Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134450 | XP_003631114.1 | 79.518 | 83 | 17 | 0 | 121 | 203 | 496 | 578 | 1.46e-33 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134450 | sp|Q9MUK5|TOC64_PEA | 74.699 | 83 | 21 | 0 | 121 | 203 | 494 | 576 | 4.82e-34 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134450 | G7LE58 | 79.518 | 83 | 17 | 0 | 121 | 203 | 496 | 578 | 6.96e-34 | 137 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa1134450 | 0.812800 | 3.533186e-51 | -8.615850e-47 |
| Msa0037880 | Msa1134450 | 0.815294 | 9.950626e-52 | -8.615850e-47 |
| Msa0604510 | Msa1134450 | 0.806911 | 6.534519e-50 | -8.615850e-47 |
| Msa0662650 | Msa1134450 | 0.801750 | 7.769767e-49 | -8.615850e-47 |
| Msa0664410 | Msa1134450 | 0.812849 | 3.446773e-51 | -8.615850e-47 |
| Msa0701010 | Msa1134450 | 0.804724 | 1.882501e-49 | -8.615850e-47 |
| Msa0705970 | Msa1134450 | 0.800953 | 1.131258e-48 | -8.615850e-47 |
| Msa0708860 | Msa1134450 | 0.807044 | 6.126621e-50 | -8.615850e-47 |
| Msa0743720 | Msa1134450 | 0.823754 | 1.168030e-53 | -8.615850e-47 |
| Msa0766630 | Msa1134450 | 0.808189 | 3.499678e-50 | -8.615850e-47 |
| Msa0178960 | Msa1134450 | 0.802417 | 5.667296e-49 | -8.615850e-47 |
| Msa0208090 | Msa1134450 | 0.800473 | 1.418037e-48 | -8.615850e-47 |
| Msa0223260 | Msa1134450 | 0.813308 | 2.734188e-51 | -8.615850e-47 |
| Msa0402290 | Msa1134450 | 0.810279 | 1.247693e-50 | -8.615850e-47 |
| Msa0424320 | Msa1134450 | 0.805116 | 1.558942e-49 | -8.615850e-47 |
| Msa0467640 | Msa1134450 | -0.822664 | 2.099437e-53 | -8.615850e-47 |
| Msa0473270 | Msa1134450 | 0.806262 | 8.957798e-50 | -8.615850e-47 |
| Msa1014540 | Msa1134450 | 0.810195 | 1.300234e-50 | -8.615850e-47 |
| Msa1030970 | Msa1134450 | 0.806320 | 8.710738e-50 | -8.615850e-47 |
| Msa1100050 | Msa1134450 | 0.813104 | 3.030426e-51 | -8.615850e-47 |
| Msa0323080 | Msa1134450 | 0.816318 | 5.881757e-52 | -8.615850e-47 |
| Msa0355220 | Msa1134450 | 0.801451 | 8.947721e-49 | -8.615850e-47 |
| Msa1119480 | Msa1134450 | 0.809530 | 1.807775e-50 | -8.615850e-47 |
| Msa1134450 | Msa1173470 | 0.800768 | 1.234350e-48 | -8.615850e-47 |
| Msa1134450 | Msa1174040 | 0.813467 | 2.522300e-51 | -8.615850e-47 |
| Msa1134450 | Msa1238930 | 0.801820 | 7.517216e-49 | -8.615850e-47 |
| Msa1134450 | Msa1244250 | 0.812792 | 3.547202e-51 | -8.615850e-47 |
| Msa1134450 | Msa1252390 | 0.812588 | 3.931790e-51 | -8.615850e-47 |
| Msa1134450 | Msa1284680 | 0.820574 | 6.384148e-53 | -8.615850e-47 |
| Msa1134450 | Msa1296140 | 0.893448 | 6.227230e-75 | -8.615850e-47 |
| Msa1134450 | Msa1353470 | 0.800392 | 1.472950e-48 | -8.615850e-47 |
| Msa1134450 | Msa1420140 | 0.813556 | 2.411424e-51 | -8.615850e-47 |
| Msa1134450 | Msa1450760 | 0.801198 | 1.008475e-48 | -8.615850e-47 |
| Msa1134450 | Msa1451620 | -0.800371 | 1.487029e-48 | -8.615850e-47 |
| Msa0484780 | Msa1134450 | 0.802235 | 6.176412e-49 | -8.615850e-47 |
| Msa0512750 | Msa1134450 | 0.822256 | 2.611143e-53 | -8.615850e-47 |
| Msa0514070 | Msa1134450 | -0.821777 | 3.371869e-53 | -8.615850e-47 |
| Msa0562440 | Msa1134450 | 0.817213 | 3.706260e-52 | -8.615850e-47 |
| Msa0593650 | Msa1134450 | 0.818015 | 2.443221e-52 | -8.615850e-47 |
| Msa0868700 | Msa1134450 | 0.803751 | 3.001887e-49 | -8.615850e-47 |
| Msa0876580 | Msa1134450 | 0.803013 | 4.268274e-49 | -8.615850e-47 |
| Msa0877250 | Msa1134450 | 0.811452 | 6.950504e-51 | -8.615850e-47 |
| Msa0953120 | Msa1134450 | 0.804534 | 2.062666e-49 | -8.615850e-47 |
| Msa0963070 | Msa1134450 | 0.800422 | 1.451994e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134450 | MtrunA17_Chr8g0393041 | 79.518 | 83 | 17 | 0 | 121 | 203 | 496 | 578 | 1.34e-37 | 137 |
| Msa1134450 | MtrunA17_Chr3g0102921 | 92.727 | 55 | 4 | 0 | 5 | 59 | 302 | 356 | 6.04e-28 | 110 |
| Msa1134450 | MtrunA17_Chr5g0447041 | 56.627 | 83 | 32 | 2 | 5 | 83 | 297 | 379 | 1.41e-21 | 92.4 |
| Msa1134450 | MtrunA17_Chr4g0050371 | 64.706 | 68 | 24 | 0 | 136 | 203 | 520 | 587 | 1.33e-20 | 89.4 |
| Msa1134450 | MtrunA17_Chr1g0192811 | 45.455 | 66 | 36 | 0 | 138 | 203 | 124 | 189 | 1.93e-13 | 68.6 |
| Msa1134450 | MtrunA17_Chr3g0097231 | 42.500 | 80 | 46 | 0 | 124 | 203 | 31 | 110 | 6.11e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134450 | AT3G17970.1 | 74.286 | 70 | 18 | 0 | 134 | 203 | 504 | 573 | 5.83e-28 | 110 |
| Msa1134450 | AT5G09420.1 | 54.878 | 82 | 37 | 0 | 122 | 203 | 506 | 587 | 7.40e-21 | 90.5 |
| Msa1134450 | AT1G56440.2 | 50.000 | 70 | 35 | 0 | 138 | 207 | 107 | 176 | 2.29e-15 | 74.3 |
| Msa1134450 | AT1G56440.1 | 50.000 | 70 | 35 | 0 | 138 | 207 | 117 | 186 | 2.55e-15 | 74.3 |
| Msa1134450 | AT3G17970.2 | 78.378 | 37 | 8 | 0 | 134 | 170 | 504 | 540 | 6.51e-12 | 64.3 |
| Msa1134450 | AT2G42810.2 | 40.000 | 80 | 48 | 0 | 124 | 203 | 33 | 112 | 2.39e-11 | 62.8 |
| Msa1134450 | AT2G42810.3 | 40.000 | 80 | 48 | 0 | 124 | 203 | 33 | 112 | 2.60e-11 | 62.8 |
| Msa1134450 | AT2G42810.1 | 40.000 | 80 | 48 | 0 | 124 | 203 | 33 | 112 | 3.26e-11 | 62.4 |
| Msa1134450 | AT2G42810.5 | 40.000 | 80 | 48 | 0 | 124 | 203 | 33 | 112 | 3.26e-11 | 62.4 |
| Msa1134450 | AT2G42810.4 | 40.000 | 80 | 48 | 0 | 124 | 203 | 33 | 112 | 3.26e-11 | 62.4 |
| Msa1134450 | AT3G44730.2 | 58.000 | 50 | 21 | 0 | 5 | 54 | 285 | 334 | 9.36e-11 | 61.2 |
| Msa1134450 | AT3G44730.3 | 58.000 | 50 | 21 | 0 | 5 | 54 | 285 | 334 | 9.36e-11 | 61.2 |
| Msa1134450 | AT3G44730.1 | 58.000 | 50 | 21 | 0 | 5 | 54 | 240 | 289 | 9.58e-11 | 61.2 |
| Msa1134450 | AT3G44730.4 | 58.000 | 50 | 21 | 0 | 5 | 54 | 240 | 289 | 9.58e-11 | 61.2 |
Find 45 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTGCTGACAACATTTC+TGG | 0.110360 | 7_4:-938430 | None:intergenic |
| TGGTTAGTTGTGCAGGTTTA+AGG | 0.180613 | 7_4:+937569 | Msa1134450:intron |
| TTCCTGAAGAAAATATTAAA+AGG | 0.186939 | 7_4:+938175 | Msa1134450:CDS |
| CTGCCACTACTTATCTTTAT+AGG | 0.202154 | 7_4:-938490 | None:intergenic |
| CGTGATAATGTTCAGAATTA+TGG | 0.203289 | 7_4:+938313 | Msa1134450:CDS |
| GCCACCACAACTGCAGAATT+TGG | 0.215014 | 7_4:-938287 | None:intergenic |
| AGGCAACATACTACAGTAAC+AGG | 0.292638 | 7_4:+938560 | Msa1134450:CDS |
| AAAATATTAAAAGGGGATAT+TGG | 0.308387 | 7_4:+938184 | Msa1134450:CDS |
| GGCTTGATTTCCCTTCTCTT+TGG | 0.318040 | 7_4:-938469 | None:intergenic |
| AACTAATTATCATAATATTC+AGG | 0.337584 | 7_4:-938868 | None:intergenic |
| TCTTAATCAAAGAAGTAGTT+TGG | 0.360056 | 7_4:+938249 | Msa1134450:CDS |
| TCGCAGAGTTTAATAGCTTC+AGG | 0.365201 | 7_4:-938531 | None:intergenic |
| TCCCTTCTCTTTGGTAATCT+CGG | 0.378444 | 7_4:-938460 | None:intergenic |
| TCCTGAAGAAAATATTAAAA+GGG | 0.418827 | 7_4:+938176 | Msa1134450:CDS |
| TCTCTTCTCTTGTTTAACTC+TGG | 0.429383 | 7_4:+938388 | Msa1134450:CDS |
| CATTTCTCTACCAAATCAAA+AGG | 0.441421 | 7_4:+938358 | Msa1134450:CDS |
| AGGTGCAGCTAGAGAGATGT+TGG | 0.449494 | 7_4:+938684 | Msa1134450:CDS |
| ACTTGAGCCATGGTTACAAA+AGG | 0.453558 | 7_4:+938750 | Msa1134450:CDS |
| AATCTAATACTCAGAGTTGA+AGG | 0.473999 | 7_4:+938800 | Msa1134450:three_prime_UTR |
| TTCTCCAAATTCTGCAGTTG+TGG | 0.478018 | 7_4:+938283 | Msa1134450:CDS |
| TTTCAGCTGCTGAAAGATTG+AGG | 0.479177 | 7_4:+938777 | Msa1134450:exon |
| TCCAAATTCTGCAGTTGTGG+TGG | 0.496843 | 7_4:+938286 | Msa1134450:CDS |
| CGCCGAGATTACCAAAGAGA+AGG | 0.526826 | 7_4:+938458 | Msa1134450:CDS |
| CCTGAAGAAAATATTAAAAG+GGG | 0.541129 | 7_4:+938177 | Msa1134450:CDS |
| GGTGCAGCTAGAGAGATGTT+GGG | 0.552745 | 7_4:+938685 | Msa1134450:CDS |
| AAGTAGTGGCAGAAAGCCAT+TGG | 0.556330 | 7_4:+938501 | Msa1134450:CDS |
| TCTCTCTAGCTGCACCTCTA+CGG | 0.560147 | 7_4:-938678 | None:intergenic |
| GCTCAAGCGTATCTTGAGCT+TGG | 0.566479 | 7_4:+938583 | Msa1134450:CDS |
| CTTGAGCCATGGTTACAAAA+GGG | 0.568163 | 7_4:+938751 | Msa1134450:CDS |
| ATGTCCTTGCACTTGAGCCA+TGG | 0.569169 | 7_4:+938740 | Msa1134450:CDS |
| GGGATATTGGTTGTATCTCA+AGG | 0.571373 | 7_4:+938197 | Msa1134450:CDS |
| GTAACCATGGCTCAAGTGCA+AGG | 0.575415 | 7_4:-938744 | None:intergenic |
| TTGTACAATCTGCCTCAGCT+TGG | 0.578994 | 7_4:-938615 | None:intergenic |
| ATCCAGAAATGTTGTCAGCA+AGG | 0.579864 | 7_4:+938428 | Msa1134450:CDS |
| GCCGAGATTACCAAAGAGAA+GGG | 0.597447 | 7_4:+938459 | Msa1134450:CDS |
| AGCTGCACCTCTACGGAAGT+AGG | 0.604945 | 7_4:-938671 | None:intergenic |
| AAGCCTATAAAGATAAGTAG+TGG | 0.608435 | 7_4:+938487 | Msa1134450:CDS |
| ATTAAACTCTGCGAAGAACA+AGG | 0.609495 | 7_4:+938540 | Msa1134450:CDS |
| CTTCTCTTTGGTAATCTCGG+CGG | 0.640155 | 7_4:-938457 | None:intergenic |
| AGCTTCAGGATAAAATCCAA+TGG | 0.642175 | 7_4:-938517 | None:intergenic |
| TATTGGTTGTATCTCAAGGA+GGG | 0.651987 | 7_4:+938201 | Msa1134450:CDS |
| GTGAAGGCCTACTTCCGTAG+AGG | 0.672364 | 7_4:+938664 | Msa1134450:CDS |
| TGGCAGTTATCTCCAAGCTG+AGG | 0.688754 | 7_4:+938603 | Msa1134450:CDS |
| GGCAACATACTACAGTAACA+GGG | 0.700855 | 7_4:+938561 | Msa1134450:CDS |
| ATATTGGTTGTATCTCAAGG+AGG | 0.753355 | 7_4:+938200 | Msa1134450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTAATTATCATAATATTC+AGG | - | chr7_4:938871-938890 | None:intergenic | 15.0% |
| !! | AACTAATTATCATAATATTC+AGG | - | chr7_4:938871-938890 | None:intergenic | 15.0% |
| !! | TACAAGCTTATGTTAATAAA+TGG | + | chr7_4:937752-937771 | Msa1134450:intron | 20.0% |
| !! | TACAAGCTTATGTTAATAAA+TGG | + | chr7_4:937752-937771 | Msa1134450:intron | 20.0% |
| !! | TTCCTGAAGAAAATATTAAA+AGG | + | chr7_4:938175-938194 | Msa1134450:CDS | 20.0% |
| !! | TCCTGAAGAAAATATTAAAA+GGG | + | chr7_4:938176-938195 | Msa1134450:CDS | 20.0% |
| !! | AAAATATTAAAAGGGGATAT+TGG | + | chr7_4:938184-938203 | Msa1134450:CDS | 20.0% |
| !!! | GAAATGAAACATTTTGATTT+GGG | - | chr7_4:938344-938363 | None:intergenic | 20.0% |
| !!! | AGAAATGAAACATTTTGATT+TGG | - | chr7_4:938345-938364 | None:intergenic | 20.0% |
| !! | TACAAGCTTATGTTAATAAA+TGG | + | chr7_4:937752-937771 | Msa1134450:intron | 20.0% |
| !! | TACAAGCTTATGTTAATAAA+TGG | + | chr7_4:937752-937771 | Msa1134450:intron | 20.0% |
| !! | TTCCTGAAGAAAATATTAAA+AGG | + | chr7_4:938175-938194 | Msa1134450:CDS | 20.0% |
| !! | TCCTGAAGAAAATATTAAAA+GGG | + | chr7_4:938176-938195 | Msa1134450:CDS | 20.0% |
| !! | AAAATATTAAAAGGGGATAT+TGG | + | chr7_4:938184-938203 | Msa1134450:CDS | 20.0% |
| !!! | GAAATGAAACATTTTGATTT+GGG | - | chr7_4:938344-938363 | None:intergenic | 20.0% |
| !!! | AGAAATGAAACATTTTGATT+TGG | - | chr7_4:938345-938364 | None:intergenic | 20.0% |
| !! | AGAGTTTAATATATTTCTGC+AGG | + | chr7_4:937515-937534 | Msa1134450:intron | 25.0% |
| ! | AGGAATAGTAGTTATAGTAT+TGG | + | chr7_4:937549-937568 | Msa1134450:intron | 25.0% |
| !!! | GTTTTTTGATTGACATGAAT+AGG | + | chr7_4:937620-937639 | Msa1134450:intron | 25.0% |
| !! | TATGTTAATAAATGGCGTTT+TGG | + | chr7_4:937791-937810 | Msa1134450:intron | 25.0% |
| !! | TTCCTTTTCTATACTGTAAT+TGG | + | chr7_4:938103-938122 | Msa1134450:intron | 25.0% |
| ! | ATCCAATTACAGTATAGAAA+AGG | - | chr7_4:938108-938127 | None:intergenic | 25.0% |
| ! | CCTGAAGAAAATATTAAAAG+GGG | + | chr7_4:938177-938196 | Msa1134450:CDS | 25.0% |
| ! | TCTTAATCAAAGAAGTAGTT+TGG | + | chr7_4:938249-938268 | Msa1134450:CDS | 25.0% |
| !!! | ATTTTCAAGGATTTTGAGTT+AGG | + | chr7_4:938823-938842 | Msa1134450:three_prime_UTR | 25.0% |
| !! | AGAGTTTAATATATTTCTGC+AGG | + | chr7_4:937515-937534 | Msa1134450:intron | 25.0% |
| ! | AGGAATAGTAGTTATAGTAT+TGG | + | chr7_4:937549-937568 | Msa1134450:intron | 25.0% |
| !!! | GTTTTTTGATTGACATGAAT+AGG | + | chr7_4:937620-937639 | Msa1134450:intron | 25.0% |
| !! | TATGTTAATAAATGGCGTTT+TGG | + | chr7_4:937791-937810 | Msa1134450:intron | 25.0% |
| !! | TTCCTTTTCTATACTGTAAT+TGG | + | chr7_4:938103-938122 | Msa1134450:intron | 25.0% |
| ! | ATCCAATTACAGTATAGAAA+AGG | - | chr7_4:938108-938127 | None:intergenic | 25.0% |
| ! | CCTGAAGAAAATATTAAAAG+GGG | + | chr7_4:938177-938196 | Msa1134450:CDS | 25.0% |
| ! | TCTTAATCAAAGAAGTAGTT+TGG | + | chr7_4:938249-938268 | Msa1134450:CDS | 25.0% |
| !!! | ATTTTCAAGGATTTTGAGTT+AGG | + | chr7_4:938823-938842 | Msa1134450:three_prime_UTR | 25.0% |
| !!! | TTCTGCAGGTTTTTTAATTC+AGG | + | chr7_4:937529-937548 | Msa1134450:intron | 30.0% |
| TCATGTCAATCAAAAAACGA+TGG | - | chr7_4:937618-937637 | None:intergenic | 30.0% | |
| !!! | TTTTGGAACTTGAAAATGCA+GGG | + | chr7_4:937808-937827 | Msa1134450:intron | 30.0% |
| AGGATCATCAAATAAAGTTG+TGG | + | chr7_4:937831-937850 | Msa1134450:intron | 30.0% | |
| GATTGCATTCTATGTTTGAA+AGG | + | chr7_4:937853-937872 | Msa1134450:intron | 30.0% | |
| GTTTGAAAGGATACTATGAA+TGG | + | chr7_4:937866-937885 | Msa1134450:intron | 30.0% | |
| TACTATGAATGGAAACTATC+TGG | + | chr7_4:937877-937896 | Msa1134450:intron | 30.0% | |
| ! | CCCCTTTTAATATTTTCTTC+AGG | - | chr7_4:938180-938199 | None:intergenic | 30.0% |
| ! | CGTGATAATGTTCAGAATTA+TGG | + | chr7_4:938313-938332 | Msa1134450:CDS | 30.0% |
| !!! | ATGAAACATTTTGATTTGGG+AGG | - | chr7_4:938341-938360 | None:intergenic | 30.0% |
| CATTTCTCTACCAAATCAAA+AGG | + | chr7_4:938358-938377 | Msa1134450:CDS | 30.0% | |
| !! | AGAAATCGAACCTTTTGATT+TGG | - | chr7_4:938371-938390 | None:intergenic | 30.0% |
| AAGCCTATAAAGATAAGTAG+TGG | + | chr7_4:938487-938506 | Msa1134450:CDS | 30.0% | |
| AATCTAATACTCAGAGTTGA+AGG | + | chr7_4:938800-938819 | Msa1134450:three_prime_UTR | 30.0% | |
| !!! | TTCTGCAGGTTTTTTAATTC+AGG | + | chr7_4:937529-937548 | Msa1134450:intron | 30.0% |
| TCATGTCAATCAAAAAACGA+TGG | - | chr7_4:937618-937637 | None:intergenic | 30.0% | |
| !!! | TTTTGGAACTTGAAAATGCA+GGG | + | chr7_4:937808-937827 | Msa1134450:intron | 30.0% |
| AGGATCATCAAATAAAGTTG+TGG | + | chr7_4:937831-937850 | Msa1134450:intron | 30.0% | |
| GATTGCATTCTATGTTTGAA+AGG | + | chr7_4:937853-937872 | Msa1134450:intron | 30.0% | |
| GTTTGAAAGGATACTATGAA+TGG | + | chr7_4:937866-937885 | Msa1134450:intron | 30.0% | |
| TACTATGAATGGAAACTATC+TGG | + | chr7_4:937877-937896 | Msa1134450:intron | 30.0% | |
| ! | CCCCTTTTAATATTTTCTTC+AGG | - | chr7_4:938180-938199 | None:intergenic | 30.0% |
| ! | CGTGATAATGTTCAGAATTA+TGG | + | chr7_4:938313-938332 | Msa1134450:CDS | 30.0% |
| !!! | ATGAAACATTTTGATTTGGG+AGG | - | chr7_4:938341-938360 | None:intergenic | 30.0% |
| CATTTCTCTACCAAATCAAA+AGG | + | chr7_4:938358-938377 | Msa1134450:CDS | 30.0% | |
| !! | AGAAATCGAACCTTTTGATT+TGG | - | chr7_4:938371-938390 | None:intergenic | 30.0% |
| AAGCCTATAAAGATAAGTAG+TGG | + | chr7_4:938487-938506 | Msa1134450:CDS | 30.0% | |
| AATCTAATACTCAGAGTTGA+AGG | + | chr7_4:938800-938819 | Msa1134450:three_prime_UTR | 30.0% | |
| !! | ATAGTATTGGTTAGTTGTGC+AGG | + | chr7_4:937562-937581 | Msa1134450:intron | 35.0% |
| ! | GTTTAAGGTTGTTTGGTTGT+TGG | + | chr7_4:937584-937603 | Msa1134450:intron | 35.0% |
| !!! | GTTTTGGAACTTGAAAATGC+AGG | + | chr7_4:937807-937826 | Msa1134450:intron | 35.0% |
| TATGAATGGAAACTATCTGG+TGG | + | chr7_4:937880-937899 | Msa1134450:intron | 35.0% | |
| !!! | CACAACAATTTTTTGCAGCT+TGG | + | chr7_4:938148-938167 | Msa1134450:intron | 35.0% |
| ! | ATATTGGTTGTATCTCAAGG+AGG | + | chr7_4:938200-938219 | Msa1134450:CDS | 35.0% |
| ! | TATTGGTTGTATCTCAAGGA+GGG | + | chr7_4:938201-938220 | Msa1134450:CDS | 35.0% |
| ! | TCTCTTCTCTTGTTTAACTC+TGG | + | chr7_4:938388-938407 | Msa1134450:CDS | 35.0% |
| CTGCCACTACTTATCTTTAT+AGG | - | chr7_4:938493-938512 | None:intergenic | 35.0% | |
| AGCTTCAGGATAAAATCCAA+TGG | - | chr7_4:938520-938539 | None:intergenic | 35.0% | |
| ATTAAACTCTGCGAAGAACA+AGG | + | chr7_4:938540-938559 | Msa1134450:CDS | 35.0% | |
| ! | TCTTGACAAAAAGAGTGTGA+AGG | + | chr7_4:938648-938667 | Msa1134450:CDS | 35.0% |
| ! | TCAGAGTTGAAGGATTTTCA+AGG | + | chr7_4:938810-938829 | Msa1134450:three_prime_UTR | 35.0% |
| !!! | TTCAAGGATTTTGAGTTAGG+AGG | + | chr7_4:938826-938845 | Msa1134450:three_prime_UTR | 35.0% |
| !! | ATAGTATTGGTTAGTTGTGC+AGG | + | chr7_4:937562-937581 | Msa1134450:intron | 35.0% |
| ! | GTTTAAGGTTGTTTGGTTGT+TGG | + | chr7_4:937584-937603 | Msa1134450:intron | 35.0% |
| !!! | GTTTTGGAACTTGAAAATGC+AGG | + | chr7_4:937807-937826 | Msa1134450:intron | 35.0% |
| TATGAATGGAAACTATCTGG+TGG | + | chr7_4:937880-937899 | Msa1134450:intron | 35.0% | |
| !!! | CACAACAATTTTTTGCAGCT+TGG | + | chr7_4:938148-938167 | Msa1134450:intron | 35.0% |
| ! | ATATTGGTTGTATCTCAAGG+AGG | + | chr7_4:938200-938219 | Msa1134450:CDS | 35.0% |
| ! | TATTGGTTGTATCTCAAGGA+GGG | + | chr7_4:938201-938220 | Msa1134450:CDS | 35.0% |
| ! | TCTCTTCTCTTGTTTAACTC+TGG | + | chr7_4:938388-938407 | Msa1134450:CDS | 35.0% |
| CTGCCACTACTTATCTTTAT+AGG | - | chr7_4:938493-938512 | None:intergenic | 35.0% | |
| AGCTTCAGGATAAAATCCAA+TGG | - | chr7_4:938520-938539 | None:intergenic | 35.0% | |
| ATTAAACTCTGCGAAGAACA+AGG | + | chr7_4:938540-938559 | Msa1134450:CDS | 35.0% | |
| ! | TCTTGACAAAAAGAGTGTGA+AGG | + | chr7_4:938648-938667 | Msa1134450:CDS | 35.0% |
| ! | TCAGAGTTGAAGGATTTTCA+AGG | + | chr7_4:938810-938829 | Msa1134450:three_prime_UTR | 35.0% |
| !!! | TTCAAGGATTTTGAGTTAGG+AGG | + | chr7_4:938826-938845 | Msa1134450:three_prime_UTR | 35.0% |
| CTTAGAGATGAGACTCACAA+TGG | + | chr7_4:937482-937501 | Msa1134450:intron | 40.0% | |
| ! | TGGTTAGTTGTGCAGGTTTA+AGG | + | chr7_4:937569-937588 | Msa1134450:intron | 40.0% |
| ! | TGTGCAGGTTTAAGGTTGTT+TGG | + | chr7_4:937577-937596 | Msa1134450:intron | 40.0% |
| AAGGTTGTTTGGTTGTTGGT+TGG | + | chr7_4:937588-937607 | Msa1134450:intron | 40.0% | |
| ! | AGGTTGTTTGGTTGTTGGTT+GGG | + | chr7_4:937589-937608 | Msa1134450:intron | 40.0% |
| TACAACATACACAGTCTGCA+AGG | - | chr7_4:937661-937680 | None:intergenic | 40.0% | |
| TCTCATCATGTTGCTAGACA+TGG | + | chr7_4:937682-937701 | Msa1134450:intron | 40.0% | |
| CTATTGTGCAGATCAGAACA+TGG | + | chr7_4:937705-937724 | Msa1134450:intron | 40.0% | |
| TGGAAACTATCTGGTGGAAT+TGG | + | chr7_4:937886-937905 | Msa1134450:intron | 40.0% | |
| TGCTGATATTCACCGTTAAG+TGG | + | chr7_4:937990-938009 | Msa1134450:intron | 40.0% | |
| TTGAGCTACTGTCCACTTAA+CGG | - | chr7_4:938005-938024 | None:intergenic | 40.0% | |
| TTCAGGGTAAACTGGTAAAC+AGG | + | chr7_4:938039-938058 | Msa1134450:intron | 40.0% | |
| ! | GGGATATTGGTTGTATCTCA+AGG | + | chr7_4:938197-938216 | Msa1134450:CDS | 40.0% |
| TTCTCCAAATTCTGCAGTTG+TGG | + | chr7_4:938283-938302 | Msa1134450:CDS | 40.0% | |
| ATCCAGAAATGTTGTCAGCA+AGG | + | chr7_4:938428-938447 | Msa1134450:CDS | 40.0% | |
| TTCCTTGCTGACAACATTTC+TGG | - | chr7_4:938433-938452 | None:intergenic | 40.0% | |
| ! | TCCCTTCTCTTTGGTAATCT+CGG | - | chr7_4:938463-938482 | None:intergenic | 40.0% |
| TCGCAGAGTTTAATAGCTTC+AGG | - | chr7_4:938534-938553 | None:intergenic | 40.0% | |
| AGGCAACATACTACAGTAAC+AGG | + | chr7_4:938560-938579 | Msa1134450:CDS | 40.0% | |
| GGCAACATACTACAGTAACA+GGG | + | chr7_4:938561-938580 | Msa1134450:CDS | 40.0% | |
| ACTTGAGCCATGGTTACAAA+AGG | + | chr7_4:938750-938769 | Msa1134450:CDS | 40.0% | |
| CTTGAGCCATGGTTACAAAA+GGG | + | chr7_4:938751-938770 | Msa1134450:CDS | 40.0% | |
| ! | AAACAGCCCTTTTGTAACCA+TGG | - | chr7_4:938760-938779 | None:intergenic | 40.0% |
| TTTCAGCTGCTGAAAGATTG+AGG | + | chr7_4:938777-938796 | Msa1134450:exon | 40.0% | |
| CTTAGAGATGAGACTCACAA+TGG | + | chr7_4:937482-937501 | Msa1134450:intron | 40.0% | |
| ! | TGGTTAGTTGTGCAGGTTTA+AGG | + | chr7_4:937569-937588 | Msa1134450:intron | 40.0% |
| ! | TGTGCAGGTTTAAGGTTGTT+TGG | + | chr7_4:937577-937596 | Msa1134450:intron | 40.0% |
| AAGGTTGTTTGGTTGTTGGT+TGG | + | chr7_4:937588-937607 | Msa1134450:intron | 40.0% | |
| ! | AGGTTGTTTGGTTGTTGGTT+GGG | + | chr7_4:937589-937608 | Msa1134450:intron | 40.0% |
| TACAACATACACAGTCTGCA+AGG | - | chr7_4:937661-937680 | None:intergenic | 40.0% | |
| TCTCATCATGTTGCTAGACA+TGG | + | chr7_4:937682-937701 | Msa1134450:intron | 40.0% | |
| CTATTGTGCAGATCAGAACA+TGG | + | chr7_4:937705-937724 | Msa1134450:intron | 40.0% | |
| TGGAAACTATCTGGTGGAAT+TGG | + | chr7_4:937886-937905 | Msa1134450:intron | 40.0% | |
| TGCTGATATTCACCGTTAAG+TGG | + | chr7_4:937990-938009 | Msa1134450:intron | 40.0% | |
| TTGAGCTACTGTCCACTTAA+CGG | - | chr7_4:938005-938024 | None:intergenic | 40.0% | |
| TTCAGGGTAAACTGGTAAAC+AGG | + | chr7_4:938039-938058 | Msa1134450:intron | 40.0% | |
| ! | GGGATATTGGTTGTATCTCA+AGG | + | chr7_4:938197-938216 | Msa1134450:CDS | 40.0% |
| TTCTCCAAATTCTGCAGTTG+TGG | + | chr7_4:938283-938302 | Msa1134450:CDS | 40.0% | |
| ATCCAGAAATGTTGTCAGCA+AGG | + | chr7_4:938428-938447 | Msa1134450:CDS | 40.0% | |
| TTCCTTGCTGACAACATTTC+TGG | - | chr7_4:938433-938452 | None:intergenic | 40.0% | |
| ! | TCCCTTCTCTTTGGTAATCT+CGG | - | chr7_4:938463-938482 | None:intergenic | 40.0% |
| TCGCAGAGTTTAATAGCTTC+AGG | - | chr7_4:938534-938553 | None:intergenic | 40.0% | |
| AGGCAACATACTACAGTAAC+AGG | + | chr7_4:938560-938579 | Msa1134450:CDS | 40.0% | |
| GGCAACATACTACAGTAACA+GGG | + | chr7_4:938561-938580 | Msa1134450:CDS | 40.0% | |
| ACTTGAGCCATGGTTACAAA+AGG | + | chr7_4:938750-938769 | Msa1134450:CDS | 40.0% | |
| CTTGAGCCATGGTTACAAAA+GGG | + | chr7_4:938751-938770 | Msa1134450:CDS | 40.0% | |
| ! | AAACAGCCCTTTTGTAACCA+TGG | - | chr7_4:938760-938779 | None:intergenic | 40.0% |
| TTTCAGCTGCTGAAAGATTG+AGG | + | chr7_4:938777-938796 | Msa1134450:exon | 40.0% | |
| TGGAACTTGAAAATGCAGGG+AGG | + | chr7_4:937811-937830 | Msa1134450:intron | 45.0% | |
| GGAATTGGTGTGTAGAGGTA+TGG | + | chr7_4:937901-937920 | Msa1134450:intron | 45.0% | |
| ! | ATTGGTGTGTAGAGGTATGG+TGG | + | chr7_4:937904-937923 | Msa1134450:intron | 45.0% |
| ACTTTCACTGCCAACTATGG+AGG | - | chr7_4:937971-937990 | None:intergenic | 45.0% | |
| AGCACTTTCACTGCCAACTA+TGG | - | chr7_4:937974-937993 | None:intergenic | 45.0% | |
| AAGCATAGCGCTCAGATTCA+GGG | + | chr7_4:938023-938042 | Msa1134450:intron | 45.0% | |
| TCCAAATTCTGCAGTTGTGG+TGG | + | chr7_4:938286-938305 | Msa1134450:CDS | 45.0% | |
| ! | CTTCTCTTTGGTAATCTCGG+CGG | - | chr7_4:938460-938479 | None:intergenic | 45.0% |
| GCCGAGATTACCAAAGAGAA+GGG | + | chr7_4:938459-938478 | Msa1134450:CDS | 45.0% | |
| GGCTTGATTTCCCTTCTCTT+TGG | - | chr7_4:938472-938491 | None:intergenic | 45.0% | |
| AAGTAGTGGCAGAAAGCCAT+TGG | + | chr7_4:938501-938520 | Msa1134450:CDS | 45.0% | |
| TTGTACAATCTGCCTCAGCT+TGG | - | chr7_4:938618-938637 | None:intergenic | 45.0% | |
| TGGAACTTGAAAATGCAGGG+AGG | + | chr7_4:937811-937830 | Msa1134450:intron | 45.0% | |
| GGAATTGGTGTGTAGAGGTA+TGG | + | chr7_4:937901-937920 | Msa1134450:intron | 45.0% | |
| ! | ATTGGTGTGTAGAGGTATGG+TGG | + | chr7_4:937904-937923 | Msa1134450:intron | 45.0% |
| ACTTTCACTGCCAACTATGG+AGG | - | chr7_4:937971-937990 | None:intergenic | 45.0% | |
| AGCACTTTCACTGCCAACTA+TGG | - | chr7_4:937974-937993 | None:intergenic | 45.0% | |
| AAGCATAGCGCTCAGATTCA+GGG | + | chr7_4:938023-938042 | Msa1134450:intron | 45.0% | |
| TCCAAATTCTGCAGTTGTGG+TGG | + | chr7_4:938286-938305 | Msa1134450:CDS | 45.0% | |
| ! | CTTCTCTTTGGTAATCTCGG+CGG | - | chr7_4:938460-938479 | None:intergenic | 45.0% |
| GCCGAGATTACCAAAGAGAA+GGG | + | chr7_4:938459-938478 | Msa1134450:CDS | 45.0% | |
| GGCTTGATTTCCCTTCTCTT+TGG | - | chr7_4:938472-938491 | None:intergenic | 45.0% | |
| AAGTAGTGGCAGAAAGCCAT+TGG | + | chr7_4:938501-938520 | Msa1134450:CDS | 45.0% | |
| TTGTACAATCTGCCTCAGCT+TGG | - | chr7_4:938618-938637 | None:intergenic | 45.0% | |
| CACAGTCTGCAAGGTTCTCA+AGG | - | chr7_4:937652-937671 | None:intergenic | 50.0% | |
| CTGGTGGAATTGGTGTGTAG+AGG | + | chr7_4:937896-937915 | Msa1134450:intron | 50.0% | |
| ! | AGAGGTATGGTGGAACTGTG+AGG | + | chr7_4:937914-937933 | Msa1134450:intron | 50.0% |
| AGACGGAGAGATCTTCGGTA+AGG | - | chr7_4:937947-937966 | None:intergenic | 50.0% | |
| GAGGAAGACGGAGAGATCTT+CGG | - | chr7_4:937952-937971 | None:intergenic | 50.0% | |
| TCTCCGTCTTCCTCCATAGT+TGG | + | chr7_4:937958-937977 | Msa1134450:intron | 50.0% | |
| CTGCCAACTATGGAGGAAGA+CGG | - | chr7_4:937964-937983 | None:intergenic | 50.0% | |
| CAAGCATAGCGCTCAGATTC+AGG | + | chr7_4:938022-938041 | Msa1134450:intron | 50.0% | |
| CGCTCAGATTCAGGGTAAAC+TGG | + | chr7_4:938031-938050 | Msa1134450:intron | 50.0% | |
| GCCACCACAACTGCAGAATT+TGG | - | chr7_4:938290-938309 | None:intergenic | 50.0% | |
| CGCCGAGATTACCAAAGAGA+AGG | + | chr7_4:938458-938477 | Msa1134450:CDS | 50.0% | |
| GCTCAAGCGTATCTTGAGCT+TGG | + | chr7_4:938583-938602 | Msa1134450:CDS | 50.0% | |
| TGGCAGTTATCTCCAAGCTG+AGG | + | chr7_4:938603-938622 | Msa1134450:CDS | 50.0% | |
| TCTCTCTAGCTGCACCTCTA+CGG | - | chr7_4:938681-938700 | None:intergenic | 50.0% | |
| AGGTGCAGCTAGAGAGATGT+TGG | + | chr7_4:938684-938703 | Msa1134450:CDS | 50.0% | |
| GGTGCAGCTAGAGAGATGTT+GGG | + | chr7_4:938685-938704 | Msa1134450:CDS | 50.0% | |
| ATGTCCTTGCACTTGAGCCA+TGG | + | chr7_4:938740-938759 | Msa1134450:CDS | 50.0% | |
| GTAACCATGGCTCAAGTGCA+AGG | - | chr7_4:938747-938766 | None:intergenic | 50.0% | |
| CACAGTCTGCAAGGTTCTCA+AGG | - | chr7_4:937652-937671 | None:intergenic | 50.0% | |
| CTGGTGGAATTGGTGTGTAG+AGG | + | chr7_4:937896-937915 | Msa1134450:intron | 50.0% | |
| ! | AGAGGTATGGTGGAACTGTG+AGG | + | chr7_4:937914-937933 | Msa1134450:intron | 50.0% |
| AGACGGAGAGATCTTCGGTA+AGG | - | chr7_4:937947-937966 | None:intergenic | 50.0% | |
| GAGGAAGACGGAGAGATCTT+CGG | - | chr7_4:937952-937971 | None:intergenic | 50.0% | |
| TCTCCGTCTTCCTCCATAGT+TGG | + | chr7_4:937958-937977 | Msa1134450:intron | 50.0% | |
| CTGCCAACTATGGAGGAAGA+CGG | - | chr7_4:937964-937983 | None:intergenic | 50.0% | |
| CAAGCATAGCGCTCAGATTC+AGG | + | chr7_4:938022-938041 | Msa1134450:intron | 50.0% | |
| CGCTCAGATTCAGGGTAAAC+TGG | + | chr7_4:938031-938050 | Msa1134450:intron | 50.0% | |
| GCCACCACAACTGCAGAATT+TGG | - | chr7_4:938290-938309 | None:intergenic | 50.0% | |
| CGCCGAGATTACCAAAGAGA+AGG | + | chr7_4:938458-938477 | Msa1134450:CDS | 50.0% | |
| GCTCAAGCGTATCTTGAGCT+TGG | + | chr7_4:938583-938602 | Msa1134450:CDS | 50.0% | |
| TGGCAGTTATCTCCAAGCTG+AGG | + | chr7_4:938603-938622 | Msa1134450:CDS | 50.0% | |
| TCTCTCTAGCTGCACCTCTA+CGG | - | chr7_4:938681-938700 | None:intergenic | 50.0% | |
| AGGTGCAGCTAGAGAGATGT+TGG | + | chr7_4:938684-938703 | Msa1134450:CDS | 50.0% | |
| GGTGCAGCTAGAGAGATGTT+GGG | + | chr7_4:938685-938704 | Msa1134450:CDS | 50.0% | |
| ATGTCCTTGCACTTGAGCCA+TGG | + | chr7_4:938740-938759 | Msa1134450:CDS | 50.0% | |
| GTAACCATGGCTCAAGTGCA+AGG | - | chr7_4:938747-938766 | None:intergenic | 50.0% | |
| GTGAAGGCCTACTTCCGTAG+AGG | + | chr7_4:938664-938683 | Msa1134450:CDS | 55.0% | |
| AGCTGCACCTCTACGGAAGT+AGG | - | chr7_4:938674-938693 | None:intergenic | 55.0% | |
| GTGAAGGCCTACTTCCGTAG+AGG | + | chr7_4:938664-938683 | Msa1134450:CDS | 55.0% | |
| AGCTGCACCTCTACGGAAGT+AGG | - | chr7_4:938674-938693 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 937396 | 939002 | 937396 | ID=Msa1134450;Name=Msa1134450 |
| chr7_4 | mRNA | 937396 | 939002 | 937396 | ID=Msa1134450-mRNA-1;Parent=Msa1134450;Name=Msa1134450-mRNA-1;_AED=0.35;_eAED=0.36;_QI=0|0|0.33|1|1|1|3|213|212 |
| chr7_4 | exon | 937396 | 937403 | 937396 | ID=Msa1134450-mRNA-1:exon:341;Parent=Msa1134450-mRNA-1 |
| chr7_4 | exon | 937584 | 937590 | 937584 | ID=Msa1134450-mRNA-1:exon:342;Parent=Msa1134450-mRNA-1 |
| chr7_4 | exon | 938166 | 939002 | 938166 | ID=Msa1134450-mRNA-1:exon:343;Parent=Msa1134450-mRNA-1 |
| chr7_4 | CDS | 937396 | 937403 | 937396 | ID=Msa1134450-mRNA-1:cds;Parent=Msa1134450-mRNA-1 |
| chr7_4 | CDS | 937584 | 937590 | 937584 | ID=Msa1134450-mRNA-1:cds;Parent=Msa1134450-mRNA-1 |
| chr7_4 | CDS | 938166 | 938789 | 938166 | ID=Msa1134450-mRNA-1:cds;Parent=Msa1134450-mRNA-1 |
| chr7_4 | three_prime_UTR | 938790 | 939002 | 938790 | ID=Msa1134450-mRNA-1:three_prime_utr;Parent=Msa1134450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
