr8_3:54961592-54961611 | Msa1296140:intron | 20.0% |
| !! | TACAAGCTTATGTTAATAAA+TGG | + | chr8_3:54961592-54961611 | Msa1296140:intron | 20.0% |
| !! | TTCCTGAAGAAAATATTAAA+AGG | + | chr8_3:54962015-54962034 | Msa1296140:CDS | 20.0% |
| !! | TCCTGAAGAAAATATTAAAA+GGG | + | chr8_3:54962016-54962035 | Msa1296140:CDS | 20.0% |
| !! | AAAATATTAAAAGGGGATAT+TGG | + | chr8_3:54962024-54962043 | Msa1296140:CDS | 20.0% |
| !!! | GAAATGAAACATTTTGATTT+GGG | - | chr8_3:54962184-54962203 | None:intergenic | 20.0% |
| !!! | AGAAATGAAACATTTTGATT+TGG | - | chr8_3:54962185-54962204 | None:intergenic | 20.0% |
| !! | AGAGTTTAATATATTTCTGC+AGG | + | chr8_3:54961354-54961373 | Msa1296140:intron | 25.0% |
| ! | AGGAATAGTAGTTATAGTAT+TGG | + | chr8_3:54961388-54961407 | Msa1296140:intron | 25.0% |
| !!! | GTTTTTTGATTGACATGAAT+AGG | + | chr8_3:54961460-54961479 | Msa1296140:intron | 25.0% |
| !! | TATGTTAATAAATGGCGTTT+TGG | + | chr8_3:54961631-54961650 | Msa1296140:intron | 25.0% |
| !! | TTCCTTTTCTATACTGTAAT+TGG | + | chr8_3:54961943-54961962 | Msa1296140:intron | 25.0% |
| ! | ATCCAATTACAGTATAGAAA+AGG | - | chr8_3:54961948-54961967 | None:intergenic | 25.0% |
| ! | CCTGAAGAAAATATTAAAAG+GGG | + | chr8_3:54962017-54962036 | Msa1296140:CDS | 25.0% |
| ! | TCTTAATCAAAGAAGTAGTT+TGG | + | chr8_3:54962089-54962108 | Msa1296140:CDS | 25.0% |
| ! | AGCTTCAGTATAAAATTCAA+TGG | - | chr8_3:54962360-54962379 | None:intergenic | 25.0% |
| !!! | ATTTTCAAGGATTTTGAGTT+AGG | + | chr8_3:54962663-54962682 | Msa1296140:three_prime_UTR | 25.0% |
| !! | AGAGTTTAATATATTTCTGC+AGG | + | chr8_3:54961354-54961373 | Msa1296140:intron | 25.0% |
| ! | AGGAATAGTAGTTATAGTAT+TGG | + | chr8_3:54961388-54961407 | Msa1296140:intron | 25.0% |
| !!! | GTTTTTTGATTGACATGAAT+AGG | + | chr8_3:54961460-54961479 | Msa1296140:intron | 25.0% |
| !! | TATGTTAATAAATGGCGTTT+TGG | + | chr8_3:54961631-54961650 | Msa1296140:intron | 25.0% |
| !! | TTCCTTTTCTATACTGTAAT+TGG | + | chr8_3:54961943-54961962 | Msa1296140:intron | 25.0% |
| ! | ATCCAATTACAGTATAGAAA+AGG | - | chr8_3:54961948-54961967 | None:intergenic | 25.0% |
| ! | CCTGAAGAAAATATTAAAAG+GGG | + | chr8_3:54962017-54962036 | Msa1296140:CDS | 25.0% |
| ! | TCTTAATCAAAGAAGTAGTT+TGG | + | chr8_3:54962089-54962108 | Msa1296140:CDS | 25.0% |
| ! | AGCTTCAGTATAAAATTCAA+TGG | - | chr8_3:54962360-54962379 | None:intergenic | 25.0% |
| !!! | ATTTTCAAGGATTTTGAGTT+AGG | + | chr8_3:54962663-54962682 | Msa1296140:three_prime_UTR | 25.0% |
| !!! | TTCTGCAGGTTTTTTAATTC+AGG | + | chr8_3:54961368-54961387 | Msa1296140:intron | 30.0% |
| TCATGTCAATCAAAAAACGA+TGG | - | chr8_3:54961458-54961477 | None:intergenic | 30.0% | |
| !!! | TTTTGGAACTTGAAAATGCA+GGG | + | chr8_3:54961648-54961667 | Msa1296140:intron | 30.0% |
| AGGATCATCAAATAAAGTTG+TGG | + | chr8_3:54961671-54961690 | Msa1296140:CDS | 30.0% | |
| GTTTGAAAGGATACTATGAA+TGG | + | chr8_3:54961706-54961725 | Msa1296140:CDS | 30.0% | |
| TACTATGAATGGAAACTATC+TGG | + | chr8_3:54961717-54961736 | Msa1296140:CDS | 30.0% | |
| ! | CCCCTTTTAATATTTTCTTC+AGG | - | chr8_3:54962020-54962039 | None:intergenic | 30.0% |
| ! | CGTGATAATGTTCAGAATTA+TGG | + | chr8_3:54962153-54962172 | Msa1296140:CDS | 30.0% |
| !!! | ATGAAACATTTTGATTTGGG+AGG | - | chr8_3:54962181-54962200 | None:intergenic | 30.0% |
| CATTTCTCTACCAAATCAAA+AGG | + | chr8_3:54962198-54962217 | Msa1296140:CDS | 30.0% | |
| !! | AGAAATCGAACCTTTTGATT+TGG | - | chr8_3:54962211-54962230 | None:intergenic | 30.0% |
| AAGCCTATAAAGATAAGTAG+TGG | + | chr8_3:54962327-54962346 | Msa1296140:CDS | 30.0% | |
| AATCTAATACTCAGAGTTGA+AGG | + | chr8_3:54962640-54962659 | Msa1296140:three_prime_UTR | 30.0% | |
| !!! | TTCTGCAGGTTTTTTAATTC+AGG | + | chr8_3:54961368-54961387 | Msa1296140:intron | 30.0% |
| TCATGTCAATCAAAAAACGA+TGG | - | chr8_3:54961458-54961477 | None:intergenic | 30.0% | |
| !!! | TTTTGGAACTTGAAAATGCA+GGG | + | chr8_3:54961648-54961667 | Msa1296140:intron | 30.0% |
| AGGATCATCAAATAAAGTTG+TGG | + | chr8_3:54961671-54961690 | Msa1296140:CDS | 30.0% | |
| GTTTGAAAGGATACTATGAA+TGG | + | chr8_3:54961706-54961725 | Msa1296140:CDS | 30.0% | |
| TACTATGAATGGAAACTATC+TGG | + | chr8_3:54961717-54961736 | Msa1296140:CDS | 30.0% | |
| ! | CCCCTTTTAATATTTTCTTC+AGG | - | chr8_3:54962020-54962039 | None:intergenic | 30.0% |
| ! | CGTGATAATGTTCAGAATTA+TGG | + | chr8_3:54962153-54962172 | Msa1296140:CDS | 30.0% |
| !!! | ATGAAACATTTTGATTTGGG+AGG | - | chr8_3:54962181-54962200 | None:intergenic | 30.0% |
| CATTTCTCTACCAAATCAAA+AGG | + | chr8_3:54962198-54962217 | Msa1296140:CDS | 30.0% | |
| !! | AGAAATCGAACCTTTTGATT+TGG | - | chr8_3:54962211-54962230 | None:intergenic | 30.0% |
| AAGCCTATAAAGATAAGTAG+TGG | + | chr8_3:54962327-54962346 | Msa1296140:CDS | 30.0% | |
| AATCTAATACTCAGAGTTGA+AGG | + | chr8_3:54962640-54962659 | Msa1296140:three_prime_UTR | 30.0% | |
| !! | ATAGTATTGGTTAGTTGTGC+AGG | + | chr8_3:54961401-54961420 | Msa1296140:intron | 35.0% |
| !!! | GTTTTGGAACTTGAAAATGC+AGG | + | chr8_3:54961647-54961666 | Msa1296140:intron | 35.0% |
| GACTGCATTCTATGTTTGAA+AGG | + | chr8_3:54961693-54961712 | Msa1296140:CDS | 35.0% | |
| TATGAATGGAAACTATCTGG+TGG | + | chr8_3:54961720-54961739 | Msa1296140:CDS | 35.0% | |
| !!! | CACAACAATTTTTTGCAGCT+TGG | + | chr8_3:54961988-54962007 | Msa1296140:intron | 35.0% |
| ! | ATATTGGTTGTATCTCAAGG+AGG | + | chr8_3:54962040-54962059 | Msa1296140:CDS | 35.0% |
| ! | TATTGGTTGTATCTCAAGGA+GGG | + | chr8_3:54962041-54962060 | Msa1296140:CDS | 35.0% |
| ! | TCTCTTCTCTTGTTTAACTC+TGG | + | chr8_3:54962228-54962247 | Msa1296140:CDS | 35.0% |
| CTGCCACTACTTATCTTTAT+AGG | - | chr8_3:54962333-54962352 | None:intergenic | 35.0% | |
| ATTAAACTCTGCGAAGAACA+AGG | + | chr8_3:54962380-54962399 | Msa1296140:CDS | 35.0% | |
| ! | TCTTGACAAAAAGAGTGTGA+AGG | + | chr8_3:54962488-54962507 | Msa1296140:CDS | 35.0% |
| ! | TCAGAGTTGAAGGATTTTCA+AGG | + | chr8_3:54962650-54962669 | Msa1296140:three_prime_UTR | 35.0% |
| !!! | TTCAAGGATTTTGAGTTAGG+AGG | + | chr8_3:54962666-54962685 | Msa1296140:three_prime_UTR | 35.0% |
| !! | ATAGTATTGGTTAGTTGTGC+AGG | + | chr8_3:54961401-54961420 | Msa1296140:intron | 35.0% |
| !!! | GTTTTGGAACTTGAAAATGC+AGG | + | chr8_3:54961647-54961666 | Msa1296140:intron | 35.0% |
| GACTGCATTCTATGTTTGAA+AGG | + | chr8_3:54961693-54961712 | Msa1296140:CDS | 35.0% | |
| TATGAATGGAAACTATCTGG+TGG | + | chr8_3:54961720-54961739 | Msa1296140:CDS | 35.0% | |
| !!! | CACAACAATTTTTTGCAGCT+TGG | + | chr8_3:54961988-54962007 | Msa1296140:intron | 35.0% |
| ! | ATATTGGTTGTATCTCAAGG+AGG | + | chr8_3:54962040-54962059 | Msa1296140:CDS | 35.0% |
| ! | TATTGGTTGTATCTCAAGGA+GGG | + | chr8_3:54962041-54962060 | Msa1296140:CDS | 35.0% |
| ! | TCTCTTCTCTTGTTTAACTC+TGG | + | chr8_3:54962228-54962247 | Msa1296140:CDS | 35.0% |
| CTGCCACTACTTATCTTTAT+AGG | - | chr8_3:54962333-54962352 | None:intergenic | 35.0% | |
| ATTAAACTCTGCGAAGAACA+AGG | + | chr8_3:54962380-54962399 | Msa1296140:CDS | 35.0% | |
| ! | TCTTGACAAAAAGAGTGTGA+AGG | + | chr8_3:54962488-54962507 | Msa1296140:CDS | 35.0% |
| ! | TCAGAGTTGAAGGATTTTCA+AGG | + | chr8_3:54962650-54962669 | Msa1296140:three_prime_UTR | 35.0% |
| !!! | TTCAAGGATTTTGAGTTAGG+AGG | + | chr8_3:54962666-54962685 | Msa1296140:three_prime_UTR | 35.0% |
| CTTAGAGATGAGACTCACAA+TGG | + | chr8_3:54961321-54961340 | Msa1296140:intron | 40.0% | |
| ! | TGGTTAGTTGTGCAGGTTTA+AGG | + | chr8_3:54961408-54961427 | Msa1296140:intron | 40.0% |
| ! | TGTGCAGGTTTAAGGTTGTT+TGG | + | chr8_3:54961416-54961435 | Msa1296140:intron | 40.0% |
| AGGTTGTTTGGTTGTTGTGT+TGG | + | chr8_3:54961428-54961447 | Msa1296140:intron | 40.0% | |
| GGTTGTTTGGTTGTTGTGTT+GGG | + | chr8_3:54961429-54961448 | Msa1296140:intron | 40.0% | |
| TACAACATACACAGTCTGCA+AGG | - | chr8_3:54961501-54961520 | None:intergenic | 40.0% | |
| TCTCATCATGTTGCTAGACA+TGG | + | chr8_3:54961522-54961541 | Msa1296140:intron | 40.0% | |
| CTATTGTGCAGATCAGAACA+TGG | + | chr8_3:54961545-54961564 | Msa1296140:intron | 40.0% | |
| TGGAAACTATCTGGTGGAAT+TGG | + | chr8_3:54961726-54961745 | Msa1296140:CDS | 40.0% | |
| TGCTGATATTCACCGTTAAG+TGG | + | chr8_3:54961830-54961849 | Msa1296140:intron | 40.0% | |
| TTGAGCTACTGTCCACTTAA+CGG | - | chr8_3:54961845-54961864 | None:intergenic | 40.0% | |
| TTCAGGGTAAACTGGTAAAC+AGG | + | chr8_3:54961879-54961898 | Msa1296140:intron | 40.0% | |
| ! | GGGATATTGGTTGTATCTCA+AGG | + | chr8_3:54962037-54962056 | Msa1296140:CDS | 40.0% |
| TTCTCCAAATTCTGCAGTTG+TGG | + | chr8_3:54962123-54962142 | Msa1296140:CDS | 40.0% | |
| ATCCAGAAATGTTGTCAGCA+AGG | + | chr8_3:54962268-54962287 | Msa1296140:CDS | 40.0% | |
| TTCCTTGCTGACAACATTTC+TGG | - | chr8_3:54962273-54962292 | None:intergenic | 40.0% | |
| ! | TCCCTTCTCTTTGGTAATCT+CGG | - | chr8_3:54962303-54962322 | None:intergenic | 40.0% |
| AGGCAACATACTACAGTAAC+AGG | + | chr8_3:54962400-54962419 | Msa1296140:CDS | 40.0% | |
| GGCAACATACTACAGTAACA+GGG | + | chr8_3:54962401-54962420 | Msa1296140:CDS | 40.0% | |
| ACTTGAGCCATGGTTACAAA+AGG | + | chr8_3:54962590-54962609 | Msa1296140:CDS | 40.0% | |
| CTTGAGCCATGGTTACAAAA+GGG | + | chr8_3:54962591-54962610 | Msa1296140:CDS | 40.0% | |
| ! | AAACAGCCCTTTTGTAACCA+TGG | - | chr8_3:54962600-54962619 | None:intergenic | 40.0% |
| TTTCAGCTGCTGAAAGATTG+AGG | + | chr8_3:54962617-54962636 | Msa1296140:exon | 40.0% | |
| CTTAGAGATGAGACTCACAA+TGG | + | chr8_3:54961321-54961340 | Msa1296140:intron | 40.0% | |
| ! | TGGTTAGTTGTGCAGGTTTA+AGG | + | chr8_3:54961408-54961427 | Msa1296140:intron | 40.0% |
| ! | TGTGCAGGTTTAAGGTTGTT+TGG | + | chr8_3:54961416-54961435 | Msa1296140:intron | 40.0% |
| AGGTTGTTTGGTTGTTGTGT+TGG | + | chr8_3:54961428-54961447 | Msa1296140:intron | 40.0% | |
| GGTTGTTTGGTTGTTGTGTT+GGG | + | chr8_3:54961429-54961448 | Msa1296140:intron | 40.0% | |
| TACAACATACACAGTCTGCA+AGG | - | chr8_3:54961501-54961520 | None:intergenic | 40.0% | |
| TCTCATCATGTTGCTAGACA+TGG | + | chr8_3:54961522-54961541 | Msa1296140:intron | 40.0% | |
| CTATTGTGCAGATCAGAACA+TGG | + | chr8_3:54961545-54961564 | Msa1296140:intron | 40.0% | |
| TGGAAACTATCTGGTGGAAT+TGG | + | chr8_3:54961726-54961745 | Msa1296140:CDS | 40.0% | |
| TGCTGATATTCACCGTTAAG+TGG | + | chr8_3:54961830-54961849 | Msa1296140:intron | 40.0% | |
| TTGAGCTACTGTCCACTTAA+CGG | - | chr8_3:54961845-54961864 | None:intergenic | 40.0% | |
| TTCAGGGTAAACTGGTAAAC+AGG | + | chr8_3:54961879-54961898 | Msa1296140:intron | 40.0% | |
| ! | GGGATATTGGTTGTATCTCA+AGG | + | chr8_3:54962037-54962056 | Msa1296140:CDS | 40.0% |
| TTCTCCAAATTCTGCAGTTG+TGG | + | chr8_3:54962123-54962142 | Msa1296140:CDS | 40.0% | |
| ATCCAGAAATGTTGTCAGCA+AGG | + | chr8_3:54962268-54962287 | Msa1296140:CDS | 40.0% | |
| TTCCTTGCTGACAACATTTC+TGG | - | chr8_3:54962273-54962292 | None:intergenic | 40.0% | |
| ! | TCCCTTCTCTTTGGTAATCT+CGG | - | chr8_3:54962303-54962322 | None:intergenic | 40.0% |
| AGGCAACATACTACAGTAAC+AGG | + | chr8_3:54962400-54962419 | Msa1296140:CDS | 40.0% | |
| GGCAACATACTACAGTAACA+GGG | + | chr8_3:54962401-54962420 | Msa1296140:CDS | 40.0% | |
| ACTTGAGCCATGGTTACAAA+AGG | + | chr8_3:54962590-54962609 | Msa1296140:CDS | 40.0% | |
| CTTGAGCCATGGTTACAAAA+GGG | + | chr8_3:54962591-54962610 | Msa1296140:CDS | 40.0% | |
| ! | AAACAGCCCTTTTGTAACCA+TGG | - | chr8_3:54962600-54962619 | None:intergenic | 40.0% |
| TTTCAGCTGCTGAAAGATTG+AGG | + | chr8_3:54962617-54962636 | Msa1296140:exon | 40.0% | |
| TGGAACTTGAAAATGCAGGG+AGG | + | chr8_3:54961651-54961670 | Msa1296140:intron | 45.0% | |
| GGAATTGGTGTGTAGAGGTA+TGG | + | chr8_3:54961741-54961760 | Msa1296140:intron | 45.0% | |
| ! | ATTGGTGTGTAGAGGTATGG+TGG | + | chr8_3:54961744-54961763 | Msa1296140:intron | 45.0% |
| ACTTTCACTGCCAACTATGG+AGG | - | chr8_3:54961811-54961830 | None:intergenic | 45.0% | |
| AGCACTTTCACTGCCAACTA+TGG | - | chr8_3:54961814-54961833 | None:intergenic | 45.0% | |
| AAGCATAGCGCTCAGATTCA+GGG | + | chr8_3:54961863-54961882 | Msa1296140:intron | 45.0% | |
| TCCAAATTCTGCAGTTGTGG+TGG | + | chr8_3:54962126-54962145 | Msa1296140:CDS | 45.0% | |
| ! | CTTCTCTTTGGTAATCTCGG+CGG | - | chr8_3:54962300-54962319 | None:intergenic | 45.0% |
| GCCGAGATTACCAAAGAGAA+GGG | + | chr8_3:54962299-54962318 | Msa1296140:CDS | 45.0% | |
| GGCTTGATTTCCCTTCTCTT+TGG | - | chr8_3:54962312-54962331 | None:intergenic | 45.0% | |
| TTGTACAATCTGCCTCAGCT+TGG | - | chr8_3:54962458-54962477 | None:intergenic | 45.0% | |
| TGGAACTTGAAAATGCAGGG+AGG | + | chr8_3:54961651-54961670 | Msa1296140:intron | 45.0% | |
| GGAATTGGTGTGTAGAGGTA+TGG | + | chr8_3:54961741-54961760 | Msa1296140:intron | 45.0% | |
| ! | ATTGGTGTGTAGAGGTATGG+TGG | + | chr8_3:54961744-54961763 | Msa1296140:intron | 45.0% |
| ACTTTCACTGCCAACTATGG+AGG | - | chr8_3:54961811-54961830 | None:intergenic | 45.0% | |
| AGCACTTTCACTGCCAACTA+TGG | - | chr8_3:54961814-54961833 | None:intergenic | 45.0% | |
| AAGCATAGCGCTCAGATTCA+GGG | + | chr8_3:54961863-54961882 | Msa1296140:intron | 45.0% | |
| TCCAAATTCTGCAGTTGTGG+TGG | + | chr8_3:54962126-54962145 | Msa1296140:CDS | 45.0% | |
| ! | CTTCTCTTTGGTAATCTCGG+CGG | - | chr8_3:54962300-54962319 | None:intergenic | 45.0% |
| GCCGAGATTACCAAAGAGAA+GGG | + | chr8_3:54962299-54962318 | Msa1296140:CDS | 45.0% | |
| GGCTTGATTTCCCTTCTCTT+TGG | - | chr8_3:54962312-54962331 | None:intergenic | 45.0% | |
| TTGTACAATCTGCCTCAGCT+TGG | - | chr8_3:54962458-54962477 | None:intergenic | 45.0% | |
| CACAGTCTGCAAGGTTCTCA+AGG | - | chr8_3:54961492-54961511 | None:intergenic | 50.0% | |
| CTGGTGGAATTGGTGTGTAG+AGG | + | chr8_3:54961736-54961755 | Msa1296140:intron | 50.0% | |
| ! | AGAGGTATGGTGGAACTGTG+AGG | + | chr8_3:54961754-54961773 | Msa1296140:intron | 50.0% |
| AGACGGAGAGATCTTCGGTA+AGG | - | chr8_3:54961787-54961806 | None:intergenic | 50.0% | |
| GAGGAAGACGGAGAGATCTT+CGG | - | chr8_3:54961792-54961811 | None:intergenic | 50.0% | |
| TCTCCGTCTTCCTCCATAGT+TGG | + | chr8_3:54961798-54961817 | Msa1296140:intron | 50.0% | |
| CTGCCAACTATGGAGGAAGA+CGG | - | chr8_3:54961804-54961823 | None:intergenic | 50.0% | |
| CAAGCATAGCGCTCAGATTC+AGG | + | chr8_3:54961862-54961881 | Msa1296140:intron | 50.0% | |
| CGCTCAGATTCAGGGTAAAC+TGG | + | chr8_3:54961871-54961890 | Msa1296140:intron | 50.0% | |
| GCCACCACAACTGCAGAATT+TGG | - | chr8_3:54962130-54962149 | None:intergenic | 50.0% | |
| CGCCGAGATTACCAAAGAGA+AGG | + | chr8_3:54962298-54962317 | Msa1296140:CDS | 50.0% | |
| GCTCAAGCGTATCTTGAGCT+TGG | + | chr8_3:54962423-54962442 | Msa1296140:CDS | 50.0% | |
| TGGCAGTTATCTCCAAGCTG+AGG | + | chr8_3:54962443-54962462 | Msa1296140:CDS | 50.0% | |
| TCTCTCTAGCTGCACCTCTA+CGG | - | chr8_3:54962521-54962540 | None:intergenic | 50.0% | |
| AGGTGCAGCTAGAGAGATGT+TGG | + | chr8_3:54962524-54962543 | Msa1296140:CDS | 50.0% | |
| GGTGCAGCTAGAGAGATGTT+GGG | + | chr8_3:54962525-54962544 | Msa1296140:CDS | 50.0% | |
| ATGTCCTTGCACTTGAGCCA+TGG | + | chr8_3:54962580-54962599 | Msa1296140:CDS | 50.0% | |
| GTAACCATGGCTCAAGTGCA+AGG | - | chr8_3:54962587-54962606 | None:intergenic | 50.0% | |
| CACAGTCTGCAAGGTTCTCA+AGG | - | chr8_3:54961492-54961511 | None:intergenic | 50.0% | |
| CTGGTGGAATTGGTGTGTAG+AGG | + | chr8_3:54961736-54961755 | Msa1296140:intron | 50.0% | |
| ! | AGAGGTATGGTGGAACTGTG+AGG | + | chr8_3:54961754-54961773 | Msa1296140:intron | 50.0% |
| AGACGGAGAGATCTTCGGTA+AGG | - | chr8_3:54961787-54961806 | None:intergenic | 50.0% | |
| GAGGAAGACGGAGAGATCTT+CGG | - | chr8_3:54961792-54961811 | None:intergenic | 50.0% | |
| TCTCCGTCTTCCTCCATAGT+TGG | + | chr8_3:54961798-54961817 | Msa1296140:intron | 50.0% | |
| CTGCCAACTATGGAGGAAGA+CGG | - | chr8_3:54961804-54961823 | None:intergenic | 50.0% | |
| CAAGCATAGCGCTCAGATTC+AGG | + | chr8_3:54961862-54961881 | Msa1296140:intron | 50.0% | |
| CGCTCAGATTCAGGGTAAAC+TGG | + | chr8_3:54961871-54961890 | Msa1296140:intron | 50.0% | |
| GCCACCACAACTGCAGAATT+TGG | - | chr8_3:54962130-54962149 | None:intergenic | 50.0% | |
| CGCCGAGATTACCAAAGAGA+AGG | + | chr8_3:54962298-54962317 | Msa1296140:CDS | 50.0% | |
| GCTCAAGCGTATCTTGAGCT+TGG | + | chr8_3:54962423-54962442 | Msa1296140:CDS | 50.0% | |
| TGGCAGTTATCTCCAAGCTG+AGG | + | chr8_3:54962443-54962462 | Msa1296140:CDS | 50.0% | |
| TCTCTCTAGCTGCACCTCTA+CGG | - | chr8_3:54962521-54962540 | None:intergenic | 50.0% | |
| AGGTGCAGCTAGAGAGATGT+TGG | + | chr8_3:54962524-54962543 | Msa1296140:CDS | 50.0% | |
| GGTGCAGCTAGAGAGATGTT+GGG | + | chr8_3:54962525-54962544 | Msa1296140:CDS | 50.0% | |
| ATGTCCTTGCACTTGAGCCA+TGG | + | chr8_3:54962580-54962599 | Msa1296140:CDS | 50.0% | |
| GTAACCATGGCTCAAGTGCA+AGG | - | chr8_3:54962587-54962606 | None:intergenic | 50.0% | |
| GTGAAGGCCTACTTCCGTAG+AGG | + | chr8_3:54962504-54962523 | Msa1296140:CDS | 55.0% | |
| AGCTGCACCTCTACGGAAGT+AGG | - | chr8_3:54962514-54962533 | None:intergenic | 55.0% | |
| GTGAAGGCCTACTTCCGTAG+AGG | + | chr8_3:54962504-54962523 | Msa1296140:CDS | 55.0% | |
| AGCTGCACCTCTACGGAAGT+AGG | - | chr8_3:54962514-54962533 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 54961235 | 54962842 | 54961235 | ID=Msa1296140;Name=Msa1296140 |
| chr8_3 | mRNA | 54961235 | 54962842 | 54961235 | ID=Msa1296140-mRNA-1;Parent=Msa1296140;Name=Msa1296140-mRNA-1;_AED=0.32;_eAED=0.34;_QI=0|0|0.25|1|0|0.25|4|213|239 |
| chr8_3 | exon | 54961235 | 54961242 | 54961235 | ID=Msa1296140-mRNA-1:exon:15768;Parent=Msa1296140-mRNA-1 |
| chr8_3 | exon | 54961423 | 54961429 | 54961423 | ID=Msa1296140-mRNA-1:exon:15769;Parent=Msa1296140-mRNA-1 |
| chr8_3 | exon | 54961669 | 54961749 | 54961669 | ID=Msa1296140-mRNA-1:exon:15770;Parent=Msa1296140-mRNA-1 |
| chr8_3 | exon | 54962006 | 54962842 | 54962006 | ID=Msa1296140-mRNA-1:exon:15771;Parent=Msa1296140-mRNA-1 |
| chr8_3 | CDS | 54961235 | 54961242 | 54961235 | ID=Msa1296140-mRNA-1:cds;Parent=Msa1296140-mRNA-1 |
| chr8_3 | CDS | 54961423 | 54961429 | 54961423 | ID=Msa1296140-mRNA-1:cds;Parent=Msa1296140-mRNA-1 |
| chr8_3 | CDS | 54961669 | 54961749 | 54961669 | ID=Msa1296140-mRNA-1:cds;Parent=Msa1296140-mRNA-1 |
| chr8_3 | CDS | 54962006 | 54962629 | 54962006 | ID=Msa1296140-mRNA-1:cds;Parent=Msa1296140-mRNA-1 |
| chr8_3 | three_prime_UTR | 54962630 | 54962842 | 54962630 | ID=Msa1296140-mRNA-1:three_prime_utr;Parent=Msa1296140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
