Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1297020 | sp|O64815|HLS1L_ARATH | 67.614 | 352 | 102 | 4 | 4 | 347 | 3 | 350 | 6.30e-170 | 483 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1297020 | A0A072UQ97 | 95.714 | 350 | 14 | 1 | 1 | 349 | 1 | 350 | 0.0 | 684 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1297020 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1297020 | Msa1330770 | 0.889118 | 3.223057e-73 | -8.615850e-47 |
| Msa1297020 | Msa1407300 | 0.911596 | 5.082392e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1297020 | MtrunA17_Chr4g0053961 | 95.714 | 350 | 14 | 1 | 1 | 349 | 1 | 350 | 0.0 | 684 |
| Msa1297020 | MtrunA17_Chr5g0401351 | 69.767 | 344 | 94 | 5 | 4 | 347 | 7 | 340 | 8.52e-177 | 498 |
| Msa1297020 | MtrunA17_Chr4g0001411 | 48.286 | 350 | 150 | 8 | 3 | 349 | 20 | 341 | 3.28e-103 | 310 |
| Msa1297020 | MtrunA17_Chr3g0105631 | 49.240 | 329 | 140 | 5 | 16 | 344 | 17 | 318 | 2.43e-98 | 297 |
| Msa1297020 | MtrunA17_Chr4g0068331 | 33.523 | 352 | 200 | 9 | 3 | 342 | 8 | 337 | 3.58e-50 | 173 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1297020 | AT2G23060.1 | 67.614 | 352 | 102 | 4 | 4 | 347 | 3 | 350 | 6.40e-171 | 483 |
| Msa1297020 | AT4G37580.1 | 69.388 | 343 | 96 | 3 | 8 | 347 | 4 | 340 | 1.38e-163 | 464 |
| Msa1297020 | AT5G67430.1 | 60.465 | 344 | 114 | 6 | 5 | 348 | 7 | 328 | 1.24e-139 | 403 |
| Msa1297020 | AT4G37580.2 | 69.965 | 283 | 79 | 2 | 65 | 347 | 7 | 283 | 1.39e-133 | 386 |
| Msa1297020 | AT5G67430.2 | 60.714 | 280 | 93 | 5 | 69 | 348 | 1 | 263 | 1.56e-112 | 332 |
| Msa1297020 | AT2G23060.2 | 70.507 | 217 | 63 | 1 | 131 | 347 | 1 | 216 | 9.43e-111 | 325 |
| Msa1297020 | AT2G30090.1 | 41.399 | 343 | 162 | 4 | 8 | 348 | 15 | 320 | 2.04e-81 | 254 |
Find 81 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCGTTTGGTGTGAGTTTA+AGG | 0.156297 | 8_3:-56936597 | None:intergenic |
| CATAATCTTGCTATGGAAAA+TGG | 0.159585 | 8_3:+56937039 | Msa1297020:CDS |
| ACACTTTCTCTATCTTTATT+AGG | 0.193995 | 8_3:-56935948 | None:intergenic |
| ATTCCCATTCTTCTATGATT+TGG | 0.243356 | 8_3:-56936370 | None:intergenic |
| ACAGGGACATGATTGGAATT+TGG | 0.275130 | 8_3:-56936307 | None:intergenic |
| TGTGGTGTATTAAGAGATTA+GGG | 0.277467 | 8_3:+56937150 | Msa1297020:CDS |
| GTTCCGAGGGACGGAAAGTA+TGG | 0.278790 | 8_3:+56936721 | Msa1297020:CDS |
| TTCACCATCTTCAACACTTC+TGG | 0.289161 | 8_3:-56936997 | None:intergenic |
| TTGTGGTGTATTAAGAGATT+AGG | 0.337855 | 8_3:+56937149 | Msa1297020:CDS |
| GTGTTTACCCTCGAAGTAAA+AGG | 0.339022 | 8_3:+56936835 | Msa1297020:CDS |
| TTTGGATTTCATCTAATGTA+TGG | 0.345767 | 8_3:+56936958 | Msa1297020:CDS |
| CGTGGGCTTTAGTAAGTGTT+TGG | 0.349245 | 8_3:+56936800 | Msa1297020:CDS |
| GAACAATGGTTTCGTGAAAA+TGG | 0.352645 | 8_3:+56936418 | Msa1297020:CDS |
| TAGGCTAGTTTAGTGAAAAC+AGG | 0.378761 | 8_3:-56936325 | None:intergenic |
| TTGAGACGGTGTTTGAAAAC+GGG | 0.405778 | 8_3:-56936550 | None:intergenic |
| ATAATCTTGCTATGGAAAAT+GGG | 0.419756 | 8_3:+56937040 | Msa1297020:CDS |
| AATGGGAATAGGACTAAAAC+TGG | 0.424053 | 8_3:+56936384 | Msa1297020:CDS |
| TATAGCAATTCAGCGTCGTT+TGG | 0.426241 | 8_3:-56936610 | None:intergenic |
| AATCATAGAAGAATGGGAAT+AGG | 0.430636 | 8_3:+56936373 | Msa1297020:CDS |
| TGTCTTGTGAAGAAGATTTG+TGG | 0.432512 | 8_3:+56937132 | Msa1297020:CDS |
| ATGGGGCCGGATCAGATAAA+TGG | 0.434292 | 8_3:+56936740 | Msa1297020:CDS |
| TTCTCCAAATCATAGAAGAA+TGG | 0.447810 | 8_3:+56936366 | Msa1297020:CDS |
| GCCCCATACTTTCCGTCCCT+CGG | 0.450620 | 8_3:-56936724 | None:intergenic |
| TCTCCAAATCATAGAAGAAT+GGG | 0.453132 | 8_3:+56936367 | Msa1297020:CDS |
| TTTCATCTAATGTATGGAAT+TGG | 0.454495 | 8_3:+56936964 | Msa1297020:CDS |
| AGTGAAAACAGGGACATGAT+TGG | 0.457232 | 8_3:-56936314 | None:intergenic |
| GGAATTTGGTGTTTCTGTGA+TGG | 0.461299 | 8_3:-56936293 | None:intergenic |
| TTTGAGACGGTGTTTGAAAA+CGG | 0.461617 | 8_3:-56936551 | None:intergenic |
| CTTACCAGCATGAGAAAAGT+TGG | 0.464838 | 8_3:-56936068 | None:intergenic |
| TGAGAAAAGTTGGTGAGTTA+CGG | 0.469288 | 8_3:-56936058 | None:intergenic |
| GCCGGACCATTTATCTGATC+CGG | 0.472109 | 8_3:-56936746 | None:intergenic |
| TAATGGACCCACCGAGTTCG+TGG | 0.476344 | 8_3:+56936782 | Msa1297020:CDS |
| CTTTGAGTAACCACATTTGT+CGG | 0.477857 | 8_3:-56936500 | None:intergenic |
| GAGTTTAAGGATTGTTACTT+TGG | 0.478195 | 8_3:-56936584 | None:intergenic |
| CATCTAATGTATGGAATTGG+TGG | 0.508655 | 8_3:+56936967 | Msa1297020:CDS |
| GTCCCTCGGAACGGCTAAGA+AGG | 0.509528 | 8_3:-56936710 | None:intergenic |
| GAAGAGGGAAAGTTTACCAC+TGG | 0.510294 | 8_3:-56936003 | None:intergenic |
| TAACAAGGATTGACGGTGTA+CGG | 0.511747 | 8_3:-56936525 | None:intergenic |
| GCCGGATCAGATAAATGGTC+CGG | 0.513799 | 8_3:+56936745 | Msa1297020:CDS |
| TACATTAGATGAAATCCAAA+CGG | 0.515685 | 8_3:-56936955 | None:intergenic |
| TTCTTAGCCGTTCCGAGGGA+CGG | 0.518034 | 8_3:+56936712 | Msa1297020:CDS |
| TGGAAAATGGGTGTAGTGCT+TGG | 0.525358 | 8_3:+56937052 | Msa1297020:CDS |
| AACTCTTAAGCCTAAAACAT+AGG | 0.527965 | 8_3:-56936344 | None:intergenic |
| ATCTAATGTATGGAATTGGT+GGG | 0.530410 | 8_3:+56936968 | Msa1297020:CDS |
| GTTTGAAAACGGGGTTAACA+AGG | 0.535510 | 8_3:-56936540 | None:intergenic |
| TTCCGAGGGACGGAAAGTAT+GGG | 0.541217 | 8_3:+56936722 | Msa1297020:CDS |
| ACCTTGCAAGTCGGTGAAGA+GGG | 0.550684 | 8_3:-56936018 | None:intergenic |
| GAACCTTCTTAGCCGTTCCG+AGG | 0.552758 | 8_3:+56936707 | Msa1297020:CDS |
| TTGCTAACACACGTCTCACG+CGG | 0.558176 | 8_3:-56936864 | None:intergenic |
| ATGTATGGAATTGGTGGGGA+AGG | 0.560905 | 8_3:+56936973 | Msa1297020:CDS |
| AATGGACCCACCGAGTTCGT+GGG | 0.562123 | 8_3:+56936783 | Msa1297020:CDS |
| AGGACCAGAAGTGTTGAAGA+TGG | 0.565220 | 8_3:+56936993 | Msa1297020:CDS |
| AACCTTCTTAGCCGTTCCGA+GGG | 0.565524 | 8_3:+56936708 | Msa1297020:CDS |
| TCCCTCTTCACCGACTTGCA+AGG | 0.569380 | 8_3:+56936017 | Msa1297020:CDS |
| GAGATAGGCAATGAGACAGT+CGG | 0.571965 | 8_3:+56936205 | Msa1297020:CDS |
| AGGGACGGAAAGTATGGGGC+CGG | 0.579825 | 8_3:+56936727 | Msa1297020:CDS |
| CACCTTGCAAGTCGGTGAAG+AGG | 0.582711 | 8_3:-56936019 | None:intergenic |
| TGATAGACAAGGCTTTACCT+TGG | 0.583323 | 8_3:+56936899 | Msa1297020:CDS |
| CTTACTAAAGCCCACGAACT+CGG | 0.584602 | 8_3:-56936793 | None:intergenic |
| TGGTGCTGAGTATTCATACA+TGG | 0.597000 | 8_3:+56936438 | Msa1297020:CDS |
| ACGGGGTTAACAAGGATTGA+CGG | 0.599326 | 8_3:-56936532 | None:intergenic |
| TGCTAACACACGTCTCACGC+GGG | 0.608765 | 8_3:-56936863 | None:intergenic |
| TCCGAGGGACGGAAAGTATG+GGG | 0.616666 | 8_3:+56936723 | Msa1297020:CDS |
| ATACTTTCCGTCCCTCGGAA+CGG | 0.629912 | 8_3:-56936719 | None:intergenic |
| CTAAAGCCCACGAACTCGGT+GGG | 0.630773 | 8_3:-56936789 | None:intergenic |
| ATATGTGAAGTTGGACCCAG+TGG | 0.635969 | 8_3:+56935987 | Msa1297020:CDS |
| AACAACTCGCGTGATAGACA+AGG | 0.641023 | 8_3:+56936888 | Msa1297020:CDS |
| TCTAATGTATGGAATTGGTG+GGG | 0.644769 | 8_3:+56936969 | Msa1297020:CDS |
| TGAGACGGTGTTTGAAAACG+GGG | 0.645003 | 8_3:-56936549 | None:intergenic |
| AAGAGGGAAAGTTTACCACT+GGG | 0.649201 | 8_3:-56936002 | None:intergenic |
| ACTAAAGCCCACGAACTCGG+TGG | 0.653999 | 8_3:-56936790 | None:intergenic |
| AAGATGGTGAAAGCTTTGTG+TGG | 0.659803 | 8_3:+56937009 | Msa1297020:CDS |
| CAAGACAAAACCTTCCAATG+AGG | 0.667319 | 8_3:-56937116 | None:intergenic |
| AATAGCGTCACCTTGCAAGT+CGG | 0.667497 | 8_3:-56936027 | None:intergenic |
| AGGCTAGTTTAGTGAAAACA+GGG | 0.668200 | 8_3:-56936324 | None:intergenic |
| CAGTGGTGGAGAATTTGTAA+CGG | 0.668778 | 8_3:-56936633 | None:intergenic |
| TGAGGAATAGCAAAACGTAA+CGG | 0.672089 | 8_3:-56937098 | None:intergenic |
| TGTATCAAAACCGTTACATG+CGG | 0.691594 | 8_3:+56936241 | Msa1297020:CDS |
| AAAACAGAATCAATGTCACG+AGG | 0.691646 | 8_3:-56936664 | None:intergenic |
| GTGGTGTATTAAGAGATTAG+GGG | 0.708222 | 8_3:+56937151 | Msa1297020:CDS |
| GAGACAGTCGGAATGATACG+AGG | 0.713167 | 8_3:+56936217 | Msa1297020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAAATAACAAAGTT+AGG | - | chr8_3:56936176-56936195 | None:intergenic | 10.0% |
| !! | AAAATTAAAATAACAAAGTT+AGG | - | chr8_3:56936176-56936195 | None:intergenic | 10.0% |
| !!! | ATTATTATAGTATATGGTTT+TGG | - | chr8_3:56936108-56936127 | None:intergenic | 15.0% |
| !! | TGATACATTATTATAGTATA+TGG | - | chr8_3:56936114-56936133 | None:intergenic | 15.0% |
| !!! | ACTTTGTTATTTTAATTTTC+AGG | + | chr8_3:56936177-56936196 | Msa1297020:intron | 15.0% |
| !!! | ATTATTATAGTATATGGTTT+TGG | - | chr8_3:56936108-56936127 | None:intergenic | 15.0% |
| !! | TGATACATTATTATAGTATA+TGG | - | chr8_3:56936114-56936133 | None:intergenic | 15.0% |
| !!! | ACTTTGTTATTTTAATTTTC+AGG | + | chr8_3:56936177-56936196 | Msa1297020:intron | 15.0% |
| !! | AAAATAACAAAGTTAGGATT+AGG | - | chr8_3:56936170-56936189 | None:intergenic | 20.0% |
| !! | TTAAAAAACAAACTTACTCT+TGG | + | chr8_3:56936685-56936704 | Msa1297020:CDS | 20.0% |
| !! | AAAATAACAAAGTTAGGATT+AGG | - | chr8_3:56936170-56936189 | None:intergenic | 20.0% |
| !! | TTAAAAAACAAACTTACTCT+TGG | + | chr8_3:56936685-56936704 | Msa1297020:CDS | 20.0% |
| ! | ACACTTTCTCTATCTTTATT+AGG | - | chr8_3:56935951-56935970 | None:intergenic | 25.0% |
| ! | GTTGAAAAAATATGTGAAGT+TGG | + | chr8_3:56935978-56935997 | Msa1297020:CDS | 25.0% |
| ! | ACTAAAACTGGTAGAAAAAA+TGG | + | chr8_3:56936396-56936415 | Msa1297020:CDS | 25.0% |
| ! | TTGAAAAAATTAGGAATCGA+AGG | - | chr8_3:56936934-56936953 | None:intergenic | 25.0% |
| ! | TACATTAGATGAAATCCAAA+CGG | - | chr8_3:56936958-56936977 | None:intergenic | 25.0% |
| ! | TTTGGATTTCATCTAATGTA+TGG | + | chr8_3:56936958-56936977 | Msa1297020:CDS | 25.0% |
| ! | TTTCATCTAATGTATGGAAT+TGG | + | chr8_3:56936964-56936983 | Msa1297020:CDS | 25.0% |
| !! | ATAATCTTGCTATGGAAAAT+GGG | + | chr8_3:56937040-56937059 | Msa1297020:CDS | 25.0% |
| ! | ACACTTTCTCTATCTTTATT+AGG | - | chr8_3:56935951-56935970 | None:intergenic | 25.0% |
| ! | GTTGAAAAAATATGTGAAGT+TGG | + | chr8_3:56935978-56935997 | Msa1297020:CDS | 25.0% |
| ! | ACTAAAACTGGTAGAAAAAA+TGG | + | chr8_3:56936396-56936415 | Msa1297020:CDS | 25.0% |
| ! | TTGAAAAAATTAGGAATCGA+AGG | - | chr8_3:56936934-56936953 | None:intergenic | 25.0% |
| ! | TACATTAGATGAAATCCAAA+CGG | - | chr8_3:56936958-56936977 | None:intergenic | 25.0% |
| ! | TTTGGATTTCATCTAATGTA+TGG | + | chr8_3:56936958-56936977 | Msa1297020:CDS | 25.0% |
| ! | TTTCATCTAATGTATGGAAT+TGG | + | chr8_3:56936964-56936983 | Msa1297020:CDS | 25.0% |
| !! | ATAATCTTGCTATGGAAAAT+GGG | + | chr8_3:56937040-56937059 | Msa1297020:CDS | 25.0% |
| !! | ACTAAACTAGCCTATGTTTT+AGG | + | chr8_3:56936334-56936353 | Msa1297020:CDS | 30.0% |
| AACTCTTAAGCCTAAAACAT+AGG | - | chr8_3:56936347-56936366 | None:intergenic | 30.0% | |
| TTCTCCAAATCATAGAAGAA+TGG | + | chr8_3:56936366-56936385 | Msa1297020:CDS | 30.0% | |
| TCTCCAAATCATAGAAGAAT+GGG | + | chr8_3:56936367-56936386 | Msa1297020:CDS | 30.0% | |
| ATTCCCATTCTTCTATGATT+TGG | - | chr8_3:56936373-56936392 | None:intergenic | 30.0% | |
| AATCATAGAAGAATGGGAAT+AGG | + | chr8_3:56936373-56936392 | Msa1297020:CDS | 30.0% | |
| TGGTAGAAAAAATGGAACAA+TGG | + | chr8_3:56936404-56936423 | Msa1297020:CDS | 30.0% | |
| ! | GAGTTTAAGGATTGTTACTT+TGG | - | chr8_3:56936587-56936606 | None:intergenic | 30.0% |
| !! | ATCGAAGGTAATTTTAACCA+AGG | - | chr8_3:56936919-56936938 | None:intergenic | 30.0% |
| CCAAACGGTTTGAAAAAATT+AGG | - | chr8_3:56936943-56936962 | None:intergenic | 30.0% | |
| !!! | CCTAATTTTTTCAAACCGTT+TGG | + | chr8_3:56936940-56936959 | Msa1297020:CDS | 30.0% |
| ATCTAATGTATGGAATTGGT+GGG | + | chr8_3:56936968-56936987 | Msa1297020:CDS | 30.0% | |
| ! | TTTTGCTCATAATCTTGCTA+TGG | + | chr8_3:56937032-56937051 | Msa1297020:CDS | 30.0% |
| ! | CATAATCTTGCTATGGAAAA+TGG | + | chr8_3:56937039-56937058 | Msa1297020:CDS | 30.0% |
| !! | ACTAAACTAGCCTATGTTTT+AGG | + | chr8_3:56936334-56936353 | Msa1297020:CDS | 30.0% |
| AACTCTTAAGCCTAAAACAT+AGG | - | chr8_3:56936347-56936366 | None:intergenic | 30.0% | |
| TTCTCCAAATCATAGAAGAA+TGG | + | chr8_3:56936366-56936385 | Msa1297020:CDS | 30.0% | |
| TCTCCAAATCATAGAAGAAT+GGG | + | chr8_3:56936367-56936386 | Msa1297020:CDS | 30.0% | |
| ATTCCCATTCTTCTATGATT+TGG | - | chr8_3:56936373-56936392 | None:intergenic | 30.0% | |
| AATCATAGAAGAATGGGAAT+AGG | + | chr8_3:56936373-56936392 | Msa1297020:CDS | 30.0% | |
| TGGTAGAAAAAATGGAACAA+TGG | + | chr8_3:56936404-56936423 | Msa1297020:CDS | 30.0% | |
| ! | GAGTTTAAGGATTGTTACTT+TGG | - | chr8_3:56936587-56936606 | None:intergenic | 30.0% |
| !! | ATCGAAGGTAATTTTAACCA+AGG | - | chr8_3:56936919-56936938 | None:intergenic | 30.0% |
| CCAAACGGTTTGAAAAAATT+AGG | - | chr8_3:56936943-56936962 | None:intergenic | 30.0% | |
| !!! | CCTAATTTTTTCAAACCGTT+TGG | + | chr8_3:56936940-56936959 | Msa1297020:CDS | 30.0% |
| ATCTAATGTATGGAATTGGT+GGG | + | chr8_3:56936968-56936987 | Msa1297020:CDS | 30.0% | |
| ! | TTTTGCTCATAATCTTGCTA+TGG | + | chr8_3:56937032-56937051 | Msa1297020:CDS | 30.0% |
| ! | CATAATCTTGCTATGGAAAA+TGG | + | chr8_3:56937039-56937058 | Msa1297020:CDS | 30.0% |
| !! | TGAGAAAAGTTGGTGAGTTA+CGG | - | chr8_3:56936061-56936080 | None:intergenic | 35.0% |
| !!! | AATTTTCAGGTAGCAGAGAT+AGG | + | chr8_3:56936190-56936209 | Msa1297020:intron | 35.0% |
| TGTATCAAAACCGTTACATG+CGG | + | chr8_3:56936241-56936260 | Msa1297020:CDS | 35.0% | |
| !!! | TCTGTGATGGTGTTTTTTGT+TGG | - | chr8_3:56936283-56936302 | None:intergenic | 35.0% |
| !! | AGGCTAGTTTAGTGAAAACA+GGG | - | chr8_3:56936327-56936346 | None:intergenic | 35.0% |
| !! | TAGGCTAGTTTAGTGAAAAC+AGG | - | chr8_3:56936328-56936347 | None:intergenic | 35.0% |
| AATGGGAATAGGACTAAAAC+TGG | + | chr8_3:56936384-56936403 | Msa1297020:CDS | 35.0% | |
| GAACAATGGTTTCGTGAAAA+TGG | + | chr8_3:56936418-56936437 | Msa1297020:CDS | 35.0% | |
| ! | AAACTTTTCACCGACAAATG+TGG | + | chr8_3:56936490-56936509 | Msa1297020:CDS | 35.0% |
| CTTTGAGTAACCACATTTGT+CGG | - | chr8_3:56936503-56936522 | None:intergenic | 35.0% | |
| ! | TTTGAGACGGTGTTTGAAAA+CGG | - | chr8_3:56936554-56936573 | None:intergenic | 35.0% |
| AAAACAGAATCAATGTCACG+AGG | - | chr8_3:56936667-56936686 | None:intergenic | 35.0% | |
| TGGGTCCATTAAAAAGCTTT+CGG | - | chr8_3:56936773-56936792 | None:intergenic | 35.0% | |
| CATCTAATGTATGGAATTGG+TGG | + | chr8_3:56936967-56936986 | Msa1297020:CDS | 35.0% | |
| TCTAATGTATGGAATTGGTG+GGG | + | chr8_3:56936969-56936988 | Msa1297020:CDS | 35.0% | |
| TGAGGAATAGCAAAACGTAA+CGG | - | chr8_3:56937101-56937120 | None:intergenic | 35.0% | |
| !!! | TACGTTTTGCTATTCCTCAT+TGG | + | chr8_3:56937102-56937121 | Msa1297020:CDS | 35.0% |
| !!! | TTTTGCTATTCCTCATTGGA+AGG | + | chr8_3:56937106-56937125 | Msa1297020:CDS | 35.0% |
| TGTCTTGTGAAGAAGATTTG+TGG | + | chr8_3:56937132-56937151 | Msa1297020:CDS | 35.0% | |
| !! | TGAGAAAAGTTGGTGAGTTA+CGG | - | chr8_3:56936061-56936080 | None:intergenic | 35.0% |
| !!! | AATTTTCAGGTAGCAGAGAT+AGG | + | chr8_3:56936190-56936209 | Msa1297020:intron | 35.0% |
| TGTATCAAAACCGTTACATG+CGG | + | chr8_3:56936241-56936260 | Msa1297020:CDS | 35.0% | |
| !!! | TCTGTGATGGTGTTTTTTGT+TGG | - | chr8_3:56936283-56936302 | None:intergenic | 35.0% |
| !! | AGGCTAGTTTAGTGAAAACA+GGG | - | chr8_3:56936327-56936346 | None:intergenic | 35.0% |
| !! | TAGGCTAGTTTAGTGAAAAC+AGG | - | chr8_3:56936328-56936347 | None:intergenic | 35.0% |
| AATGGGAATAGGACTAAAAC+TGG | + | chr8_3:56936384-56936403 | Msa1297020:CDS | 35.0% | |
| GAACAATGGTTTCGTGAAAA+TGG | + | chr8_3:56936418-56936437 | Msa1297020:CDS | 35.0% | |
| ! | AAACTTTTCACCGACAAATG+TGG | + | chr8_3:56936490-56936509 | Msa1297020:CDS | 35.0% |
| CTTTGAGTAACCACATTTGT+CGG | - | chr8_3:56936503-56936522 | None:intergenic | 35.0% | |
| ! | TTTGAGACGGTGTTTGAAAA+CGG | - | chr8_3:56936554-56936573 | None:intergenic | 35.0% |
| AAAACAGAATCAATGTCACG+AGG | - | chr8_3:56936667-56936686 | None:intergenic | 35.0% | |
| TGGGTCCATTAAAAAGCTTT+CGG | - | chr8_3:56936773-56936792 | None:intergenic | 35.0% | |
| CATCTAATGTATGGAATTGG+TGG | + | chr8_3:56936967-56936986 | Msa1297020:CDS | 35.0% | |
| TCTAATGTATGGAATTGGTG+GGG | + | chr8_3:56936969-56936988 | Msa1297020:CDS | 35.0% | |
| TGAGGAATAGCAAAACGTAA+CGG | - | chr8_3:56937101-56937120 | None:intergenic | 35.0% | |
| !!! | TACGTTTTGCTATTCCTCAT+TGG | + | chr8_3:56937102-56937121 | Msa1297020:CDS | 35.0% |
| !!! | TTTTGCTATTCCTCATTGGA+AGG | + | chr8_3:56937106-56937125 | Msa1297020:CDS | 35.0% |
| TGTCTTGTGAAGAAGATTTG+TGG | + | chr8_3:56937132-56937151 | Msa1297020:CDS | 35.0% | |
| AAGAGGGAAAGTTTACCACT+GGG | - | chr8_3:56936005-56936024 | None:intergenic | 40.0% | |
| CTTACCAGCATGAGAAAAGT+TGG | - | chr8_3:56936071-56936090 | None:intergenic | 40.0% | |
| !!! | GAGTTTTTTGCCGCATGTAA+CGG | - | chr8_3:56936254-56936273 | None:intergenic | 40.0% |
| !! | GGAATTTGGTGTTTCTGTGA+TGG | - | chr8_3:56936296-56936315 | None:intergenic | 40.0% |
| ACAGGGACATGATTGGAATT+TGG | - | chr8_3:56936310-56936329 | None:intergenic | 40.0% | |
| AGTGAAAACAGGGACATGAT+TGG | - | chr8_3:56936317-56936336 | None:intergenic | 40.0% | |
| ! | TGGTGCTGAGTATTCATACA+TGG | + | chr8_3:56936438-56936457 | Msa1297020:CDS | 40.0% |
| TAACAAGGATTGACGGTGTA+CGG | - | chr8_3:56936528-56936547 | None:intergenic | 40.0% | |
| GTTTGAAAACGGGGTTAACA+AGG | - | chr8_3:56936543-56936562 | None:intergenic | 40.0% | |
| TTGAGACGGTGTTTGAAAAC+GGG | - | chr8_3:56936553-56936572 | None:intergenic | 40.0% | |
| !!! | TGGACGATGATGTTTTGAGA+CGG | - | chr8_3:56936567-56936586 | None:intergenic | 40.0% |
| TATAGCAATTCAGCGTCGTT+TGG | - | chr8_3:56936613-56936632 | None:intergenic | 40.0% | |
| ! | CAGTGGTGGAGAATTTGTAA+CGG | - | chr8_3:56936636-56936655 | None:intergenic | 40.0% |
| CATTAAAAAGCTTTCGGAGC+CGG | - | chr8_3:56936767-56936786 | None:intergenic | 40.0% | |
| GTGTTTACCCTCGAAGTAAA+AGG | + | chr8_3:56936835-56936854 | Msa1297020:CDS | 40.0% | |
| TGATAGACAAGGCTTTACCT+TGG | + | chr8_3:56936899-56936918 | Msa1297020:CDS | 40.0% | |
| TTCACCATCTTCAACACTTC+TGG | - | chr8_3:56937000-56937019 | None:intergenic | 40.0% | |
| ! | AAGATGGTGAAAGCTTTGTG+TGG | + | chr8_3:56937009-56937028 | Msa1297020:CDS | 40.0% |
| CAAGACAAAACCTTCCAATG+AGG | - | chr8_3:56937119-56937138 | None:intergenic | 40.0% | |
| AAGAGGGAAAGTTTACCACT+GGG | - | chr8_3:56936005-56936024 | None:intergenic | 40.0% | |
| CTTACCAGCATGAGAAAAGT+TGG | - | chr8_3:56936071-56936090 | None:intergenic | 40.0% | |
| !!! | GAGTTTTTTGCCGCATGTAA+CGG | - | chr8_3:56936254-56936273 | None:intergenic | 40.0% |
| !! | GGAATTTGGTGTTTCTGTGA+TGG | - | chr8_3:56936296-56936315 | None:intergenic | 40.0% |
| ACAGGGACATGATTGGAATT+TGG | - | chr8_3:56936310-56936329 | None:intergenic | 40.0% | |
| AGTGAAAACAGGGACATGAT+TGG | - | chr8_3:56936317-56936336 | None:intergenic | 40.0% | |
| ! | TGGTGCTGAGTATTCATACA+TGG | + | chr8_3:56936438-56936457 | Msa1297020:CDS | 40.0% |
| TAACAAGGATTGACGGTGTA+CGG | - | chr8_3:56936528-56936547 | None:intergenic | 40.0% | |
| GTTTGAAAACGGGGTTAACA+AGG | - | chr8_3:56936543-56936562 | None:intergenic | 40.0% | |
| TTGAGACGGTGTTTGAAAAC+GGG | - | chr8_3:56936553-56936572 | None:intergenic | 40.0% | |
| !!! | TGGACGATGATGTTTTGAGA+CGG | - | chr8_3:56936567-56936586 | None:intergenic | 40.0% |
| TATAGCAATTCAGCGTCGTT+TGG | - | chr8_3:56936613-56936632 | None:intergenic | 40.0% | |
| ! | CAGTGGTGGAGAATTTGTAA+CGG | - | chr8_3:56936636-56936655 | None:intergenic | 40.0% |
| CATTAAAAAGCTTTCGGAGC+CGG | - | chr8_3:56936767-56936786 | None:intergenic | 40.0% | |
| GTGTTTACCCTCGAAGTAAA+AGG | + | chr8_3:56936835-56936854 | Msa1297020:CDS | 40.0% | |
| TGATAGACAAGGCTTTACCT+TGG | + | chr8_3:56936899-56936918 | Msa1297020:CDS | 40.0% | |
| TTCACCATCTTCAACACTTC+TGG | - | chr8_3:56937000-56937019 | None:intergenic | 40.0% | |
| ! | AAGATGGTGAAAGCTTTGTG+TGG | + | chr8_3:56937009-56937028 | Msa1297020:CDS | 40.0% |
| CAAGACAAAACCTTCCAATG+AGG | - | chr8_3:56937119-56937138 | None:intergenic | 40.0% | |
| ATATGTGAAGTTGGACCCAG+TGG | + | chr8_3:56935987-56936006 | Msa1297020:CDS | 45.0% | |
| GAAGAGGGAAAGTTTACCAC+TGG | - | chr8_3:56936006-56936025 | None:intergenic | 45.0% | |
| AATAGCGTCACCTTGCAAGT+CGG | - | chr8_3:56936030-56936049 | None:intergenic | 45.0% | |
| ! | CTCACCAACTTTTCTCATGC+TGG | + | chr8_3:56936064-56936083 | Msa1297020:CDS | 45.0% |
| GAGATAGGCAATGAGACAGT+CGG | + | chr8_3:56936205-56936224 | Msa1297020:CDS | 45.0% | |
| ACGGGGTTAACAAGGATTGA+CGG | - | chr8_3:56936535-56936554 | None:intergenic | 45.0% | |
| TGAGACGGTGTTTGAAAACG+GGG | - | chr8_3:56936552-56936571 | None:intergenic | 45.0% | |
| !! | CGTCGTTTGGTGTGAGTTTA+AGG | - | chr8_3:56936600-56936619 | None:intergenic | 45.0% |
| ACGAGGAAAAAACTCAGTGG+TGG | - | chr8_3:56936650-56936669 | None:intergenic | 45.0% | |
| GTCACGAGGAAAAAACTCAG+TGG | - | chr8_3:56936653-56936672 | None:intergenic | 45.0% | |
| ! | CGGCTCCGAAAGCTTTTTAA+TGG | + | chr8_3:56936765-56936784 | Msa1297020:CDS | 45.0% |
| CTTACTAAAGCCCACGAACT+CGG | - | chr8_3:56936796-56936815 | None:intergenic | 45.0% | |
| ! | CGTGGGCTTTAGTAAGTGTT+TGG | + | chr8_3:56936800-56936819 | Msa1297020:CDS | 45.0% |
| AACAACTCGCGTGATAGACA+AGG | + | chr8_3:56936888-56936907 | Msa1297020:CDS | 45.0% | |
| ATGTATGGAATTGGTGGGGA+AGG | + | chr8_3:56936973-56936992 | Msa1297020:CDS | 45.0% | |
| !! | AGGACCAGAAGTGTTGAAGA+TGG | + | chr8_3:56936993-56937012 | Msa1297020:CDS | 45.0% |
| TGGAAAATGGGTGTAGTGCT+TGG | + | chr8_3:56937052-56937071 | Msa1297020:CDS | 45.0% | |
| ATATGTGAAGTTGGACCCAG+TGG | + | chr8_3:56935987-56936006 | Msa1297020:CDS | 45.0% | |
| GAAGAGGGAAAGTTTACCAC+TGG | - | chr8_3:56936006-56936025 | None:intergenic | 45.0% | |
| AATAGCGTCACCTTGCAAGT+CGG | - | chr8_3:56936030-56936049 | None:intergenic | 45.0% | |
| ! | CTCACCAACTTTTCTCATGC+TGG | + | chr8_3:56936064-56936083 | Msa1297020:CDS | 45.0% |
| GAGATAGGCAATGAGACAGT+CGG | + | chr8_3:56936205-56936224 | Msa1297020:CDS | 45.0% | |
| ACGGGGTTAACAAGGATTGA+CGG | - | chr8_3:56936535-56936554 | None:intergenic | 45.0% | |
| TGAGACGGTGTTTGAAAACG+GGG | - | chr8_3:56936552-56936571 | None:intergenic | 45.0% | |
| !! | CGTCGTTTGGTGTGAGTTTA+AGG | - | chr8_3:56936600-56936619 | None:intergenic | 45.0% |
| ACGAGGAAAAAACTCAGTGG+TGG | - | chr8_3:56936650-56936669 | None:intergenic | 45.0% | |
| GTCACGAGGAAAAAACTCAG+TGG | - | chr8_3:56936653-56936672 | None:intergenic | 45.0% | |
| ! | CGGCTCCGAAAGCTTTTTAA+TGG | + | chr8_3:56936765-56936784 | Msa1297020:CDS | 45.0% |
| CTTACTAAAGCCCACGAACT+CGG | - | chr8_3:56936796-56936815 | None:intergenic | 45.0% | |
| ! | CGTGGGCTTTAGTAAGTGTT+TGG | + | chr8_3:56936800-56936819 | Msa1297020:CDS | 45.0% |
| AACAACTCGCGTGATAGACA+AGG | + | chr8_3:56936888-56936907 | Msa1297020:CDS | 45.0% | |
| ATGTATGGAATTGGTGGGGA+AGG | + | chr8_3:56936973-56936992 | Msa1297020:CDS | 45.0% | |
| !! | AGGACCAGAAGTGTTGAAGA+TGG | + | chr8_3:56936993-56937012 | Msa1297020:CDS | 45.0% |
| TGGAAAATGGGTGTAGTGCT+TGG | + | chr8_3:56937052-56937071 | Msa1297020:CDS | 45.0% | |
| ACCTTGCAAGTCGGTGAAGA+GGG | - | chr8_3:56936021-56936040 | None:intergenic | 50.0% | |
| GAGACAGTCGGAATGATACG+AGG | + | chr8_3:56936217-56936236 | Msa1297020:CDS | 50.0% | |
| AACCTTCTTAGCCGTTCCGA+GGG | + | chr8_3:56936708-56936727 | Msa1297020:CDS | 50.0% | |
| ATACTTTCCGTCCCTCGGAA+CGG | - | chr8_3:56936722-56936741 | None:intergenic | 50.0% | |
| ! | TTCCGAGGGACGGAAAGTAT+GGG | + | chr8_3:56936722-56936741 | Msa1297020:CDS | 50.0% |
| ATGGGGCCGGATCAGATAAA+TGG | + | chr8_3:56936740-56936759 | Msa1297020:CDS | 50.0% | |
| GCCGGATCAGATAAATGGTC+CGG | + | chr8_3:56936745-56936764 | Msa1297020:CDS | 50.0% | |
| GCCGGACCATTTATCTGATC+CGG | - | chr8_3:56936749-56936768 | None:intergenic | 50.0% | |
| TTGCTAACACACGTCTCACG+CGG | - | chr8_3:56936867-56936886 | None:intergenic | 50.0% | |
| ACCTTGCAAGTCGGTGAAGA+GGG | - | chr8_3:56936021-56936040 | None:intergenic | 50.0% | |
| GAGACAGTCGGAATGATACG+AGG | + | chr8_3:56936217-56936236 | Msa1297020:CDS | 50.0% | |
| AACCTTCTTAGCCGTTCCGA+GGG | + | chr8_3:56936708-56936727 | Msa1297020:CDS | 50.0% | |
| ATACTTTCCGTCCCTCGGAA+CGG | - | chr8_3:56936722-56936741 | None:intergenic | 50.0% | |
| ! | TTCCGAGGGACGGAAAGTAT+GGG | + | chr8_3:56936722-56936741 | Msa1297020:CDS | 50.0% |
| ATGGGGCCGGATCAGATAAA+TGG | + | chr8_3:56936740-56936759 | Msa1297020:CDS | 50.0% | |
| GCCGGATCAGATAAATGGTC+CGG | + | chr8_3:56936745-56936764 | Msa1297020:CDS | 50.0% | |
| GCCGGACCATTTATCTGATC+CGG | - | chr8_3:56936749-56936768 | None:intergenic | 50.0% | |
| TTGCTAACACACGTCTCACG+CGG | - | chr8_3:56936867-56936886 | None:intergenic | 50.0% | |
| !! | TCCCTCTTCACCGACTTGCA+AGG | + | chr8_3:56936017-56936036 | Msa1297020:CDS | 55.0% |
| CACCTTGCAAGTCGGTGAAG+AGG | - | chr8_3:56936022-56936041 | None:intergenic | 55.0% | |
| GAACCTTCTTAGCCGTTCCG+AGG | + | chr8_3:56936707-56936726 | Msa1297020:CDS | 55.0% | |
| TTCTTAGCCGTTCCGAGGGA+CGG | + | chr8_3:56936712-56936731 | Msa1297020:CDS | 55.0% | |
| GTTCCGAGGGACGGAAAGTA+TGG | + | chr8_3:56936721-56936740 | Msa1297020:CDS | 55.0% | |
| ! | TCCGAGGGACGGAAAGTATG+GGG | + | chr8_3:56936723-56936742 | Msa1297020:CDS | 55.0% |
| ! | TAATGGACCCACCGAGTTCG+TGG | + | chr8_3:56936782-56936801 | Msa1297020:CDS | 55.0% |
| AATGGACCCACCGAGTTCGT+GGG | + | chr8_3:56936783-56936802 | Msa1297020:CDS | 55.0% | |
| CTAAAGCCCACGAACTCGGT+GGG | - | chr8_3:56936792-56936811 | None:intergenic | 55.0% | |
| ACTAAAGCCCACGAACTCGG+TGG | - | chr8_3:56936793-56936812 | None:intergenic | 55.0% | |
| ! | GGACGCGCCTTTTACTTCGA+GGG | - | chr8_3:56936845-56936864 | None:intergenic | 55.0% |
| TGCTAACACACGTCTCACGC+GGG | - | chr8_3:56936866-56936885 | None:intergenic | 55.0% | |
| !! | TCCCTCTTCACCGACTTGCA+AGG | + | chr8_3:56936017-56936036 | Msa1297020:CDS | 55.0% |
| CACCTTGCAAGTCGGTGAAG+AGG | - | chr8_3:56936022-56936041 | None:intergenic | 55.0% | |
| GAACCTTCTTAGCCGTTCCG+AGG | + | chr8_3:56936707-56936726 | Msa1297020:CDS | 55.0% | |
| TTCTTAGCCGTTCCGAGGGA+CGG | + | chr8_3:56936712-56936731 | Msa1297020:CDS | 55.0% | |
| GTTCCGAGGGACGGAAAGTA+TGG | + | chr8_3:56936721-56936740 | Msa1297020:CDS | 55.0% | |
| ! | TCCGAGGGACGGAAAGTATG+GGG | + | chr8_3:56936723-56936742 | Msa1297020:CDS | 55.0% |
| ! | TAATGGACCCACCGAGTTCG+TGG | + | chr8_3:56936782-56936801 | Msa1297020:CDS | 55.0% |
| AATGGACCCACCGAGTTCGT+GGG | + | chr8_3:56936783-56936802 | Msa1297020:CDS | 55.0% | |
| CTAAAGCCCACGAACTCGGT+GGG | - | chr8_3:56936792-56936811 | None:intergenic | 55.0% | |
| ACTAAAGCCCACGAACTCGG+TGG | - | chr8_3:56936793-56936812 | None:intergenic | 55.0% | |
| ! | GGACGCGCCTTTTACTTCGA+GGG | - | chr8_3:56936845-56936864 | None:intergenic | 55.0% |
| TGCTAACACACGTCTCACGC+GGG | - | chr8_3:56936866-56936885 | None:intergenic | 55.0% | |
| GTCCCTCGGAACGGCTAAGA+AGG | - | chr8_3:56936713-56936732 | None:intergenic | 60.0% | |
| GCCCCATACTTTCCGTCCCT+CGG | - | chr8_3:56936727-56936746 | None:intergenic | 60.0% | |
| ! | AGGGACGGAAAGTATGGGGC+CGG | + | chr8_3:56936727-56936746 | Msa1297020:CDS | 60.0% |
| ! | GGGACGCGCCTTTTACTTCG+AGG | - | chr8_3:56936846-56936865 | None:intergenic | 60.0% |
| GTCCCTCGGAACGGCTAAGA+AGG | - | chr8_3:56936713-56936732 | None:intergenic | 60.0% | |
| GCCCCATACTTTCCGTCCCT+CGG | - | chr8_3:56936727-56936746 | None:intergenic | 60.0% | |
| ! | AGGGACGGAAAGTATGGGGC+CGG | + | chr8_3:56936727-56936746 | Msa1297020:CDS | 60.0% |
| ! | GGGACGCGCCTTTTACTTCG+AGG | - | chr8_3:56936846-56936865 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 56935912 | 56937170 | 56935912 | ID=Msa1297020;Name=Msa1297020 |
| chr8_3 | mRNA | 56935912 | 56937170 | 56935912 | ID=Msa1297020-mRNA-1;Parent=Msa1297020;Name=Msa1297020-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|381 |
| chr8_3 | exon | 56935912 | 56936085 | 56935912 | ID=Msa1297020-mRNA-1:exon:16315;Parent=Msa1297020-mRNA-1 |
| chr8_3 | exon | 56936199 | 56937170 | 56936199 | ID=Msa1297020-mRNA-1:exon:16316;Parent=Msa1297020-mRNA-1 |
| chr8_3 | CDS | 56935912 | 56936085 | 56935912 | ID=Msa1297020-mRNA-1:cds;Parent=Msa1297020-mRNA-1 |
| chr8_3 | CDS | 56936199 | 56937170 | 56936199 | ID=Msa1297020-mRNA-1:cds;Parent=Msa1297020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
