Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407300 | XP_013457495.1 | 96.107 | 411 | 15 | 1 | 1 | 410 | 1 | 411 | 0.0 | 812 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407300 | sp|O64815|HLS1L_ARATH | 69.880 | 415 | 113 | 4 | 4 | 410 | 3 | 413 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407300 | A0A072UQ97 | 96.107 | 411 | 15 | 1 | 1 | 410 | 1 | 411 | 0.0 | 812 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1407300 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1297020 | Msa1407300 | 0.911596 | 5.082392e-83 | -8.615850e-47 |
| Msa1330770 | Msa1407300 | 0.955156 | 5.795527e-113 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407300 | MtrunA17_Chr4g0053961 | 96.107 | 411 | 15 | 1 | 1 | 410 | 1 | 411 | 0.0 | 812 |
| Msa1407300 | MtrunA17_Chr5g0401351 | 71.253 | 407 | 107 | 5 | 4 | 410 | 7 | 403 | 0.0 | 606 |
| Msa1407300 | MtrunA17_Chr4g0001411 | 47.129 | 418 | 183 | 8 | 3 | 410 | 20 | 409 | 3.32e-124 | 365 |
| Msa1407300 | MtrunA17_Chr3g0105631 | 48.744 | 398 | 173 | 7 | 16 | 409 | 17 | 387 | 8.33e-120 | 353 |
| Msa1407300 | MtrunA17_Chr4g0068331 | 33.570 | 423 | 243 | 12 | 3 | 410 | 8 | 407 | 9.80e-63 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407300 | AT2G23060.1 | 69.880 | 415 | 113 | 4 | 4 | 410 | 3 | 413 | 0.0 | 592 |
| Msa1407300 | AT4G37580.1 | 70.690 | 406 | 110 | 3 | 8 | 410 | 4 | 403 | 0.0 | 571 |
| Msa1407300 | AT4G37580.2 | 71.387 | 346 | 93 | 2 | 65 | 410 | 7 | 346 | 5.10e-175 | 492 |
| Msa1407300 | AT5G67430.1 | 62.069 | 406 | 128 | 9 | 5 | 410 | 7 | 386 | 9.48e-172 | 486 |
| Msa1407300 | AT2G23060.2 | 73.214 | 280 | 74 | 1 | 131 | 410 | 1 | 279 | 8.65e-153 | 433 |
| Msa1407300 | AT5G67430.2 | 62.757 | 341 | 106 | 8 | 69 | 409 | 1 | 320 | 1.75e-144 | 414 |
| Msa1407300 | AT2G30090.1 | 41.707 | 410 | 192 | 7 | 8 | 409 | 15 | 385 | 6.27e-98 | 298 |
Find 84 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCGTTTGGTGTGAGTTTA+AGG | 0.156297 | tig0023279:+85193 | None:intergenic |
| CATAATCTTGCTATGGAAAA+TGG | 0.159585 | tig0023279:-84751 | Msa1407300:CDS |
| ACACTTTCTCTATCTTTATT+AGG | 0.193995 | tig0023279:+85842 | None:intergenic |
| ATTCCCATTCTTCTATGATT+TGG | 0.243356 | tig0023279:+85420 | None:intergenic |
| GTTCCGAGAGACGGAAAATA+TGG | 0.259285 | tig0023279:-85069 | Msa1407300:CDS |
| ACAGGGACATGATTGGAATT+TGG | 0.275130 | tig0023279:+85483 | None:intergenic |
| TGTGGTGTATTAAGAGATTA+GGG | 0.277467 | tig0023279:-84639 | Msa1407300:CDS |
| TTCACCATCTTCAACACTTC+TGG | 0.289161 | tig0023279:+84793 | None:intergenic |
| TTGTGGTGTATTAAGAGATT+AGG | 0.337855 | tig0023279:-84640 | Msa1407300:CDS |
| GTGTTTACCCTCGAAGTAAA+AGG | 0.339022 | tig0023279:-84955 | Msa1407300:CDS |
| TTTGGATTTCATCTAATGTA+TGG | 0.345767 | tig0023279:-84832 | Msa1407300:CDS |
| CGTGGGCTTTAGTAAGTGTT+TGG | 0.349245 | tig0023279:-84990 | Msa1407300:CDS |
| GAACAATGGTTTCGTGAAAA+TGG | 0.352645 | tig0023279:-85372 | Msa1407300:CDS |
| TAGGCTAGTTTAGTGAAAAC+AGG | 0.378761 | tig0023279:+85465 | None:intergenic |
| ATGGGGCCGGATCAAATAAT+TGG | 0.380330 | tig0023279:-85050 | Msa1407300:CDS |
| TTGAGACGGTGTTTGAAAAC+GGG | 0.405778 | tig0023279:+85240 | None:intergenic |
| AAACTTAATTAAAACTCTCT+AGG | 0.411336 | tig0023279:+84547 | None:intergenic |
| ATAATCTTGCTATGGAAAAT+GGG | 0.419756 | tig0023279:-84750 | Msa1407300:CDS |
| AATGGGAATAGGACTAAAAC+TGG | 0.424053 | tig0023279:-85406 | Msa1407300:CDS |
| TATAGCAATTCAGCGTCGTT+TGG | 0.426241 | tig0023279:+85180 | None:intergenic |
| AATCATAGAAGAATGGGAAT+AGG | 0.430636 | tig0023279:-85417 | Msa1407300:CDS |
| TGTCTTGTGAAGAAGATTTG+TGG | 0.432512 | tig0023279:-84657 | Msa1407300:CDS |
| GTCTCTCGGAACGGCTAAGA+AGG | 0.443084 | tig0023279:+85080 | None:intergenic |
| GTGATGGTTCTGTTGGTGAT+TGG | 0.444763 | tig0023279:-84606 | Msa1407300:CDS |
| TTCTCCAAATCATAGAAGAA+TGG | 0.447810 | tig0023279:-85424 | Msa1407300:CDS |
| TCTCCAAATCATAGAAGAAT+GGG | 0.453132 | tig0023279:-85423 | Msa1407300:CDS |
| TTTCATCTAATGTATGGAAT+TGG | 0.454495 | tig0023279:-84826 | Msa1407300:CDS |
| GCCGGACCAATTATTTGATC+CGG | 0.455789 | tig0023279:+85044 | None:intergenic |
| AGTGAAAACAGGGACATGAT+TGG | 0.457232 | tig0023279:+85476 | None:intergenic |
| GGAATTTGGTGTTTCTGTGA+TGG | 0.461299 | tig0023279:+85497 | None:intergenic |
| TTTGAGACGGTGTTTGAAAA+CGG | 0.461617 | tig0023279:+85239 | None:intergenic |
| CTTACCAGCATGAGAAAAGT+TGG | 0.464838 | tig0023279:+85722 | None:intergenic |
| TGAGAAAAGTTGGTGAGTTA+CGG | 0.469288 | tig0023279:+85732 | None:intergenic |
| TTCTTAGCCGTTCCGAGAGA+CGG | 0.475720 | tig0023279:-85078 | Msa1407300:CDS |
| CTTTGAGTAACCACATTTGT+CGG | 0.477857 | tig0023279:+85290 | None:intergenic |
| GAGTTTAAGGATTGTTACTT+TGG | 0.478195 | tig0023279:+85206 | None:intergenic |
| TTCCGAGAGACGGAAAATAT+GGG | 0.480561 | tig0023279:-85068 | Msa1407300:CDS |
| TAACGGACCCACCGAGTTCG+TGG | 0.490320 | tig0023279:-85008 | Msa1407300:CDS |
| GCCGGATCAAATAATTGGTC+CGG | 0.493470 | tig0023279:-85045 | Msa1407300:CDS |
| CATCTAATGTATGGAATTGG+TGG | 0.508655 | tig0023279:-84823 | Msa1407300:CDS |
| AACTTAATTAAAACTCTCTA+GGG | 0.509353 | tig0023279:+84548 | None:intergenic |
| GAAGAGGGAAAGTTTACCAC+TGG | 0.510294 | tig0023279:+85787 | None:intergenic |
| TAACAAGGATTGACGGTGTA+CGG | 0.511747 | tig0023279:+85265 | None:intergenic |
| TACATTAGATGAAATCCAAA+CGG | 0.515685 | tig0023279:+84835 | None:intergenic |
| AACTCTTAAGCCTAAAACAT+AGG | 0.527965 | tig0023279:+85446 | None:intergenic |
| ATCTAATGTATGGAATTGGT+GGG | 0.530410 | tig0023279:-84822 | Msa1407300:CDS |
| GTTTGAAAACGGGGTTAACA+AGG | 0.535510 | tig0023279:+85250 | None:intergenic |
| GATTGGACTAAATCCAAACC+TGG | 0.541245 | tig0023279:-84589 | Msa1407300:CDS |
| ACCTTGCAAGTCGGTGAAGA+GGG | 0.550684 | tig0023279:+85772 | None:intergenic |
| GATTATAGTGATGGTTCTGT+TGG | 0.554056 | tig0023279:-84613 | Msa1407300:CDS |
| TTGCTAACACACGTCTCACG+CGG | 0.558176 | tig0023279:+84926 | None:intergenic |
| TTAGGGGAAGATTATAGTGA+TGG | 0.558836 | tig0023279:-84622 | Msa1407300:CDS |
| ATGTATGGAATTGGTGGGGA+AGG | 0.560905 | tig0023279:-84817 | Msa1407300:CDS |
| AACGGACCCACCGAGTTCGT+GGG | 0.564957 | tig0023279:-85007 | Msa1407300:CDS |
| AGGACCAGAAGTGTTGAAGA+TGG | 0.565220 | tig0023279:-84797 | Msa1407300:CDS |
| TCCCTCTTCACCGACTTGCA+AGG | 0.569380 | tig0023279:-85773 | Msa1407300:CDS |
| GAGATAGGCAATGAGACAGT+CGG | 0.571965 | tig0023279:-85585 | Msa1407300:CDS |
| CACCTTGCAAGTCGGTGAAG+AGG | 0.582711 | tig0023279:+85771 | None:intergenic |
| TGATAGACAAGGCTTTACCT+TGG | 0.583323 | tig0023279:-84891 | Msa1407300:CDS |
| CTTACTAAAGCCCACGAACT+CGG | 0.584602 | tig0023279:+84997 | None:intergenic |
| AGAGACGGAAAATATGGGGC+CGG | 0.595183 | tig0023279:-85063 | Msa1407300:CDS |
| TGGTGCTGAGTATTCATACA+TGG | 0.597000 | tig0023279:-85352 | Msa1407300:CDS |
| ACGGGGTTAACAAGGATTGA+CGG | 0.599326 | tig0023279:+85258 | None:intergenic |
| TGCTAACACACGTCTCACGC+GGG | 0.608765 | tig0023279:+84927 | None:intergenic |
| CTAAAGCCCACGAACTCGGT+GGG | 0.630773 | tig0023279:+85001 | None:intergenic |
| ATATGTGAAGTTGGACCCAG+TGG | 0.635969 | tig0023279:-85803 | Msa1407300:CDS |
| AACAACTCGCGTGATAGACA+AGG | 0.641023 | tig0023279:-84902 | Msa1407300:CDS |
| TCTAATGTATGGAATTGGTG+GGG | 0.644769 | tig0023279:-84821 | Msa1407300:CDS |
| TGAGACGGTGTTTGAAAACG+GGG | 0.645003 | tig0023279:+85241 | None:intergenic |
| AAGAGGGAAAGTTTACCACT+GGG | 0.649201 | tig0023279:+85788 | None:intergenic |
| TCCGAGAGACGGAAAATATG+GGG | 0.649828 | tig0023279:-85067 | Msa1407300:CDS |
| ACTAAAGCCCACGAACTCGG+TGG | 0.653999 | tig0023279:+85000 | None:intergenic |
| AAGATGGTGAAAGCTTTGTG+TGG | 0.659803 | tig0023279:-84781 | Msa1407300:CDS |
| CAAGACAAAACCTTCCAATG+AGG | 0.667319 | tig0023279:+84673 | None:intergenic |
| AATAGCGTCACCTTGCAAGT+CGG | 0.667497 | tig0023279:+85763 | None:intergenic |
| AGGCTAGTTTAGTGAAAACA+GGG | 0.668200 | tig0023279:+85466 | None:intergenic |
| CAGTGGTGGAGAATTTGTAA+CGG | 0.668778 | tig0023279:+85157 | None:intergenic |
| TGAGGAATAGCAAAACGTAA+CGG | 0.672089 | tig0023279:+84691 | None:intergenic |
| GGAAAATGGGTGTAGTGCTG+TGG | 0.676685 | tig0023279:-84737 | Msa1407300:CDS |
| ATTGGACTAAATCCAAACCT+GGG | 0.691102 | tig0023279:-84588 | Msa1407300:CDS |
| TGTATCAAAACCGTTACATG+CGG | 0.691594 | tig0023279:-85549 | Msa1407300:CDS |
| AAAACAGAATCAATGTCACG+AGG | 0.691646 | tig0023279:+85126 | None:intergenic |
| GTGGTGTATTAAGAGATTAG+GGG | 0.708222 | tig0023279:-84638 | Msa1407300:CDS |
| GAGACAGTCGGAATGATACG+AGG | 0.713167 | tig0023279:-85573 | Msa1407300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAAATAACAAAGTT+AGG | + | tig0023279:84819-84838 | None:intergenic | 10.0% |
| !! | AAAATTAAAATAACAAAGTT+AGG | + | tig0023279:84819-84838 | None:intergenic | 10.0% |
| !!! | ATTATTATAGTATATGGTTT+TGG | + | tig0023279:84751-84770 | None:intergenic | 15.0% |
| !! | TGATACATTATTATAGTATA+TGG | + | tig0023279:84757-84776 | None:intergenic | 15.0% |
| !!! | ACTTTGTTATTTTAATTTTC+AGG | - | tig0023279:84820-84839 | Msa1407300:CDS | 15.0% |
| !!! | ATTATTATAGTATATGGTTT+TGG | + | tig0023279:84751-84770 | None:intergenic | 15.0% |
| !! | TGATACATTATTATAGTATA+TGG | + | tig0023279:84757-84776 | None:intergenic | 15.0% |
| !!! | ACTTTGTTATTTTAATTTTC+AGG | - | tig0023279:84820-84839 | Msa1407300:CDS | 15.0% |
| !! | AAAATAACAAAGTTAGGATT+AGG | + | tig0023279:84813-84832 | None:intergenic | 20.0% |
| !! | TTAAAAAACAAACTTACTCT+TGG | - | tig0023279:85328-85347 | Msa1407300:CDS | 20.0% |
| !! | AAAATAACAAAGTTAGGATT+AGG | + | tig0023279:84813-84832 | None:intergenic | 20.0% |
| !! | TTAAAAAACAAACTTACTCT+TGG | - | tig0023279:85328-85347 | Msa1407300:CDS | 20.0% |
| ! | ACACTTTCTCTATCTTTATT+AGG | + | tig0023279:84594-84613 | None:intergenic | 25.0% |
| ! | GTTGAAAAAATATGTGAAGT+TGG | - | tig0023279:84621-84640 | Msa1407300:CDS | 25.0% |
| ! | ACTAAAACTGGTAGAAAAAA+TGG | - | tig0023279:85039-85058 | Msa1407300:CDS | 25.0% |
| ! | TACATTAGATGAAATCCAAA+CGG | + | tig0023279:85601-85620 | None:intergenic | 25.0% |
| ! | TTTGGATTTCATCTAATGTA+TGG | - | tig0023279:85601-85620 | Msa1407300:intron | 25.0% |
| ! | TTTCATCTAATGTATGGAAT+TGG | - | tig0023279:85607-85626 | Msa1407300:intron | 25.0% |
| !! | ATAATCTTGCTATGGAAAAT+GGG | - | tig0023279:85683-85702 | Msa1407300:intron | 25.0% |
| ! | ACACTTTCTCTATCTTTATT+AGG | + | tig0023279:84594-84613 | None:intergenic | 25.0% |
| ! | GTTGAAAAAATATGTGAAGT+TGG | - | tig0023279:84621-84640 | Msa1407300:CDS | 25.0% |
| ! | ACTAAAACTGGTAGAAAAAA+TGG | - | tig0023279:85039-85058 | Msa1407300:CDS | 25.0% |
| ! | TACATTAGATGAAATCCAAA+CGG | + | tig0023279:85601-85620 | None:intergenic | 25.0% |
| ! | TTTGGATTTCATCTAATGTA+TGG | - | tig0023279:85601-85620 | Msa1407300:intron | 25.0% |
| ! | TTTCATCTAATGTATGGAAT+TGG | - | tig0023279:85607-85626 | Msa1407300:intron | 25.0% |
| !! | ATAATCTTGCTATGGAAAAT+GGG | - | tig0023279:85683-85702 | Msa1407300:intron | 25.0% |
| !! | ACTAAACTAGCCTATGTTTT+AGG | - | tig0023279:84977-84996 | Msa1407300:CDS | 30.0% |
| AACTCTTAAGCCTAAAACAT+AGG | + | tig0023279:84990-85009 | None:intergenic | 30.0% | |
| TTCTCCAAATCATAGAAGAA+TGG | - | tig0023279:85009-85028 | Msa1407300:CDS | 30.0% | |
| TCTCCAAATCATAGAAGAAT+GGG | - | tig0023279:85010-85029 | Msa1407300:CDS | 30.0% | |
| ATTCCCATTCTTCTATGATT+TGG | + | tig0023279:85016-85035 | None:intergenic | 30.0% | |
| AATCATAGAAGAATGGGAAT+AGG | - | tig0023279:85016-85035 | Msa1407300:CDS | 30.0% | |
| TGGTAGAAAAAATGGAACAA+TGG | - | tig0023279:85047-85066 | Msa1407300:CDS | 30.0% | |
| ! | GAGTTTAAGGATTGTTACTT+TGG | + | tig0023279:85230-85249 | None:intergenic | 30.0% |
| !! | ATCGAAGGTAATTTTAACCA+AGG | + | tig0023279:85562-85581 | None:intergenic | 30.0% |
| TTGAAAAAATTCGGAATCGA+AGG | + | tig0023279:85577-85596 | None:intergenic | 30.0% | |
| CCAAACGGTTTGAAAAAATT+CGG | + | tig0023279:85586-85605 | None:intergenic | 30.0% | |
| ATCTAATGTATGGAATTGGT+GGG | - | tig0023279:85611-85630 | Msa1407300:intron | 30.0% | |
| ! | TTTTGCTCATAATCTTGCTA+TGG | - | tig0023279:85675-85694 | Msa1407300:intron | 30.0% |
| ! | CATAATCTTGCTATGGAAAA+TGG | - | tig0023279:85682-85701 | Msa1407300:intron | 30.0% |
| TTGTGGTGTATTAAGAGATT+AGG | - | tig0023279:85793-85812 | Msa1407300:CDS | 30.0% | |
| TGTGGTGTATTAAGAGATTA+GGG | - | tig0023279:85794-85813 | Msa1407300:CDS | 30.0% | |
| !! | ACTAAACTAGCCTATGTTTT+AGG | - | tig0023279:84977-84996 | Msa1407300:CDS | 30.0% |
| AACTCTTAAGCCTAAAACAT+AGG | + | tig0023279:84990-85009 | None:intergenic | 30.0% | |
| TTCTCCAAATCATAGAAGAA+TGG | - | tig0023279:85009-85028 | Msa1407300:CDS | 30.0% | |
| TCTCCAAATCATAGAAGAAT+GGG | - | tig0023279:85010-85029 | Msa1407300:CDS | 30.0% | |
| ATTCCCATTCTTCTATGATT+TGG | + | tig0023279:85016-85035 | None:intergenic | 30.0% | |
| AATCATAGAAGAATGGGAAT+AGG | - | tig0023279:85016-85035 | Msa1407300:CDS | 30.0% | |
| TGGTAGAAAAAATGGAACAA+TGG | - | tig0023279:85047-85066 | Msa1407300:CDS | 30.0% | |
| ! | GAGTTTAAGGATTGTTACTT+TGG | + | tig0023279:85230-85249 | None:intergenic | 30.0% |
| !! | ATCGAAGGTAATTTTAACCA+AGG | + | tig0023279:85562-85581 | None:intergenic | 30.0% |
| TTGAAAAAATTCGGAATCGA+AGG | + | tig0023279:85577-85596 | None:intergenic | 30.0% | |
| CCAAACGGTTTGAAAAAATT+CGG | + | tig0023279:85586-85605 | None:intergenic | 30.0% | |
| ATCTAATGTATGGAATTGGT+GGG | - | tig0023279:85611-85630 | Msa1407300:intron | 30.0% | |
| ! | TTTTGCTCATAATCTTGCTA+TGG | - | tig0023279:85675-85694 | Msa1407300:intron | 30.0% |
| ! | CATAATCTTGCTATGGAAAA+TGG | - | tig0023279:85682-85701 | Msa1407300:intron | 30.0% |
| TTGTGGTGTATTAAGAGATT+AGG | - | tig0023279:85793-85812 | Msa1407300:CDS | 30.0% | |
| TGTGGTGTATTAAGAGATTA+GGG | - | tig0023279:85794-85813 | Msa1407300:CDS | 30.0% | |
| !! | TGAGAAAAGTTGGTGAGTTA+CGG | + | tig0023279:84704-84723 | None:intergenic | 35.0% |
| !!! | AATTTTCAGGTAGCAGAGAT+AGG | - | tig0023279:84833-84852 | Msa1407300:CDS | 35.0% |
| TGTATCAAAACCGTTACATG+CGG | - | tig0023279:84884-84903 | Msa1407300:CDS | 35.0% | |
| !!! | TCTGTGATGGTGTTTTTTGT+TGG | + | tig0023279:84926-84945 | None:intergenic | 35.0% |
| !! | AGGCTAGTTTAGTGAAAACA+GGG | + | tig0023279:84970-84989 | None:intergenic | 35.0% |
| !! | TAGGCTAGTTTAGTGAAAAC+AGG | + | tig0023279:84971-84990 | None:intergenic | 35.0% |
| AATGGGAATAGGACTAAAAC+TGG | - | tig0023279:85027-85046 | Msa1407300:CDS | 35.0% | |
| GAACAATGGTTTCGTGAAAA+TGG | - | tig0023279:85061-85080 | Msa1407300:CDS | 35.0% | |
| ! | AAACTTTTCACCGACAAATG+TGG | - | tig0023279:85133-85152 | Msa1407300:CDS | 35.0% |
| CTTTGAGTAACCACATTTGT+CGG | + | tig0023279:85146-85165 | None:intergenic | 35.0% | |
| ! | TTTGAGACGGTGTTTGAAAA+CGG | + | tig0023279:85197-85216 | None:intergenic | 35.0% |
| AAAACAGAATCAATGTCACG+AGG | + | tig0023279:85310-85329 | None:intergenic | 35.0% | |
| !!! | CCGAATTTTTTCAAACCGTT+TGG | - | tig0023279:85583-85602 | Msa1407300:CDS | 35.0% |
| CATCTAATGTATGGAATTGG+TGG | - | tig0023279:85610-85629 | Msa1407300:intron | 35.0% | |
| TCTAATGTATGGAATTGGTG+GGG | - | tig0023279:85612-85631 | Msa1407300:intron | 35.0% | |
| TGAGGAATAGCAAAACGTAA+CGG | + | tig0023279:85745-85764 | None:intergenic | 35.0% | |
| !!! | TACGTTTTGCTATTCCTCAT+TGG | - | tig0023279:85746-85765 | Msa1407300:CDS | 35.0% |
| !!! | TTTTGCTATTCCTCATTGGA+AGG | - | tig0023279:85750-85769 | Msa1407300:CDS | 35.0% |
| TGTCTTGTGAAGAAGATTTG+TGG | - | tig0023279:85776-85795 | Msa1407300:CDS | 35.0% | |
| GTGGTGTATTAAGAGATTAG+GGG | - | tig0023279:85795-85814 | Msa1407300:CDS | 35.0% | |
| TTAGGGGAAGATTATAGTGA+TGG | - | tig0023279:85811-85830 | Msa1407300:CDS | 35.0% | |
| ! | GATTATAGTGATGGTTCTGT+TGG | - | tig0023279:85820-85839 | Msa1407300:CDS | 35.0% |
| ATTGGACTAAATCCAAACCT+GGG | - | tig0023279:85845-85864 | Msa1407300:CDS | 35.0% | |
| !! | TGAGAAAAGTTGGTGAGTTA+CGG | + | tig0023279:84704-84723 | None:intergenic | 35.0% |
| !!! | AATTTTCAGGTAGCAGAGAT+AGG | - | tig0023279:84833-84852 | Msa1407300:CDS | 35.0% |
| TGTATCAAAACCGTTACATG+CGG | - | tig0023279:84884-84903 | Msa1407300:CDS | 35.0% | |
| !!! | TCTGTGATGGTGTTTTTTGT+TGG | + | tig0023279:84926-84945 | None:intergenic | 35.0% |
| !! | AGGCTAGTTTAGTGAAAACA+GGG | + | tig0023279:84970-84989 | None:intergenic | 35.0% |
| !! | TAGGCTAGTTTAGTGAAAAC+AGG | + | tig0023279:84971-84990 | None:intergenic | 35.0% |
| AATGGGAATAGGACTAAAAC+TGG | - | tig0023279:85027-85046 | Msa1407300:CDS | 35.0% | |
| GAACAATGGTTTCGTGAAAA+TGG | - | tig0023279:85061-85080 | Msa1407300:CDS | 35.0% | |
| ! | AAACTTTTCACCGACAAATG+TGG | - | tig0023279:85133-85152 | Msa1407300:CDS | 35.0% |
| CTTTGAGTAACCACATTTGT+CGG | + | tig0023279:85146-85165 | None:intergenic | 35.0% | |
| ! | TTTGAGACGGTGTTTGAAAA+CGG | + | tig0023279:85197-85216 | None:intergenic | 35.0% |
| AAAACAGAATCAATGTCACG+AGG | + | tig0023279:85310-85329 | None:intergenic | 35.0% | |
| !!! | CCGAATTTTTTCAAACCGTT+TGG | - | tig0023279:85583-85602 | Msa1407300:CDS | 35.0% |
| CATCTAATGTATGGAATTGG+TGG | - | tig0023279:85610-85629 | Msa1407300:intron | 35.0% | |
| TCTAATGTATGGAATTGGTG+GGG | - | tig0023279:85612-85631 | Msa1407300:intron | 35.0% | |
| TGAGGAATAGCAAAACGTAA+CGG | + | tig0023279:85745-85764 | None:intergenic | 35.0% | |
| !!! | TACGTTTTGCTATTCCTCAT+TGG | - | tig0023279:85746-85765 | Msa1407300:CDS | 35.0% |
| !!! | TTTTGCTATTCCTCATTGGA+AGG | - | tig0023279:85750-85769 | Msa1407300:CDS | 35.0% |
| TGTCTTGTGAAGAAGATTTG+TGG | - | tig0023279:85776-85795 | Msa1407300:CDS | 35.0% | |
| GTGGTGTATTAAGAGATTAG+GGG | - | tig0023279:85795-85814 | Msa1407300:CDS | 35.0% | |
| TTAGGGGAAGATTATAGTGA+TGG | - | tig0023279:85811-85830 | Msa1407300:CDS | 35.0% | |
| ! | GATTATAGTGATGGTTCTGT+TGG | - | tig0023279:85820-85839 | Msa1407300:CDS | 35.0% |
| ATTGGACTAAATCCAAACCT+GGG | - | tig0023279:85845-85864 | Msa1407300:CDS | 35.0% | |
| AAGAGGGAAAGTTTACCACT+GGG | + | tig0023279:84648-84667 | None:intergenic | 40.0% | |
| CTTACCAGCATGAGAAAAGT+TGG | + | tig0023279:84714-84733 | None:intergenic | 40.0% | |
| !!! | GAGTTTTTTGCCGCATGTAA+CGG | + | tig0023279:84897-84916 | None:intergenic | 40.0% |
| !! | GGAATTTGGTGTTTCTGTGA+TGG | + | tig0023279:84939-84958 | None:intergenic | 40.0% |
| ACAGGGACATGATTGGAATT+TGG | + | tig0023279:84953-84972 | None:intergenic | 40.0% | |
| AGTGAAAACAGGGACATGAT+TGG | + | tig0023279:84960-84979 | None:intergenic | 40.0% | |
| ! | TGGTGCTGAGTATTCATACA+TGG | - | tig0023279:85081-85100 | Msa1407300:CDS | 40.0% |
| TAACAAGGATTGACGGTGTA+CGG | + | tig0023279:85171-85190 | None:intergenic | 40.0% | |
| GTTTGAAAACGGGGTTAACA+AGG | + | tig0023279:85186-85205 | None:intergenic | 40.0% | |
| TTGAGACGGTGTTTGAAAAC+GGG | + | tig0023279:85196-85215 | None:intergenic | 40.0% | |
| !!! | TGGACGATGATGTTTTGAGA+CGG | + | tig0023279:85210-85229 | None:intergenic | 40.0% |
| TATAGCAATTCAGCGTCGTT+TGG | + | tig0023279:85256-85275 | None:intergenic | 40.0% | |
| ! | CAGTGGTGGAGAATTTGTAA+CGG | + | tig0023279:85279-85298 | None:intergenic | 40.0% |
| ! | ATATTTTCCGTCTCTCGGAA+CGG | + | tig0023279:85365-85384 | None:intergenic | 40.0% |
| TTCCGAGAGACGGAAAATAT+GGG | - | tig0023279:85365-85384 | Msa1407300:CDS | 40.0% | |
| TGGGTCCGTTAAAAAGCTTT+CGG | + | tig0023279:85416-85435 | None:intergenic | 40.0% | |
| GTGTTTACCCTCGAAGTAAA+AGG | - | tig0023279:85478-85497 | Msa1407300:CDS | 40.0% | |
| TGATAGACAAGGCTTTACCT+TGG | - | tig0023279:85542-85561 | Msa1407300:CDS | 40.0% | |
| TTCACCATCTTCAACACTTC+TGG | + | tig0023279:85643-85662 | None:intergenic | 40.0% | |
| ! | AAGATGGTGAAAGCTTTGTG+TGG | - | tig0023279:85652-85671 | Msa1407300:intron | 40.0% |
| CAAGACAAAACCTTCCAATG+AGG | + | tig0023279:85763-85782 | None:intergenic | 40.0% | |
| GATTGGACTAAATCCAAACC+TGG | - | tig0023279:85844-85863 | Msa1407300:CDS | 40.0% | |
| AAAAATGGAGAACCCAGGTT+TGG | + | tig0023279:85860-85879 | None:intergenic | 40.0% | |
| TCAACAAAAATGGAGAACCC+AGG | + | tig0023279:85865-85884 | None:intergenic | 40.0% | |
| !! | CTCTCTAGGGTCAACAAAAA+TGG | + | tig0023279:85875-85894 | None:intergenic | 40.0% |
| AAGAGGGAAAGTTTACCACT+GGG | + | tig0023279:84648-84667 | None:intergenic | 40.0% | |
| CTTACCAGCATGAGAAAAGT+TGG | + | tig0023279:84714-84733 | None:intergenic | 40.0% | |
| !!! | GAGTTTTTTGCCGCATGTAA+CGG | + | tig0023279:84897-84916 | None:intergenic | 40.0% |
| !! | GGAATTTGGTGTTTCTGTGA+TGG | + | tig0023279:84939-84958 | None:intergenic | 40.0% |
| ACAGGGACATGATTGGAATT+TGG | + | tig0023279:84953-84972 | None:intergenic | 40.0% | |
| AGTGAAAACAGGGACATGAT+TGG | + | tig0023279:84960-84979 | None:intergenic | 40.0% | |
| ! | TGGTGCTGAGTATTCATACA+TGG | - | tig0023279:85081-85100 | Msa1407300:CDS | 40.0% |
| TAACAAGGATTGACGGTGTA+CGG | + | tig0023279:85171-85190 | None:intergenic | 40.0% | |
| GTTTGAAAACGGGGTTAACA+AGG | + | tig0023279:85186-85205 | None:intergenic | 40.0% | |
| TTGAGACGGTGTTTGAAAAC+GGG | + | tig0023279:85196-85215 | None:intergenic | 40.0% | |
| !!! | TGGACGATGATGTTTTGAGA+CGG | + | tig0023279:85210-85229 | None:intergenic | 40.0% |
| TATAGCAATTCAGCGTCGTT+TGG | + | tig0023279:85256-85275 | None:intergenic | 40.0% | |
| ! | CAGTGGTGGAGAATTTGTAA+CGG | + | tig0023279:85279-85298 | None:intergenic | 40.0% |
| ! | ATATTTTCCGTCTCTCGGAA+CGG | + | tig0023279:85365-85384 | None:intergenic | 40.0% |
| TTCCGAGAGACGGAAAATAT+GGG | - | tig0023279:85365-85384 | Msa1407300:CDS | 40.0% | |
| TGGGTCCGTTAAAAAGCTTT+CGG | + | tig0023279:85416-85435 | None:intergenic | 40.0% | |
| GTGTTTACCCTCGAAGTAAA+AGG | - | tig0023279:85478-85497 | Msa1407300:CDS | 40.0% | |
| TGATAGACAAGGCTTTACCT+TGG | - | tig0023279:85542-85561 | Msa1407300:CDS | 40.0% | |
| TTCACCATCTTCAACACTTC+TGG | + | tig0023279:85643-85662 | None:intergenic | 40.0% | |
| ! | AAGATGGTGAAAGCTTTGTG+TGG | - | tig0023279:85652-85671 | Msa1407300:intron | 40.0% |
| CAAGACAAAACCTTCCAATG+AGG | + | tig0023279:85763-85782 | None:intergenic | 40.0% | |
| GATTGGACTAAATCCAAACC+TGG | - | tig0023279:85844-85863 | Msa1407300:CDS | 40.0% | |
| AAAAATGGAGAACCCAGGTT+TGG | + | tig0023279:85860-85879 | None:intergenic | 40.0% | |
| TCAACAAAAATGGAGAACCC+AGG | + | tig0023279:85865-85884 | None:intergenic | 40.0% | |
| !! | CTCTCTAGGGTCAACAAAAA+TGG | + | tig0023279:85875-85894 | None:intergenic | 40.0% |
| ATATGTGAAGTTGGACCCAG+TGG | - | tig0023279:84630-84649 | Msa1407300:CDS | 45.0% | |
| GAAGAGGGAAAGTTTACCAC+TGG | + | tig0023279:84649-84668 | None:intergenic | 45.0% | |
| AATAGCGTCACCTTGCAAGT+CGG | + | tig0023279:84673-84692 | None:intergenic | 45.0% | |
| ! | CTCACCAACTTTTCTCATGC+TGG | - | tig0023279:84707-84726 | Msa1407300:CDS | 45.0% |
| GAGATAGGCAATGAGACAGT+CGG | - | tig0023279:84848-84867 | Msa1407300:CDS | 45.0% | |
| ACGGGGTTAACAAGGATTGA+CGG | + | tig0023279:85178-85197 | None:intergenic | 45.0% | |
| TGAGACGGTGTTTGAAAACG+GGG | + | tig0023279:85195-85214 | None:intergenic | 45.0% | |
| !! | CGTCGTTTGGTGTGAGTTTA+AGG | + | tig0023279:85243-85262 | None:intergenic | 45.0% |
| ACGAGGAAAAAACTCAGTGG+TGG | + | tig0023279:85293-85312 | None:intergenic | 45.0% | |
| GTCACGAGGAAAAAACTCAG+TGG | + | tig0023279:85296-85315 | None:intergenic | 45.0% | |
| GTTCCGAGAGACGGAAAATA+TGG | - | tig0023279:85364-85383 | Msa1407300:CDS | 45.0% | |
| TCCGAGAGACGGAAAATATG+GGG | - | tig0023279:85366-85385 | Msa1407300:CDS | 45.0% | |
| ATGGGGCCGGATCAAATAAT+TGG | - | tig0023279:85383-85402 | Msa1407300:CDS | 45.0% | |
| GCCGGATCAAATAATTGGTC+CGG | - | tig0023279:85388-85407 | Msa1407300:CDS | 45.0% | |
| GCCGGACCAATTATTTGATC+CGG | + | tig0023279:85392-85411 | None:intergenic | 45.0% | |
| CGTTAAAAAGCTTTCGGAGC+CGG | + | tig0023279:85410-85429 | None:intergenic | 45.0% | |
| ! | CGGCTCCGAAAGCTTTTTAA+CGG | - | tig0023279:85408-85427 | Msa1407300:CDS | 45.0% |
| CTTACTAAAGCCCACGAACT+CGG | + | tig0023279:85439-85458 | None:intergenic | 45.0% | |
| ! | CGTGGGCTTTAGTAAGTGTT+TGG | - | tig0023279:85443-85462 | Msa1407300:CDS | 45.0% |
| AACAACTCGCGTGATAGACA+AGG | - | tig0023279:85531-85550 | Msa1407300:CDS | 45.0% | |
| ATGTATGGAATTGGTGGGGA+AGG | - | tig0023279:85616-85635 | Msa1407300:intron | 45.0% | |
| !! | AGGACCAGAAGTGTTGAAGA+TGG | - | tig0023279:85636-85655 | Msa1407300:intron | 45.0% |
| !! | GTGATGGTTCTGTTGGTGAT+TGG | - | tig0023279:85827-85846 | Msa1407300:CDS | 45.0% |
| ATATGTGAAGTTGGACCCAG+TGG | - | tig0023279:84630-84649 | Msa1407300:CDS | 45.0% | |
| GAAGAGGGAAAGTTTACCAC+TGG | + | tig0023279:84649-84668 | None:intergenic | 45.0% | |
| AATAGCGTCACCTTGCAAGT+CGG | + | tig0023279:84673-84692 | None:intergenic | 45.0% | |
| ! | CTCACCAACTTTTCTCATGC+TGG | - | tig0023279:84707-84726 | Msa1407300:CDS | 45.0% |
| GAGATAGGCAATGAGACAGT+CGG | - | tig0023279:84848-84867 | Msa1407300:CDS | 45.0% | |
| ACGGGGTTAACAAGGATTGA+CGG | + | tig0023279:85178-85197 | None:intergenic | 45.0% | |
| TGAGACGGTGTTTGAAAACG+GGG | + | tig0023279:85195-85214 | None:intergenic | 45.0% | |
| !! | CGTCGTTTGGTGTGAGTTTA+AGG | + | tig0023279:85243-85262 | None:intergenic | 45.0% |
| ACGAGGAAAAAACTCAGTGG+TGG | + | tig0023279:85293-85312 | None:intergenic | 45.0% | |
| GTCACGAGGAAAAAACTCAG+TGG | + | tig0023279:85296-85315 | None:intergenic | 45.0% | |
| GTTCCGAGAGACGGAAAATA+TGG | - | tig0023279:85364-85383 | Msa1407300:CDS | 45.0% | |
| TCCGAGAGACGGAAAATATG+GGG | - | tig0023279:85366-85385 | Msa1407300:CDS | 45.0% | |
| ATGGGGCCGGATCAAATAAT+TGG | - | tig0023279:85383-85402 | Msa1407300:CDS | 45.0% | |
| GCCGGATCAAATAATTGGTC+CGG | - | tig0023279:85388-85407 | Msa1407300:CDS | 45.0% | |
| GCCGGACCAATTATTTGATC+CGG | + | tig0023279:85392-85411 | None:intergenic | 45.0% | |
| CGTTAAAAAGCTTTCGGAGC+CGG | + | tig0023279:85410-85429 | None:intergenic | 45.0% | |
| ! | CGGCTCCGAAAGCTTTTTAA+CGG | - | tig0023279:85408-85427 | Msa1407300:CDS | 45.0% |
| CTTACTAAAGCCCACGAACT+CGG | + | tig0023279:85439-85458 | None:intergenic | 45.0% | |
| ! | CGTGGGCTTTAGTAAGTGTT+TGG | - | tig0023279:85443-85462 | Msa1407300:CDS | 45.0% |
| AACAACTCGCGTGATAGACA+AGG | - | tig0023279:85531-85550 | Msa1407300:CDS | 45.0% | |
| ATGTATGGAATTGGTGGGGA+AGG | - | tig0023279:85616-85635 | Msa1407300:intron | 45.0% | |
| !! | AGGACCAGAAGTGTTGAAGA+TGG | - | tig0023279:85636-85655 | Msa1407300:intron | 45.0% |
| !! | GTGATGGTTCTGTTGGTGAT+TGG | - | tig0023279:85827-85846 | Msa1407300:CDS | 45.0% |
| ACCTTGCAAGTCGGTGAAGA+GGG | + | tig0023279:84664-84683 | None:intergenic | 50.0% | |
| GAGACAGTCGGAATGATACG+AGG | - | tig0023279:84860-84879 | Msa1407300:CDS | 50.0% | |
| TTCTTAGCCGTTCCGAGAGA+CGG | - | tig0023279:85355-85374 | Msa1407300:CDS | 50.0% | |
| ! | GCCCCATATTTTCCGTCTCT+CGG | + | tig0023279:85370-85389 | None:intergenic | 50.0% |
| AGAGACGGAAAATATGGGGC+CGG | - | tig0023279:85370-85389 | Msa1407300:CDS | 50.0% | |
| TTGCTAACACACGTCTCACG+CGG | + | tig0023279:85510-85529 | None:intergenic | 50.0% | |
| GGAAAATGGGTGTAGTGCTG+TGG | - | tig0023279:85696-85715 | Msa1407300:intron | 50.0% | |
| ACCTTGCAAGTCGGTGAAGA+GGG | + | tig0023279:84664-84683 | None:intergenic | 50.0% | |
| GAGACAGTCGGAATGATACG+AGG | - | tig0023279:84860-84879 | Msa1407300:CDS | 50.0% | |
| TTCTTAGCCGTTCCGAGAGA+CGG | - | tig0023279:85355-85374 | Msa1407300:CDS | 50.0% | |
| ! | GCCCCATATTTTCCGTCTCT+CGG | + | tig0023279:85370-85389 | None:intergenic | 50.0% |
| AGAGACGGAAAATATGGGGC+CGG | - | tig0023279:85370-85389 | Msa1407300:CDS | 50.0% | |
| TTGCTAACACACGTCTCACG+CGG | + | tig0023279:85510-85529 | None:intergenic | 50.0% | |
| GGAAAATGGGTGTAGTGCTG+TGG | - | tig0023279:85696-85715 | Msa1407300:intron | 50.0% | |
| !! | TCCCTCTTCACCGACTTGCA+AGG | - | tig0023279:84660-84679 | Msa1407300:CDS | 55.0% |
| CACCTTGCAAGTCGGTGAAG+AGG | + | tig0023279:84665-84684 | None:intergenic | 55.0% | |
| GTCTCTCGGAACGGCTAAGA+AGG | + | tig0023279:85356-85375 | None:intergenic | 55.0% | |
| CTAAAGCCCACGAACTCGGT+GGG | + | tig0023279:85435-85454 | None:intergenic | 55.0% | |
| ACTAAAGCCCACGAACTCGG+TGG | + | tig0023279:85436-85455 | None:intergenic | 55.0% | |
| ! | GGACGCGCCTTTTACTTCGA+GGG | + | tig0023279:85488-85507 | None:intergenic | 55.0% |
| TGCTAACACACGTCTCACGC+GGG | + | tig0023279:85509-85528 | None:intergenic | 55.0% | |
| !! | TCCCTCTTCACCGACTTGCA+AGG | - | tig0023279:84660-84679 | Msa1407300:CDS | 55.0% |
| CACCTTGCAAGTCGGTGAAG+AGG | + | tig0023279:84665-84684 | None:intergenic | 55.0% | |
| GTCTCTCGGAACGGCTAAGA+AGG | + | tig0023279:85356-85375 | None:intergenic | 55.0% | |
| CTAAAGCCCACGAACTCGGT+GGG | + | tig0023279:85435-85454 | None:intergenic | 55.0% | |
| ACTAAAGCCCACGAACTCGG+TGG | + | tig0023279:85436-85455 | None:intergenic | 55.0% | |
| ! | GGACGCGCCTTTTACTTCGA+GGG | + | tig0023279:85488-85507 | None:intergenic | 55.0% |
| TGCTAACACACGTCTCACGC+GGG | + | tig0023279:85509-85528 | None:intergenic | 55.0% | |
| ! | TAACGGACCCACCGAGTTCG+TGG | - | tig0023279:85425-85444 | Msa1407300:CDS | 60.0% |
| AACGGACCCACCGAGTTCGT+GGG | - | tig0023279:85426-85445 | Msa1407300:CDS | 60.0% | |
| ! | GGGACGCGCCTTTTACTTCG+AGG | + | tig0023279:85489-85508 | None:intergenic | 60.0% |
| ! | TAACGGACCCACCGAGTTCG+TGG | - | tig0023279:85425-85444 | Msa1407300:CDS | 60.0% |
| AACGGACCCACCGAGTTCGT+GGG | - | tig0023279:85426-85445 | Msa1407300:CDS | 60.0% | |
| ! | GGGACGCGCCTTTTACTTCG+AGG | + | tig0023279:85489-85508 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023279 | gene | 84555 | 85900 | 84555 | ID=Msa1407300;Name=Msa1407300 |
| tig0023279 | mRNA | 84555 | 85900 | 84555 | ID=Msa1407300-mRNA-1;Parent=Msa1407300;Name=Msa1407300-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|410 |
| tig0023279 | exon | 85727 | 85900 | 85727 | ID=Msa1407300-mRNA-1:exon:25008;Parent=Msa1407300-mRNA-1 |
| tig0023279 | exon | 84555 | 85613 | 84555 | ID=Msa1407300-mRNA-1:exon:25007;Parent=Msa1407300-mRNA-1 |
| tig0023279 | CDS | 85727 | 85900 | 85727 | ID=Msa1407300-mRNA-1:cds;Parent=Msa1407300-mRNA-1 |
| tig0023279 | CDS | 84555 | 85613 | 84555 | ID=Msa1407300-mRNA-1:cds;Parent=Msa1407300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
