AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0514070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514070 MtrunA17_Chr5g0402101 59.135 208 39 4 99 267 15 215 1.15e-74 226
Msa0514070 MtrunA17_Chr8g0393061 50.000 110 53 1 158 267 185 292 2.07e-28 109
Msa0514070 MtrunA17_Chr8g0349601 47.222 108 55 1 160 267 175 280 2.33e-25 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514070 AT3G11400.1 46.296 108 57 1 160 267 188 294 4.17e-25 101
Msa0514070 AT3G11400.2 46.296 108 57 1 160 267 215 321 7.97e-25 101
Msa0514070 AT5G06000.1 44.860 107 58 1 160 266 181 286 5.30e-24 99.0

Find 79 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTATGACCAGAGCTTCT+TGG 0.303721 3_4:+64729722 None:intergenic
CCTATACTTAGGTTGTTGTT+GGG 0.330100 3_4:+64729339 None:intergenic
TGGAAAAGCTGAAGCAAATC+AGG 0.330156 3_4:+64729530 None:intergenic
GAAAACAAAAGCAGAAGGTT+TGG 0.364194 3_4:+64732996 None:intergenic
AAACTCAACGTAAACAACTA+TGG 0.373456 3_4:+64729213 None:intergenic
TCTGGCTGTAGTGCCCGTTT+TGG 0.374535 3_4:-64729461 Msa0514070:CDS
GCCTATACTTAGGTTGTTGT+TGG 0.395770 3_4:+64729338 None:intergenic
AACCCTGATCTCCTTAAGTT+CGG 0.400139 3_4:-64732490 Msa0514070:CDS
CCGTAATACCCATGTCTTTG+TGG 0.404244 3_4:+64732452 None:intergenic
GATTATATACCTCCGATTGC+GGG 0.409992 3_4:-64729677 Msa0514070:CDS
TCTCTTCCACAAAAGCCTTC+AGG 0.423566 3_4:+64729636 None:intergenic
ACCCTGATCTCCTTAAGTTC+GGG 0.425845 3_4:-64732489 Msa0514070:CDS
CCACAAAGACATGGGTATTA+CGG 0.427307 3_4:-64732452 Msa0514070:CDS
TCCCCGAACTTAAGGAGATC+AGG 0.428112 3_4:+64732487 None:intergenic
CATAGCTGTCCCCGAACTTA+AGG 0.439402 3_4:+64732479 None:intergenic
TTTGTGGAAGAGATGACTAC+TGG 0.442631 3_4:-64729626 Msa0514070:CDS
CAAAGTTAACAAAGCCAAAA+CGG 0.447858 3_4:+64729447 None:intergenic
TCAGGGTTCCTTGTCTCGTA+TGG 0.453549 3_4:+64729548 None:intergenic
TTCCCTCGTCCAAGAAGCTC+TGG 0.458758 3_4:-64729731 Msa0514070:CDS
CAATTTAATCAACAAGTTTG+AGG 0.459828 3_4:-64733034 Msa0514070:CDS
GATCGAAGATAAGAAAAGCT+TGG 0.462275 3_4:-64733090 Msa0514070:five_prime_UTR
ATTCTTCTTGTTGTTGTCAT+CGG 0.468802 3_4:+64729598 None:intergenic
ATTTCGTACTTAGAGTTGAA+TGG 0.471893 3_4:-64729367 Msa0514070:CDS
CCCTGCCTGGAGATGACTAC+CGG 0.474514 3_4:-64732562 Msa0514070:CDS
GGTACAAACATACCCGTAAG+AGG 0.480271 3_4:+64732586 None:intergenic
TATGTTTGTACCTCCCTGCC+TGG 0.488397 3_4:-64732575 Msa0514070:CDS
AAAGTTAACAAAGCCAAAAC+GGG 0.488552 3_4:+64729448 None:intergenic
TCCACAAAAGCCTTCAGGTA+TGG 0.489000 3_4:+64729641 None:intergenic
CCCGGTAGTCATCTCCAGGC+AGG 0.500095 3_4:+64732561 None:intergenic
AGCACTCTGAGCAGCTTCCC+TGG 0.503852 3_4:+64729421 None:intergenic
TGACCAGAGCTTCTTGGACG+AGG 0.504818 3_4:+64729728 None:intergenic
AGTGCTATTGAAAGAGTCAA+TGG 0.505594 3_4:-64729404 Msa0514070:CDS
TACTTAGGTTGTTGTTGGGG+AGG 0.507352 3_4:+64729343 None:intergenic
CTATACTTAGGTTGTTGTTG+GGG 0.510745 3_4:+64729340 None:intergenic
CCCAACAACAACCTAAGTAT+AGG 0.520587 3_4:-64729339 Msa0514070:exon
ATAAATAGTAGCCTATACTT+AGG 0.524609 3_4:+64729328 None:intergenic
AAAAGAAGTCTGTTCTGGTA+GGG 0.527000 3_4:-64732525 Msa0514070:CDS
GCTTTGTTAACTTTGCCACC+AGG 0.528180 3_4:-64729439 Msa0514070:CDS
GGTACAAACATACCCGCAAT+CGG 0.539291 3_4:+64729665 None:intergenic
TAATGACATGACCAAAAGAC+TGG 0.543219 3_4:+64729510 None:intergenic
ATGACCCGGTAGTCATCTCC+AGG 0.543487 3_4:+64732557 None:intergenic
GACCAGAGCTTCTTGGACGA+GGG 0.546189 3_4:+64729729 None:intergenic
GTGCTATTGAAAGAGTCAAT+GGG 0.563046 3_4:-64729403 Msa0514070:CDS
CTCATGTCCGTGATCCCTCA+TGG 0.563988 3_4:-64732411 Msa0514070:CDS
TACAAACATACCCGTAAGAG+GGG 0.564254 3_4:+64732588 None:intergenic
CAACTCTAAGTACGAAATTG+TGG 0.564273 3_4:+64729372 None:intergenic
CAGGGTTCCTTGTCTCGTAT+GGG 0.564470 3_4:+64729549 None:intergenic
AAAGAAGTCTGTTCTGGTAG+GGG 0.566121 3_4:-64732524 Msa0514070:CDS
TGATTATATACCTCCGATTG+CGG 0.569351 3_4:-64729678 Msa0514070:CDS
GTTGCTGTTGATCAAGACTC+TGG 0.576816 3_4:-64729479 Msa0514070:CDS
CTGTAGAAAACAAAAGCAGA+AGG 0.584130 3_4:+64732991 None:intergenic
CCCCGAACTTAAGGAGATCA+GGG 0.592136 3_4:+64732488 None:intergenic
CTTTGTTAACTTTGCCACCA+GGG 0.593347 3_4:-64729438 Msa0514070:CDS
GTTTGTACCTCCATACCTGA+AGG 0.596305 3_4:-64729651 Msa0514070:CDS
CTATGCCGTCCACAAAGACA+TGG 0.597462 3_4:-64732461 Msa0514070:CDS
CAAACCACCATGAGGGATCA+CGG 0.602901 3_4:+64732404 None:intergenic
GTCTTGATCAACAGCAACAT+CGG 0.604102 3_4:+64729484 None:intergenic
GGTTCCTTGTCTCGTATGGG+AGG 0.604191 3_4:+64729552 None:intergenic
AATACCCATGTCTTTGTGGA+CGG 0.607168 3_4:+64732456 None:intergenic
GCAACCTCCCATACGAGACA+AGG 0.608270 3_4:-64729556 Msa0514070:CDS
CCGGTAGTCATCTCCAGGCA+GGG 0.612399 3_4:+64732562 None:intergenic
TTGTGGAAGAGATGACTACT+GGG 0.618796 3_4:-64729625 Msa0514070:CDS
GTACAAACATACCCGTAAGA+GGG 0.619660 3_4:+64732587 None:intergenic
GGAAAAGCTGAAGCAAATCA+GGG 0.624618 3_4:+64729531 None:intergenic
ACAAAAGCCTTCAGGTATGG+AGG 0.634993 3_4:+64729644 None:intergenic
CCTGCCTGGAGATGACTACC+GGG 0.635772 3_4:-64732561 Msa0514070:CDS
CATGAGGGATCACGGACATG+AGG 0.644139 3_4:+64732412 None:intergenic
TCGAATGCAAACCACCATGA+GGG 0.652949 3_4:+64732397 None:intergenic
CCCTGATCTCCTTAAGTTCG+GGG 0.661793 3_4:-64732488 Msa0514070:CDS
GTCGAATGCAAACCACCATG+AGG 0.672918 3_4:+64732396 None:intergenic
TATGCCGTCCACAAAGACAT+GGG 0.675272 3_4:-64732460 Msa0514070:CDS
ACAAACATACCCGCAATCGG+AGG 0.683927 3_4:+64729668 None:intergenic
ATCTACAGGTTTCGGCAACG+AGG 0.691287 3_4:-64729768 Msa0514070:intron
ATGTCCGTGATCCCTCATGG+TGG 0.691434 3_4:-64732408 Msa0514070:CDS
AAATCAACACTGTCTTCACA+CGG 0.691553 3_4:+64733057 None:intergenic
ACAAACATACCCGTAAGAGG+GGG 0.722614 3_4:+64732589 None:intergenic
ACTCTGAGCAGCTTCCCTGG+TGG 0.730878 3_4:+64729424 None:intergenic
GTAGTCATCTCCAGGCAGGG+AGG 0.745865 3_4:+64732565 None:intergenic
TCAACACTGTCTTCACACGG+TGG 0.749721 3_4:+64733060 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAAAATAAATTATAT+TGG + chr3_4:64732487-64732506 None:intergenic 0.0%
!!! ATTAATTTGAAATTTACTAA+AGG + chr3_4:64729519-64729538 None:intergenic 10.0%
!! TTCAATAGTATCTAATAAAA+AGG + chr3_4:64731177-64731196 None:intergenic 15.0%
!!! ATTTGAGATAATAGAAAAAC+AGG + chr3_4:64729411-64729430 None:intergenic 20.0%
!! TATTAATGTCATTGTAACTT+GGG + chr3_4:64730505-64730524 None:intergenic 20.0%
!! TTATTAATGTCATTGTAACT+TGG + chr3_4:64730506-64730525 None:intergenic 20.0%
!!! ACCAAATTTGTTTATTCATT+GGG + chr3_4:64730634-64730653 None:intergenic 20.0%
!!! CTTTTATGTTGAAATACAAT+AGG + chr3_4:64731205-64731224 None:intergenic 20.0%
!! CTATTGTATTTCAACATAAA+AGG - chr3_4:64731203-64731222 Msa0514070:intron 20.0%
!!! AGTTATTTCACATAATCAAT+CGG + chr3_4:64732464-64732483 None:intergenic 20.0%
!!! TATATTTAGAGCAGTTAATA+TGG - chr3_4:64732501-64732520 Msa0514070:CDS 20.0%
!!! ATATTTAGAGCAGTTAATAT+GGG - chr3_4:64732502-64732521 Msa0514070:CDS 20.0%
!! ATATAATCAATACGAAAAAG+TGG + chr3_4:64732668-64732687 None:intergenic 20.0%
! CAATTTAATCAACAAGTTTG+AGG - chr3_4:64729323-64729342 Msa0514070:three_prime_UTR 25.0%
! ATAATAGAAAAACAGGAAAG+CGG + chr3_4:64729404-64729423 None:intergenic 25.0%
! AAAATATGTTGTCTGATATG+CGG + chr3_4:64729632-64729651 None:intergenic 25.0%
! TCCCAATGAATAAACAAATT+TGG - chr3_4:64730630-64730649 Msa0514070:intron 25.0%
!! CACCAAATTTGTTTATTCAT+TGG + chr3_4:64730635-64730654 None:intergenic 25.0%
! CAATGAATAAACAAATTTGG+TGG - chr3_4:64730633-64730652 Msa0514070:intron 25.0%
! ACGTTTGATTGAATTTGATT+TGG + chr3_4:64730698-64730717 None:intergenic 25.0%
! CAATTATTACCAACATCATT+AGG - chr3_4:64730783-64730802 Msa0514070:intron 25.0%
! AATTGTTTACCTAATGATGT+TGG + chr3_4:64730795-64730814 None:intergenic 25.0%
! AAAGTCAATGTATTCGAAAT+TGG + chr3_4:64730970-64730989 None:intergenic 25.0%
! TCTTTCTTTCTTTATAATGC+CGG + chr3_4:64731656-64731675 None:intergenic 25.0%
! GCATTATAAAGAAAGAAAGA+TGG - chr3_4:64731656-64731675 Msa0514070:intron 25.0%
! AAGAAAGAAAGATGGAAAAT+AGG - chr3_4:64731664-64731683 Msa0514070:intron 25.0%
! TTCCAAAAAATTGTTCTCTT+GGG + chr3_4:64731752-64731771 None:intergenic 25.0%
! TTTCCAAAAAATTGTTCTCT+TGG + chr3_4:64731753-64731772 None:intergenic 25.0%
!! TTGGAAAACTTTTCCAATAA+AGG - chr3_4:64731766-64731785 Msa0514070:intron 25.0%
! TTCTACAAAAGTAGTTTGAT+GGG + chr3_4:64731919-64731938 None:intergenic 25.0%
! TTTCTACAAAAGTAGTTTGA+TGG + chr3_4:64731920-64731939 None:intergenic 25.0%
!!! TTTTCAAGTTTAAAGAGGAT+GGG + chr3_4:64732068-64732087 None:intergenic 25.0%
!!! TTTTGAAAAGGCTTATGATT+TGG + chr3_4:64732338-64732357 None:intergenic 25.0%
! TGAAGAATGTTTGATTCTTA+AGG + chr3_4:64732365-64732384 None:intergenic 25.0%
! ATAAATAGTAGCCTATACTT+AGG + chr3_4:64733032-64733051 None:intergenic 25.0%
! AAGCTTTTCTTATCTTCGAT+CGG + chr3_4:64729268-64729287 None:intergenic 30.0%
!!! TGCTTTTGTTTTCTACAGTA+AGG - chr3_4:64729371-64729390 Msa0514070:CDS 30.0%
TAATAGAAAAACAGGAAAGC+GGG + chr3_4:64729403-64729422 None:intergenic 30.0%
AACATATGTTGTCTGATATG+CGG + chr3_4:64729548-64729567 None:intergenic 30.0%
! AACAGACTTCTTTTTGTCAT+CGG + chr3_4:64729826-64729845 None:intergenic 30.0%
TTTCTATAGGTTGTGTCTTT+GGG + chr3_4:64730086-64730105 None:intergenic 30.0%
! TTTTCTATAGGTTGTGTCTT+TGG + chr3_4:64730087-64730106 None:intergenic 30.0%
!! AGACATCGACTATTTTCTAT+AGG + chr3_4:64730099-64730118 None:intergenic 30.0%
GAAAGGTTTGTGTATGATTT+GGG + chr3_4:64730574-64730593 None:intergenic 30.0%
AGAAAGGTTTGTGTATGATT+TGG + chr3_4:64730575-64730594 None:intergenic 30.0%
! ATGAATAAAAAGGTGCAGAA+AGG + chr3_4:64730591-64730610 None:intergenic 30.0%
TGGAGGGAATATGAATAAAA+AGG + chr3_4:64730601-64730620 None:intergenic 30.0%
TGTTTATTCATTGGGAATGT+TGG + chr3_4:64730626-64730645 None:intergenic 30.0%
!! TTTGGATGAATTTGATGATG+TGG + chr3_4:64730680-64730699 None:intergenic 30.0%
!! GTAATAATTGCGTTTGTTGT+GGG + chr3_4:64730773-64730792 None:intergenic 30.0%
CAATGTATTCGAAATTGGAA+GGG + chr3_4:64730965-64730984 None:intergenic 30.0%
TCAATGTATTCGAAATTGGA+AGG + chr3_4:64730966-64730985 None:intergenic 30.0%
! AATCTTTTAACGGAGTTGTT+AGG + chr3_4:64731070-64731089 None:intergenic 30.0%
! GTGGGAAAACAATCTTTTAA+CGG + chr3_4:64731080-64731099 None:intergenic 30.0%
GAAAGATATGGTGTAAAGAT+GGG + chr3_4:64731410-64731429 None:intergenic 30.0%
AATGTTCTAGTGGAAAGATA+TGG + chr3_4:64731422-64731441 None:intergenic 30.0%
! AAGATAATGAAGCTCTTTTG+AGG + chr3_4:64731445-64731464 None:intergenic 30.0%
GGAAATAGATATCTTAGTCT+TGG + chr3_4:64731730-64731749 None:intergenic 30.0%
TCCAAAAAATTGTTCTCTTG+GGG + chr3_4:64731751-64731770 None:intergenic 30.0%
! AGTTTTCCGTTCATGTATTT+GGG + chr3_4:64731835-64731854 None:intergenic 30.0%
! TAGTTTTCCGTTCATGTATT+TGG + chr3_4:64731836-64731855 None:intergenic 30.0%
!!! AATTTTTTGAATTGTGCGCA+AGG + chr3_4:64731859-64731878 None:intergenic 30.0%
TCTACAAAAGTAGTTTGATG+GGG + chr3_4:64731918-64731937 None:intergenic 30.0%
!!! GTTTTCAAGTTTAAAGAGGA+TGG + chr3_4:64732069-64732088 None:intergenic 30.0%
!!! CAAGGTTTTCAAGTTTAAAG+AGG + chr3_4:64732073-64732092 None:intergenic 30.0%
CATTAAACCACTAAAACCTT+CGG - chr3_4:64732120-64732139 Msa0514070:intron 30.0%
GGGGATATTAATATTCAAAG+AGG + chr3_4:64732193-64732212 None:intergenic 30.0%
!! TCTTAAGGTGGATTTTGAAA+AGG + chr3_4:64732350-64732369 None:intergenic 30.0%
AGAATGTTTGATTCTTAAGG+TGG + chr3_4:64732362-64732381 None:intergenic 30.0%
!!! TTTTTTGAAAGGTAGGAACT+TGG + chr3_4:64732440-64732459 None:intergenic 30.0%
!!! AATCAATCGGCTTTTTTGAA+AGG + chr3_4:64732451-64732470 None:intergenic 30.0%
!! ATTCTTCTTGTTGTTGTCAT+CGG + chr3_4:64732762-64732781 None:intergenic 30.0%
! CAACAAGAAGAATTCTTTTC+AGG - chr3_4:64732769-64732788 Msa0514070:intron 30.0%
AAAGTTAACAAAGCCAAAAC+GGG + chr3_4:64732912-64732931 None:intergenic 30.0%
CAAAGTTAACAAAGCCAAAA+CGG + chr3_4:64732913-64732932 None:intergenic 30.0%
ATTTCGTACTTAGAGTTGAA+TGG - chr3_4:64732990-64733009 Msa0514070:intron 30.0%
AAACTCAACGTAAACAACTA+TGG + chr3_4:64733147-64733166 None:intergenic 30.0%
GATCGAAGATAAGAAAAGCT+TGG - chr3_4:64729267-64729286 Msa0514070:three_prime_UTR 35.0%
AAATCAACACTGTCTTCACA+CGG + chr3_4:64729303-64729322 None:intergenic 35.0%
GAAAACAAAAGCAGAAGGTT+TGG + chr3_4:64729364-64729383 None:intergenic 35.0%
CTGTAGAAAACAAAAGCAGA+AGG + chr3_4:64729369-64729388 None:intergenic 35.0%
!!! CGACGACGTTTTTTATCAAA+AGG - chr3_4:64729731-64729750 Msa0514070:CDS 35.0%
TGACAAAAAGAAGTCTGTTC+TGG - chr3_4:64729827-64729846 Msa0514070:intron 35.0%
AAAAAGAAGTCTGTTCTGGT+AGG - chr3_4:64729831-64729850 Msa0514070:intron 35.0%
AAAAGAAGTCTGTTCTGGTA+GGG - chr3_4:64729832-64729851 Msa0514070:intron 35.0%
GTTGTGTTTGCTTGTATTTG+AGG + chr3_4:64730126-64730145 None:intergenic 35.0%
!! GAATTTTGGTGGTTCGAAAT+TGG + chr3_4:64730180-64730199 None:intergenic 35.0%
CACTCATAAAACATACACGT+CGG - chr3_4:64730417-64730436 Msa0514070:intron 35.0%
GAAGAGATGCAAAGAAGATT+CGG - chr3_4:64730740-64730759 Msa0514070:intron 35.0%
! GGTAATAATTGCGTTTGTTG+TGG + chr3_4:64730774-64730793 None:intergenic 35.0%
! CGCGTGTTAATTTGGAAAAA+CGG + chr3_4:64730818-64730837 None:intergenic 35.0%
AATCTCATCGCGTGTTAATT+TGG + chr3_4:64730826-64730845 None:intergenic 35.0%
! GGAGAATGATCACTTCTTTT+CGG + chr3_4:64730994-64731013 None:intergenic 35.0%
! GAGAAGGACTTTATTTGTGT+GGG + chr3_4:64731098-64731117 None:intergenic 35.0%
! ATGGATCTAGTACAAGCTTT+TGG + chr3_4:64731253-64731272 None:intergenic 35.0%
GGAAAGATATGGTGTAAAGA+TGG + chr3_4:64731411-64731430 None:intergenic 35.0%
!! TCTTTTGAGGAATGTTCTAG+TGG + chr3_4:64731432-64731451 None:intergenic 35.0%
ATTTGAGTCTTCTTGCGAAA+TGG + chr3_4:64731484-64731503 None:intergenic 35.0%
! AATTAATTGGGTGAGTTGGA+GGG + chr3_4:64731564-64731583 None:intergenic 35.0%
! AAATTAATTGGGTGAGTTGG+AGG + chr3_4:64731565-64731584 None:intergenic 35.0%
GGAAAATTAATTGGGTGAGT+TGG + chr3_4:64731568-64731587 None:intergenic 35.0%
AGGGGGAAGGAAAATTAATT+GGG + chr3_4:64731576-64731595 None:intergenic 35.0%
AATCCAATGAGAGTTCCTTT+GGG + chr3_4:64731608-64731627 None:intergenic 35.0%
AATAGGAATCGCATTCAAGA+CGG - chr3_4:64731681-64731700 Msa0514070:intron 35.0%
!!! TCCCCAAGAGAACAATTTTT+TGG - chr3_4:64731747-64731766 Msa0514070:intron 35.0%
GTAGAAATTAATCTTCAGCC+TGG - chr3_4:64731933-64731952 Msa0514070:intron 35.0%
!!! TTTGCTAAGGGGTTTTGAAT+TGG + chr3_4:64731962-64731981 None:intergenic 35.0%
! AGATAATTTGTGGACCTTGA+AGG + chr3_4:64731986-64732005 None:intergenic 35.0%
TAGTGGTTTAATGTCCAATG+CGG + chr3_4:64732113-64732132 None:intergenic 35.0%
TGAATATTAATATCCCCCGT+TGG - chr3_4:64732196-64732215 Msa0514070:intron 35.0%
AGTATGTCTATCCTTGTGAA+TGG + chr3_4:64732226-64732245 None:intergenic 35.0%
TAAATGGATAGAGTGGATGA+AGG + chr3_4:64732266-64732285 None:intergenic 35.0%
TTTGTGCTAAATGGATAGAG+TGG + chr3_4:64732273-64732292 None:intergenic 35.0%
!! GCTTTTTGGTGTATATGATG+CGG + chr3_4:64732306-64732325 None:intergenic 35.0%
!! GCTTATGATTTGGTAGATTG+GGG + chr3_4:64732328-64732347 None:intergenic 35.0%
!! GGCTTATGATTTGGTAGATT+GGG + chr3_4:64732329-64732348 None:intergenic 35.0%
!! AGGCTTATGATTTGGTAGAT+TGG + chr3_4:64732330-64732349 None:intergenic 35.0%
!!! AATCGGCTTTTTTGAAAGGT+AGG + chr3_4:64732447-64732466 None:intergenic 35.0%
TATTGTCTCTGTGTATCTAC+AGG - chr3_4:64732575-64732594 Msa0514070:CDS 35.0%
TGATTATATACCTCCGATTG+CGG - chr3_4:64732679-64732698 Msa0514070:intron 35.0%
!! CAAGAAGAATTCTTTTCAGG+TGG - chr3_4:64732772-64732791 Msa0514070:intron 35.0%
TAATGACATGACCAAAAGAC+TGG + chr3_4:64732850-64732869 None:intergenic 35.0%
! AGTGCTATTGAAAGAGTCAA+TGG - chr3_4:64732953-64732972 Msa0514070:intron 35.0%
! GTGCTATTGAAAGAGTCAAT+GGG - chr3_4:64732954-64732973 Msa0514070:intron 35.0%
CAACTCTAAGTACGAAATTG+TGG + chr3_4:64732988-64733007 None:intergenic 35.0%
! CTATACTTAGGTTGTTGTTG+GGG + chr3_4:64733020-64733039 None:intergenic 35.0%
! CCTATACTTAGGTTGTTGTT+GGG + chr3_4:64733021-64733040 None:intergenic 35.0%
! TGAGTATACATTTTCGCTAC+TGG - chr3_4:64733067-64733086 Msa0514070:exon 35.0%
TGACTATAAACCCCCTCTTA+CGG - chr3_4:64729758-64729777 Msa0514070:CDS 40.0%
TACAAACATACCCGTAAGAG+GGG + chr3_4:64729772-64729791 None:intergenic 40.0%
GTACAAACATACCCGTAAGA+GGG + chr3_4:64729773-64729792 None:intergenic 40.0%
AAAGAAGTCTGTTCTGGTAG+GGG - chr3_4:64729833-64729852 Msa0514070:intron 40.0%
AACCCTGATCTCCTTAAGTT+CGG - chr3_4:64729867-64729886 Msa0514070:intron 40.0%
AATACCCATGTCTTTGTGGA+CGG + chr3_4:64729904-64729923 None:intergenic 40.0%
CCACAAAGACATGGGTATTA+CGG - chr3_4:64729905-64729924 Msa0514070:intron 40.0%
!!! TCTTTTGAGGCAGTTTTGCT+GGG + chr3_4:64730227-64730246 None:intergenic 40.0%
!!! TGTTTTTTGAGGAAGGTCTG+GGG + chr3_4:64730250-64730269 None:intergenic 40.0%
!!! CTGTTTTTTGAGGAAGGTCT+GGG + chr3_4:64730251-64730270 None:intergenic 40.0%
!!! TTGTGCAAGGCTGTTTTTTG+AGG + chr3_4:64730261-64730280 None:intergenic 40.0%
! GTATGTTTTATGAGTGGAGC+TGG + chr3_4:64730413-64730432 None:intergenic 40.0%
! CGACGTGTATGTTTTATGAG+TGG + chr3_4:64730419-64730438 None:intergenic 40.0%
TGTAACTTGGGAAGAGATTG+TGG + chr3_4:64730493-64730512 None:intergenic 40.0%
! TTTGTGTATGATTTGGGAGG+CGG + chr3_4:64730568-64730587 None:intergenic 40.0%
! AGGTTTGTGTATGATTTGGG+AGG + chr3_4:64730571-64730590 None:intergenic 40.0%
ATTCATTGGGAATGTTGGAG+TGG + chr3_4:64730621-64730640 None:intergenic 40.0%
TTCCGTCAAATTTGGAAGAC+CGG + chr3_4:64730897-64730916 None:intergenic 40.0%
GAGTTGTTAGGAGATTTGGA+CGG + chr3_4:64731058-64731077 None:intergenic 40.0%
AACGGAGTTGTTAGGAGATT+TGG + chr3_4:64731062-64731081 None:intergenic 40.0%
! GGAGAAGGACTTTATTTGTG+TGG + chr3_4:64731099-64731118 None:intergenic 40.0%
!! GGTGGGTTTTTAATTGGAGA+AGG + chr3_4:64731114-64731133 None:intergenic 40.0%
CTATGATTCATGAGATGTGG+AGG + chr3_4:64731154-64731173 None:intergenic 40.0%
AGGCTATGATTCATGAGATG+TGG + chr3_4:64731157-64731176 None:intergenic 40.0%
!! TAGTACAAGCTTTTGGAGAG+TGG + chr3_4:64731246-64731265 None:intergenic 40.0%
!! AGATTGGTTTAATGAGGAGG+TGG + chr3_4:64731291-64731310 None:intergenic 40.0%
!! ATTTGGTGGTGCTCTCTAAA+GGG + chr3_4:64731328-64731347 None:intergenic 40.0%
TGTAAAGATGGGTGAGTTGT+TGG + chr3_4:64731399-64731418 None:intergenic 40.0%
AGGAGTTAGGGATGTTTGTA+GGG + chr3_4:64731510-64731529 None:intergenic 40.0%
TAGGAGTTAGGGATGTTTGT+AGG + chr3_4:64731511-64731530 None:intergenic 40.0%
GAGGGGGAAGGAAAATTAAT+TGG + chr3_4:64731577-64731596 None:intergenic 40.0%
ATCCAATGAGAGTTCCTTTG+GGG + chr3_4:64731607-64731626 None:intergenic 40.0%
GAATCCAATGAGAGTTCCTT+TGG + chr3_4:64731609-64731628 None:intergenic 40.0%
!!! ATCTTTTTTGCCACACAAGC+CGG - chr3_4:64731634-64731653 Msa0514070:intron 40.0%
TCGCATTCAAGACGGAATTA+AGG - chr3_4:64731689-64731708 Msa0514070:intron 40.0%
CATTCAAGACGGAATTAAGG+AGG - chr3_4:64731692-64731711 Msa0514070:intron 40.0%
TTCCAATAAAGGATCCCAAG+TGG - chr3_4:64731777-64731796 Msa0514070:intron 40.0%
TACCACTTGGGATCCTTTAT+TGG + chr3_4:64731782-64731801 None:intergenic 40.0%
CACGTCATTTCCATAATCTC+CGG - chr3_4:64731880-64731899 Msa0514070:intron 40.0%
TAGTTTGATGGGGATTGATG+TGG + chr3_4:64731908-64731927 None:intergenic 40.0%
GAAATTAATCTTCAGCCTGG+AGG - chr3_4:64731936-64731955 Msa0514070:intron 40.0%
AGGCAACGGTAGATAATTTG+TGG + chr3_4:64731996-64732015 None:intergenic 40.0%
TGATACTATTTGTGTGGGGA+AGG + chr3_4:64732016-64732035 None:intergenic 40.0%
CCGATGATACTATTTGTGTG+GGG + chr3_4:64732020-64732039 None:intergenic 40.0%
CCCCACACAAATAGTATCAT+CGG - chr3_4:64732017-64732036 Msa0514070:intron 40.0%
GCCGATGATACTATTTGTGT+GGG + chr3_4:64732021-64732040 None:intergenic 40.0%
TGCCGATGATACTATTTGTG+TGG + chr3_4:64732022-64732041 None:intergenic 40.0%
CAAGTTTAAAGAGGATGGGA+AGG + chr3_4:64732064-64732083 None:intergenic 40.0%
GTGCATCTCAATCTCTTTCA+AGG + chr3_4:64732091-64732110 None:intergenic 40.0%
! ACCTTTCCTTTTCCTTTTGG+TGG + chr3_4:64732146-64732165 None:intergenic 40.0%
! AGCACCTTTCCTTTTCCTTT+TGG + chr3_4:64732149-64732168 None:intergenic 40.0%
!! GAGTGGGTTTTTGTGCTAAA+TGG + chr3_4:64732282-64732301 None:intergenic 40.0%
! TTTGGTAGATTGGGGCTTTT+TGG + chr3_4:64732320-64732339 None:intergenic 40.0%
TTTGAAAGGTAGGAACTTGG+CGG + chr3_4:64732437-64732456 None:intergenic 40.0%
CTCTGTGTATCTACAGGTTT+CGG - chr3_4:64732581-64732600 Msa0514070:CDS 40.0%
ACATTATGACCAGAGCTTCT+TGG + chr3_4:64732638-64732657 None:intergenic 40.0%
GATTATATACCTCCGATTGC+GGG - chr3_4:64732680-64732699 Msa0514070:intron 40.0%
TTTGTGGAAGAGATGACTAC+TGG - chr3_4:64732731-64732750 Msa0514070:intron 40.0%
TTGTGGAAGAGATGACTACT+GGG - chr3_4:64732732-64732751 Msa0514070:intron 40.0%
!!! AATTCTTTTCAGGTGGTCGT+AGG - chr3_4:64732779-64732798 Msa0514070:intron 40.0%
GGAAAAGCTGAAGCAAATCA+GGG + chr3_4:64732829-64732848 None:intergenic 40.0%
TGGAAAAGCTGAAGCAAATC+AGG + chr3_4:64732830-64732849 None:intergenic 40.0%
! CTTCAGCTTTTCCAGTCTTT+TGG - chr3_4:64732836-64732855 Msa0514070:intron 40.0%
GTCTTGATCAACAGCAACAT+CGG + chr3_4:64732876-64732895 None:intergenic 40.0%
CTTTGTTAACTTTGCCACCA+GGG - chr3_4:64732919-64732938 Msa0514070:intron 40.0%
CCCAACAACAACCTAAGTAT+AGG - chr3_4:64733018-64733037 Msa0514070:CDS 40.0%
! GCCTATACTTAGGTTGTTGT+TGG + chr3_4:64733022-64733041 None:intergenic 40.0%
GACTATAAACCCCCTCTTAC+GGG - chr3_4:64729759-64729778 Msa0514070:CDS 45.0%
ACAAACATACCCGTAAGAGG+GGG + chr3_4:64729771-64729790 None:intergenic 45.0%
GGTACAAACATACCCGTAAG+AGG + chr3_4:64729774-64729793 None:intergenic 45.0%
! CTTTTTGTCATCGGATGACC+CGG + chr3_4:64729817-64729836 None:intergenic 45.0%
ACCCTGATCTCCTTAAGTTC+GGG - chr3_4:64729868-64729887 Msa0514070:intron 45.0%
TATGCCGTCCACAAAGACAT+GGG - chr3_4:64729897-64729916 Msa0514070:intron 45.0%
CCGTAATACCCATGTCTTTG+TGG + chr3_4:64729908-64729927 None:intergenic 45.0%
TCGAATGCAAACCACCATGA+GGG + chr3_4:64729963-64729982 None:intergenic 45.0%
GCAACAAAGATGCCGCATAT+AGG - chr3_4:64730050-64730069 Msa0514070:intron 45.0%
GGTGATGTAACGCCTATATG+CGG + chr3_4:64730065-64730084 None:intergenic 45.0%
AAGCAAACACAACACCTCCA+AGG - chr3_4:64730133-64730152 Msa0514070:intron 45.0%
! GCTATGGGGTTGAATTTTGG+TGG + chr3_4:64730191-64730210 None:intergenic 45.0%
! CGTGCTATGGGGTTGAATTT+TGG + chr3_4:64730194-64730213 None:intergenic 45.0%
!!! GTCTTTTGAGGCAGTTTTGC+TGG + chr3_4:64730228-64730247 None:intergenic 45.0%
!!! GCTGTTTTTTGAGGAAGGTC+TGG + chr3_4:64730252-64730271 None:intergenic 45.0%
!!! GCAAGGCTGTTTTTTGAGGA+AGG + chr3_4:64730257-64730276 None:intergenic 45.0%
!!! CTTGCTGTTTTCTGGTCTAG+CGG + chr3_4:64730347-64730366 None:intergenic 45.0%
CTAGACCAGAAAACAGCAAG+AGG - chr3_4:64730347-64730366 Msa0514070:intron 45.0%
AAACATACACGTCGGAGTTG+TGG - chr3_4:64730425-64730444 Msa0514070:intron 45.0%
! TGAAGGTTATGACTTGGAGG+TGG + chr3_4:64730464-64730483 None:intergenic 45.0%
! AGGTGAAGGTTATGACTTGG+AGG + chr3_4:64730467-64730486 None:intergenic 45.0%
AGGAGGTGAAGGTTATGACT+TGG + chr3_4:64730470-64730489 None:intergenic 45.0%
AACTTGGGAAGAGATTGTGG+AGG + chr3_4:64730490-64730509 None:intergenic 45.0%
! TTTGGGTGTTATCGAAAGCG+AGG + chr3_4:64730542-64730561 None:intergenic 45.0%
! TTGTGTATGATTTGGGAGGC+GGG + chr3_4:64730567-64730586 None:intergenic 45.0%
ATTGGGAATGTTGGAGTGGA+GGG + chr3_4:64730617-64730636 None:intergenic 45.0%
TCCTTGCGAAGTCACAATGT+AGG - chr3_4:64730718-64730737 Msa0514070:intron 45.0%
TCCTACATTGTGACTTCGCA+AGG + chr3_4:64730722-64730741 None:intergenic 45.0%
!! TTGCGTTTGTTGTGGGAAGT+TGG + chr3_4:64730766-64730785 None:intergenic 45.0%
!! GGTGAGTGCTTTTGTTTGGA+AGG + chr3_4:64730862-64730881 None:intergenic 45.0%
! CCAAGGTGAGTGCTTTTGTT+TGG + chr3_4:64730866-64730885 None:intergenic 45.0%
!! CCAAACAAAAGCACTCACCT+TGG - chr3_4:64730863-64730882 Msa0514070:intron 45.0%
!! ACAAAAGCACTCACCTTGGA+AGG - chr3_4:64730867-64730886 Msa0514070:intron 45.0%
CTCCGGTCTTCCAAATTTGA+CGG - chr3_4:64730892-64730911 Msa0514070:intron 45.0%
GGAGGTTGTTCCGTCAAATT+TGG + chr3_4:64730905-64730924 None:intergenic 45.0%
! ATTGGAAGGGAGAGAGGTTT+TGG + chr3_4:64730952-64730971 None:intergenic 45.0%
TTCGAAATTGGAAGGGAGAG+AGG + chr3_4:64730958-64730977 None:intergenic 45.0%
AGATTCTTGGAGGTGGAAGT+TGG + chr3_4:64731015-64731034 None:intergenic 45.0%
AGGTTGAAGATTCTTGGAGG+TGG + chr3_4:64731022-64731041 None:intergenic 45.0%
CTGAGGTTGAAGATTCTTGG+AGG + chr3_4:64731025-64731044 None:intergenic 45.0%
GGACTGAGGTTGAAGATTCT+TGG + chr3_4:64731028-64731047 None:intergenic 45.0%
AGGAGATTTGGACGGTTTGT+GGG + chr3_4:64731050-64731069 None:intergenic 45.0%
TAGGAGATTTGGACGGTTTG+TGG + chr3_4:64731051-64731070 None:intergenic 45.0%
!! GAAGGGGGTGGGTTTTTAAT+TGG + chr3_4:64731120-64731139 None:intergenic 45.0%
TGGAGGCCAAATTCAAGGAA+GGG + chr3_4:64731137-64731156 None:intergenic 45.0%
AGATGTGGAGGCCAAATTCA+AGG + chr3_4:64731142-64731161 None:intergenic 45.0%
!! GGCAGATTGGTTTAATGAGG+AGG + chr3_4:64731294-64731313 None:intergenic 45.0%
!! TTTGGTGGTGCTCTCTAAAG+GGG + chr3_4:64731327-64731346 None:intergenic 45.0%
!! GATTTGGTGGTGCTCTCTAA+AGG + chr3_4:64731329-64731348 None:intergenic 45.0%
!! ATCGAGGTGGTGGAAAGATT+TGG + chr3_4:64731345-64731364 None:intergenic 45.0%
!! TGGAGGACATTGTCGATTTG+TGG + chr3_4:64731379-64731398 None:intergenic 45.0%
AAAGATGGGTGAGTTGTTGG+AGG + chr3_4:64731396-64731415 None:intergenic 45.0%
TGAGTCTTCTTGCGAAATGG+AGG + chr3_4:64731481-64731500 None:intergenic 45.0%
AGTTGGAGGTCTAGGAGTTA+GGG + chr3_4:64731522-64731541 None:intergenic 45.0%
AAGTTGGAGGTCTAGGAGTT+AGG + chr3_4:64731523-64731542 None:intergenic 45.0%
TGTCAACCTAGAGAAGTTGG+AGG + chr3_4:64731536-64731555 None:intergenic 45.0%
GTGTGTCAACCTAGAGAAGT+TGG + chr3_4:64731539-64731558 None:intergenic 45.0%
!! CTTTATAATGCCGGCTTGTG+TGG + chr3_4:64731647-64731666 None:intergenic 45.0%
GTTCATGTATTTGGGCTTGC+CGG + chr3_4:64731827-64731846 None:intergenic 45.0%
GGCAAGCCCAAATACATGAA+CGG - chr3_4:64731826-64731845 Msa0514070:intron 45.0%
ACCTTGAAGGCTTTGCTAAG+GGG + chr3_4:64731973-64731992 None:intergenic 45.0%
GACCTTGAAGGCTTTGCTAA+GGG + chr3_4:64731974-64731993 None:intergenic 45.0%
TATTTGTGTGGGGAAGGCAA+CGG + chr3_4:64732010-64732029 None:intergenic 45.0%
TAAAACCTTCGGCCACCAAA+AGG - chr3_4:64732131-64732150 Msa0514070:intron 45.0%
GCCACCAAAAGGAAAAGGAA+AGG - chr3_4:64732142-64732161 Msa0514070:intron 45.0%
!! AGGAAAAGGAAAGGTGCTAG+AGG - chr3_4:64732151-64732170 Msa0514070:intron 45.0%
TTGTGAATGGAAGTCCAACG+GGG + chr3_4:64732213-64732232 None:intergenic 45.0%
CTTGTGAATGGAAGTCCAAC+GGG + chr3_4:64732214-64732233 None:intergenic 45.0%
CCTTGTGAATGGAAGTCCAA+CGG + chr3_4:64732215-64732234 None:intergenic 45.0%
ATGAAGGCTTATGTGTGTGG+AGG + chr3_4:64732250-64732269 None:intergenic 45.0%
TGGATGAAGGCTTATGTGTG+TGG + chr3_4:64732253-64732272 None:intergenic 45.0%
GTGTATATGATGCGGAGAGT+GGG + chr3_4:64732298-64732317 None:intergenic 45.0%
GGTACAAACATACCCGCAAT+CGG + chr3_4:64732695-64732714 None:intergenic 45.0%
GTTTGTACCTCCATACCTGA+AGG - chr3_4:64732706-64732725 Msa0514070:intron 45.0%
ACAAAAGCCTTCAGGTATGG+AGG + chr3_4:64732716-64732735 None:intergenic 45.0%
! TCCATACCTGAAGGCTTTTG+TGG - chr3_4:64732715-64732734 Msa0514070:intron 45.0%
TCCACAAAAGCCTTCAGGTA+TGG + chr3_4:64732719-64732738 None:intergenic 45.0%
TCTCTTCCACAAAAGCCTTC+AGG + chr3_4:64732724-64732743 None:intergenic 45.0%
! GTTGCTGTTGATCAAGACTC+TGG - chr3_4:64732878-64732897 Msa0514070:intron 45.0%
! GCTTTGTTAACTTTGCCACC+AGG - chr3_4:64732918-64732937 Msa0514070:intron 45.0%
! TACTTAGGTTGTTGTTGGGG+AGG + chr3_4:64733017-64733036 None:intergenic 45.0%
!!! TTTTTTATTTTATTTTAGTT+AGG - chr3_4:64729440-64729459 Msa0514070:CDS 5.0%
!!! TTTTTATTTTATTTTAGTTA+GGG - chr3_4:64729441-64729460 Msa0514070:CDS 5.0%
!! CAAAAAATAAAAATAAAAAT+TGG + chr3_4:64730025-64730044 None:intergenic 5.0%
!!! TTTATTTTTATTTTTTGAAT+CGG - chr3_4:64730028-64730047 Msa0514070:intron 5.0%
TCAACACTGTCTTCACACGG+TGG + chr3_4:64729300-64729319 None:intergenic 50.0%
TATGTTTGTACCTCCCTGCC+TGG - chr3_4:64729782-64729801 Msa0514070:intron 50.0%
CCCCGAACTTAAGGAGATCA+GGG + chr3_4:64729872-64729891 None:intergenic 50.0%
CCCTGATCTCCTTAAGTTCG+GGG - chr3_4:64729869-64729888 Msa0514070:intron 50.0%
TCCCCGAACTTAAGGAGATC+AGG + chr3_4:64729873-64729892 None:intergenic 50.0%
CATAGCTGTCCCCGAACTTA+AGG + chr3_4:64729881-64729900 None:intergenic 50.0%
CTATGCCGTCCACAAAGACA+TGG - chr3_4:64729896-64729915 Msa0514070:intron 50.0%
CAAACCACCATGAGGGATCA+CGG + chr3_4:64729956-64729975 None:intergenic 50.0%
GTCGAATGCAAACCACCATG+AGG + chr3_4:64729964-64729983 None:intergenic 50.0%
ACAACACAGCAACAGCCAAC+AGG - chr3_4:64730277-64730296 Msa0514070:intron 50.0%
!! GTTTTCTGGTCTAGCGGTAC+AGG + chr3_4:64730341-64730360 None:intergenic 50.0%
GACCAGAAAACAGCAAGAGG+AGG - chr3_4:64730350-64730369 Msa0514070:intron 50.0%
!!! TGCCTCCTCTTGCTGTTTTC+TGG + chr3_4:64730355-64730374 None:intergenic 50.0%
AGAGATTGTGGAGGAGGTGA+AGG + chr3_4:64730481-64730500 None:intergenic 50.0%
TTGGGAAGAGATTGTGGAGG+AGG + chr3_4:64730487-64730506 None:intergenic 50.0%
GATTTGGGAGGCGGGAATTT+GGG + chr3_4:64730559-64730578 None:intergenic 50.0%
! TGATTTGGGAGGCGGGAATT+TGG + chr3_4:64730560-64730579 None:intergenic 50.0%
CATTGGGAATGTTGGAGTGG+AGG + chr3_4:64730618-64730637 None:intergenic 50.0%
CACGCGATGAGATTCGATCA+AGG - chr3_4:64730832-64730851 Msa0514070:intron 50.0%
GGAGATTTGGACGGTTTGTG+GGG + chr3_4:64731049-64731068 None:intergenic 50.0%
CCAAATTCAAGGAAGGGGGT+GGG + chr3_4:64731131-64731150 None:intergenic 50.0%
GAGGCCAAATTCAAGGAAGG+GGG + chr3_4:64731135-64731154 None:intergenic 50.0%
GGAGGCCAAATTCAAGGAAG+GGG + chr3_4:64731136-64731155 None:intergenic 50.0%
GTGGAGGCCAAATTCAAGGA+AGG + chr3_4:64731138-64731157 None:intergenic 50.0%
!! TTTTGGAGAGTGGCATGGAG+AGG + chr3_4:64731236-64731255 None:intergenic 50.0%
!! CAAGCTTTTGGAGAGTGGCA+TGG + chr3_4:64731241-64731260 None:intergenic 50.0%
!! GGGGGCAGATTGGTTTAATG+AGG + chr3_4:64731297-64731316 None:intergenic 50.0%
!! GAGGTGGTGGAAAGATTTGG+TGG + chr3_4:64731342-64731361 None:intergenic 50.0%
!! ACATTGTCGATTTGTGGCCG+AGG + chr3_4:64731373-64731392 None:intergenic 50.0%
TTCTTGCGAAATGGAGGTGG+AGG + chr3_4:64731475-64731494 None:intergenic 50.0%
GTCTTCTTGCGAAATGGAGG+TGG + chr3_4:64731478-64731497 None:intergenic 50.0%
CCTAGAGAAGTTGGAGGTCT+AGG + chr3_4:64731530-64731549 None:intergenic 50.0%
CCTAGACCTCCAACTTCTCT+AGG - chr3_4:64731527-64731546 Msa0514070:intron 50.0%
!! TTCCTTTGGGGTGGAATGGA+GGG + chr3_4:64731595-64731614 None:intergenic 50.0%
!! AGAGTTCCTTTGGGGTGGAA+TGG + chr3_4:64731599-64731618 None:intergenic 50.0%
! CAATGAGAGTTCCTTTGGGG+TGG + chr3_4:64731604-64731623 None:intergenic 50.0%
CACCCCAAAGGAACTCTCAT+TGG - chr3_4:64731602-64731621 Msa0514070:intron 50.0%
ATGTATTTGGGCTTGCCGGT+GGG + chr3_4:64731823-64731842 None:intergenic 50.0%
ACCCCTTAGCAAAGCCTTCA+AGG - chr3_4:64731969-64731988 Msa0514070:intron 50.0%
GGACCTTGAAGGCTTTGCTA+AGG + chr3_4:64731975-64731994 None:intergenic 50.0%
GAGATTGAGATGCACCGCAT+TGG - chr3_4:64732096-64732115 Msa0514070:intron 50.0%
!! TTGGTGGCCGAAGGTTTTAG+TGG + chr3_4:64732130-64732149 None:intergenic 50.0%
!! CTTTTCCTTTTGGTGGCCGA+AGG + chr3_4:64732139-64732158 None:intergenic 50.0%
CTTCGGCCACCAAAAGGAAA+AGG - chr3_4:64732137-64732156 Msa0514070:intron 50.0%
TGTGAATGGAAGTCCAACGG+GGG + chr3_4:64732212-64732231 None:intergenic 50.0%
CCGTTGGACTTCCATTCACA+AGG - chr3_4:64732212-64732231 Msa0514070:intron 50.0%
GGTGTATATGATGCGGAGAG+TGG + chr3_4:64732299-64732318 None:intergenic 50.0%
! AAGGTAGGAACTTGGCGGAT+GGG + chr3_4:64732432-64732451 None:intergenic 50.0%
AAAGGTAGGAACTTGGCGGA+TGG + chr3_4:64732433-64732452 None:intergenic 50.0%
ATCTACAGGTTTCGGCAACG+AGG - chr3_4:64732589-64732608 Msa0514070:CDS 50.0%
ACAAACATACCCGCAATCGG+AGG + chr3_4:64732692-64732711 None:intergenic 50.0%
CAGGGTTCCTTGTCTCGTAT+GGG + chr3_4:64732811-64732830 None:intergenic 50.0%
TCAGGGTTCCTTGTCTCGTA+TGG + chr3_4:64732812-64732831 None:intergenic 50.0%
ATGACCCGGTAGTCATCTCC+AGG + chr3_4:64729803-64729822 None:intergenic 55.0%
CATGAGGGATCACGGACATG+AGG + chr3_4:64729948-64729967 None:intergenic 55.0%
CTCATGTCCGTGATCCCTCA+TGG - chr3_4:64729946-64729965 Msa0514070:intron 55.0%
ATGTCCGTGATCCCTCATGG+TGG - chr3_4:64729949-64729968 Msa0514070:intron 55.0%
CACCTCCAAGGCTTGAGCTA+TGG - chr3_4:64730145-64730164 Msa0514070:intron 55.0%
AGCCATAGCTCAAGCCTTGG+AGG + chr3_4:64730150-64730169 None:intergenic 55.0%
CAGAGCCATAGCTCAAGCCT+TGG + chr3_4:64730153-64730172 None:intergenic 55.0%
! CAGTTTTGCTGGGCTGTTGG+AGG + chr3_4:64730217-64730236 None:intergenic 55.0%
! AGGCAGTTTTGCTGGGCTGT+TGG + chr3_4:64730220-64730239 None:intergenic 55.0%
!! GGAAGGTCTGGGGTCTTTTG+AGG + chr3_4:64730240-64730259 None:intergenic 55.0%
GGCTGTTGCTGTGTTGTGCA+AGG + chr3_4:64730274-64730293 None:intergenic 55.0%
CATGACAGTCCAGCACCTGT+TGG + chr3_4:64730295-64730314 None:intergenic 55.0%
CGGGATTGCTTAGCGCGTTA+AGG + chr3_4:64730384-64730403 None:intergenic 55.0%
TAACGCGCTAAGCAATCCCG+TGG - chr3_4:64730384-64730403 Msa0514070:intron 55.0%
ATGAGTGGAGCTGGAGTCCA+CGG + chr3_4:64730404-64730423 None:intergenic 55.0%
ACTCACCTTGGAAGGAGCTC+CGG - chr3_4:64730875-64730894 Msa0514070:intron 55.0%
AACAACCTCCTCTCCCCTAC+CGG - chr3_4:64730915-64730934 Msa0514070:intron 55.0%
!!! GGTTTTGGAGGTTACCCGTC+CGG + chr3_4:64730937-64730956 None:intergenic 55.0%
!! GGAAGGGAGAGAGGTTTTGG+AGG + chr3_4:64730949-64730968 None:intergenic 55.0%
CCCACCCCCTTCCTTGAATT+TGG - chr3_4:64731128-64731147 Msa0514070:intron 55.0%
GCCAAATTCAAGGAAGGGGG+TGG + chr3_4:64731132-64731151 None:intergenic 55.0%
! TGGTGCTCTCTAAAGGGGCA+GGG + chr3_4:64731322-64731341 None:intergenic 55.0%
CACCACCTCGATGCATTCCT+CGG - chr3_4:64731353-64731372 Msa0514070:intron 55.0%
!! TCCTTTGGGGTGGAATGGAG+GGG + chr3_4:64731594-64731613 None:intergenic 55.0%
!! GTTCCTTTGGGGTGGAATGG+AGG + chr3_4:64731596-64731615 None:intergenic 55.0%
CATGTATTTGGGCTTGCCGG+TGG + chr3_4:64731824-64731843 None:intergenic 55.0%
! TGATGTGGCGCCGGAGATTA+TGG + chr3_4:64731893-64731912 None:intergenic 55.0%
!!! GGGGTTTTGAATTGGCCTCC+AGG + chr3_4:64731954-64731973 None:intergenic 55.0%
!! GAACTTGGCGGATGGGGTTT+TGG + chr3_4:64732425-64732444 None:intergenic 55.0%
! AGGTAGGAACTTGGCGGATG+GGG + chr3_4:64732431-64732450 None:intergenic 55.0%
TTCCCTCGTCCAAGAAGCTC+TGG - chr3_4:64732626-64732645 Msa0514070:CDS 55.0%
GACCAGAGCTTCTTGGACGA+GGG + chr3_4:64732631-64732650 None:intergenic 55.0%
TGACCAGAGCTTCTTGGACG+AGG + chr3_4:64732632-64732651 None:intergenic 55.0%
GCAACCTCCCATACGAGACA+AGG - chr3_4:64732801-64732820 Msa0514070:intron 55.0%
GGTTCCTTGTCTCGTATGGG+AGG + chr3_4:64732808-64732827 None:intergenic 55.0%
! TCTGGCTGTAGTGCCCGTTT+TGG - chr3_4:64732896-64732915 Msa0514070:intron 55.0%
GTAGTCATCTCCAGGCAGGG+AGG + chr3_4:64729795-64729814 None:intergenic 60.0%
CCGGTAGTCATCTCCAGGCA+GGG + chr3_4:64729798-64729817 None:intergenic 60.0%
CCCTGCCTGGAGATGACTAC+CGG - chr3_4:64729795-64729814 Msa0514070:intron 60.0%
CCTGCCTGGAGATGACTACC+GGG - chr3_4:64729796-64729815 Msa0514070:intron 60.0%
! GCTGTTGGAGGCGTGCTATG+GGG + chr3_4:64730205-64730224 None:intergenic 60.0%
! GGCTGTTGGAGGCGTGCTAT+GGG + chr3_4:64730206-64730225 None:intergenic 60.0%
CAGCAACAGCCAACAGGTGC+TGG - chr3_4:64730283-64730302 Msa0514070:intron 60.0%
TAGCGGTACAGGCTGTCCAC+TGG + chr3_4:64730330-64730349 None:intergenic 60.0%
TGAGTGGAGCTGGAGTCCAC+GGG + chr3_4:64730403-64730422 None:intergenic 60.0%
GAAGACCGGAGCTCCTTCCA+AGG + chr3_4:64730883-64730902 None:intergenic 60.0%
TGGAGGTTACCCGTCCGGTA+GGG + chr3_4:64730932-64730951 None:intergenic 60.0%
TTGGAGGTTACCCGTCCGGT+AGG + chr3_4:64730933-64730952 None:intergenic 60.0%
TGGACGGTTTGTGGGGACTG+AGG + chr3_4:64731042-64731061 None:intergenic 60.0%
GTGGTTCGTAGCGTGGGGAA+TGG + chr3_4:64731272-64731291 None:intergenic 60.0%
AGGAGGTGGTTCGTAGCGTG+GGG + chr3_4:64731277-64731296 None:intergenic 60.0%
GAGGAGGTGGTTCGTAGCGT+GGG + chr3_4:64731278-64731297 None:intergenic 60.0%
TGAGGAGGTGGTTCGTAGCG+TGG + chr3_4:64731279-64731298 None:intergenic 60.0%
! GGTGCTCTCTAAAGGGGCAG+GGG + chr3_4:64731321-64731340 None:intergenic 60.0%
! GTGGTGCTCTCTAAAGGGGC+AGG + chr3_4:64731323-64731342 None:intergenic 60.0%
CGAGGAATGCATCGAGGTGG+TGG + chr3_4:64731355-64731374 None:intergenic 60.0%
TGTGGCCGAGGAATGCATCG+AGG + chr3_4:64731361-64731380 None:intergenic 60.0%
!! CCTTTGGGGTGGAATGGAGG+GGG + chr3_4:64731593-64731612 None:intergenic 60.0%
TCCCAAGTGGTAGCCCTAGC+CGG - chr3_4:64731790-64731809 Msa0514070:intron 60.0%
ATTTGGGCTTGCCGGTGGGT+GGG + chr3_4:64731819-64731838 None:intergenic 60.0%
TATTTGGGCTTGCCGGTGGG+TGG + chr3_4:64731820-64731839 None:intergenic 60.0%
GATGGGGATTGATGTGGCGC+CGG + chr3_4:64731902-64731921 None:intergenic 60.0%
ACTCTGAGCAGCTTCCCTGG+TGG + chr3_4:64732936-64732955 None:intergenic 60.0%
AGCACTCTGAGCAGCTTCCC+TGG + chr3_4:64732939-64732958 None:intergenic 60.0%
CCCGGTAGTCATCTCCAGGC+AGG + chr3_4:64729799-64729818 None:intergenic 65.0%
! GGGCTGTTGGAGGCGTGCTA+TGG + chr3_4:64730207-64730226 None:intergenic 65.0%
CATGACAGCAGCGCTGCCAG+TGG - chr3_4:64730311-64730330 Msa0514070:intron 65.0%
ACCTCCTCTCCCCTACCGGA+CGG - chr3_4:64730919-64730938 Msa0514070:intron 65.0%
TTACCCGTCCGGTAGGGGAG+AGG + chr3_4:64730926-64730945 None:intergenic 65.0%
GGAGGTTACCCGTCCGGTAG+GGG + chr3_4:64730931-64730950 None:intergenic 65.0%
! TCTCTAAAGGGGCAGGGGCG+GGG + chr3_4:64731316-64731335 None:intergenic 65.0%
! CTCTCTAAAGGGGCAGGGGC+GGG + chr3_4:64731317-64731336 None:intergenic 65.0%
! GCTCTCTAAAGGGGCAGGGG+CGG + chr3_4:64731318-64731337 None:intergenic 65.0%
GGCCGAGGAATGCATCGAGG+TGG + chr3_4:64731358-64731377 None:intergenic 65.0%
TGGGGTGGAATGGAGGGGGA+AGG + chr3_4:64731589-64731608 None:intergenic 65.0%
CCCCCTCCATTCCACCCCAA+AGG - chr3_4:64731590-64731609 Msa0514070:intron 65.0%
CCCGGCTAGGGCTACCACTT+GGG + chr3_4:64731794-64731813 None:intergenic 65.0%
CCCAAGTGGTAGCCCTAGCC+GGG - chr3_4:64731791-64731810 Msa0514070:intron 65.0%
ACCCGGCTAGGGCTACCACT+TGG + chr3_4:64731795-64731814 None:intergenic 65.0%
CCTCCTCTCCCCTACCGGAC+GGG - chr3_4:64730920-64730939 Msa0514070:intron 70.0%
! CTCTAAAGGGGCAGGGGCGG+GGG + chr3_4:64731315-64731334 None:intergenic 70.0%
GGTGGGTGGGAACCCGGCTA+GGG + chr3_4:64731806-64731825 None:intergenic 70.0%
CTAGCCGGGTTCCCACCCAC+CGG - chr3_4:64731805-64731824 Msa0514070:intron 70.0%
CTTGCCGGTGGGTGGGAACC+CGG + chr3_4:64731812-64731831 None:intergenic 70.0%
CCCGTCCGGTAGGGGAGAGG+AGG + chr3_4:64730923-64730942 None:intergenic 75.0%
CGGTGGGTGGGAACCCGGCT+AGG + chr3_4:64731807-64731826 None:intergenic 75.0%
! GGGCAGGGGCGGGGGCAGAT+TGG + chr3_4:64731307-64731326 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 64729210 64733169 64729210 ID=Msa0514070;Name=Msa0514070
chr3_4 mRNA 64729210 64733169 64729210 ID=Msa0514070-mRNA-1;Parent=Msa0514070;Name=Msa0514070-mRNA-1;_AED=0.04;_eAED=0.04;_QI=84|1|1|1|1|1|3|136|267
chr3_4 exon 64729210 64729782 64729210 ID=Msa0514070-mRNA-1:exon:16328;Parent=Msa0514070-mRNA-1
chr3_4 exon 64732395 64732667 64732395 ID=Msa0514070-mRNA-1:exon:16327;Parent=Msa0514070-mRNA-1
chr3_4 exon 64732992 64733169 64732992 ID=Msa0514070-mRNA-1:exon:16326;Parent=Msa0514070-mRNA-1
chr3_4 five_prime_UTR 64733086 64733169 64733086 ID=Msa0514070-mRNA-1:five_prime_utr;Parent=Msa0514070-mRNA-1
chr3_4 CDS 64732992 64733085 64732992 ID=Msa0514070-mRNA-1:cds;Parent=Msa0514070-mRNA-1
chr3_4 CDS 64732395 64732667 64732395 ID=Msa0514070-mRNA-1:cds;Parent=Msa0514070-mRNA-1
chr3_4 CDS 64729346 64729782 64729346 ID=Msa0514070-mRNA-1:cds;Parent=Msa0514070-mRNA-1
chr3_4 three_prime_UTR 64729210 64729345 64729210 ID=Msa0514070-mRNA-1:three_prime_utr;Parent=Msa0514070-mRNA-1
Gene Sequence

>Msa0514070

ATGCCACCGTGTGAAGACAGTGTTGATTTCAATTTAATCAACAAGTTTGAGGAAGACGTCTCTGAATCCAAACCTTCTGCTTTTGTTTTCTACAATGATGATGACGAAGACGACGACGACGTTTTTTATCAAAAGGATTTTGACTATAAACCCCCTCTTACGGGTATGTTTGTACCTCCCTGCCTGGAGATGACTACCGGGTCATCCGATGACAAAAAGAAGTCTGTTCTGGTAGGGGTTGACAAGAAGAACCCTGATCTCCTTAAGTTCGGGGACAGCTATGCCGTCCACAAAGACATGGGTATTACGGTCTCTTCTGAACTCAAACCTCATGTCCGTGATCCCTCATGGTGGTTTGCATTCGACAGTTTCGGCAACGAGGATGAGTTTGATGCATTCCCTCGTCCAAGAAGCTCTGGTCATAATGTTTATAGTCCACTTTTTCGTATTGATTATATACCTCCGATTGCGGGTATGTTTGTACCTCCATACCTGAAGGCTTTTGTGGAAGAGATGACTACTGGGTCATCCGATGACAACAACAAGAAGAATTCTTTTCAGGTGGTCGTAGGCAACCTCCCATACGAGACAAGGAACCCTGATTTGCTTCAGCTTTTCCAGTCTTTTGGTCATGTCATTAGTGCCGATGTTGCTGTTGATCAAGACTCTGGCTGTAGTGCCCGTTTTGGCTTTGTTAACTTTGCCACCAGGGAAGCTGCTCAGAGTGCTATTGAAAGAGTCAATGGGATTGACTACCACAATTTCGTACTTAGAGTTGAATGGTCCTCCCCAACAACAACCTAA

Protein sequence

>Msa0514070

MPPCEDSVDFNLINKFEEDVSESKPSAFVFYNDDDEDDDDVFYQKDFDYKPPLTGMFVPPCLEMTTGSSDDKKKSVLVGVDKKNPDLLKFGDSYAVHKDMGITVSSELKPHVRDPSWWFAFDSFGNEDEFDAFPRPRSSGHNVYSPLFRIDYIPPIAGMFVPPYLKAFVEEMTTGSSDDNNKKNSFQVVVGNLPYETRNPDLLQLFQSFGHVISADVAVDQDSGCSARFGFVNFATREAAQSAIERVNGIDYHNFVLRVEWSSPTTT*