Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1301030 | sp|Q9ZRF1|MTDH_FRAAN | 77.809 | 356 | 79 | 0 | 6 | 361 | 4 | 359 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1301030 | G7JFC2 | 96.399 | 361 | 13 | 0 | 1 | 361 | 1 | 361 | 0.0 | 723 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046680 | Msa1301030 | -0.813808 | 2.122062e-51 | -8.615850e-47 |
| Msa1261860 | Msa1301030 | 0.996037 | 1.138603e-222 | -8.615850e-47 |
| Msa1301030 | Msa1327400 | 0.800583 | 1.346379e-48 | -8.615850e-47 |
| Msa0466850 | Msa1301030 | -0.814679 | 1.362837e-51 | -8.615850e-47 |
| Msa0513670 | Msa1301030 | -0.812988 | 3.213439e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1301030 | MtrunA17_Chr4g0064291 | 96.399 | 361 | 13 | 0 | 1 | 361 | 1 | 361 | 0.0 | 723 |
| Msa1301030 | MtrunA17_Chr5g0411821 | 83.380 | 361 | 60 | 0 | 1 | 361 | 1 | 361 | 0.0 | 620 |
| Msa1301030 | MtrunA17_Chr5g0411841 | 81.994 | 361 | 65 | 0 | 1 | 361 | 1 | 361 | 0.0 | 598 |
| Msa1301030 | MtrunA17_Chr5g0411901 | 82.203 | 354 | 63 | 0 | 7 | 360 | 8 | 361 | 0.0 | 595 |
| Msa1301030 | MtrunA17_Chr5g0411811 | 82.271 | 361 | 64 | 0 | 1 | 361 | 1 | 361 | 0.0 | 595 |
| Msa1301030 | MtrunA17_Chr5g0411881 | 81.356 | 354 | 66 | 0 | 7 | 360 | 8 | 361 | 0.0 | 590 |
| Msa1301030 | MtrunA17_Chr5g0411871 | 79.096 | 354 | 74 | 0 | 8 | 361 | 23 | 376 | 0.0 | 582 |
| Msa1301030 | MtrunA17_Chr5g0411931 | 80.055 | 361 | 72 | 0 | 1 | 361 | 1 | 361 | 0.0 | 581 |
| Msa1301030 | MtrunA17_Chr5g0411911 | 77.778 | 351 | 78 | 0 | 10 | 360 | 12 | 362 | 0.0 | 563 |
| Msa1301030 | MtrunA17_Chr5g0411801 | 75.346 | 361 | 89 | 0 | 1 | 361 | 33 | 393 | 0.0 | 556 |
| Msa1301030 | MtrunA17_Chr8g0367151 | 77.222 | 360 | 82 | 0 | 1 | 360 | 1 | 360 | 0.0 | 541 |
| Msa1301030 | MtrunA17_Chr5g0411791 | 76.900 | 329 | 76 | 0 | 33 | 361 | 7 | 335 | 1.53e-172 | 483 |
| Msa1301030 | MtrunA17_Chr8g0383721 | 64.426 | 357 | 126 | 1 | 1 | 357 | 1 | 356 | 7.17e-160 | 452 |
| Msa1301030 | MtrunA17_Chr5g0411941 | 63.188 | 345 | 127 | 0 | 14 | 358 | 14 | 358 | 1.79e-147 | 421 |
| Msa1301030 | MtrunA17_Chr1g0157021 | 57.184 | 348 | 148 | 1 | 9 | 355 | 8 | 355 | 5.68e-132 | 381 |
| Msa1301030 | MtrunA17_Chr1g0208031 | 50.992 | 353 | 171 | 1 | 1 | 353 | 1 | 351 | 1.70e-119 | 349 |
| Msa1301030 | MtrunA17_Chr2g0279791 | 53.468 | 346 | 159 | 2 | 14 | 358 | 62 | 406 | 1.61e-115 | 341 |
| Msa1301030 | MtrunA17_Chr2g0279801 | 51.923 | 208 | 87 | 3 | 152 | 358 | 19 | 214 | 1.90e-56 | 183 |
| Msa1301030 | MtrunA17_Chr5g0411851 | 80.282 | 71 | 14 | 0 | 1 | 71 | 1 | 71 | 5.83e-38 | 132 |
| Msa1301030 | MtrunA17_Chr5g0411861 | 82.812 | 64 | 11 | 0 | 297 | 360 | 1 | 64 | 1.63e-30 | 110 |
| Msa1301030 | MtrunA17_Chr8g0385221 | 26.667 | 330 | 212 | 8 | 10 | 312 | 51 | 377 | 3.93e-24 | 102 |
| Msa1301030 | MtrunA17_Chr4g0021211 | 27.063 | 303 | 195 | 9 | 38 | 318 | 60 | 358 | 3.79e-20 | 90.9 |
| Msa1301030 | MtrunA17_Chr3g0125961 | 24.496 | 347 | 227 | 10 | 39 | 354 | 37 | 379 | 7.29e-17 | 81.3 |
| Msa1301030 | MtrunA17_Chr3g0125911 | 24.107 | 336 | 223 | 8 | 39 | 344 | 37 | 370 | 1.78e-16 | 80.1 |
| Msa1301030 | MtrunA17_Chr3g0125941 | 23.810 | 336 | 224 | 8 | 39 | 344 | 38 | 371 | 1.82e-15 | 77.0 |
| Msa1301030 | MtrunA17_Chr7g0242291 | 26.979 | 341 | 205 | 13 | 39 | 341 | 48 | 382 | 9.25e-15 | 75.1 |
| Msa1301030 | MtrunA17_Chr7g0262421 | 26.959 | 319 | 194 | 12 | 39 | 327 | 38 | 347 | 5.69e-14 | 72.4 |
| Msa1301030 | MtrunA17_Chr5g0419681 | 24.169 | 331 | 216 | 10 | 38 | 338 | 35 | 360 | 8.13e-14 | 72.0 |
| Msa1301030 | MtrunA17_Chr1g0183131 | 26.936 | 297 | 183 | 11 | 39 | 307 | 36 | 326 | 7.53e-13 | 68.9 |
| Msa1301030 | MtrunA17_Chr3g0132351 | 27.419 | 310 | 193 | 10 | 39 | 319 | 44 | 350 | 2.17e-12 | 67.8 |
| Msa1301030 | MtrunA17_Chr3g0118441 | 25.926 | 297 | 190 | 10 | 38 | 307 | 40 | 333 | 2.85e-12 | 67.4 |
| Msa1301030 | MtrunA17_Chr5g0440521 | 23.667 | 300 | 201 | 8 | 39 | 312 | 46 | 343 | 3.08e-11 | 64.3 |
| Msa1301030 | MtrunA17_Chr5g0411921 | 62.791 | 43 | 16 | 0 | 76 | 118 | 3 | 45 | 4.24e-11 | 62.4 |
| Msa1301030 | MtrunA17_Chr7g0242301 | 25.680 | 331 | 189 | 13 | 39 | 341 | 13 | 314 | 4.35e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1301030 | AT4G37980.1 | 70.402 | 348 | 103 | 0 | 13 | 360 | 9 | 356 | 1.26e-171 | 482 |
| Msa1301030 | AT4G37990.1 | 70.402 | 348 | 103 | 0 | 13 | 360 | 9 | 356 | 1.00e-167 | 472 |
| Msa1301030 | AT4G37970.1 | 62.535 | 355 | 133 | 0 | 6 | 360 | 7 | 361 | 1.79e-163 | 462 |
| Msa1301030 | AT4G39330.1 | 61.838 | 359 | 137 | 0 | 1 | 359 | 1 | 359 | 3.17e-163 | 461 |
| Msa1301030 | AT2G21730.1 | 61.473 | 353 | 134 | 2 | 11 | 361 | 5 | 357 | 6.29e-154 | 438 |
| Msa1301030 | AT2G21890.1 | 61.648 | 352 | 134 | 1 | 11 | 361 | 5 | 356 | 8.90e-154 | 437 |
| Msa1301030 | AT4G37980.2 | 70.175 | 285 | 85 | 0 | 13 | 297 | 9 | 293 | 1.56e-133 | 383 |
| Msa1301030 | AT4G39330.2 | 61.130 | 301 | 117 | 0 | 1 | 301 | 1 | 301 | 3.38e-130 | 375 |
| Msa1301030 | AT4G37970.4 | 60.616 | 292 | 115 | 0 | 6 | 297 | 7 | 298 | 1.40e-125 | 363 |
| Msa1301030 | AT1G72680.1 | 52.299 | 348 | 165 | 1 | 11 | 358 | 9 | 355 | 4.87e-117 | 343 |
| Msa1301030 | AT3G19450.1 | 50.581 | 344 | 170 | 0 | 13 | 356 | 11 | 354 | 2.53e-109 | 324 |
| Msa1301030 | AT4G34230.1 | 52.802 | 339 | 160 | 0 | 15 | 353 | 12 | 350 | 2.52e-106 | 316 |
| Msa1301030 | AT4G34230.2 | 52.507 | 339 | 161 | 0 | 15 | 353 | 12 | 350 | 2.15e-105 | 314 |
| Msa1301030 | AT4G37970.3 | 60.251 | 239 | 95 | 0 | 6 | 244 | 7 | 245 | 1.17e-99 | 295 |
| Msa1301030 | AT4G37970.2 | 60.338 | 237 | 94 | 0 | 6 | 242 | 7 | 243 | 3.96e-99 | 294 |
| Msa1301030 | AT5G63620.1 | 29.181 | 281 | 167 | 9 | 25 | 278 | 70 | 345 | 1.03e-25 | 107 |
| Msa1301030 | AT5G63620.2 | 29.181 | 281 | 167 | 9 | 25 | 278 | 70 | 345 | 1.21e-25 | 107 |
| Msa1301030 | AT5G63620.3 | 30.000 | 240 | 141 | 8 | 25 | 242 | 70 | 304 | 5.49e-25 | 103 |
| Msa1301030 | AT1G64710.2 | 28.274 | 336 | 204 | 13 | 39 | 340 | 13 | 345 | 2.89e-20 | 91.3 |
| Msa1301030 | AT1G64710.1 | 29.293 | 297 | 179 | 11 | 39 | 307 | 36 | 329 | 3.68e-20 | 91.3 |
| Msa1301030 | AT1G22430.2 | 28.431 | 306 | 180 | 10 | 39 | 312 | 42 | 340 | 7.50e-20 | 90.5 |
| Msa1301030 | AT1G22430.1 | 28.431 | 306 | 180 | 10 | 39 | 312 | 42 | 340 | 7.50e-20 | 90.5 |
| Msa1301030 | AT1G32780.1 | 28.415 | 366 | 207 | 15 | 39 | 358 | 37 | 393 | 8.82e-18 | 84.3 |
| Msa1301030 | AT5G43940.1 | 26.689 | 296 | 185 | 9 | 39 | 307 | 36 | 326 | 6.19e-17 | 81.6 |
| Msa1301030 | AT5G43940.2 | 26.689 | 296 | 185 | 9 | 39 | 307 | 48 | 338 | 6.76e-17 | 81.6 |
| Msa1301030 | AT4G22110.2 | 25.872 | 344 | 208 | 13 | 39 | 343 | 43 | 378 | 3.21e-16 | 79.7 |
| Msa1301030 | AT4G22110.1 | 25.872 | 344 | 208 | 13 | 39 | 343 | 43 | 378 | 3.21e-16 | 79.7 |
| Msa1301030 | AT1G22430.3 | 29.412 | 204 | 117 | 5 | 39 | 221 | 42 | 239 | 2.37e-15 | 76.3 |
| Msa1301030 | AT1G22430.4 | 29.412 | 204 | 117 | 5 | 39 | 221 | 42 | 239 | 2.91e-15 | 75.9 |
| Msa1301030 | AT1G22430.5 | 29.412 | 204 | 117 | 5 | 39 | 221 | 42 | 239 | 2.91e-15 | 75.9 |
| Msa1301030 | AT1G77120.1 | 22.701 | 348 | 238 | 8 | 36 | 354 | 33 | 378 | 5.88e-15 | 75.9 |
| Msa1301030 | AT1G22440.1 | 26.923 | 312 | 177 | 13 | 39 | 312 | 40 | 338 | 9.70e-15 | 75.1 |
| Msa1301030 | AT4G22110.3 | 27.451 | 204 | 121 | 5 | 39 | 221 | 43 | 240 | 4.24e-13 | 69.3 |
| Msa1301030 | AT5G42250.1 | 24.579 | 297 | 193 | 9 | 39 | 307 | 45 | 338 | 6.72e-12 | 66.6 |
Find 113 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAGCCCTCTTCGATATTT+TGG | 0.136323 | 8_3:-62939364 | Msa1301030:CDS |
| CCCCGTCTTTACTTTACTTT+CGG | 0.214131 | 8_3:-62938934 | Msa1301030:CDS |
| CCCGTCTTTACTTTACTTTC+GGG | 0.233045 | 8_3:-62938933 | Msa1301030:intron |
| GTTAAGTTTGCTAAAGCTTT+TGG | 0.264666 | 8_3:-62939280 | Msa1301030:CDS |
| CATCCTCTCTCACCTCTAAT+TGG | 0.269489 | 8_3:-62939017 | Msa1301030:CDS |
| TATGTTGCTGAACTCTAATA+TGG | 0.307246 | 8_3:-62938394 | Msa1301030:three_prime_UTR |
| ATAGTAGCTGGAAGTAATAT+TGG | 0.310483 | 8_3:-62938656 | Msa1301030:CDS |
| TGTTCTTGTATTGAAGTATT+TGG | 0.322347 | 8_3:+62940615 | None:intergenic |
| TTTATACTTGCATCTTATCT+TGG | 0.330447 | 8_3:+62939167 | None:intergenic |
| AAAGTAGAAAAGTTTAAAGT+TGG | 0.357138 | 8_3:-62939628 | Msa1301030:CDS |
| TGAATTCAATAACTTAGTTA+TGG | 0.372844 | 8_3:-62938196 | Msa1301030:three_prime_UTR |
| TGCTTTCGAGGGATCAGAAT+GGG | 0.373644 | 8_3:-62938354 | Msa1301030:three_prime_UTR |
| TCCACCTATCCACTAGTTCC+TGG | 0.377216 | 8_3:-62939786 | Msa1301030:CDS |
| GTTGTTGGTCTTGGTGGACT+TGG | 0.377317 | 8_3:-62939313 | Msa1301030:CDS |
| GCCCAACCAAAGGCCACATT+TGG | 0.377376 | 8_3:+62940407 | None:intergenic |
| ACATTTGGATGCTCAAATTC+AGG | 0.378005 | 8_3:+62940422 | None:intergenic |
| ATTTGATGAAATAAATGTTT+TGG | 0.378457 | 8_3:-62938428 | Msa1301030:three_prime_UTR |
| CAAGAGTTTCAAGAGGAAAT+CGG | 0.380665 | 8_3:-62938309 | Msa1301030:three_prime_UTR |
| AAAGGAAGCAAGAGAACTCT+TGG | 0.393117 | 8_3:-62939218 | Msa1301030:CDS |
| GACTTCAGTAATCCAATTAG+AGG | 0.398578 | 8_3:+62939005 | None:intergenic |
| TCGAATGATTCGTCATTTGT+TGG | 0.399368 | 8_3:+62938064 | None:intergenic |
| TCCAAATGTGGCCTTTGGTT+GGG | 0.404435 | 8_3:-62940408 | Msa1301030:CDS |
| ATAGGTGTTGTTGGTCTTGG+TGG | 0.406919 | 8_3:-62939319 | Msa1301030:CDS |
| TTGTGTAGAATTTAAGAGCT+TGG | 0.407998 | 8_3:+62938470 | None:intergenic |
| CATATAGGTGTTGTTGGTCT+TGG | 0.413940 | 8_3:-62939322 | Msa1301030:CDS |
| CCCCTTTCAATTTCTCCAGA+AGG | 0.415467 | 8_3:-62940358 | Msa1301030:intron |
| AAGTTATTGAATTCAAGTTC+CGG | 0.423183 | 8_3:+62938204 | None:intergenic |
| GGTAGGCTTTACATTGTGTT+TGG | 0.423737 | 8_3:+62938595 | None:intergenic |
| TCCACATGATTAAGAATGAA+TGG | 0.429006 | 8_3:-62939815 | Msa1301030:CDS |
| AAAATTAAACTTGGGTTCTC+CGG | 0.430013 | 8_3:-62938223 | Msa1301030:three_prime_UTR |
| ATGCACAACCTCTGCTTTCG+AGG | 0.432734 | 8_3:-62938366 | Msa1301030:three_prime_UTR |
| GGTCTTGATAATTTGAAGTT+CGG | 0.435438 | 8_3:-62938287 | Msa1301030:three_prime_UTR |
| ACAAATGTGACATTTAATCT+TGG | 0.437101 | 8_3:+62938142 | None:intergenic |
| TCTTGGTGGACTTGGTCACA+TGG | 0.440795 | 8_3:-62939305 | Msa1301030:CDS |
| GAGCATCCAAATGTGGCCTT+TGG | 0.445115 | 8_3:-62940413 | Msa1301030:CDS |
| CCACATGATTAAGAATGAAT+GGG | 0.451390 | 8_3:-62939814 | Msa1301030:CDS |
| GGGAGCTCGAGAGGCTTCGC+TGG | 0.455382 | 8_3:+62938954 | None:intergenic |
| TATCGATTTGTGATTGACAT+TGG | 0.459329 | 8_3:-62938506 | Msa1301030:CDS |
| GGTATGCATATAGGTGTTGT+TGG | 0.468283 | 8_3:-62939328 | Msa1301030:CDS |
| AAGTAATATTGGAGGGATGA+AGG | 0.472105 | 8_3:-62938645 | Msa1301030:CDS |
| ATCCAAATGTGGCCTTTGGT+TGG | 0.472346 | 8_3:-62940409 | Msa1301030:CDS |
| GGTTGTAGACGAGCACTTTG+TGG | 0.479305 | 8_3:-62939452 | Msa1301030:CDS |
| AAGAGTTTCAAGAGGAAATC+GGG | 0.481161 | 8_3:-62938308 | Msa1301030:three_prime_UTR |
| GCTTCAAGTGGTAAACCATC+AGG | 0.481602 | 8_3:+62939421 | None:intergenic |
| ACCTTCTGGAGAAATTGAAA+GGG | 0.484740 | 8_3:+62940357 | None:intergenic |
| GCAGGGAGAAAGATAGTAGC+TGG | 0.485268 | 8_3:-62938668 | Msa1301030:intron |
| TACATCACCTAACAAAGAAA+AGG | 0.487305 | 8_3:-62939236 | Msa1301030:CDS |
| AAATACAGACATGAGATTGT+TGG | 0.489466 | 8_3:-62939673 | Msa1301030:intron |
| TACCATTGAAGTCATCCCTA+TGG | 0.491456 | 8_3:-62938576 | Msa1301030:CDS |
| AACCTTCTGGAGAAATTGAA+AGG | 0.496825 | 8_3:+62940356 | None:intergenic |
| GCTGCTCCTCTTCTTTGTGC+CGG | 0.498942 | 8_3:-62939397 | Msa1301030:CDS |
| TTTGTGGTTCGCATTCCTGA+TGG | 0.505708 | 8_3:-62939436 | Msa1301030:CDS |
| CCCGAAAGTAAAGTAAAGAC+GGG | 0.510473 | 8_3:+62938933 | None:intergenic |
| GACAAGCCTGGTATGCATAT+AGG | 0.511811 | 8_3:-62939337 | Msa1301030:CDS |
| TGCACAACCTCTGCTTTCGA+GGG | 0.524378 | 8_3:-62938365 | Msa1301030:three_prime_UTR |
| CGCTTTACAGCCACGTGCGG+TGG | 0.529005 | 8_3:-62939523 | Msa1301030:CDS |
| AGGGCTATACACTGTGATAC+CGG | 0.532428 | 8_3:+62939378 | None:intergenic |
| GTTTAAAGTTGGAGACAAAG+TGG | 0.533040 | 8_3:-62939617 | Msa1301030:CDS |
| CGTGATGACACCACCACATA+CGG | 0.535685 | 8_3:-62939493 | Msa1301030:CDS |
| GTTGGAGACAAAGTGGGTGT+TGG | 0.538424 | 8_3:-62939610 | Msa1301030:CDS |
| CTGCTTTCGAGGGATCAGAA+TGG | 0.539953 | 8_3:-62938355 | Msa1301030:three_prime_UTR |
| TTTAAAGTTGGAGACAAAGT+GGG | 0.540239 | 8_3:-62939616 | Msa1301030:CDS |
| GTCTCTTGCTGCCCAACCAA+AGG | 0.541338 | 8_3:+62940397 | None:intergenic |
| ATCCATAGGGATGACTTCAA+TGG | 0.541653 | 8_3:+62938574 | None:intergenic |
| GGACTCTAGTAATCGAAGTT+CGG | 0.542180 | 8_3:+62937980 | None:intergenic |
| ATTGGATTACTGAAGTCTCA+TGG | 0.542612 | 8_3:-62938999 | Msa1301030:CDS |
| TGTTGGTATAGTGACAAAAG+TGG | 0.544306 | 8_3:-62939656 | Msa1301030:CDS |
| GCAGTGTTCACATAATCCAT+AGG | 0.547554 | 8_3:+62938560 | None:intergenic |
| AAGGAAGCAAGAGAACTCTT+GGG | 0.547722 | 8_3:-62939217 | Msa1301030:CDS |
| CAGTGTTCACATAATCCATA+GGG | 0.548716 | 8_3:+62938561 | None:intergenic |
| CCACCTATCCACTAGTTCCT+GGG | 0.558391 | 8_3:-62939785 | Msa1301030:intron |
| CCCAGGAACTAGTGGATAGG+TGG | 0.565658 | 8_3:+62939785 | None:intergenic |
| CGGAGGTTACTCTGACTCAA+TGG | 0.566334 | 8_3:-62939473 | Msa1301030:CDS |
| ACCCGAAAGTAAAGTAAAGA+CGG | 0.569687 | 8_3:+62938932 | None:intergenic |
| CCCATTCATTCTTAATCATG+TGG | 0.570774 | 8_3:+62939814 | None:intergenic |
| TGGGCAGCAAGAGACCAATC+TGG | 0.572795 | 8_3:-62940389 | Msa1301030:CDS |
| GTTGGTATAGTGACAAAAGT+GGG | 0.575434 | 8_3:-62939655 | Msa1301030:CDS |
| ACGATATTTGCCACCGCACG+TGG | 0.576286 | 8_3:+62939513 | None:intergenic |
| GTAAAGACGGGGAGCTCGAG+AGG | 0.576499 | 8_3:+62938945 | None:intergenic |
| CGTTATACAAGAGTTTCAAG+AGG | 0.583925 | 8_3:-62938316 | Msa1301030:three_prime_UTR |
| CTATATCACACACACATATG+TGG | 0.584169 | 8_3:+62940532 | None:intergenic |
| GTCTCATGGAAAACTTGTAA+TGG | 0.588488 | 8_3:-62938985 | Msa1301030:CDS |
| TTTGTGTGCGATAGTTGTGT+TGG | 0.589082 | 8_3:-62938124 | Msa1301030:three_prime_UTR |
| TATGTGGTGTGGAAGCTACA+TGG | 0.591813 | 8_3:+62940548 | None:intergenic |
| GTAGCTGGAAGTAATATTGG+AGG | 0.593394 | 8_3:-62938653 | Msa1301030:CDS |
| AAGGGGAGAGAAGACCAGAT+TGG | 0.593974 | 8_3:+62940375 | None:intergenic |
| AAAGCATACCCAGGAACTAG+TGG | 0.598271 | 8_3:+62939777 | None:intergenic |
| AATCCAATTAGAGGTGAGAG+AGG | 0.598290 | 8_3:+62939014 | None:intergenic |
| ATAGGGATGACTTCAATGGT+AGG | 0.600678 | 8_3:+62938578 | None:intergenic |
| GTCAGAGTAACCTCCGTATG+TGG | 0.602930 | 8_3:+62939480 | None:intergenic |
| ACAACACCTATATGCATACC+AGG | 0.605327 | 8_3:+62939331 | None:intergenic |
| CATGGAAAACTTGTAATGGT+TGG | 0.608863 | 8_3:-62938981 | Msa1301030:CDS |
| GCTTCAATGGATACATTAGA+CGG | 0.612870 | 8_3:-62939065 | Msa1301030:CDS |
| GGATTATGTGAACACTGCAA+TGG | 0.614440 | 8_3:-62938555 | Msa1301030:CDS |
| CGAGTCCAAAATATCGAAGA+GGG | 0.615637 | 8_3:+62939359 | None:intergenic |
| TAGCTGGAAGTAATATTGGA+GGG | 0.622888 | 8_3:-62938652 | Msa1301030:CDS |
| GTGATACCGGCACAAAGAAG+AGG | 0.629010 | 8_3:+62939391 | None:intergenic |
| ATACCCAGGAACTAGTGGAT+AGG | 0.629537 | 8_3:+62939782 | None:intergenic |
| TGAATTTGAGCATCCAAATG+TGG | 0.630535 | 8_3:-62940420 | Msa1301030:CDS |
| TTCTGATCCCTCGAAAGCAG+AGG | 0.636348 | 8_3:+62938358 | None:intergenic |
| TCACACACACATATGTGGTG+TGG | 0.639998 | 8_3:+62940537 | None:intergenic |
| TATCATTGACACAGTTTCAG+CGG | 0.641419 | 8_3:-62939042 | Msa1301030:CDS |
| CACATGATTAAGAATGAATG+GGG | 0.641925 | 8_3:-62939813 | Msa1301030:CDS |
| AGAGGAGCAGCAGCTTCAAG+TGG | 0.642094 | 8_3:+62939409 | None:intergenic |
| CCTCGCTTTACAGCCACGTG+CGG | 0.648002 | 8_3:-62939526 | Msa1301030:CDS |
| CCTTCTGGAGAAATTGAAAG+GGG | 0.653235 | 8_3:+62940358 | None:intergenic |
| GCTCACTACACTACAACACA+TGG | 0.655303 | 8_3:-62940587 | Msa1301030:five_prime_UTR |
| CCGCACGTGGCTGTAAAGCG+AGG | 0.655632 | 8_3:+62939526 | None:intergenic |
| AGAGTAACCTCCGTATGTGG+TGG | 0.659164 | 8_3:+62939483 | None:intergenic |
| ATGTGGTGTGGAAGCTACAT+GGG | 0.666784 | 8_3:+62940549 | None:intergenic |
| TCGAGTCCAAAATATCGAAG+AGG | 0.670879 | 8_3:+62939358 | None:intergenic |
| CCGAAAGTAAAGTAAAGACG+GGG | 0.692920 | 8_3:+62938934 | None:intergenic |
| GATGACACCACCACATACGG+AGG | 0.719955 | 8_3:-62939490 | Msa1301030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTATTATTATTATTTT+AGG | - | chr8_3:62938337-62938356 | Msa1301030:three_prime_UTR | 0.0% |
| !!! | AAGAACATATATTTTATTTA+TGG | - | chr8_3:62940557-62940576 | Msa1301030:five_prime_UTR | 10.0% |
| !! | AAATAAATATAGAAATGAAG+AGG | + | chr8_3:62938278-62938297 | None:intergenic | 15.0% |
| !! | CAAAAAATGTATTTATTAAG+TGG | + | chr8_3:62938363-62938382 | None:intergenic | 15.0% |
| !!! | TATTTAATCTTTTCCTTTTT+TGG | + | chr8_3:62938407-62938426 | None:intergenic | 15.0% |
| !! | TTAGAATCAAAATAAAGTAA+TGG | + | chr8_3:62938895-62938914 | None:intergenic | 15.0% |
| !! | ACATTCTAATATTCTTAAAT+TGG | - | chr8_3:62939466-62939485 | Msa1301030:CDS | 15.0% |
| !! | TAATATTCTTAAATTGGAAA+TGG | - | chr8_3:62939472-62939491 | Msa1301030:CDS | 15.0% |
| !!! | AGCTATGTTAATAATTTTAT+AGG | - | chr8_3:62939511-62939530 | Msa1301030:CDS | 15.0% |
| !! | TTTCTTATATATACAATTGA+AGG | - | chr8_3:62939770-62939789 | Msa1301030:intron | 15.0% |
| !!! | ATTTGATGAAATAAATGTTT+TGG | - | chr8_3:62940170-62940189 | Msa1301030:intron | 15.0% |
| !!! | TCATTCAAAATATTGTTTTG+TGG | - | chr8_3:62938743-62938762 | Msa1301030:intron | 20.0% |
| !!! | AAAGTAGAAAAGTTTAAAGT+TGG | - | chr8_3:62938970-62938989 | Msa1301030:CDS | 20.0% |
| !!! | AATAATTTTATAGGCTTCAA+TGG | - | chr8_3:62939520-62939539 | Msa1301030:CDS | 20.0% |
| !! | TGAATTCAATAACTTAGTTA+TGG | - | chr8_3:62940402-62940421 | Msa1301030:CDS | 20.0% |
| !! | TGTTCTTGTATTGAAGTATT+TGG | + | chr8_3:62937986-62938005 | None:intergenic | 25.0% |
| !!! | ATTTTAATTAAAGCATACCC+AGG | + | chr8_3:62938833-62938852 | None:intergenic | 25.0% |
| !!! | CAAGACAATTTCTAAGATAA+TGG | + | chr8_3:62938865-62938884 | None:intergenic | 25.0% |
| ! | CATTATCTTAGAAATTGTCT+TGG | - | chr8_3:62938863-62938882 | Msa1301030:intron | 25.0% |
| ! | TTTATACTTGCATCTTATCT+TGG | + | chr8_3:62939434-62939453 | None:intergenic | 25.0% |
| ! | TTTCACCCAAAAATTAAACT+TGG | - | chr8_3:62940366-62940385 | Msa1301030:CDS | 25.0% |
| ! | TTCACCCAAAAATTAAACTT+GGG | - | chr8_3:62940367-62940386 | Msa1301030:CDS | 25.0% |
| !!! | AGAACCCAAGTTTAATTTTT+GGG | + | chr8_3:62940374-62940393 | None:intergenic | 25.0% |
| !! | AAGTTATTGAATTCAAGTTC+CGG | + | chr8_3:62940397-62940416 | None:intergenic | 25.0% |
| ! | ACAAATGTGACATTTAATCT+TGG | + | chr8_3:62940459-62940478 | None:intergenic | 25.0% |
| ! | ATTTTTCGTCACAGTTGAAA+TGG | - | chr8_3:62938145-62938164 | Msa1301030:three_prime_UTR | 30.0% |
| ! | TTTTTCGTCACAGTTGAAAT+GGG | - | chr8_3:62938146-62938165 | Msa1301030:three_prime_UTR | 30.0% |
| !!! | TAATCTTTTCCTTTTTTGGC+TGG | + | chr8_3:62938403-62938422 | None:intergenic | 30.0% |
| AACGCAAGAACATTAAAATG+AGG | + | chr8_3:62938592-62938611 | None:intergenic | 30.0% | |
| TTAATGTTCTTGCGTTAGAT+CGG | - | chr8_3:62938596-62938615 | Msa1301030:CDS | 30.0% | |
| TCCACATGATTAAGAATGAA+TGG | - | chr8_3:62938783-62938802 | Msa1301030:intron | 30.0% | |
| CCACATGATTAAGAATGAAT+GGG | - | chr8_3:62938784-62938803 | Msa1301030:intron | 30.0% | |
| CACATGATTAAGAATGAATG+GGG | - | chr8_3:62938785-62938804 | Msa1301030:intron | 30.0% | |
| AAATACAGACATGAGATTGT+TGG | - | chr8_3:62938925-62938944 | Msa1301030:intron | 30.0% | |
| ! | TTTAAAGTTGGAGACAAAGT+GGG | - | chr8_3:62938982-62939001 | Msa1301030:CDS | 30.0% |
| !!! | GTTAAGTTTGCTAAAGCTTT+TGG | - | chr8_3:62939318-62939337 | Msa1301030:CDS | 30.0% |
| TACATCACCTAACAAAGAAA+AGG | - | chr8_3:62939362-62939381 | Msa1301030:CDS | 30.0% | |
| ! | TAGCTAGCATATATTTTCTC+TGG | - | chr8_3:62939693-62939712 | Msa1301030:intron | 30.0% |
| CAAATCAAACAAGAGATCTA+TGG | + | chr8_3:62939815-62939834 | None:intergenic | 30.0% | |
| ATAGTAGCTGGAAGTAATAT+TGG | - | chr8_3:62939942-62939961 | Msa1301030:intron | 30.0% | |
| !! | TATCGATTTGTGATTGACAT+TGG | - | chr8_3:62940092-62940111 | Msa1301030:intron | 30.0% |
| TTGTGTAGAATTTAAGAGCT+TGG | + | chr8_3:62940131-62940150 | None:intergenic | 30.0% | |
| TATGTTGCTGAACTCTAATA+TGG | - | chr8_3:62940204-62940223 | Msa1301030:intron | 30.0% | |
| ! | GGTCTTGATAATTTGAAGTT+CGG | - | chr8_3:62940311-62940330 | Msa1301030:intron | 30.0% |
| !! | GAGAACCCAAGTTTAATTTT+TGG | + | chr8_3:62940375-62940394 | None:intergenic | 30.0% |
| AAAATTAAACTTGGGTTCTC+CGG | - | chr8_3:62940375-62940394 | Msa1301030:CDS | 30.0% | |
| CTATATCACACACACATATG+TGG | + | chr8_3:62938069-62938088 | None:intergenic | 35.0% | |
| ACATTTGGATGCTCAAATTC+AGG | + | chr8_3:62938179-62938198 | None:intergenic | 35.0% | |
| TGAATTTGAGCATCCAAATG+TGG | - | chr8_3:62938178-62938197 | Msa1301030:three_prime_UTR | 35.0% | |
| ! | ACCTTCTGGAGAAATTGAAA+GGG | + | chr8_3:62938244-62938263 | None:intergenic | 35.0% |
| ! | AACCTTCTGGAGAAATTGAA+AGG | + | chr8_3:62938245-62938264 | None:intergenic | 35.0% |
| ATTTGTGTCTCCAAACTTTC+AGG | - | chr8_3:62938699-62938718 | Msa1301030:intron | 35.0% | |
| TTTGTGTCTCCAAACTTTCA+GGG | - | chr8_3:62938700-62938719 | Msa1301030:intron | 35.0% | |
| CATTTGTTTCCCTGAAAGTT+TGG | + | chr8_3:62938712-62938731 | None:intergenic | 35.0% | |
| CCCATTCATTCTTAATCATG+TGG | + | chr8_3:62938787-62938806 | None:intergenic | 35.0% | |
| TGTTGGTATAGTGACAAAAG+TGG | - | chr8_3:62938942-62938961 | Msa1301030:CDS | 35.0% | |
| GTTGGTATAGTGACAAAAGT+GGG | - | chr8_3:62938943-62938962 | Msa1301030:CDS | 35.0% | |
| ! | GTTTAAAGTTGGAGACAAAG+TGG | - | chr8_3:62938981-62939000 | Msa1301030:CDS | 35.0% |
| ! | TATAGCCCTCTTCGATATTT+TGG | - | chr8_3:62939234-62939253 | Msa1301030:CDS | 35.0% |
| ! | CTTGCTTCCTTTTCTTTGTT+AGG | + | chr8_3:62939372-62939391 | None:intergenic | 35.0% |
| GCTTCAATGGATACATTAGA+CGG | - | chr8_3:62939533-62939552 | Msa1301030:CDS | 35.0% | |
| TATCATTGACACAGTTTCAG+CGG | - | chr8_3:62939556-62939575 | Msa1301030:CDS | 35.0% | |
| GACTTCAGTAATCCAATTAG+AGG | + | chr8_3:62939596-62939615 | None:intergenic | 35.0% | |
| ATTGGATTACTGAAGTCTCA+TGG | - | chr8_3:62939599-62939618 | Msa1301030:CDS | 35.0% | |
| GTCTCATGGAAAACTTGTAA+TGG | - | chr8_3:62939613-62939632 | Msa1301030:CDS | 35.0% | |
| CATGGAAAACTTGTAATGGT+TGG | - | chr8_3:62939617-62939636 | Msa1301030:CDS | 35.0% | |
| ACCCGAAAGTAAAGTAAAGA+CGG | + | chr8_3:62939669-62939688 | None:intergenic | 35.0% | |
| ! | TGATGATGCTAGCATATTCA+TGG | - | chr8_3:62939908-62939927 | Msa1301030:intron | 35.0% |
| TAGCTGGAAGTAATATTGGA+GGG | - | chr8_3:62939946-62939965 | Msa1301030:intron | 35.0% | |
| AAGTAATATTGGAGGGATGA+AGG | - | chr8_3:62939953-62939972 | Msa1301030:intron | 35.0% | |
| CAGTGTTCACATAATCCATA+GGG | + | chr8_3:62940040-62940059 | None:intergenic | 35.0% | |
| CGTTATACAAGAGTTTCAAG+AGG | - | chr8_3:62940282-62940301 | Msa1301030:intron | 35.0% | |
| CAAGAGTTTCAAGAGGAAAT+CGG | - | chr8_3:62940289-62940308 | Msa1301030:intron | 35.0% | |
| AAGAGTTTCAAGAGGAAATC+GGG | - | chr8_3:62940290-62940309 | Msa1301030:intron | 35.0% | |
| TCGAATGATTCGTCATTTGT+TGG | + | chr8_3:62940537-62940556 | None:intergenic | 35.0% | |
| ! | CCTTCTGGAGAAATTGAAAG+GGG | + | chr8_3:62938243-62938262 | None:intergenic | 40.0% |
| AGGTGAATGAATGAACCTTC+TGG | + | chr8_3:62938258-62938277 | None:intergenic | 40.0% | |
| TTTAAGCCTCCAGCCAAAAA+AGG | - | chr8_3:62938391-62938410 | Msa1301030:three_prime_UTR | 40.0% | |
| !!! | TCTTTTCCTTTTTTGGCTGG+AGG | + | chr8_3:62938400-62938419 | None:intergenic | 40.0% |
| CGAGTCCAAAATATCGAAGA+GGG | + | chr8_3:62939242-62939261 | None:intergenic | 40.0% | |
| TCGAGTCCAAAATATCGAAG+AGG | + | chr8_3:62939243-62939262 | None:intergenic | 40.0% | |
| ACAACACCTATATGCATACC+AGG | + | chr8_3:62939270-62939289 | None:intergenic | 40.0% | |
| ! | GGTATGCATATAGGTGTTGT+TGG | - | chr8_3:62939270-62939289 | Msa1301030:CDS | 40.0% |
| !! | CATATAGGTGTTGTTGGTCT+TGG | - | chr8_3:62939276-62939295 | Msa1301030:CDS | 40.0% |
| AAAGGAAGCAAGAGAACTCT+TGG | - | chr8_3:62939380-62939399 | Msa1301030:CDS | 40.0% | |
| AAGGAAGCAAGAGAACTCTT+GGG | - | chr8_3:62939381-62939400 | Msa1301030:CDS | 40.0% | |
| AATCCAATTAGAGGTGAGAG+AGG | + | chr8_3:62939587-62939606 | None:intergenic | 40.0% | |
| CCGAAAGTAAAGTAAAGACG+GGG | + | chr8_3:62939667-62939686 | None:intergenic | 40.0% | |
| CCCCGTCTTTACTTTACTTT+CGG | - | chr8_3:62939664-62939683 | Msa1301030:CDS | 40.0% | |
| CCCGAAAGTAAAGTAAAGAC+GGG | + | chr8_3:62939668-62939687 | None:intergenic | 40.0% | |
| CCCGTCTTTACTTTACTTTC+GGG | - | chr8_3:62939665-62939684 | Msa1301030:CDS | 40.0% | |
| ATGCTAGCATATTCATGGCA+GGG | - | chr8_3:62939913-62939932 | Msa1301030:intron | 40.0% | |
| GTAGCTGGAAGTAATATTGG+AGG | - | chr8_3:62939945-62939964 | Msa1301030:intron | 40.0% | |
| GGTAGGCTTTACATTGTGTT+TGG | + | chr8_3:62940006-62940025 | None:intergenic | 40.0% | |
| ATAGGGATGACTTCAATGGT+AGG | + | chr8_3:62940023-62940042 | None:intergenic | 40.0% | |
| TACCATTGAAGTCATCCCTA+TGG | - | chr8_3:62940022-62940041 | Msa1301030:intron | 40.0% | |
| ATCCATAGGGATGACTTCAA+TGG | + | chr8_3:62940027-62940046 | None:intergenic | 40.0% | |
| GCAGTGTTCACATAATCCAT+AGG | + | chr8_3:62940041-62940060 | None:intergenic | 40.0% | |
| GGATTATGTGAACACTGCAA+TGG | - | chr8_3:62940043-62940062 | Msa1301030:intron | 40.0% | |
| TTTGTGTGCGATAGTTGTGT+TGG | - | chr8_3:62940474-62940493 | Msa1301030:five_prime_UTR | 40.0% | |
| GGACTCTAGTAATCGAAGTT+CGG | + | chr8_3:62940621-62940640 | None:intergenic | 40.0% | |
| GCTCACTACACTACAACACA+TGG | - | chr8_3:62938011-62938030 | Msa1301030:three_prime_UTR | 45.0% | |
| ATGTGGTGTGGAAGCTACAT+GGG | + | chr8_3:62938052-62938071 | None:intergenic | 45.0% | |
| TATGTGGTGTGGAAGCTACA+TGG | + | chr8_3:62938053-62938072 | None:intergenic | 45.0% | |
| TCACACACACATATGTGGTG+TGG | + | chr8_3:62938064-62938083 | None:intergenic | 45.0% | |
| ATCCAAATGTGGCCTTTGGT+TGG | - | chr8_3:62938189-62938208 | Msa1301030:three_prime_UTR | 45.0% | |
| TCCAAATGTGGCCTTTGGTT+GGG | - | chr8_3:62938190-62938209 | Msa1301030:three_prime_UTR | 45.0% | |
| CCCCTTTCAATTTCTCCAGA+AGG | - | chr8_3:62938240-62938259 | Msa1301030:three_prime_UTR | 45.0% | |
| ACCCACAATCCAGTTCAACA+GGG | + | chr8_3:62938622-62938641 | None:intergenic | 45.0% | |
| TACCCACAATCCAGTTCAAC+AGG | + | chr8_3:62938623-62938642 | None:intergenic | 45.0% | |
| ! | ATACCCAGGAACTAGTGGAT+AGG | + | chr8_3:62938819-62938838 | None:intergenic | 45.0% |
| AAAGCATACCCAGGAACTAG+TGG | + | chr8_3:62938824-62938843 | None:intergenic | 45.0% | |
| TTTGTGGTTCGCATTCCTGA+TGG | - | chr8_3:62939162-62939181 | Msa1301030:intron | 45.0% | |
| GCTTCAAGTGGTAAACCATC+AGG | + | chr8_3:62939180-62939199 | None:intergenic | 45.0% | |
| AGGGCTATACACTGTGATAC+CGG | + | chr8_3:62939223-62939242 | None:intergenic | 45.0% | |
| !! | TATTTTGGACTCGACAAGCC+TGG | - | chr8_3:62939249-62939268 | Msa1301030:CDS | 45.0% |
| GACAAGCCTGGTATGCATAT+AGG | - | chr8_3:62939261-62939280 | Msa1301030:CDS | 45.0% | |
| !! | ATAGGTGTTGTTGGTCTTGG+TGG | - | chr8_3:62939279-62939298 | Msa1301030:CDS | 45.0% |
| CATCCTCTCTCACCTCTAAT+TGG | - | chr8_3:62939581-62939600 | Msa1301030:CDS | 45.0% | |
| GATGCTAGCATATTCATGGC+AGG | - | chr8_3:62939912-62939931 | Msa1301030:intron | 45.0% | |
| TGCTTTCGAGGGATCAGAAT+GGG | - | chr8_3:62940244-62940263 | Msa1301030:intron | 45.0% | |
| GAGCATCCAAATGTGGCCTT+TGG | - | chr8_3:62938185-62938204 | Msa1301030:three_prime_UTR | 50.0% | |
| AAGGGGAGAGAAGACCAGAT+TGG | + | chr8_3:62938226-62938245 | None:intergenic | 50.0% | |
| TTAGATCGGCCCTGTTGAAC+TGG | - | chr8_3:62938610-62938629 | Msa1301030:CDS | 50.0% | |
| GCCCTGTTGAACTGGATTGT+GGG | - | chr8_3:62938618-62938637 | Msa1301030:CDS | 50.0% | |
| TCCACCTATCCACTAGTTCC+TGG | - | chr8_3:62938812-62938831 | Msa1301030:intron | 50.0% | |
| CCACCTATCCACTAGTTCCT+GGG | - | chr8_3:62938813-62938832 | Msa1301030:intron | 50.0% | |
| GTTGGAGACAAAGTGGGTGT+TGG | - | chr8_3:62938988-62939007 | Msa1301030:CDS | 50.0% | |
| CGTGATGACACCACCACATA+CGG | - | chr8_3:62939105-62939124 | Msa1301030:intron | 50.0% | |
| AGAGTAACCTCCGTATGTGG+TGG | + | chr8_3:62939118-62939137 | None:intergenic | 50.0% | |
| GTCAGAGTAACCTCCGTATG+TGG | + | chr8_3:62939121-62939140 | None:intergenic | 50.0% | |
| CGGAGGTTACTCTGACTCAA+TGG | - | chr8_3:62939125-62939144 | Msa1301030:intron | 50.0% | |
| GGTTGTAGACGAGCACTTTG+TGG | - | chr8_3:62939146-62939165 | Msa1301030:intron | 50.0% | |
| GTGATACCGGCACAAAGAAG+AGG | + | chr8_3:62939210-62939229 | None:intergenic | 50.0% | |
| !! | GTTGTTGGTCTTGGTGGACT+TGG | - | chr8_3:62939285-62939304 | Msa1301030:CDS | 50.0% |
| !! | TCTTGGTGGACTTGGTCACA+TGG | - | chr8_3:62939293-62939312 | Msa1301030:CDS | 50.0% |
| GCAGGGAGAAAGATAGTAGC+TGG | - | chr8_3:62939930-62939949 | Msa1301030:intron | 50.0% | |
| ATGCACAACCTCTGCTTTCG+AGG | - | chr8_3:62940232-62940251 | Msa1301030:intron | 50.0% | |
| TGCACAACCTCTGCTTTCGA+GGG | - | chr8_3:62940233-62940252 | Msa1301030:intron | 50.0% | |
| TTCTGATCCCTCGAAAGCAG+AGG | + | chr8_3:62940243-62940262 | None:intergenic | 50.0% | |
| CTGCTTTCGAGGGATCAGAA+TGG | - | chr8_3:62940243-62940262 | Msa1301030:intron | 50.0% | |
| GCCCAACCAAAGGCCACATT+TGG | + | chr8_3:62938194-62938213 | None:intergenic | 55.0% | |
| GTCTCTTGCTGCCCAACCAA+AGG | + | chr8_3:62938204-62938223 | None:intergenic | 55.0% | |
| TGGGCAGCAAGAGACCAATC+TGG | - | chr8_3:62938209-62938228 | Msa1301030:three_prime_UTR | 55.0% | |
| GGCCCTGTTGAACTGGATTG+TGG | - | chr8_3:62938617-62938636 | Msa1301030:CDS | 55.0% | |
| ! | CCCAGGAACTAGTGGATAGG+TGG | + | chr8_3:62938816-62938835 | None:intergenic | 55.0% |
| ACGATATTTGCCACCGCACG+TGG | + | chr8_3:62939088-62939107 | None:intergenic | 55.0% | |
| GATGACACCACCACATACGG+AGG | - | chr8_3:62939108-62939127 | Msa1301030:intron | 55.0% | |
| AGAGGAGCAGCAGCTTCAAG+TGG | + | chr8_3:62939192-62939211 | None:intergenic | 55.0% | |
| GCTGCTCCTCTTCTTTGTGC+CGG | - | chr8_3:62939201-62939220 | Msa1301030:CDS | 55.0% | |
| CCTCGCTTTACAGCCACGTG+CGG | - | chr8_3:62939072-62939091 | Msa1301030:intron | 60.0% | |
| GTAAAGACGGGGAGCTCGAG+AGG | + | chr8_3:62939656-62939675 | None:intergenic | 60.0% | |
| CCGCACGTGGCTGTAAAGCG+AGG | + | chr8_3:62939075-62939094 | None:intergenic | 65.0% | |
| CGCTTTACAGCCACGTGCGG+TGG | - | chr8_3:62939075-62939094 | Msa1301030:intron | 65.0% | |
| GGGAGCTCGAGAGGCTTCGC+TGG | + | chr8_3:62939647-62939666 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 62937976 | 62940644 | 62937976 | ID=Msa1301030;Name=Msa1301030 |
| chr8_3 | mRNA | 62937976 | 62940644 | 62937976 | ID=Msa1301030-mRNA-1;Parent=Msa1301030;Name=Msa1301030-mRNA-1;_AED=0.05;_eAED=0.05;_QI=188|1|1|1|1|1|5|505|361 |
| chr8_3 | exon | 62937976 | 62938686 | 62937976 | ID=Msa1301030-mRNA-1:exon:18754;Parent=Msa1301030-mRNA-1 |
| chr8_3 | exon | 62938934 | 62939087 | 62938934 | ID=Msa1301030-mRNA-1:exon:18753;Parent=Msa1301030-mRNA-1 |
| chr8_3 | exon | 62939174 | 62939687 | 62939174 | ID=Msa1301030-mRNA-1:exon:18752;Parent=Msa1301030-mRNA-1 |
| chr8_3 | exon | 62939786 | 62939899 | 62939786 | ID=Msa1301030-mRNA-1:exon:18751;Parent=Msa1301030-mRNA-1 |
| chr8_3 | exon | 62940359 | 62940644 | 62940359 | ID=Msa1301030-mRNA-1:exon:18750;Parent=Msa1301030-mRNA-1 |
| chr8_3 | five_prime_UTR | 62940457 | 62940644 | 62940457 | ID=Msa1301030-mRNA-1:five_prime_utr;Parent=Msa1301030-mRNA-1 |
| chr8_3 | CDS | 62940359 | 62940456 | 62940359 | ID=Msa1301030-mRNA-1:cds;Parent=Msa1301030-mRNA-1 |
| chr8_3 | CDS | 62939786 | 62939899 | 62939786 | ID=Msa1301030-mRNA-1:cds;Parent=Msa1301030-mRNA-1 |
| chr8_3 | CDS | 62939174 | 62939687 | 62939174 | ID=Msa1301030-mRNA-1:cds;Parent=Msa1301030-mRNA-1 |
| chr8_3 | CDS | 62938934 | 62939087 | 62938934 | ID=Msa1301030-mRNA-1:cds;Parent=Msa1301030-mRNA-1 |
| chr8_3 | CDS | 62938481 | 62938686 | 62938481 | ID=Msa1301030-mRNA-1:cds;Parent=Msa1301030-mRNA-1 |
| chr8_3 | three_prime_UTR | 62937976 | 62938480 | 62937976 | ID=Msa1301030-mRNA-1:three_prime_utr;Parent=Msa1301030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
