Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330770 | sp|O64815|HLS1L_ARATH | 70.250 | 400 | 107 | 4 | 3 | 394 | 18 | 413 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330770 | A0A072UQ97 | 95.939 | 394 | 16 | 0 | 1 | 394 | 18 | 411 | 0.0 | 781 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1330770 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1297020 | Msa1330770 | 0.889118 | 3.223057e-73 | -8.615850e-47 |
| Msa1330770 | Msa1407300 | 0.955156 | 5.795527e-113 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330770 | MtrunA17_Chr4g0053961 | 95.939 | 394 | 16 | 0 | 1 | 394 | 18 | 411 | 0.0 | 781 |
| Msa1330770 | MtrunA17_Chr5g0401351 | 71.320 | 394 | 103 | 5 | 1 | 394 | 20 | 403 | 0.0 | 590 |
| Msa1330770 | MtrunA17_Chr4g0001411 | 47.537 | 406 | 165 | 9 | 4 | 394 | 37 | 409 | 9.31e-120 | 353 |
| Msa1330770 | MtrunA17_Chr3g0105631 | 48.615 | 397 | 173 | 7 | 1 | 393 | 18 | 387 | 5.42e-119 | 350 |
| Msa1330770 | MtrunA17_Chr4g0068331 | 33.252 | 409 | 229 | 13 | 4 | 394 | 25 | 407 | 1.58e-57 | 193 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330770 | AT2G23060.1 | 70.250 | 400 | 107 | 4 | 3 | 394 | 18 | 413 | 0.0 | 572 |
| Msa1330770 | AT4G37580.1 | 71.320 | 394 | 104 | 3 | 4 | 394 | 16 | 403 | 0.0 | 557 |
| Msa1330770 | AT4G37580.2 | 71.387 | 346 | 93 | 2 | 49 | 394 | 7 | 346 | 2.41e-175 | 492 |
| Msa1330770 | AT5G67430.1 | 61.735 | 392 | 124 | 8 | 3 | 394 | 21 | 386 | 1.27e-165 | 469 |
| Msa1330770 | AT2G23060.2 | 73.214 | 280 | 74 | 1 | 115 | 394 | 1 | 279 | 9.21e-153 | 432 |
| Msa1330770 | AT5G67430.2 | 62.170 | 341 | 108 | 7 | 53 | 393 | 1 | 320 | 1.32e-144 | 414 |
| Msa1330770 | AT2G30090.1 | 41.646 | 401 | 187 | 7 | 1 | 393 | 24 | 385 | 4.28e-95 | 290 |
Find 83 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCGTTTGGTGTGAGTTTA+AGG | 0.156297 | 8_4:-50018962 | None:intergenic |
| CATAATCTTGCTATGGAAAA+TGG | 0.159585 | 8_4:+50019404 | Msa1330770:CDS |
| ATTCCCATTCTTCTATGATT+TGG | 0.243356 | 8_4:-50018735 | None:intergenic |
| GTTCCGAGAGACGGAAAATA+TGG | 0.259285 | 8_4:+50019086 | Msa1330770:CDS |
| ACAGGGACATGATTGGAATT+TGG | 0.275130 | 8_4:-50018672 | None:intergenic |
| TGTGGTGTATTAAGAGATTA+GGG | 0.277467 | 8_4:+50019516 | Msa1330770:CDS |
| TTCACCATCTTCAACACTTC+TGG | 0.289161 | 8_4:-50019362 | None:intergenic |
| TTGTGGTGTATTAAGAGATT+AGG | 0.337855 | 8_4:+50019515 | Msa1330770:CDS |
| GTGTTTACCCTCGAAGTAAA+AGG | 0.339022 | 8_4:+50019200 | Msa1330770:CDS |
| TTTGGATTTCATCTAATGTA+TGG | 0.345767 | 8_4:+50019323 | Msa1330770:CDS |
| CGTGGGCTTTAGTAAGTGTT+TGG | 0.349245 | 8_4:+50019165 | Msa1330770:CDS |
| GAACAATGGTTTCGTGAAAA+TGG | 0.352645 | 8_4:+50018783 | Msa1330770:CDS |
| ATGGGGCCGGATCAAATTAT+TGG | 0.373812 | 8_4:+50019105 | Msa1330770:CDS |
| TAGGCTAGTTTAGTGAAAAC+AGG | 0.378761 | 8_4:-50018690 | None:intergenic |
| TTGAGACGGTGTTTGAAAAC+GGG | 0.405778 | 8_4:-50018915 | None:intergenic |
| AAACTTAATTAAAACTCTCT+AGG | 0.411336 | 8_4:-50019608 | None:intergenic |
| ATAATCTTGCTATGGAAAAT+GGG | 0.419756 | 8_4:+50019405 | Msa1330770:CDS |
| AATGGGAATAGGACTAAAAC+TGG | 0.424053 | 8_4:+50018749 | Msa1330770:CDS |
| TATAGCAATTCAGCGTCGTT+TGG | 0.426241 | 8_4:-50018975 | None:intergenic |
| AATCATAGAAGAATGGGAAT+AGG | 0.430636 | 8_4:+50018738 | Msa1330770:CDS |
| TGTCTTGTGAAGAAGATTTG+TGG | 0.432512 | 8_4:+50019498 | Msa1330770:CDS |
| GTCTCTCGGAACGGCTAAGA+AGG | 0.443084 | 8_4:-50019075 | None:intergenic |
| GTGATGGTTCTGTTGGTGAT+TGG | 0.444763 | 8_4:+50019549 | Msa1330770:CDS |
| TTCTCCAAATCATAGAAGAA+TGG | 0.447810 | 8_4:+50018731 | Msa1330770:CDS |
| TCTCCAAATCATAGAAGAAT+GGG | 0.453132 | 8_4:+50018732 | Msa1330770:CDS |
| TTTCATCTAATGTATGGAAT+TGG | 0.454495 | 8_4:+50019329 | Msa1330770:CDS |
| AGTGAAAACAGGGACATGAT+TGG | 0.457232 | 8_4:-50018679 | None:intergenic |
| GGAATTTGGTGTTTCTGTGA+TGG | 0.461299 | 8_4:-50018658 | None:intergenic |
| TTTGAGACGGTGTTTGAAAA+CGG | 0.461617 | 8_4:-50018916 | None:intergenic |
| CTTACCAGCATGAGAAAAGT+TGG | 0.464838 | 8_4:-50018433 | None:intergenic |
| TGAGAAAAGTTGGTGAGTTA+CGG | 0.469288 | 8_4:-50018423 | None:intergenic |
| TTCTTAGCCGTTCCGAGAGA+CGG | 0.475720 | 8_4:+50019077 | Msa1330770:CDS |
| CTTTGAGTAACCACATTTGT+CGG | 0.477857 | 8_4:-50018865 | None:intergenic |
| GAGTTTAAGGATTGTTACTT+TGG | 0.478195 | 8_4:-50018949 | None:intergenic |
| GCCGGATCAAATTATTGGTC+CGG | 0.479202 | 8_4:+50019110 | Msa1330770:CDS |
| TTCCGAGAGACGGAAAATAT+GGG | 0.480561 | 8_4:+50019087 | Msa1330770:CDS |
| TAACGGACCCACCGAGTTCG+TGG | 0.490320 | 8_4:+50019147 | Msa1330770:CDS |
| CATCTAATGTATGGAATTGG+TGG | 0.508655 | 8_4:+50019332 | Msa1330770:CDS |
| AACTTAATTAAAACTCTCTA+GGG | 0.509353 | 8_4:-50019607 | None:intergenic |
| GAAGAGGGAAAGTTTACCAC+TGG | 0.510294 | 8_4:-50018368 | None:intergenic |
| TAACAAGGATTGACGGTGTA+CGG | 0.511747 | 8_4:-50018890 | None:intergenic |
| TACATTAGATGAAATCCAAA+CGG | 0.515685 | 8_4:-50019320 | None:intergenic |
| GCCGGACCAATAATTTGATC+CGG | 0.520408 | 8_4:-50019111 | None:intergenic |
| AACTCTTAAGCCTAAAACAT+AGG | 0.527965 | 8_4:-50018709 | None:intergenic |
| ATCTAATGTATGGAATTGGT+GGG | 0.530410 | 8_4:+50019333 | Msa1330770:CDS |
| GTTTGAAAACGGGGTTAACA+AGG | 0.535510 | 8_4:-50018905 | None:intergenic |
| GATTGGACTAAATCCAAACC+TGG | 0.541245 | 8_4:+50019566 | Msa1330770:CDS |
| ACCTTGCAAGTCGGTGAAGA+GGG | 0.550684 | 8_4:-50018383 | None:intergenic |
| GATTATAGTGATGGTTCTGT+TGG | 0.554056 | 8_4:+50019542 | Msa1330770:CDS |
| TTGCTAACACACGTCTCACG+CGG | 0.558176 | 8_4:-50019229 | None:intergenic |
| TTAGGGGAAGATTATAGTGA+TGG | 0.558836 | 8_4:+50019533 | Msa1330770:CDS |
| ATGTATGGAATTGGTGGGGA+AGG | 0.560905 | 8_4:+50019338 | Msa1330770:CDS |
| AACGGACCCACCGAGTTCGT+GGG | 0.564957 | 8_4:+50019148 | Msa1330770:CDS |
| AGGACCAGAAGTGTTGAAGA+TGG | 0.565220 | 8_4:+50019358 | Msa1330770:CDS |
| TCCCTCTTCACCGACTTGCA+AGG | 0.569380 | 8_4:+50018382 | Msa1330770:CDS |
| GAGATAGGCAATGAGACAGT+CGG | 0.571965 | 8_4:+50018570 | Msa1330770:CDS |
| CACCTTGCAAGTCGGTGAAG+AGG | 0.582711 | 8_4:-50018384 | None:intergenic |
| TGATAGACAAGGCTTTACCT+TGG | 0.583323 | 8_4:+50019264 | Msa1330770:CDS |
| CTTACTAAAGCCCACGAACT+CGG | 0.584602 | 8_4:-50019158 | None:intergenic |
| AGAGACGGAAAATATGGGGC+CGG | 0.595183 | 8_4:+50019092 | Msa1330770:CDS |
| TGGTGCTGAGTATTCATACA+TGG | 0.597000 | 8_4:+50018803 | Msa1330770:CDS |
| ACGGGGTTAACAAGGATTGA+CGG | 0.599326 | 8_4:-50018897 | None:intergenic |
| TGCTAACACACGTCTCACGC+GGG | 0.608765 | 8_4:-50019228 | None:intergenic |
| CTAAAGCCCACGAACTCGGT+GGG | 0.630773 | 8_4:-50019154 | None:intergenic |
| ATATGTGAAGTTGGACCCAG+TGG | 0.635969 | 8_4:+50018352 | Msa1330770:CDS |
| AACAACTCGCGTGATAGACA+AGG | 0.641023 | 8_4:+50019253 | Msa1330770:CDS |
| TCTAATGTATGGAATTGGTG+GGG | 0.644769 | 8_4:+50019334 | Msa1330770:CDS |
| TGAGACGGTGTTTGAAAACG+GGG | 0.645003 | 8_4:-50018914 | None:intergenic |
| AAGAGGGAAAGTTTACCACT+GGG | 0.649201 | 8_4:-50018367 | None:intergenic |
| TCCGAGAGACGGAAAATATG+GGG | 0.649828 | 8_4:+50019088 | Msa1330770:CDS |
| ACTAAAGCCCACGAACTCGG+TGG | 0.653999 | 8_4:-50019155 | None:intergenic |
| AAGATGGTGAAAGCTTTGTG+TGG | 0.659803 | 8_4:+50019374 | Msa1330770:CDS |
| CAAGACAAAACCTTCCAATG+AGG | 0.667319 | 8_4:-50019482 | None:intergenic |
| AATAGCGTCACCTTGCAAGT+CGG | 0.667497 | 8_4:-50018392 | None:intergenic |
| AGGCTAGTTTAGTGAAAACA+GGG | 0.668200 | 8_4:-50018689 | None:intergenic |
| CAGTGGTGGAGAATTTGTAA+CGG | 0.668778 | 8_4:-50018998 | None:intergenic |
| TGAGGAATAGCAAAACGTAA+CGG | 0.672089 | 8_4:-50019464 | None:intergenic |
| GGAAAATGGGTGTAGTGCTG+TGG | 0.676685 | 8_4:+50019418 | Msa1330770:CDS |
| ATTGGACTAAATCCAAACCT+GGG | 0.691102 | 8_4:+50019567 | Msa1330770:CDS |
| TGTATCAAAACCGTTACATG+CGG | 0.691594 | 8_4:+50018606 | Msa1330770:CDS |
| AAAACAGAATCAATGTCACG+AGG | 0.691646 | 8_4:-50019029 | None:intergenic |
| GTGGTGTATTAAGAGATTAG+GGG | 0.708222 | 8_4:+50019517 | Msa1330770:CDS |
| GAGACAGTCGGAATGATACG+AGG | 0.713167 | 8_4:+50018582 | Msa1330770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAAATAACAAAGTT+AGG | - | chr8_4:50018541-50018560 | None:intergenic | 10.0% |
| !! | AAAATTAAAATAACAAAGTT+AGG | - | chr8_4:50018541-50018560 | None:intergenic | 10.0% |
| !!! | ATTATTATAGTATATGGTTT+TGG | - | chr8_4:50018473-50018492 | None:intergenic | 15.0% |
| !! | TGATACATTATTATAGTATA+TGG | - | chr8_4:50018479-50018498 | None:intergenic | 15.0% |
| !!! | ACTTTGTTATTTTAATTTTC+AGG | + | chr8_4:50018542-50018561 | Msa1330770:intron | 15.0% |
| !!! | ATTATTATAGTATATGGTTT+TGG | - | chr8_4:50018473-50018492 | None:intergenic | 15.0% |
| !! | TGATACATTATTATAGTATA+TGG | - | chr8_4:50018479-50018498 | None:intergenic | 15.0% |
| !!! | ACTTTGTTATTTTAATTTTC+AGG | + | chr8_4:50018542-50018561 | Msa1330770:intron | 15.0% |
| !! | AAAATAACAAAGTTAGGATT+AGG | - | chr8_4:50018535-50018554 | None:intergenic | 20.0% |
| !! | TTAAAAAACAAACTTACTCT+TGG | + | chr8_4:50019050-50019069 | Msa1330770:CDS | 20.0% |
| !! | AAAATAACAAAGTTAGGATT+AGG | - | chr8_4:50018535-50018554 | None:intergenic | 20.0% |
| !! | TTAAAAAACAAACTTACTCT+TGG | + | chr8_4:50019050-50019069 | Msa1330770:CDS | 20.0% |
| ! | GTTGAAAAAATATGTGAAGT+TGG | + | chr8_4:50018343-50018362 | Msa1330770:CDS | 25.0% |
| ! | ACTAAAACTGGTAGAAAAAA+TGG | + | chr8_4:50018761-50018780 | Msa1330770:CDS | 25.0% |
| ! | TACATTAGATGAAATCCAAA+CGG | - | chr8_4:50019323-50019342 | None:intergenic | 25.0% |
| ! | TTTGGATTTCATCTAATGTA+TGG | + | chr8_4:50019323-50019342 | Msa1330770:CDS | 25.0% |
| ! | TTTCATCTAATGTATGGAAT+TGG | + | chr8_4:50019329-50019348 | Msa1330770:CDS | 25.0% |
| !! | ATAATCTTGCTATGGAAAAT+GGG | + | chr8_4:50019405-50019424 | Msa1330770:CDS | 25.0% |
| ! | GTTGAAAAAATATGTGAAGT+TGG | + | chr8_4:50018343-50018362 | Msa1330770:CDS | 25.0% |
| ! | ACTAAAACTGGTAGAAAAAA+TGG | + | chr8_4:50018761-50018780 | Msa1330770:CDS | 25.0% |
| ! | TACATTAGATGAAATCCAAA+CGG | - | chr8_4:50019323-50019342 | None:intergenic | 25.0% |
| ! | TTTGGATTTCATCTAATGTA+TGG | + | chr8_4:50019323-50019342 | Msa1330770:CDS | 25.0% |
| ! | TTTCATCTAATGTATGGAAT+TGG | + | chr8_4:50019329-50019348 | Msa1330770:CDS | 25.0% |
| !! | ATAATCTTGCTATGGAAAAT+GGG | + | chr8_4:50019405-50019424 | Msa1330770:CDS | 25.0% |
| !! | ACTAAACTAGCCTATGTTTT+AGG | + | chr8_4:50018699-50018718 | Msa1330770:CDS | 30.0% |
| AACTCTTAAGCCTAAAACAT+AGG | - | chr8_4:50018712-50018731 | None:intergenic | 30.0% | |
| TTCTCCAAATCATAGAAGAA+TGG | + | chr8_4:50018731-50018750 | Msa1330770:CDS | 30.0% | |
| TCTCCAAATCATAGAAGAAT+GGG | + | chr8_4:50018732-50018751 | Msa1330770:CDS | 30.0% | |
| ATTCCCATTCTTCTATGATT+TGG | - | chr8_4:50018738-50018757 | None:intergenic | 30.0% | |
| AATCATAGAAGAATGGGAAT+AGG | + | chr8_4:50018738-50018757 | Msa1330770:CDS | 30.0% | |
| TGGTAGAAAAAATGGAACAA+TGG | + | chr8_4:50018769-50018788 | Msa1330770:CDS | 30.0% | |
| ! | GAGTTTAAGGATTGTTACTT+TGG | - | chr8_4:50018952-50018971 | None:intergenic | 30.0% |
| !! | ATCGAAGGTAATTTTAACCA+AGG | - | chr8_4:50019284-50019303 | None:intergenic | 30.0% |
| TTGAAAAAATTCGGAATCGA+AGG | - | chr8_4:50019299-50019318 | None:intergenic | 30.0% | |
| CCAAACGGTTTGAAAAAATT+CGG | - | chr8_4:50019308-50019327 | None:intergenic | 30.0% | |
| ATCTAATGTATGGAATTGGT+GGG | + | chr8_4:50019333-50019352 | Msa1330770:CDS | 30.0% | |
| ! | TTTTGCTCATAATCTTGCTA+TGG | + | chr8_4:50019397-50019416 | Msa1330770:CDS | 30.0% |
| ! | CATAATCTTGCTATGGAAAA+TGG | + | chr8_4:50019404-50019423 | Msa1330770:CDS | 30.0% |
| TTGTGGTGTATTAAGAGATT+AGG | + | chr8_4:50019515-50019534 | Msa1330770:CDS | 30.0% | |
| TGTGGTGTATTAAGAGATTA+GGG | + | chr8_4:50019516-50019535 | Msa1330770:CDS | 30.0% | |
| !! | ACTAAACTAGCCTATGTTTT+AGG | + | chr8_4:50018699-50018718 | Msa1330770:CDS | 30.0% |
| AACTCTTAAGCCTAAAACAT+AGG | - | chr8_4:50018712-50018731 | None:intergenic | 30.0% | |
| TTCTCCAAATCATAGAAGAA+TGG | + | chr8_4:50018731-50018750 | Msa1330770:CDS | 30.0% | |
| TCTCCAAATCATAGAAGAAT+GGG | + | chr8_4:50018732-50018751 | Msa1330770:CDS | 30.0% | |
| ATTCCCATTCTTCTATGATT+TGG | - | chr8_4:50018738-50018757 | None:intergenic | 30.0% | |
| AATCATAGAAGAATGGGAAT+AGG | + | chr8_4:50018738-50018757 | Msa1330770:CDS | 30.0% | |
| TGGTAGAAAAAATGGAACAA+TGG | + | chr8_4:50018769-50018788 | Msa1330770:CDS | 30.0% | |
| ! | GAGTTTAAGGATTGTTACTT+TGG | - | chr8_4:50018952-50018971 | None:intergenic | 30.0% |
| !! | ATCGAAGGTAATTTTAACCA+AGG | - | chr8_4:50019284-50019303 | None:intergenic | 30.0% |
| TTGAAAAAATTCGGAATCGA+AGG | - | chr8_4:50019299-50019318 | None:intergenic | 30.0% | |
| CCAAACGGTTTGAAAAAATT+CGG | - | chr8_4:50019308-50019327 | None:intergenic | 30.0% | |
| ATCTAATGTATGGAATTGGT+GGG | + | chr8_4:50019333-50019352 | Msa1330770:CDS | 30.0% | |
| ! | TTTTGCTCATAATCTTGCTA+TGG | + | chr8_4:50019397-50019416 | Msa1330770:CDS | 30.0% |
| ! | CATAATCTTGCTATGGAAAA+TGG | + | chr8_4:50019404-50019423 | Msa1330770:CDS | 30.0% |
| TTGTGGTGTATTAAGAGATT+AGG | + | chr8_4:50019515-50019534 | Msa1330770:CDS | 30.0% | |
| TGTGGTGTATTAAGAGATTA+GGG | + | chr8_4:50019516-50019535 | Msa1330770:CDS | 30.0% | |
| !! | TGAGAAAAGTTGGTGAGTTA+CGG | - | chr8_4:50018426-50018445 | None:intergenic | 35.0% |
| !!! | AATTTTCAGGTAGCAGAGAT+AGG | + | chr8_4:50018555-50018574 | Msa1330770:intron | 35.0% |
| TGTATCAAAACCGTTACATG+CGG | + | chr8_4:50018606-50018625 | Msa1330770:CDS | 35.0% | |
| !!! | TCTGTGATGGTGTTTTTTGT+TGG | - | chr8_4:50018648-50018667 | None:intergenic | 35.0% |
| !! | AGGCTAGTTTAGTGAAAACA+GGG | - | chr8_4:50018692-50018711 | None:intergenic | 35.0% |
| !! | TAGGCTAGTTTAGTGAAAAC+AGG | - | chr8_4:50018693-50018712 | None:intergenic | 35.0% |
| AATGGGAATAGGACTAAAAC+TGG | + | chr8_4:50018749-50018768 | Msa1330770:CDS | 35.0% | |
| GAACAATGGTTTCGTGAAAA+TGG | + | chr8_4:50018783-50018802 | Msa1330770:CDS | 35.0% | |
| ! | AAACTTTTCACCGACAAATG+TGG | + | chr8_4:50018855-50018874 | Msa1330770:CDS | 35.0% |
| CTTTGAGTAACCACATTTGT+CGG | - | chr8_4:50018868-50018887 | None:intergenic | 35.0% | |
| ! | TTTGAGACGGTGTTTGAAAA+CGG | - | chr8_4:50018919-50018938 | None:intergenic | 35.0% |
| AAAACAGAATCAATGTCACG+AGG | - | chr8_4:50019032-50019051 | None:intergenic | 35.0% | |
| !!! | CCGAATTTTTTCAAACCGTT+TGG | + | chr8_4:50019305-50019324 | Msa1330770:CDS | 35.0% |
| CATCTAATGTATGGAATTGG+TGG | + | chr8_4:50019332-50019351 | Msa1330770:CDS | 35.0% | |
| TCTAATGTATGGAATTGGTG+GGG | + | chr8_4:50019334-50019353 | Msa1330770:CDS | 35.0% | |
| TGAGGAATAGCAAAACGTAA+CGG | - | chr8_4:50019467-50019486 | None:intergenic | 35.0% | |
| !!! | TACGTTTTGCTATTCCTCAT+TGG | + | chr8_4:50019468-50019487 | Msa1330770:CDS | 35.0% |
| !!! | TTTTGCTATTCCTCATTGGA+AGG | + | chr8_4:50019472-50019491 | Msa1330770:CDS | 35.0% |
| TGTCTTGTGAAGAAGATTTG+TGG | + | chr8_4:50019498-50019517 | Msa1330770:CDS | 35.0% | |
| GTGGTGTATTAAGAGATTAG+GGG | + | chr8_4:50019517-50019536 | Msa1330770:CDS | 35.0% | |
| TTAGGGGAAGATTATAGTGA+TGG | + | chr8_4:50019533-50019552 | Msa1330770:CDS | 35.0% | |
| ! | GATTATAGTGATGGTTCTGT+TGG | + | chr8_4:50019542-50019561 | Msa1330770:CDS | 35.0% |
| ATTGGACTAAATCCAAACCT+GGG | + | chr8_4:50019567-50019586 | Msa1330770:CDS | 35.0% | |
| !! | TGAGAAAAGTTGGTGAGTTA+CGG | - | chr8_4:50018426-50018445 | None:intergenic | 35.0% |
| !!! | AATTTTCAGGTAGCAGAGAT+AGG | + | chr8_4:50018555-50018574 | Msa1330770:intron | 35.0% |
| TGTATCAAAACCGTTACATG+CGG | + | chr8_4:50018606-50018625 | Msa1330770:CDS | 35.0% | |
| !!! | TCTGTGATGGTGTTTTTTGT+TGG | - | chr8_4:50018648-50018667 | None:intergenic | 35.0% |
| !! | AGGCTAGTTTAGTGAAAACA+GGG | - | chr8_4:50018692-50018711 | None:intergenic | 35.0% |
| !! | TAGGCTAGTTTAGTGAAAAC+AGG | - | chr8_4:50018693-50018712 | None:intergenic | 35.0% |
| AATGGGAATAGGACTAAAAC+TGG | + | chr8_4:50018749-50018768 | Msa1330770:CDS | 35.0% | |
| GAACAATGGTTTCGTGAAAA+TGG | + | chr8_4:50018783-50018802 | Msa1330770:CDS | 35.0% | |
| ! | AAACTTTTCACCGACAAATG+TGG | + | chr8_4:50018855-50018874 | Msa1330770:CDS | 35.0% |
| CTTTGAGTAACCACATTTGT+CGG | - | chr8_4:50018868-50018887 | None:intergenic | 35.0% | |
| ! | TTTGAGACGGTGTTTGAAAA+CGG | - | chr8_4:50018919-50018938 | None:intergenic | 35.0% |
| AAAACAGAATCAATGTCACG+AGG | - | chr8_4:50019032-50019051 | None:intergenic | 35.0% | |
| !!! | CCGAATTTTTTCAAACCGTT+TGG | + | chr8_4:50019305-50019324 | Msa1330770:CDS | 35.0% |
| CATCTAATGTATGGAATTGG+TGG | + | chr8_4:50019332-50019351 | Msa1330770:CDS | 35.0% | |
| TCTAATGTATGGAATTGGTG+GGG | + | chr8_4:50019334-50019353 | Msa1330770:CDS | 35.0% | |
| TGAGGAATAGCAAAACGTAA+CGG | - | chr8_4:50019467-50019486 | None:intergenic | 35.0% | |
| !!! | TACGTTTTGCTATTCCTCAT+TGG | + | chr8_4:50019468-50019487 | Msa1330770:CDS | 35.0% |
| !!! | TTTTGCTATTCCTCATTGGA+AGG | + | chr8_4:50019472-50019491 | Msa1330770:CDS | 35.0% |
| TGTCTTGTGAAGAAGATTTG+TGG | + | chr8_4:50019498-50019517 | Msa1330770:CDS | 35.0% | |
| GTGGTGTATTAAGAGATTAG+GGG | + | chr8_4:50019517-50019536 | Msa1330770:CDS | 35.0% | |
| TTAGGGGAAGATTATAGTGA+TGG | + | chr8_4:50019533-50019552 | Msa1330770:CDS | 35.0% | |
| ! | GATTATAGTGATGGTTCTGT+TGG | + | chr8_4:50019542-50019561 | Msa1330770:CDS | 35.0% |
| ATTGGACTAAATCCAAACCT+GGG | + | chr8_4:50019567-50019586 | Msa1330770:CDS | 35.0% | |
| AAGAGGGAAAGTTTACCACT+GGG | - | chr8_4:50018370-50018389 | None:intergenic | 40.0% | |
| CTTACCAGCATGAGAAAAGT+TGG | - | chr8_4:50018436-50018455 | None:intergenic | 40.0% | |
| !!! | GAGTTTTTTGCCGCATGTAA+CGG | - | chr8_4:50018619-50018638 | None:intergenic | 40.0% |
| !! | GGAATTTGGTGTTTCTGTGA+TGG | - | chr8_4:50018661-50018680 | None:intergenic | 40.0% |
| ACAGGGACATGATTGGAATT+TGG | - | chr8_4:50018675-50018694 | None:intergenic | 40.0% | |
| AGTGAAAACAGGGACATGAT+TGG | - | chr8_4:50018682-50018701 | None:intergenic | 40.0% | |
| ! | TGGTGCTGAGTATTCATACA+TGG | + | chr8_4:50018803-50018822 | Msa1330770:CDS | 40.0% |
| TAACAAGGATTGACGGTGTA+CGG | - | chr8_4:50018893-50018912 | None:intergenic | 40.0% | |
| GTTTGAAAACGGGGTTAACA+AGG | - | chr8_4:50018908-50018927 | None:intergenic | 40.0% | |
| TTGAGACGGTGTTTGAAAAC+GGG | - | chr8_4:50018918-50018937 | None:intergenic | 40.0% | |
| !!! | TGGACGATGATGTTTTGAGA+CGG | - | chr8_4:50018932-50018951 | None:intergenic | 40.0% |
| TATAGCAATTCAGCGTCGTT+TGG | - | chr8_4:50018978-50018997 | None:intergenic | 40.0% | |
| ! | CAGTGGTGGAGAATTTGTAA+CGG | - | chr8_4:50019001-50019020 | None:intergenic | 40.0% |
| ! | ATATTTTCCGTCTCTCGGAA+CGG | - | chr8_4:50019087-50019106 | None:intergenic | 40.0% |
| TTCCGAGAGACGGAAAATAT+GGG | + | chr8_4:50019087-50019106 | Msa1330770:CDS | 40.0% | |
| TGGGTCCGTTAAAAAGCTTT+CGG | - | chr8_4:50019138-50019157 | None:intergenic | 40.0% | |
| GTGTTTACCCTCGAAGTAAA+AGG | + | chr8_4:50019200-50019219 | Msa1330770:CDS | 40.0% | |
| TGATAGACAAGGCTTTACCT+TGG | + | chr8_4:50019264-50019283 | Msa1330770:CDS | 40.0% | |
| TTCACCATCTTCAACACTTC+TGG | - | chr8_4:50019365-50019384 | None:intergenic | 40.0% | |
| ! | AAGATGGTGAAAGCTTTGTG+TGG | + | chr8_4:50019374-50019393 | Msa1330770:CDS | 40.0% |
| CAAGACAAAACCTTCCAATG+AGG | - | chr8_4:50019485-50019504 | None:intergenic | 40.0% | |
| GATTGGACTAAATCCAAACC+TGG | + | chr8_4:50019566-50019585 | Msa1330770:CDS | 40.0% | |
| AAAAATGGAGAACCCAGGTT+TGG | - | chr8_4:50019582-50019601 | None:intergenic | 40.0% | |
| TCAACAAAAATGGAGAACCC+AGG | - | chr8_4:50019587-50019606 | None:intergenic | 40.0% | |
| !! | CTCTCTAGGGTCAACAAAAA+TGG | - | chr8_4:50019597-50019616 | None:intergenic | 40.0% |
| AAGAGGGAAAGTTTACCACT+GGG | - | chr8_4:50018370-50018389 | None:intergenic | 40.0% | |
| CTTACCAGCATGAGAAAAGT+TGG | - | chr8_4:50018436-50018455 | None:intergenic | 40.0% | |
| !!! | GAGTTTTTTGCCGCATGTAA+CGG | - | chr8_4:50018619-50018638 | None:intergenic | 40.0% |
| !! | GGAATTTGGTGTTTCTGTGA+TGG | - | chr8_4:50018661-50018680 | None:intergenic | 40.0% |
| ACAGGGACATGATTGGAATT+TGG | - | chr8_4:50018675-50018694 | None:intergenic | 40.0% | |
| AGTGAAAACAGGGACATGAT+TGG | - | chr8_4:50018682-50018701 | None:intergenic | 40.0% | |
| ! | TGGTGCTGAGTATTCATACA+TGG | + | chr8_4:50018803-50018822 | Msa1330770:CDS | 40.0% |
| TAACAAGGATTGACGGTGTA+CGG | - | chr8_4:50018893-50018912 | None:intergenic | 40.0% | |
| GTTTGAAAACGGGGTTAACA+AGG | - | chr8_4:50018908-50018927 | None:intergenic | 40.0% | |
| TTGAGACGGTGTTTGAAAAC+GGG | - | chr8_4:50018918-50018937 | None:intergenic | 40.0% | |
| !!! | TGGACGATGATGTTTTGAGA+CGG | - | chr8_4:50018932-50018951 | None:intergenic | 40.0% |
| TATAGCAATTCAGCGTCGTT+TGG | - | chr8_4:50018978-50018997 | None:intergenic | 40.0% | |
| ! | CAGTGGTGGAGAATTTGTAA+CGG | - | chr8_4:50019001-50019020 | None:intergenic | 40.0% |
| ! | ATATTTTCCGTCTCTCGGAA+CGG | - | chr8_4:50019087-50019106 | None:intergenic | 40.0% |
| TTCCGAGAGACGGAAAATAT+GGG | + | chr8_4:50019087-50019106 | Msa1330770:CDS | 40.0% | |
| TGGGTCCGTTAAAAAGCTTT+CGG | - | chr8_4:50019138-50019157 | None:intergenic | 40.0% | |
| GTGTTTACCCTCGAAGTAAA+AGG | + | chr8_4:50019200-50019219 | Msa1330770:CDS | 40.0% | |
| TGATAGACAAGGCTTTACCT+TGG | + | chr8_4:50019264-50019283 | Msa1330770:CDS | 40.0% | |
| TTCACCATCTTCAACACTTC+TGG | - | chr8_4:50019365-50019384 | None:intergenic | 40.0% | |
| ! | AAGATGGTGAAAGCTTTGTG+TGG | + | chr8_4:50019374-50019393 | Msa1330770:CDS | 40.0% |
| CAAGACAAAACCTTCCAATG+AGG | - | chr8_4:50019485-50019504 | None:intergenic | 40.0% | |
| GATTGGACTAAATCCAAACC+TGG | + | chr8_4:50019566-50019585 | Msa1330770:CDS | 40.0% | |
| AAAAATGGAGAACCCAGGTT+TGG | - | chr8_4:50019582-50019601 | None:intergenic | 40.0% | |
| TCAACAAAAATGGAGAACCC+AGG | - | chr8_4:50019587-50019606 | None:intergenic | 40.0% | |
| !! | CTCTCTAGGGTCAACAAAAA+TGG | - | chr8_4:50019597-50019616 | None:intergenic | 40.0% |
| ATATGTGAAGTTGGACCCAG+TGG | + | chr8_4:50018352-50018371 | Msa1330770:CDS | 45.0% | |
| GAAGAGGGAAAGTTTACCAC+TGG | - | chr8_4:50018371-50018390 | None:intergenic | 45.0% | |
| AATAGCGTCACCTTGCAAGT+CGG | - | chr8_4:50018395-50018414 | None:intergenic | 45.0% | |
| ! | CTCACCAACTTTTCTCATGC+TGG | + | chr8_4:50018429-50018448 | Msa1330770:CDS | 45.0% |
| GAGATAGGCAATGAGACAGT+CGG | + | chr8_4:50018570-50018589 | Msa1330770:CDS | 45.0% | |
| ACGGGGTTAACAAGGATTGA+CGG | - | chr8_4:50018900-50018919 | None:intergenic | 45.0% | |
| TGAGACGGTGTTTGAAAACG+GGG | - | chr8_4:50018917-50018936 | None:intergenic | 45.0% | |
| !! | CGTCGTTTGGTGTGAGTTTA+AGG | - | chr8_4:50018965-50018984 | None:intergenic | 45.0% |
| ACGAGGAAAAAACTCAGTGG+TGG | - | chr8_4:50019015-50019034 | None:intergenic | 45.0% | |
| GTCACGAGGAAAAAACTCAG+TGG | - | chr8_4:50019018-50019037 | None:intergenic | 45.0% | |
| GTTCCGAGAGACGGAAAATA+TGG | + | chr8_4:50019086-50019105 | Msa1330770:CDS | 45.0% | |
| TCCGAGAGACGGAAAATATG+GGG | + | chr8_4:50019088-50019107 | Msa1330770:CDS | 45.0% | |
| ATGGGGCCGGATCAAATTAT+TGG | + | chr8_4:50019105-50019124 | Msa1330770:CDS | 45.0% | |
| GCCGGATCAAATTATTGGTC+CGG | + | chr8_4:50019110-50019129 | Msa1330770:CDS | 45.0% | |
| GCCGGACCAATAATTTGATC+CGG | - | chr8_4:50019114-50019133 | None:intergenic | 45.0% | |
| CGTTAAAAAGCTTTCGGAGC+CGG | - | chr8_4:50019132-50019151 | None:intergenic | 45.0% | |
| ! | CGGCTCCGAAAGCTTTTTAA+CGG | + | chr8_4:50019130-50019149 | Msa1330770:CDS | 45.0% |
| CTTACTAAAGCCCACGAACT+CGG | - | chr8_4:50019161-50019180 | None:intergenic | 45.0% | |
| ! | CGTGGGCTTTAGTAAGTGTT+TGG | + | chr8_4:50019165-50019184 | Msa1330770:CDS | 45.0% |
| AACAACTCGCGTGATAGACA+AGG | + | chr8_4:50019253-50019272 | Msa1330770:CDS | 45.0% | |
| ATGTATGGAATTGGTGGGGA+AGG | + | chr8_4:50019338-50019357 | Msa1330770:CDS | 45.0% | |
| !! | AGGACCAGAAGTGTTGAAGA+TGG | + | chr8_4:50019358-50019377 | Msa1330770:CDS | 45.0% |
| !! | GTGATGGTTCTGTTGGTGAT+TGG | + | chr8_4:50019549-50019568 | Msa1330770:CDS | 45.0% |
| ATATGTGAAGTTGGACCCAG+TGG | + | chr8_4:50018352-50018371 | Msa1330770:CDS | 45.0% | |
| GAAGAGGGAAAGTTTACCAC+TGG | - | chr8_4:50018371-50018390 | None:intergenic | 45.0% | |
| AATAGCGTCACCTTGCAAGT+CGG | - | chr8_4:50018395-50018414 | None:intergenic | 45.0% | |
| ! | CTCACCAACTTTTCTCATGC+TGG | + | chr8_4:50018429-50018448 | Msa1330770:CDS | 45.0% |
| GAGATAGGCAATGAGACAGT+CGG | + | chr8_4:50018570-50018589 | Msa1330770:CDS | 45.0% | |
| ACGGGGTTAACAAGGATTGA+CGG | - | chr8_4:50018900-50018919 | None:intergenic | 45.0% | |
| TGAGACGGTGTTTGAAAACG+GGG | - | chr8_4:50018917-50018936 | None:intergenic | 45.0% | |
| !! | CGTCGTTTGGTGTGAGTTTA+AGG | - | chr8_4:50018965-50018984 | None:intergenic | 45.0% |
| ACGAGGAAAAAACTCAGTGG+TGG | - | chr8_4:50019015-50019034 | None:intergenic | 45.0% | |
| GTCACGAGGAAAAAACTCAG+TGG | - | chr8_4:50019018-50019037 | None:intergenic | 45.0% | |
| GTTCCGAGAGACGGAAAATA+TGG | + | chr8_4:50019086-50019105 | Msa1330770:CDS | 45.0% | |
| TCCGAGAGACGGAAAATATG+GGG | + | chr8_4:50019088-50019107 | Msa1330770:CDS | 45.0% | |
| ATGGGGCCGGATCAAATTAT+TGG | + | chr8_4:50019105-50019124 | Msa1330770:CDS | 45.0% | |
| GCCGGATCAAATTATTGGTC+CGG | + | chr8_4:50019110-50019129 | Msa1330770:CDS | 45.0% | |
| GCCGGACCAATAATTTGATC+CGG | - | chr8_4:50019114-50019133 | None:intergenic | 45.0% | |
| CGTTAAAAAGCTTTCGGAGC+CGG | - | chr8_4:50019132-50019151 | None:intergenic | 45.0% | |
| ! | CGGCTCCGAAAGCTTTTTAA+CGG | + | chr8_4:50019130-50019149 | Msa1330770:CDS | 45.0% |
| CTTACTAAAGCCCACGAACT+CGG | - | chr8_4:50019161-50019180 | None:intergenic | 45.0% | |
| ! | CGTGGGCTTTAGTAAGTGTT+TGG | + | chr8_4:50019165-50019184 | Msa1330770:CDS | 45.0% |
| AACAACTCGCGTGATAGACA+AGG | + | chr8_4:50019253-50019272 | Msa1330770:CDS | 45.0% | |
| ATGTATGGAATTGGTGGGGA+AGG | + | chr8_4:50019338-50019357 | Msa1330770:CDS | 45.0% | |
| !! | AGGACCAGAAGTGTTGAAGA+TGG | + | chr8_4:50019358-50019377 | Msa1330770:CDS | 45.0% |
| !! | GTGATGGTTCTGTTGGTGAT+TGG | + | chr8_4:50019549-50019568 | Msa1330770:CDS | 45.0% |
| ACCTTGCAAGTCGGTGAAGA+GGG | - | chr8_4:50018386-50018405 | None:intergenic | 50.0% | |
| GAGACAGTCGGAATGATACG+AGG | + | chr8_4:50018582-50018601 | Msa1330770:CDS | 50.0% | |
| TTCTTAGCCGTTCCGAGAGA+CGG | + | chr8_4:50019077-50019096 | Msa1330770:CDS | 50.0% | |
| ! | GCCCCATATTTTCCGTCTCT+CGG | - | chr8_4:50019092-50019111 | None:intergenic | 50.0% |
| AGAGACGGAAAATATGGGGC+CGG | + | chr8_4:50019092-50019111 | Msa1330770:CDS | 50.0% | |
| TTGCTAACACACGTCTCACG+CGG | - | chr8_4:50019232-50019251 | None:intergenic | 50.0% | |
| GGAAAATGGGTGTAGTGCTG+TGG | + | chr8_4:50019418-50019437 | Msa1330770:CDS | 50.0% | |
| ACCTTGCAAGTCGGTGAAGA+GGG | - | chr8_4:50018386-50018405 | None:intergenic | 50.0% | |
| GAGACAGTCGGAATGATACG+AGG | + | chr8_4:50018582-50018601 | Msa1330770:CDS | 50.0% | |
| TTCTTAGCCGTTCCGAGAGA+CGG | + | chr8_4:50019077-50019096 | Msa1330770:CDS | 50.0% | |
| ! | GCCCCATATTTTCCGTCTCT+CGG | - | chr8_4:50019092-50019111 | None:intergenic | 50.0% |
| AGAGACGGAAAATATGGGGC+CGG | + | chr8_4:50019092-50019111 | Msa1330770:CDS | 50.0% | |
| TTGCTAACACACGTCTCACG+CGG | - | chr8_4:50019232-50019251 | None:intergenic | 50.0% | |
| GGAAAATGGGTGTAGTGCTG+TGG | + | chr8_4:50019418-50019437 | Msa1330770:CDS | 50.0% | |
| !! | TCCCTCTTCACCGACTTGCA+AGG | + | chr8_4:50018382-50018401 | Msa1330770:CDS | 55.0% |
| CACCTTGCAAGTCGGTGAAG+AGG | - | chr8_4:50018387-50018406 | None:intergenic | 55.0% | |
| GTCTCTCGGAACGGCTAAGA+AGG | - | chr8_4:50019078-50019097 | None:intergenic | 55.0% | |
| CTAAAGCCCACGAACTCGGT+GGG | - | chr8_4:50019157-50019176 | None:intergenic | 55.0% | |
| ACTAAAGCCCACGAACTCGG+TGG | - | chr8_4:50019158-50019177 | None:intergenic | 55.0% | |
| ! | GGACGCGCCTTTTACTTCGA+GGG | - | chr8_4:50019210-50019229 | None:intergenic | 55.0% |
| TGCTAACACACGTCTCACGC+GGG | - | chr8_4:50019231-50019250 | None:intergenic | 55.0% | |
| !! | TCCCTCTTCACCGACTTGCA+AGG | + | chr8_4:50018382-50018401 | Msa1330770:CDS | 55.0% |
| CACCTTGCAAGTCGGTGAAG+AGG | - | chr8_4:50018387-50018406 | None:intergenic | 55.0% | |
| GTCTCTCGGAACGGCTAAGA+AGG | - | chr8_4:50019078-50019097 | None:intergenic | 55.0% | |
| CTAAAGCCCACGAACTCGGT+GGG | - | chr8_4:50019157-50019176 | None:intergenic | 55.0% | |
| ACTAAAGCCCACGAACTCGG+TGG | - | chr8_4:50019158-50019177 | None:intergenic | 55.0% | |
| ! | GGACGCGCCTTTTACTTCGA+GGG | - | chr8_4:50019210-50019229 | None:intergenic | 55.0% |
| TGCTAACACACGTCTCACGC+GGG | - | chr8_4:50019231-50019250 | None:intergenic | 55.0% | |
| ! | TAACGGACCCACCGAGTTCG+TGG | + | chr8_4:50019147-50019166 | Msa1330770:CDS | 60.0% |
| AACGGACCCACCGAGTTCGT+GGG | + | chr8_4:50019148-50019167 | Msa1330770:CDS | 60.0% | |
| ! | GGGACGCGCCTTTTACTTCG+AGG | - | chr8_4:50019211-50019230 | None:intergenic | 60.0% |
| ! | TAACGGACCCACCGAGTTCG+TGG | + | chr8_4:50019147-50019166 | Msa1330770:CDS | 60.0% |
| AACGGACCCACCGAGTTCGT+GGG | + | chr8_4:50019148-50019167 | Msa1330770:CDS | 60.0% | |
| ! | GGGACGCGCCTTTTACTTCG+AGG | - | chr8_4:50019211-50019230 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 50018325 | 50019619 | 50018325 | ID=Msa1330770;Name=Msa1330770 |
| chr8_4 | mRNA | 50018325 | 50019619 | 50018325 | ID=Msa1330770-mRNA-1;Parent=Msa1330770;Name=Msa1330770-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|0.5|2|0|394 |
| chr8_4 | exon | 50018325 | 50018450 | 50018325 | ID=Msa1330770-mRNA-1:exon:14540;Parent=Msa1330770-mRNA-1 |
| chr8_4 | exon | 50018564 | 50019619 | 50018564 | ID=Msa1330770-mRNA-1:exon:14541;Parent=Msa1330770-mRNA-1 |
| chr8_4 | CDS | 50018325 | 50018450 | 50018325 | ID=Msa1330770-mRNA-1:cds;Parent=Msa1330770-mRNA-1 |
| chr8_4 | CDS | 50018564 | 50019619 | 50018564 | ID=Msa1330770-mRNA-1:cds;Parent=Msa1330770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
