AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0046680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046680 MtrunA17_Chr3g0121001 99.365 315 2 0 1 315 1 315 0.0 640
Msa0046680 MtrunA17_Chr5g0447941 68.831 308 95 1 7 314 6 312 2.02e-155 437
Msa0046680 MtrunA17_Chr5g0447951 68.506 308 96 1 7 314 6 312 4.96e-155 436
Msa0046680 MtrunA17_Chr5g0447961 68.506 308 96 1 7 314 6 312 4.96e-155 436
Msa0046680 MtrunA17_Chr1g0173621 63.175 315 113 3 3 315 2 315 3.21e-144 409
Msa0046680 MtrunA17_Chr6g0479981 51.656 302 134 5 6 302 5 299 1.95e-103 305
Msa0046680 MtrunA17_Chr6g0480011 49.074 324 146 7 3 313 2 319 1.09e-99 296
Msa0046680 MtrunA17_Chr6g0480021 48.000 325 127 8 4 313 3 300 3.68e-95 284
Msa0046680 MtrunA17_Chr4g0018921 40.328 305 168 7 21 315 14 314 4.15e-75 233
Msa0046680 MtrunA17_Chr8g0368921 41.053 285 164 3 20 302 15 297 4.60e-72 225
Msa0046680 MtrunA17_Chr4g0009531 45.583 283 148 5 20 302 15 291 1.08e-70 221
Msa0046680 MtrunA17_Chr7g0239701 41.639 305 163 5 20 315 19 317 5.65e-69 217
Msa0046680 MtrunA17_Chr8g0368931 40.984 305 166 5 20 315 15 314 5.82e-69 217
Msa0046680 MtrunA17_Chr4g0009581 41.447 304 155 5 20 315 16 304 6.03e-66 209
Msa0046680 MtrunA17_Chr4g0036261 53.846 182 74 3 141 313 1 181 1.23e-61 194
Msa0046680 MtrunA17_Chr7g0243551 38.909 275 159 5 21 294 23 289 1.26e-61 198
Msa0046680 MtrunA17_Chr4g0036051 37.500 304 174 6 20 312 10 308 7.58e-54 178
Msa0046680 MtrunA17_Chr4g0036301 52.353 170 71 3 153 313 1 169 1.92e-53 172
Msa0046680 MtrunA17_Chr4g0036321 52.353 170 71 3 153 313 1 169 4.18e-52 169
Msa0046680 MtrunA17_Chr4g0009621 41.250 240 121 3 84 315 1 228 1.96e-48 161
Msa0046680 MtrunA17_Chr4g0036291 50.476 105 46 3 7 109 6 106 1.15e-28 106
Msa0046680 MtrunA17_Chr4g0036251 49.515 103 44 2 7 109 6 100 3.06e-28 105
Msa0046680 MtrunA17_Chr6g0479811 48.673 113 53 2 193 302 1 111 9.56e-28 104
Msa0046680 MtrunA17_Chr4g0036311 47.222 108 51 3 4 109 3 106 1.70e-27 103
Msa0046680 MtrunA17_Chr6g0479791 48.235 85 33 3 239 313 18 101 1.53e-17 77.0
Msa0046680 MtrunA17_Chr7g0274071 25.850 294 161 9 44 302 54 325 9.54e-14 70.9
Msa0046680 MtrunA17_Chr3g0127491 23.103 290 169 10 45 297 79 351 1.69e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046680 AT1G59960.1 51.692 325 138 7 6 315 5 325 1.57e-114 334
Msa0046680 AT1G59950.1 52.997 317 137 5 10 315 4 319 3.26e-110 323
Msa0046680 AT5G01670.1 40.645 310 159 9 20 315 23 321 3.02e-73 229
Msa0046680 AT2G37790.1 42.434 304 162 6 20 315 15 313 3.62e-73 228
Msa0046680 AT2G37770.2 41.830 306 162 6 20 315 15 314 9.88e-73 227
Msa0046680 AT5G62420.1 39.869 306 169 7 21 315 14 315 4.07e-71 223
Msa0046680 AT2G37760.2 39.344 305 167 5 20 315 15 310 1.02e-67 214
Msa0046680 AT2G37760.1 39.344 305 167 5 20 315 15 310 1.02e-67 214
Msa0046680 AT2G37760.5 41.429 280 154 4 20 298 15 285 2.52e-67 213
Msa0046680 AT5G01670.2 37.389 337 159 10 20 315 23 348 2.85e-67 214
Msa0046680 AT2G37760.4 40.780 282 157 4 20 300 15 287 4.20e-67 212
Msa0046680 AT2G37760.3 40.780 282 157 4 20 300 15 287 4.20e-67 212
Msa0046680 AT3G53880.1 38.235 306 173 6 20 315 15 314 1.94e-63 203
Msa0046680 AT3G53880.2 38.489 278 165 4 20 296 15 287 1.68e-59 193
Msa0046680 AT2G21250.1 34.868 304 182 6 20 312 10 308 5.31e-59 192
Msa0046680 AT2G21260.1 35.764 288 169 6 20 296 10 292 2.58e-58 190
Msa0046680 AT2G37760.6 38.550 262 149 4 63 315 6 264 3.27e-55 181
Msa0046680 AT2G37760.7 38.550 262 149 4 63 315 6 264 3.27e-55 181
Msa0046680 AT2G37770.1 46.354 192 98 3 20 211 15 201 1.35e-49 167
Msa0046680 AT2G21250.2 37.118 229 128 6 20 237 10 233 1.78e-44 152
Msa0046680 AT2G21260.2 32.258 217 134 4 89 294 8 222 1.62e-36 131
Msa0046680 AT1G06690.1 26.102 295 165 7 39 297 88 365 3.24e-18 84.7
Msa0046680 AT5G53580.1 25.623 281 153 12 45 287 80 342 5.95e-13 69.3
Msa0046680 AT1G60680.1 24.573 293 167 12 45 302 49 322 6.98e-11 62.8
Msa0046680 AT1G60750.1 27.451 306 174 13 21 302 25 306 8.87e-11 62.4

Find 96 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTGTTACTTCTAAATTA+TGG 0.129563 1_1:+78994102 Msa0046680:CDS
AGCCTCTTCTTGATGATCTA+TGG 0.232119 1_1:+78995124 Msa0046680:CDS
CTTTGATGAGTCTCTCTTGA+TGG 0.239320 1_1:-78995092 None:intergenic
AATCAAAGATTTGCAAGTTT+TGG 0.245163 1_1:-78995029 None:intergenic
TCACCTGGTTTAGTAGTAAT+TGG 0.253992 1_1:-78994318 None:intergenic
CTTTGTTACTTCTAAATTAT+GGG 0.275213 1_1:+78994103 Msa0046680:CDS
ACTTTATCTCTCTATTGCTT+TGG 0.326877 1_1:-78995450 None:intergenic
ATGTCTATAACCTTGTTTGA+TGG 0.330198 1_1:-78993985 None:intergenic
TCAACCTAGCATAAACAAAA+TGG 0.340889 1_1:+78993833 Msa0046680:exon
ACAATCTCTGATACTTCAAT+AGG 0.347637 1_1:-78994351 None:intergenic
AAAACTTGCAAATCTTTGAT+TGG 0.362637 1_1:+78995031 Msa0046680:CDS
TTCATATTTAAGCCTTCATT+TGG 0.370251 1_1:-78995508 None:intergenic
AACCTTGTTTGATGGCTTCA+AGG 0.381003 1_1:-78993977 None:intergenic
CTCTATTGCTTTGGTTTCTG+TGG 0.386455 1_1:-78995441 None:intergenic
CCCTGCTAGCACCTTTCCTA+AGG 0.387480 1_1:-78994723 None:intergenic
CAATGATATACTCAAAGAAT+TGG 0.390203 1_1:+78994765 Msa0046680:CDS
ATGTTGTGAATGTGAAATAA+AGG 0.401805 1_1:-78993785 None:intergenic
GTAACCTTACTGGTTGCTTC+CGG 0.403522 1_1:-78993939 None:intergenic
TGATAAGAAGAATGTTGAAT+TGG 0.422568 1_1:-78993808 None:intergenic
TAGAGCCTTCTGCAAGGAAA+AGG 0.424089 1_1:+78994675 Msa0046680:CDS
TTTCCGTTGTCCGGTGGAGG+AGG 0.424568 1_1:-78993889 None:intergenic
TTGGCCAATGGATCAAAATA+AGG 0.425035 1_1:-78994299 None:intergenic
CTTAGAGATTTCTGCAGAGC+AGG 0.429110 1_1:-78994155 None:intergenic
CTGCTCTGCAGAAATCTCTA+AGG 0.431594 1_1:+78994156 Msa0046680:CDS
GTTGCTAGCTCCAATGGCTT+TGG 0.432705 1_1:-78994433 None:intergenic
CCCTTAGGAAAGGTGCTAGC+AGG 0.441076 1_1:+78994722 Msa0046680:CDS
GAGGAGGGGAGGACTACTTC+AGG 0.445285 1_1:-78993873 None:intergenic
CAATCTCTGATACTTCAATA+GGG 0.455333 1_1:-78994350 None:intergenic
GTTTCTCTTGTTGCCATCCA+AGG 0.461119 1_1:-78994651 None:intergenic
TTCCGTTGTCCGGTGGAGGA+GGG 0.463761 1_1:-78993888 None:intergenic
GACTCTTCAACTAGAATACT+TGG 0.468397 1_1:+78994275 Msa0046680:CDS
AAAATGCCGGTGATGGGCCT+CGG 0.468907 1_1:+78993909 Msa0046680:CDS
TTTGATGCAGCTGCTGCATA+TGG 0.474976 1_1:+78994008 Msa0046680:CDS
TCCGTTGTCCGGTGGAGGAG+GGG 0.476698 1_1:-78993887 None:intergenic
GCCTCTTCTTGATGATCTAT+GGG 0.483427 1_1:+78995125 Msa0046680:CDS
CCTGCTAGCACCTTTCCTAA+GGG 0.491638 1_1:-78994722 None:intergenic
TGAGAAGTTGCTAGCTCCAA+TGG 0.493072 1_1:-78994439 None:intergenic
ACAACGGAAAATGCCGGTGA+TGG 0.497720 1_1:+78993902 Msa0046680:CDS
CTTGGTCTCACCAAAGCCAT+TGG 0.503945 1_1:+78994423 Msa0046680:CDS
TCAATTACTTGATTCACTGC+AGG 0.507920 1_1:-78994504 None:intergenic
TTTGGCAGATTTGTCTTCGA+TGG 0.511955 1_1:+78994950 Msa0046680:intron
GAAAGGTGTGTGGACATCAT+TGG 0.513831 1_1:+78994386 Msa0046680:CDS
ATTGCAGAAGCACTTAAACT+TGG 0.516828 1_1:+78994056 Msa0046680:CDS
CAACGGAAAATGCCGGTGAT+GGG 0.522929 1_1:+78993903 Msa0046680:CDS
TAACTGCCTTCTCACCCCTT+AGG 0.527768 1_1:+78994707 Msa0046680:CDS
CCTTAGGAAAGGTGCTAGCA+GGG 0.529822 1_1:+78994723 Msa0046680:CDS
TGGGATGAAGAATGAACAAT+CGG 0.530660 1_1:+78995144 Msa0046680:exon
ATAGGGTATTTAACTTCACC+TGG 0.535676 1_1:-78994333 None:intergenic
TTGCTTCCGGTGCGGTGCCG+AGG 0.538965 1_1:-78993926 None:intergenic
GTAGTCCTCCCCTCCTCCAC+CGG 0.540364 1_1:+78993879 Msa0046680:CDS
TTGATTCACTGCAGGAGGGA+TGG 0.540989 1_1:-78994496 None:intergenic
ACCTTTCCTAAGGGGTGAGA+AGG 0.541355 1_1:-78994713 None:intergenic
AATCGGTTCAATTTGAAACA+TGG 0.542218 1_1:+78995161 Msa0046680:three_prime_UTR
AGAGCCTTCTGCAAGGAAAA+GGG 0.543832 1_1:+78994676 Msa0046680:CDS
GTTGTCCGGTGGAGGAGGGG+AGG 0.547684 1_1:-78993884 None:intergenic
AGGTGGAAGTCAACCTTGGA+TGG 0.547815 1_1:+78994638 Msa0046680:intron
AGAAAGTTGTCACCAAATGA+AGG 0.548195 1_1:+78995496 Msa0046680:three_prime_UTR
TGTTGTGAATGTGAAATAAA+GGG 0.548900 1_1:-78993784 None:intergenic
GATGGGCCTCGGCACCGCAC+CGG 0.552144 1_1:+78993920 Msa0046680:CDS
TATTGAAGTATCAGAGATTG+TGG 0.554195 1_1:+78994353 Msa0046680:CDS
AGGACTACTTCAGGGACTGT+AGG 0.556376 1_1:-78993864 None:intergenic
TAGATCATCAAGAAGAGGCT+TGG 0.556426 1_1:-78995121 None:intergenic
TCATCAAGAAGAGGCTTGGT+TGG 0.556818 1_1:-78995117 None:intergenic
AGAGCAGGAACAATGAGCTC+AGG 0.564156 1_1:-78994140 None:intergenic
ATTACTTGATTCACTGCAGG+AGG 0.566545 1_1:-78994501 None:intergenic
TCCCCTCCTCCACCGGACAA+CGG 0.566967 1_1:+78993886 Msa0046680:CDS
GCGGTGCCGAGGCCCATCAC+CGG 0.568831 1_1:-78993915 None:intergenic
GCAAGTCTGTCTCATCATAG+TGG 0.572380 1_1:+78995208 Msa0046680:three_prime_UTR
TAATAGGTGGAAGTCAACCT+TGG 0.576953 1_1:+78994634 Msa0046680:intron
GTTTAGTAGTAATTGGCCAA+TGG 0.578679 1_1:-78994311 None:intergenic
TGCAGGAGGGATGGTTGCAA+AGG 0.578968 1_1:-78994487 None:intergenic
TCCCATAGATCATCAAGAAG+AGG 0.583002 1_1:-78995126 None:intergenic
CGCACCGGAAGCAACCAGTA+AGG 0.584380 1_1:+78993935 Msa0046680:CDS
ACATGGCAAGACTATAGCTC+AGG 0.585566 1_1:+78994795 Msa0046680:CDS
CTTCGATGGCTATATGAGCA+AGG 0.590577 1_1:+78994964 Msa0046680:CDS
GTCCTTGAAGCCATCAAACA+AGG 0.591634 1_1:+78993975 Msa0046680:CDS
CACCGGACAACGGAAAATGC+CGG 0.597803 1_1:+78993896 Msa0046680:CDS
CAGGGGTGCTAATTTAGTGA+TGG 0.600153 1_1:+78994741 Msa0046680:CDS
AGGAGGGGAGGACTACTTCA+GGG 0.602610 1_1:-78993872 None:intergenic
TTAAGAGCTATGACAAGGAG+AGG 0.604664 1_1:+78995001 Msa0046680:CDS
GCCTTCTCACCCCTTAGGAA+AGG 0.609336 1_1:+78994712 Msa0046680:CDS
AAAGAATTGGCTGATGCACA+TGG 0.613616 1_1:+78994778 Msa0046680:CDS
CTTTGATTGGTCATTGACTG+AGG 0.619859 1_1:+78995044 Msa0046680:CDS
CTTACTGGTTGCTTCCGGTG+CGG 0.628936 1_1:-78993934 None:intergenic
CTGCAAGGAAAAGGGTATTG+TGG 0.631813 1_1:+78994684 Msa0046680:CDS
CTGCTAGCACCTTTCCTAAG+GGG 0.635830 1_1:-78994721 None:intergenic
TGTGGTTAAGAGCTATGACA+AGG 0.641038 1_1:+78994996 Msa0046680:CDS
CATCAAGAGAGACTCATCAA+AGG 0.641861 1_1:+78995093 Msa0046680:CDS
TGGCCAATTACTACTAAACC+AGG 0.647399 1_1:+78994315 Msa0046680:CDS
ATTGTGGAATTTGATATGAA+AGG 0.649138 1_1:+78994369 Msa0046680:CDS
GAAACTTAGAGCCTTCTGCA+AGG 0.650710 1_1:+78994669 Msa0046680:CDS
CTTAGGAAAGGTGCTAGCAG+GGG 0.654145 1_1:+78994724 Msa0046680:CDS
TTACTTGATTCACTGCAGGA+GGG 0.664815 1_1:-78994500 None:intergenic
AATTTGATATGAAAGGTGTG+TGG 0.691006 1_1:+78994376 Msa0046680:CDS
TGCAGCTGCTGCATATGGTG+TGG 0.691514 1_1:+78994013 Msa0046680:CDS
TGTGAATGTGAAATAAAGGG+TGG 0.719158 1_1:-78993781 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAAAATTTTGCATTAT+GGG - chr1_1:78993728-78993747 None:intergenic 10.0%
!!! ATATTAAAAATTTTGCATTA+TGG - chr1_1:78993729-78993748 None:intergenic 10.0%
!!! TCTATTTATAATAGAATTTT+AGG - chr1_1:78993753-78993772 None:intergenic 10.0%
!!! TATTAAAAATTTTGCATTAT+GGG - chr1_1:78993728-78993747 None:intergenic 10.0%
!!! ATATTAAAAATTTTGCATTA+TGG - chr1_1:78993729-78993748 None:intergenic 10.0%
!!! TCTATTTATAATAGAATTTT+AGG - chr1_1:78993753-78993772 None:intergenic 10.0%
!!! ATTAAAAATTTTGCATTATG+GGG - chr1_1:78993727-78993746 None:intergenic 15.0%
!!! TGTTATTTCAAAAATCAATT+TGG + chr1_1:78995369-78995388 Msa0046680:three_prime_UTR 15.0%
!!! ATTAAAAATTTTGCATTATG+GGG - chr1_1:78993727-78993746 None:intergenic 15.0%
!!! TGTTATTTCAAAAATCAATT+TGG + chr1_1:78995369-78995388 Msa0046680:three_prime_UTR 15.0%
!!! TCTTTGTTACTTCTAAATTA+TGG + chr1_1:78994102-78994121 Msa0046680:CDS 20.0%
!!! CTTTGTTACTTCTAAATTAT+GGG + chr1_1:78994103-78994122 Msa0046680:CDS 20.0%
!! ACATATGAAATCATGTAAAA+TGG - chr1_1:78994564-78994583 None:intergenic 20.0%
!!! AAATTAATTTGGATCCTAAT+AGG + chr1_1:78994618-78994637 Msa0046680:intron 20.0%
!! TATATAATATGATCTTAGCA+TGG + chr1_1:78994829-78994848 Msa0046680:intron 20.0%
!! AATTTAATGTCACAATACTT+TGG + chr1_1:78994932-78994951 Msa0046680:intron 20.0%
!!! TCTTTGTTACTTCTAAATTA+TGG + chr1_1:78994102-78994121 Msa0046680:CDS 20.0%
!!! CTTTGTTACTTCTAAATTAT+GGG + chr1_1:78994103-78994122 Msa0046680:CDS 20.0%
!! ACATATGAAATCATGTAAAA+TGG - chr1_1:78994564-78994583 None:intergenic 20.0%
!!! AAATTAATTTGGATCCTAAT+AGG + chr1_1:78994618-78994637 Msa0046680:intron 20.0%
!! TATATAATATGATCTTAGCA+TGG + chr1_1:78994829-78994848 Msa0046680:intron 20.0%
!! AATTTAATGTCACAATACTT+TGG + chr1_1:78994932-78994951 Msa0046680:intron 20.0%
! TGTTGTGAATGTGAAATAAA+GGG - chr1_1:78993787-78993806 None:intergenic 25.0%
! ATGTTGTGAATGTGAAATAA+AGG - chr1_1:78993788-78993807 None:intergenic 25.0%
! TGATAAGAAGAATGTTGAAT+TGG - chr1_1:78993811-78993830 None:intergenic 25.0%
! ATTGTGGAATTTGATATGAA+AGG + chr1_1:78994369-78994388 Msa0046680:CDS 25.0%
! CAATGATATACTCAAAGAAT+TGG + chr1_1:78994765-78994784 Msa0046680:CDS 25.0%
!! AATCAAAGATTTGCAAGTTT+TGG - chr1_1:78995032-78995051 None:intergenic 25.0%
! AAAACTTGCAAATCTTTGAT+TGG + chr1_1:78995031-78995050 Msa0046680:CDS 25.0%
! TTCATATTTAAGCCTTCATT+TGG - chr1_1:78995511-78995530 None:intergenic 25.0%
! TGTTGTGAATGTGAAATAAA+GGG - chr1_1:78993787-78993806 None:intergenic 25.0%
! ATGTTGTGAATGTGAAATAA+AGG - chr1_1:78993788-78993807 None:intergenic 25.0%
! TGATAAGAAGAATGTTGAAT+TGG - chr1_1:78993811-78993830 None:intergenic 25.0%
! ATTGTGGAATTTGATATGAA+AGG + chr1_1:78994369-78994388 Msa0046680:CDS 25.0%
! CAATGATATACTCAAAGAAT+TGG + chr1_1:78994765-78994784 Msa0046680:CDS 25.0%
!! AATCAAAGATTTGCAAGTTT+TGG - chr1_1:78995032-78995051 None:intergenic 25.0%
! AAAACTTGCAAATCTTTGAT+TGG + chr1_1:78995031-78995050 Msa0046680:CDS 25.0%
! TTCATATTTAAGCCTTCATT+TGG - chr1_1:78995511-78995530 None:intergenic 25.0%
! AAAATTTTGCATTATGGGGT+AGG - chr1_1:78993723-78993742 None:intergenic 30.0%
TCAACCTAGCATAAACAAAA+TGG + chr1_1:78993833-78993852 Msa0046680:exon 30.0%
! ATCTTTTGTAGTAACCTTAC+TGG - chr1_1:78993952-78993971 None:intergenic 30.0%
! ATGTCTATAACCTTGTTTGA+TGG - chr1_1:78993988-78994007 None:intergenic 30.0%
CAATCTCTGATACTTCAATA+GGG - chr1_1:78994353-78994372 None:intergenic 30.0%
ACAATCTCTGATACTTCAAT+AGG - chr1_1:78994354-78994373 None:intergenic 30.0%
! TATTGAAGTATCAGAGATTG+TGG + chr1_1:78994353-78994372 Msa0046680:CDS 30.0%
! AATTTGATATGAAAGGTGTG+TGG + chr1_1:78994376-78994395 Msa0046680:CDS 30.0%
TTGGAAGAATGTCAAAAACT+TGG + chr1_1:78994405-78994424 Msa0046680:CDS 30.0%
! TTAATTTGGATCCTAATAGG+TGG + chr1_1:78994621-78994640 Msa0046680:intron 30.0%
ATTCACTCCAAATTAGAAGT+TGG - chr1_1:78994856-78994875 None:intergenic 30.0%
! AATCGGTTCAATTTGAAACA+TGG + chr1_1:78995161-78995180 Msa0046680:three_prime_UTR 30.0%
!!! GAGTTTTGATTCTACATGTA+CGG + chr1_1:78995281-78995300 Msa0046680:three_prime_UTR 30.0%
ACTTTATCTCTCTATTGCTT+TGG - chr1_1:78995453-78995472 None:intergenic 30.0%
! AAAATTTTGCATTATGGGGT+AGG - chr1_1:78993723-78993742 None:intergenic 30.0%
TCAACCTAGCATAAACAAAA+TGG + chr1_1:78993833-78993852 Msa0046680:exon 30.0%
! ATCTTTTGTAGTAACCTTAC+TGG - chr1_1:78993952-78993971 None:intergenic 30.0%
! ATGTCTATAACCTTGTTTGA+TGG - chr1_1:78993988-78994007 None:intergenic 30.0%
CAATCTCTGATACTTCAATA+GGG - chr1_1:78994353-78994372 None:intergenic 30.0%
ACAATCTCTGATACTTCAAT+AGG - chr1_1:78994354-78994373 None:intergenic 30.0%
! TATTGAAGTATCAGAGATTG+TGG + chr1_1:78994353-78994372 Msa0046680:CDS 30.0%
! AATTTGATATGAAAGGTGTG+TGG + chr1_1:78994376-78994395 Msa0046680:CDS 30.0%
TTGGAAGAATGTCAAAAACT+TGG + chr1_1:78994405-78994424 Msa0046680:CDS 30.0%
! TTAATTTGGATCCTAATAGG+TGG + chr1_1:78994621-78994640 Msa0046680:intron 30.0%
ATTCACTCCAAATTAGAAGT+TGG - chr1_1:78994856-78994875 None:intergenic 30.0%
! AATCGGTTCAATTTGAAACA+TGG + chr1_1:78995161-78995180 Msa0046680:three_prime_UTR 30.0%
!!! GAGTTTTGATTCTACATGTA+CGG + chr1_1:78995281-78995300 Msa0046680:three_prime_UTR 30.0%
ACTTTATCTCTCTATTGCTT+TGG - chr1_1:78995453-78995472 None:intergenic 30.0%
TGTGAATGTGAAATAAAGGG+TGG - chr1_1:78993784-78993803 None:intergenic 35.0%
TATGGTGTGGAAAAATCTGT+TGG + chr1_1:78994026-78994045 Msa0046680:CDS 35.0%
!! ATTGCAGAAGCACTTAAACT+TGG + chr1_1:78994056-78994075 Msa0046680:CDS 35.0%
!!! GTATACATGCTTGTTTTTGC+AGG + chr1_1:78994253-78994272 Msa0046680:intron 35.0%
GACTCTTCAACTAGAATACT+TGG + chr1_1:78994275-78994294 Msa0046680:CDS 35.0%
!!! TGGACCTTATTTTGATCCAT+TGG + chr1_1:78994295-78994314 Msa0046680:CDS 35.0%
TTGGCCAATGGATCAAAATA+AGG - chr1_1:78994302-78994321 None:intergenic 35.0%
GTTTAGTAGTAATTGGCCAA+TGG - chr1_1:78994314-78994333 None:intergenic 35.0%
TCACCTGGTTTAGTAGTAAT+TGG - chr1_1:78994321-78994340 None:intergenic 35.0%
! ATAGGGTATTTAACTTCACC+TGG - chr1_1:78994336-78994355 None:intergenic 35.0%
TCAATTACTTGATTCACTGC+AGG - chr1_1:78994507-78994526 None:intergenic 35.0%
TGGGATGAAGAATGAACAAT+CGG + chr1_1:78995144-78995163 Msa0046680:exon 35.0%
AGAAAGTTGTCACCAAATGA+AGG + chr1_1:78995496-78995515 Msa0046680:three_prime_UTR 35.0%
TGTGAATGTGAAATAAAGGG+TGG - chr1_1:78993784-78993803 None:intergenic 35.0%
TATGGTGTGGAAAAATCTGT+TGG + chr1_1:78994026-78994045 Msa0046680:CDS 35.0%
!! ATTGCAGAAGCACTTAAACT+TGG + chr1_1:78994056-78994075 Msa0046680:CDS 35.0%
!!! GTATACATGCTTGTTTTTGC+AGG + chr1_1:78994253-78994272 Msa0046680:intron 35.0%
GACTCTTCAACTAGAATACT+TGG + chr1_1:78994275-78994294 Msa0046680:CDS 35.0%
!!! TGGACCTTATTTTGATCCAT+TGG + chr1_1:78994295-78994314 Msa0046680:CDS 35.0%
TTGGCCAATGGATCAAAATA+AGG - chr1_1:78994302-78994321 None:intergenic 35.0%
GTTTAGTAGTAATTGGCCAA+TGG - chr1_1:78994314-78994333 None:intergenic 35.0%
TCACCTGGTTTAGTAGTAAT+TGG - chr1_1:78994321-78994340 None:intergenic 35.0%
! ATAGGGTATTTAACTTCACC+TGG - chr1_1:78994336-78994355 None:intergenic 35.0%
TCAATTACTTGATTCACTGC+AGG - chr1_1:78994507-78994526 None:intergenic 35.0%
TGGGATGAAGAATGAACAAT+CGG + chr1_1:78995144-78995163 Msa0046680:exon 35.0%
AGAAAGTTGTCACCAAATGA+AGG + chr1_1:78995496-78995515 Msa0046680:three_prime_UTR 35.0%
!! GCAGCCATTTTGTTTATGCT+AGG - chr1_1:78993840-78993859 None:intergenic 40.0%
! AACCTTGTTTGATGGCTTCA+AGG - chr1_1:78993980-78993999 None:intergenic 40.0%
TGGCCAATTACTACTAAACC+AGG + chr1_1:78994315-78994334 Msa0046680:CDS 40.0%
TTACTTGATTCACTGCAGGA+GGG - chr1_1:78994503-78994522 None:intergenic 40.0%
ATTACTTGATTCACTGCAGG+AGG - chr1_1:78994504-78994523 None:intergenic 40.0%
! AAGGTTGACTTCCACCTATT+AGG - chr1_1:78994635-78994654 None:intergenic 40.0%
TAATAGGTGGAAGTCAACCT+TGG + chr1_1:78994634-78994653 Msa0046680:intron 40.0%
! AATACCCTTTTCCTTGCAGA+AGG - chr1_1:78994683-78994702 None:intergenic 40.0%
AAAGAATTGGCTGATGCACA+TGG + chr1_1:78994778-78994797 Msa0046680:CDS 40.0%
GCATGGACCAACTTCTAATT+TGG + chr1_1:78994846-78994865 Msa0046680:intron 40.0%
TTTGGCAGATTTGTCTTCGA+TGG + chr1_1:78994950-78994969 Msa0046680:intron 40.0%
!! TGAGCAAGGATTGACTTTTG+TGG + chr1_1:78994978-78994997 Msa0046680:CDS 40.0%
TGTGGTTAAGAGCTATGACA+AGG + chr1_1:78994996-78995015 Msa0046680:CDS 40.0%
TTAAGAGCTATGACAAGGAG+AGG + chr1_1:78995001-78995020 Msa0046680:CDS 40.0%
! CTTTGATTGGTCATTGACTG+AGG + chr1_1:78995044-78995063 Msa0046680:CDS 40.0%
CTTTGATGAGTCTCTCTTGA+TGG - chr1_1:78995095-78995114 None:intergenic 40.0%
CATCAAGAGAGACTCATCAA+AGG + chr1_1:78995093-78995112 Msa0046680:CDS 40.0%
TAGATCATCAAGAAGAGGCT+TGG - chr1_1:78995124-78995143 None:intergenic 40.0%
! AGCCTCTTCTTGATGATCTA+TGG + chr1_1:78995124-78995143 Msa0046680:CDS 40.0%
! GCCTCTTCTTGATGATCTAT+GGG + chr1_1:78995125-78995144 Msa0046680:CDS 40.0%
TCCCATAGATCATCAAGAAG+AGG - chr1_1:78995129-78995148 None:intergenic 40.0%
! CTCTATTGCTTTGGTTTCTG+TGG - chr1_1:78995444-78995463 None:intergenic 40.0%
!! GCAGCCATTTTGTTTATGCT+AGG - chr1_1:78993840-78993859 None:intergenic 40.0%
! AACCTTGTTTGATGGCTTCA+AGG - chr1_1:78993980-78993999 None:intergenic 40.0%
TGGCCAATTACTACTAAACC+AGG + chr1_1:78994315-78994334 Msa0046680:CDS 40.0%
TTACTTGATTCACTGCAGGA+GGG - chr1_1:78994503-78994522 None:intergenic 40.0%
ATTACTTGATTCACTGCAGG+AGG - chr1_1:78994504-78994523 None:intergenic 40.0%
! AAGGTTGACTTCCACCTATT+AGG - chr1_1:78994635-78994654 None:intergenic 40.0%
TAATAGGTGGAAGTCAACCT+TGG + chr1_1:78994634-78994653 Msa0046680:intron 40.0%
! AATACCCTTTTCCTTGCAGA+AGG - chr1_1:78994683-78994702 None:intergenic 40.0%
AAAGAATTGGCTGATGCACA+TGG + chr1_1:78994778-78994797 Msa0046680:CDS 40.0%
GCATGGACCAACTTCTAATT+TGG + chr1_1:78994846-78994865 Msa0046680:intron 40.0%
TTTGGCAGATTTGTCTTCGA+TGG + chr1_1:78994950-78994969 Msa0046680:intron 40.0%
!! TGAGCAAGGATTGACTTTTG+TGG + chr1_1:78994978-78994997 Msa0046680:CDS 40.0%
TGTGGTTAAGAGCTATGACA+AGG + chr1_1:78994996-78995015 Msa0046680:CDS 40.0%
TTAAGAGCTATGACAAGGAG+AGG + chr1_1:78995001-78995020 Msa0046680:CDS 40.0%
! CTTTGATTGGTCATTGACTG+AGG + chr1_1:78995044-78995063 Msa0046680:CDS 40.0%
CTTTGATGAGTCTCTCTTGA+TGG - chr1_1:78995095-78995114 None:intergenic 40.0%
CATCAAGAGAGACTCATCAA+AGG + chr1_1:78995093-78995112 Msa0046680:CDS 40.0%
TAGATCATCAAGAAGAGGCT+TGG - chr1_1:78995124-78995143 None:intergenic 40.0%
! AGCCTCTTCTTGATGATCTA+TGG + chr1_1:78995124-78995143 Msa0046680:CDS 40.0%
! GCCTCTTCTTGATGATCTAT+GGG + chr1_1:78995125-78995144 Msa0046680:CDS 40.0%
TCCCATAGATCATCAAGAAG+AGG - chr1_1:78995129-78995148 None:intergenic 40.0%
! CTCTATTGCTTTGGTTTCTG+TGG - chr1_1:78995444-78995463 None:intergenic 40.0%
! GTAACCTTACTGGTTGCTTC+CGG - chr1_1:78993942-78993961 None:intergenic 45.0%
GTCCTTGAAGCCATCAAACA+AGG + chr1_1:78993975-78993994 Msa0046680:CDS 45.0%
TTTGATGCAGCTGCTGCATA+TGG + chr1_1:78994008-78994027 Msa0046680:CDS 45.0%
CTTAGAGATTTCTGCAGAGC+AGG - chr1_1:78994158-78994177 None:intergenic 45.0%
CTGCTCTGCAGAAATCTCTA+AGG + chr1_1:78994156-78994175 Msa0046680:CDS 45.0%
! GAAAGGTGTGTGGACATCAT+TGG + chr1_1:78994386-78994405 Msa0046680:CDS 45.0%
TGAGAAGTTGCTAGCTCCAA+TGG - chr1_1:78994442-78994461 None:intergenic 45.0%
GTTTCTCTTGTTGCCATCCA+AGG - chr1_1:78994654-78994673 None:intergenic 45.0%
GAAACTTAGAGCCTTCTGCA+AGG + chr1_1:78994669-78994688 Msa0046680:CDS 45.0%
TAGAGCCTTCTGCAAGGAAA+AGG + chr1_1:78994675-78994694 Msa0046680:CDS 45.0%
AGAGCCTTCTGCAAGGAAAA+GGG + chr1_1:78994676-78994695 Msa0046680:CDS 45.0%
!! CTGCAAGGAAAAGGGTATTG+TGG + chr1_1:78994684-78994703 Msa0046680:CDS 45.0%
!! CAGGGGTGCTAATTTAGTGA+TGG + chr1_1:78994741-78994760 Msa0046680:CDS 45.0%
ACATGGCAAGACTATAGCTC+AGG + chr1_1:78994795-78994814 Msa0046680:CDS 45.0%
CTTCGATGGCTATATGAGCA+AGG + chr1_1:78994964-78994983 Msa0046680:CDS 45.0%
! TCATCAAGAAGAGGCTTGGT+TGG - chr1_1:78995120-78995139 None:intergenic 45.0%
GCAAGTCTGTCTCATCATAG+TGG + chr1_1:78995208-78995227 Msa0046680:three_prime_UTR 45.0%
! GTAACCTTACTGGTTGCTTC+CGG - chr1_1:78993942-78993961 None:intergenic 45.0%
GTCCTTGAAGCCATCAAACA+AGG + chr1_1:78993975-78993994 Msa0046680:CDS 45.0%
TTTGATGCAGCTGCTGCATA+TGG + chr1_1:78994008-78994027 Msa0046680:CDS 45.0%
CTTAGAGATTTCTGCAGAGC+AGG - chr1_1:78994158-78994177 None:intergenic 45.0%
CTGCTCTGCAGAAATCTCTA+AGG + chr1_1:78994156-78994175 Msa0046680:CDS 45.0%
! GAAAGGTGTGTGGACATCAT+TGG + chr1_1:78994386-78994405 Msa0046680:CDS 45.0%
TGAGAAGTTGCTAGCTCCAA+TGG - chr1_1:78994442-78994461 None:intergenic 45.0%
GTTTCTCTTGTTGCCATCCA+AGG - chr1_1:78994654-78994673 None:intergenic 45.0%
GAAACTTAGAGCCTTCTGCA+AGG + chr1_1:78994669-78994688 Msa0046680:CDS 45.0%
TAGAGCCTTCTGCAAGGAAA+AGG + chr1_1:78994675-78994694 Msa0046680:CDS 45.0%
AGAGCCTTCTGCAAGGAAAA+GGG + chr1_1:78994676-78994695 Msa0046680:CDS 45.0%
!! CTGCAAGGAAAAGGGTATTG+TGG + chr1_1:78994684-78994703 Msa0046680:CDS 45.0%
!! CAGGGGTGCTAATTTAGTGA+TGG + chr1_1:78994741-78994760 Msa0046680:CDS 45.0%
ACATGGCAAGACTATAGCTC+AGG + chr1_1:78994795-78994814 Msa0046680:CDS 45.0%
CTTCGATGGCTATATGAGCA+AGG + chr1_1:78994964-78994983 Msa0046680:CDS 45.0%
! TCATCAAGAAGAGGCTTGGT+TGG - chr1_1:78995120-78995139 None:intergenic 45.0%
GCAAGTCTGTCTCATCATAG+TGG + chr1_1:78995208-78995227 Msa0046680:three_prime_UTR 45.0%
!!! AATTATTGATTAAATTAATT+TGG + chr1_1:78994607-78994626 Msa0046680:intron 5.0%
!!! TATTTTTTCTTTATAAATTA+TGG - chr1_1:78995414-78995433 None:intergenic 5.0%
!! ATAATTTATAAAGAAAAAAT+AGG + chr1_1:78995413-78995432 Msa0046680:three_prime_UTR 5.0%
!!! AATTATTGATTAAATTAATT+TGG + chr1_1:78994607-78994626 Msa0046680:intron 5.0%
!!! TATTTTTTCTTTATAAATTA+TGG - chr1_1:78995414-78995433 None:intergenic 5.0%
!! ATAATTTATAAAGAAAAAAT+AGG + chr1_1:78995413-78995432 Msa0046680:three_prime_UTR 5.0%
AGGACTACTTCAGGGACTGT+AGG - chr1_1:78993867-78993886 None:intergenic 50.0%
ACAACGGAAAATGCCGGTGA+TGG + chr1_1:78993902-78993921 Msa0046680:CDS 50.0%
CAACGGAAAATGCCGGTGAT+GGG + chr1_1:78993903-78993922 Msa0046680:CDS 50.0%
AGAGCAGGAACAATGAGCTC+AGG - chr1_1:78994143-78994162 None:intergenic 50.0%
CTTGGTCTCACCAAAGCCAT+TGG + chr1_1:78994423-78994442 Msa0046680:CDS 50.0%
GTTGCTAGCTCCAATGGCTT+TGG - chr1_1:78994436-78994455 None:intergenic 50.0%
TTGATTCACTGCAGGAGGGA+TGG - chr1_1:78994499-78994518 None:intergenic 50.0%
AGGTGGAAGTCAACCTTGGA+TGG + chr1_1:78994638-78994657 Msa0046680:intron 50.0%
TAACTGCCTTCTCACCCCTT+AGG + chr1_1:78994707-78994726 Msa0046680:CDS 50.0%
ACCTTTCCTAAGGGGTGAGA+AGG - chr1_1:78994716-78994735 None:intergenic 50.0%
CTGCTAGCACCTTTCCTAAG+GGG - chr1_1:78994724-78994743 None:intergenic 50.0%
CCTGCTAGCACCTTTCCTAA+GGG - chr1_1:78994725-78994744 None:intergenic 50.0%
!! CCTTAGGAAAGGTGCTAGCA+GGG + chr1_1:78994723-78994742 Msa0046680:CDS 50.0%
!! CTTAGGAAAGGTGCTAGCAG+GGG + chr1_1:78994724-78994743 Msa0046680:CDS 50.0%
AGGACTACTTCAGGGACTGT+AGG - chr1_1:78993867-78993886 None:intergenic 50.0%
ACAACGGAAAATGCCGGTGA+TGG + chr1_1:78993902-78993921 Msa0046680:CDS 50.0%
CAACGGAAAATGCCGGTGAT+GGG + chr1_1:78993903-78993922 Msa0046680:CDS 50.0%
AGAGCAGGAACAATGAGCTC+AGG - chr1_1:78994143-78994162 None:intergenic 50.0%
CTTGGTCTCACCAAAGCCAT+TGG + chr1_1:78994423-78994442 Msa0046680:CDS 50.0%
GTTGCTAGCTCCAATGGCTT+TGG - chr1_1:78994436-78994455 None:intergenic 50.0%
TTGATTCACTGCAGGAGGGA+TGG - chr1_1:78994499-78994518 None:intergenic 50.0%
AGGTGGAAGTCAACCTTGGA+TGG + chr1_1:78994638-78994657 Msa0046680:intron 50.0%
TAACTGCCTTCTCACCCCTT+AGG + chr1_1:78994707-78994726 Msa0046680:CDS 50.0%
ACCTTTCCTAAGGGGTGAGA+AGG - chr1_1:78994716-78994735 None:intergenic 50.0%
CTGCTAGCACCTTTCCTAAG+GGG - chr1_1:78994724-78994743 None:intergenic 50.0%
CCTGCTAGCACCTTTCCTAA+GGG - chr1_1:78994725-78994744 None:intergenic 50.0%
!! CCTTAGGAAAGGTGCTAGCA+GGG + chr1_1:78994723-78994742 Msa0046680:CDS 50.0%
!! CTTAGGAAAGGTGCTAGCAG+GGG + chr1_1:78994724-78994743 Msa0046680:CDS 50.0%
AGGAGGGGAGGACTACTTCA+GGG - chr1_1:78993875-78993894 None:intergenic 55.0%
! CATTTTCCGTTGTCCGGTGG+AGG - chr1_1:78993895-78993914 None:intergenic 55.0%
CACCGGACAACGGAAAATGC+CGG + chr1_1:78993896-78993915 Msa0046680:CDS 55.0%
! CACCGGCATTTTCCGTTGTC+CGG - chr1_1:78993901-78993920 None:intergenic 55.0%
!! AAAATGCCGGTGATGGGCCT+CGG + chr1_1:78993909-78993928 Msa0046680:CDS 55.0%
! CTTACTGGTTGCTTCCGGTG+CGG - chr1_1:78993937-78993956 None:intergenic 55.0%
TGCAGCTGCTGCATATGGTG+TGG + chr1_1:78994013-78994032 Msa0046680:CDS 55.0%
TGCAGGAGGGATGGTTGCAA+AGG - chr1_1:78994490-78994509 None:intergenic 55.0%
GCCTTCTCACCCCTTAGGAA+AGG + chr1_1:78994712-78994731 Msa0046680:CDS 55.0%
!! CCCTTAGGAAAGGTGCTAGC+AGG + chr1_1:78994722-78994741 Msa0046680:CDS 55.0%
CCCTGCTAGCACCTTTCCTA+AGG - chr1_1:78994726-78994745 None:intergenic 55.0%
AGGAGGGGAGGACTACTTCA+GGG - chr1_1:78993875-78993894 None:intergenic 55.0%
! CATTTTCCGTTGTCCGGTGG+AGG - chr1_1:78993895-78993914 None:intergenic 55.0%
CACCGGACAACGGAAAATGC+CGG + chr1_1:78993896-78993915 Msa0046680:CDS 55.0%
! CACCGGCATTTTCCGTTGTC+CGG - chr1_1:78993901-78993920 None:intergenic 55.0%
!! AAAATGCCGGTGATGGGCCT+CGG + chr1_1:78993909-78993928 Msa0046680:CDS 55.0%
! CTTACTGGTTGCTTCCGGTG+CGG - chr1_1:78993937-78993956 None:intergenic 55.0%
TGCAGCTGCTGCATATGGTG+TGG + chr1_1:78994013-78994032 Msa0046680:CDS 55.0%
TGCAGGAGGGATGGTTGCAA+AGG - chr1_1:78994490-78994509 None:intergenic 55.0%
GCCTTCTCACCCCTTAGGAA+AGG + chr1_1:78994712-78994731 Msa0046680:CDS 55.0%
!! CCCTTAGGAAAGGTGCTAGC+AGG + chr1_1:78994722-78994741 Msa0046680:CDS 55.0%
CCCTGCTAGCACCTTTCCTA+AGG - chr1_1:78994726-78994745 None:intergenic 55.0%
GAGGAGGGGAGGACTACTTC+AGG - chr1_1:78993876-78993895 None:intergenic 60.0%
TTCCGTTGTCCGGTGGAGGA+GGG - chr1_1:78993891-78993910 None:intergenic 60.0%
TTTCCGTTGTCCGGTGGAGG+AGG - chr1_1:78993892-78993911 None:intergenic 60.0%
! CGGCATTTTCCGTTGTCCGG+TGG - chr1_1:78993898-78993917 None:intergenic 60.0%
CGCACCGGAAGCAACCAGTA+AGG + chr1_1:78993935-78993954 Msa0046680:CDS 60.0%
GAGGAGGGGAGGACTACTTC+AGG - chr1_1:78993876-78993895 None:intergenic 60.0%
TTCCGTTGTCCGGTGGAGGA+GGG - chr1_1:78993891-78993910 None:intergenic 60.0%
TTTCCGTTGTCCGGTGGAGG+AGG - chr1_1:78993892-78993911 None:intergenic 60.0%
! CGGCATTTTCCGTTGTCCGG+TGG - chr1_1:78993898-78993917 None:intergenic 60.0%
CGCACCGGAAGCAACCAGTA+AGG + chr1_1:78993935-78993954 Msa0046680:CDS 60.0%
GTAGTCCTCCCCTCCTCCAC+CGG + chr1_1:78993879-78993898 Msa0046680:CDS 65.0%
TCCCCTCCTCCACCGGACAA+CGG + chr1_1:78993886-78993905 Msa0046680:CDS 65.0%
TCCGTTGTCCGGTGGAGGAG+GGG - chr1_1:78993890-78993909 None:intergenic 65.0%
GTAGTCCTCCCCTCCTCCAC+CGG + chr1_1:78993879-78993898 Msa0046680:CDS 65.0%
TCCCCTCCTCCACCGGACAA+CGG + chr1_1:78993886-78993905 Msa0046680:CDS 65.0%
TCCGTTGTCCGGTGGAGGAG+GGG - chr1_1:78993890-78993909 None:intergenic 65.0%
GTTGTCCGGTGGAGGAGGGG+AGG - chr1_1:78993887-78993906 None:intergenic 70.0%
! TTGCTTCCGGTGCGGTGCCG+AGG - chr1_1:78993929-78993948 None:intergenic 70.0%
GTTGTCCGGTGGAGGAGGGG+AGG - chr1_1:78993887-78993906 None:intergenic 70.0%
! TTGCTTCCGGTGCGGTGCCG+AGG - chr1_1:78993929-78993948 None:intergenic 70.0%
! GCGGTGCCGAGGCCCATCAC+CGG - chr1_1:78993918-78993937 None:intergenic 75.0%
GATGGGCCTCGGCACCGCAC+CGG + chr1_1:78993920-78993939 Msa0046680:CDS 75.0%
! GCGGTGCCGAGGCCCATCAC+CGG - chr1_1:78993918-78993937 None:intergenic 75.0%
GATGGGCCTCGGCACCGCAC+CGG + chr1_1:78993920-78993939 Msa0046680:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 78993720 78995530 78993720 ID=Msa0046680;Name=Msa0046680
chr1_1 mRNA 78993720 78995530 78993720 ID=Msa0046680-mRNA-1;Parent=Msa0046680;Name=Msa0046680-mRNA-1;_AED=0.03;_eAED=0.03;_QI=132|1|1|1|1|1|4|372|315
chr1_1 exon 78993720 78994177 78993720 ID=Msa0046680-mRNA-1:exon:27193;Parent=Msa0046680-mRNA-1
chr1_1 exon 78994275 78994518 78994275 ID=Msa0046680-mRNA-1:exon:27194;Parent=Msa0046680-mRNA-1
chr1_1 exon 78994640 78994816 78994640 ID=Msa0046680-mRNA-1:exon:27195;Parent=Msa0046680-mRNA-1
chr1_1 exon 78994958 78995530 78994958 ID=Msa0046680-mRNA-1:exon:27196;Parent=Msa0046680-mRNA-1
chr1_1 five_prime_UTR 78993720 78993851 78993720 ID=Msa0046680-mRNA-1:five_prime_utr;Parent=Msa0046680-mRNA-1
chr1_1 CDS 78993852 78994177 78993852 ID=Msa0046680-mRNA-1:cds;Parent=Msa0046680-mRNA-1
chr1_1 CDS 78994275 78994518 78994275 ID=Msa0046680-mRNA-1:cds;Parent=Msa0046680-mRNA-1
chr1_1 CDS 78994640 78994816 78994640 ID=Msa0046680-mRNA-1:cds;Parent=Msa0046680-mRNA-1
chr1_1 CDS 78994958 78995158 78994958 ID=Msa0046680-mRNA-1:cds;Parent=Msa0046680-mRNA-1
chr1_1 three_prime_UTR 78995159 78995530 78995159 ID=Msa0046680-mRNA-1:three_prime_utr;Parent=Msa0046680-mRNA-1
Gene Sequence

>Msa0046680

ATGGCTGCTGCACCTACAGTCCCTGAAGTAGTCCTCCCCTCCTCCACCGGACAACGGAAAATGCCGGTGATGGGCCTCGGCACCGCACCGGAAGCAACCAGTAAGGTTACTACAAAAGATGCTGTCCTTGAAGCCATCAAACAAGGTTATAGACATTTTGATGCAGCTGCTGCATATGGTGTGGAAAAATCTGTTGGAGAAGCTATTGCAGAAGCACTTAAACTTGGACTTATTTCATCTAGAGATGAACTCTTTGTTACTTCTAAATTATGGGTTACAGATAATCATCCTGAGCTCATTGTTCCTGCTCTGCAGAAATCTCTAAGGACTCTTCAACTAGAATACTTGGACCTTATTTTGATCCATTGGCCAATTACTACTAAACCAGGTGAAGTTAAATACCCTATTGAAGTATCAGAGATTGTGGAATTTGATATGAAAGGTGTGTGGACATCATTGGAAGAATGTCAAAAACTTGGTCTCACCAAAGCCATTGGAGCTAGCAACTTCTCAATCAAGAAGCTTGAAAAATTGCTATCCTTTGCAACCATCCCTCCTGCAGTGAATCAAGTGGAAGTCAACCTTGGATGGCAACAAGAGAAACTTAGAGCCTTCTGCAAGGAAAAGGGTATTGTGGTAACTGCCTTCTCACCCCTTAGGAAAGGTGCTAGCAGGGGTGCTAATTTAGTGATGGACAATGATATACTCAAAGAATTGGCTGATGCACATGGCAAGACTATAGCTCAGATTTGTCTTCGATGGCTATATGAGCAAGGATTGACTTTTGTGGTTAAGAGCTATGACAAGGAGAGGATGAACCAAAACTTGCAAATCTTTGATTGGTCATTGACTGAGGATGATTACAAGAAAATTAGTGAAATCCATCAAGAGAGACTCATCAAAGGACCAACCAAGCCTCTTCTTGATGATCTATGGGATGAAGAATGA

Protein sequence

>Msa0046680

MAAAPTVPEVVLPSSTGQRKMPVMGLGTAPEATSKVTTKDAVLEAIKQGYRHFDAAAAYGVEKSVGEAIAEALKLGLISSRDELFVTSKLWVTDNHPELIVPALQKSLRTLQLEYLDLILIHWPITTKPGEVKYPIEVSEIVEFDMKGVWTSLEECQKLGLTKAIGASNFSIKKLEKLLSFATIPPAVNQVEVNLGWQQEKLRAFCKEKGIVVTAFSPLRKGASRGANLVMDNDILKELADAHGKTIAQICLRWLYEQGLTFVVKSYDKERMNQNLQIFDWSLTEDDYKKISEIHQERLIKGPTKPLLDDLWDEE*