AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1302600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1302600 MtrunA17_Chr4g0075531 98.413 252 2 1 1 250 1 252 0.0 498
Msa1302600 MtrunA17_Chr3g0112271 35.772 246 151 4 7 246 17 261 3.07e-35 127
Msa1302600 MtrunA17_Chr3g0112151 33.333 246 157 4 7 246 86 330 5.64e-35 127
Msa1302600 MtrunA17_Chr3g0112141 32.927 246 158 4 7 246 17 261 1.40e-34 125
Msa1302600 MtrunA17_Chr3g0112171 31.707 246 161 4 7 246 15 259 7.96e-33 120
Msa1302600 MtrunA17_Chr4g0032141 32.932 249 154 5 7 246 56 300 1.14e-31 118
Msa1302600 MtrunA17_Chr7g0239451 33.984 256 156 7 5 248 12 266 3.16e-31 116
Msa1302600 MtrunA17_Chr3g0112261 31.967 244 159 4 9 246 21 263 9.03e-30 112
Msa1302600 MtrunA17_Chr7g0239481 31.200 250 161 5 7 246 15 263 3.49e-28 108
Msa1302600 MtrunA17_Chr7g0239491 32.271 251 160 5 7 248 15 264 2.12e-27 106
Msa1302600 MtrunA17_Chr4g0032181 30.435 230 153 4 23 246 17 245 1.77e-25 100
Msa1302600 MtrunA17_Chr7g0239501 32.400 250 158 5 7 246 16 264 3.55e-25 100
Msa1302600 MtrunA17_Chr7g0239511 31.600 250 160 5 7 246 16 264 4.28e-25 100
Msa1302600 MtrunA17_Chr6g0459281 31.873 251 156 7 6 244 12 259 7.47e-25 99.4
Msa1302600 MtrunA17_Chr7g0268591 28.462 260 165 8 5 248 31 285 1.10e-24 99.8
Msa1302600 MtrunA17_Chr7g0266981 31.518 257 159 8 2 246 8 259 2.43e-24 98.2
Msa1302600 MtrunA17_Chr1g0191751 28.854 253 164 7 6 245 100 349 3.35e-24 99.4
Msa1302600 MtrunA17_Chr6g0459301 31.373 255 156 7 6 246 13 262 5.34e-24 97.1
Msa1302600 MtrunA17_Chr7g0244061 31.502 273 156 10 4 248 26 295 6.56e-24 97.4
Msa1302600 MtrunA17_Chr7g0239461 29.644 253 121 6 5 248 12 216 6.85e-24 95.5
Msa1302600 MtrunA17_Chr7g0272961 27.559 254 168 7 5 245 38 288 1.08e-23 96.7
Msa1302600 MtrunA17_Chr6g0459261 31.641 256 154 8 6 246 24 273 1.89e-23 95.9
Msa1302600 MtrunA17_Chr6g0459351 30.677 251 159 7 6 244 12 259 4.59e-23 94.7
Msa1302600 MtrunA17_Chr4g0040371 31.298 262 158 8 4 248 16 272 4.78e-23 95.1
Msa1302600 MtrunA17_Chr7g0252031 30.502 259 162 9 5 248 33 288 5.98e-23 95.1
Msa1302600 MtrunA17_Chr3g0084871 34.944 269 135 12 5 246 14 269 1.17e-22 94.0
Msa1302600 MtrunA17_Chr4g0044111 30.739 257 161 8 2 246 8 259 1.39e-22 93.6
Msa1302600 MtrunA17_Chr3g0122901 30.350 257 159 9 2 246 70 318 3.93e-22 93.2
Msa1302600 MtrunA17_Chr6g0459271 33.074 257 149 9 6 246 12 261 3.94e-22 92.0
Msa1302600 MtrunA17_Chr4g0044131 28.906 256 163 8 3 245 4 253 2.67e-21 90.1
Msa1302600 MtrunA17_Chr7g0259521 30.120 249 163 7 7 245 6 253 3.28e-21 89.4
Msa1302600 MtrunA17_Chr4g0074511 29.297 256 162 7 6 246 39 290 1.02e-20 89.0
Msa1302600 MtrunA17_Chr7g0266891 30.556 252 158 8 7 246 7 253 5.80e-20 86.3
Msa1302600 MtrunA17_Chr6g0459331 30.830 253 160 8 6 246 12 261 8.27e-20 85.9
Msa1302600 MtrunA17_Chr7g0259531 30.159 252 161 9 7 246 11 259 8.56e-19 83.2
Msa1302600 MtrunA17_Chr4g0026001 28.063 253 164 8 5 246 12 257 9.35e-19 83.2
Msa1302600 MtrunA17_Chr4g0025971 26.984 252 168 7 5 246 12 257 9.35e-19 83.2
Msa1302600 MtrunA17_Chr8g0357481 30.469 256 164 5 4 246 11 265 4.15e-18 81.6
Msa1302600 MtrunA17_Chr7g0270441 29.921 254 164 7 5 247 4 254 1.51e-17 79.7
Msa1302600 MtrunA17_Chr0c30g0494101 29.183 257 161 8 5 246 38 288 1.73e-17 79.7
Msa1302600 MtrunA17_Chr7g0267011 30.159 189 124 6 3 185 4 190 2.24e-17 77.8
Msa1302600 MtrunA17_Chr2g0324021 28.346 254 165 7 5 246 4 252 2.83e-17 79.0
Msa1302600 MtrunA17_Chr7g0267001 28.063 253 151 8 3 245 4 235 1.74e-16 76.6
Msa1302600 MtrunA17_Chr4g0025981 28.740 254 151 11 8 244 42 282 2.34e-16 77.0
Msa1302600 MtrunA17_Chr7g0270451 29.845 258 160 8 3 246 2 252 1.24e-14 71.6
Msa1302600 MtrunA17_Chr1g0182511 27.843 255 168 6 4 245 11 262 1.86e-14 70.9
Msa1302600 MtrunA17_Chr4g0028921 25.954 262 172 8 1 245 5 261 3.03e-14 70.5
Msa1302600 MtrunA17_Chr8g0386201 26.222 225 146 5 3 220 41 252 1.69e-13 69.3
Msa1302600 MtrunA17_Chr8g0355281 28.497 193 123 7 13 191 75 266 4.47e-13 67.8
Msa1302600 MtrunA17_Chr4g0028911 23.256 258 184 6 1 245 5 261 6.08e-13 67.0
Msa1302600 MtrunA17_Chr7g0249571 27.513 189 128 5 10 189 41 229 2.17e-12 65.9
Msa1302600 MtrunA17_Chr7g0266991 28.326 233 137 7 5 227 23 235 7.96e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1302600 AT4G05530.1 72.908 251 66 1 2 250 4 254 1.19e-132 375
Msa1302600 AT5G06060.1 33.858 254 159 5 1 246 1 253 2.15e-35 127
Msa1302600 AT2G29150.1 34.538 249 147 8 7 245 16 258 1.36e-33 122
Msa1302600 AT2G29260.1 33.333 246 157 4 7 246 68 312 2.78e-31 118
Msa1302600 AT2G29360.1 33.197 244 156 5 9 246 18 260 6.01e-31 115
Msa1302600 AT2G29340.2 32.540 252 157 6 5 246 3 251 3.27e-29 111
Msa1302600 AT2G29340.1 32.540 252 157 6 5 246 3 251 6.41e-29 111
Msa1302600 AT2G29370.1 30.435 253 162 6 4 246 12 260 9.03e-28 107
Msa1302600 AT2G29290.2 31.621 253 158 7 5 246 3 251 1.15e-27 107
Msa1302600 AT2G29330.1 32.016 253 157 7 5 246 3 251 1.38e-26 104
Msa1302600 AT3G26760.1 30.502 259 160 8 5 246 34 289 8.92e-26 102
Msa1302600 AT2G29350.1 32.400 250 147 8 9 245 17 257 5.88e-25 100
Msa1302600 AT2G30670.1 30.588 255 158 7 5 246 3 251 1.44e-24 99.0
Msa1302600 AT2G29300.1 30.078 256 159 8 5 246 3 252 1.87e-24 98.6
Msa1302600 AT2G29300.2 29.845 258 161 8 3 246 1 252 3.52e-24 98.2
Msa1302600 AT1G07440.1 30.081 246 164 5 7 246 12 255 9.16e-24 96.7
Msa1302600 AT2G29320.1 30.159 252 158 7 7 246 13 258 4.96e-23 95.1
Msa1302600 AT3G04000.1 29.057 265 159 7 4 245 11 269 1.66e-22 93.6
Msa1302600 AT2G29290.1 30.303 231 148 6 25 246 8 234 1.77e-22 92.8
Msa1302600 AT1G07450.1 30.078 256 164 8 1 246 1 251 3.66e-22 92.4
Msa1302600 AT5G18210.1 32.800 250 152 9 9 244 10 257 4.13e-22 92.4
Msa1302600 AT1G54870.1 27.273 253 168 6 6 245 81 330 1.20e-21 92.4
Msa1302600 AT1G54870.2 27.273 253 168 6 6 245 83 332 1.49e-21 92.0
Msa1302600 AT2G47130.1 32.669 251 153 7 6 245 5 250 2.70e-21 90.1
Msa1302600 AT2G29310.1 29.249 253 164 6 5 246 3 251 5.68e-21 89.4
Msa1302600 AT2G47120.2 30.303 264 153 11 6 249 6 258 2.13e-20 87.8
Msa1302600 AT4G13180.1 31.200 250 157 8 9 246 15 261 2.38e-20 87.4
Msa1302600 AT2G47120.1 30.303 264 153 11 6 249 5 257 2.68e-20 87.4
Msa1302600 AT3G51680.1 30.403 273 157 10 4 248 29 296 5.71e-20 87.4
Msa1302600 AT3G26770.1 29.183 257 164 9 5 246 39 292 6.83e-20 87.0
Msa1302600 AT3G03980.1 28.958 259 166 7 4 245 11 268 7.61e-20 86.3
Msa1302600 AT2G29350.3 31.858 226 132 8 33 245 3 219 3.49e-19 84.0
Msa1302600 AT3G47350.2 29.048 210 131 6 9 202 46 253 5.68e-19 84.7
Msa1302600 AT1G24360.1 29.457 258 160 10 2 246 69 317 6.78e-19 84.7
Msa1302600 AT3G47350.1 29.048 210 131 6 9 202 46 253 7.60e-19 84.3
Msa1302600 AT3G29260.1 30.709 254 156 8 5 245 4 250 1.77e-18 82.4
Msa1302600 AT1G63380.1 30.534 262 149 11 7 245 17 268 1.84e-18 82.8
Msa1302600 AT1G63380.3 30.534 262 149 11 7 245 15 266 2.03e-18 82.8
Msa1302600 AT1G63380.4 30.534 262 149 11 7 245 19 270 2.12e-18 82.8
Msa1302600 AT1G63380.2 30.534 262 149 11 7 245 22 273 2.27e-18 82.8
Msa1302600 AT2G47140.1 30.233 258 153 8 5 245 4 251 2.89e-18 81.6
Msa1302600 AT3G42960.1 30.916 262 158 9 5 248 6 262 3.13e-18 82.0
Msa1302600 AT4G03140.1 26.172 256 172 8 5 246 76 328 4.09e-18 82.8
Msa1302600 AT3G29250.2 32.558 258 149 12 6 247 5 253 4.31e-18 81.3
Msa1302600 AT2G29320.2 29.237 236 149 7 23 246 11 240 4.74e-18 81.3
Msa1302600 AT1G52340.1 29.562 274 146 11 5 246 16 274 5.70e-18 81.6
Msa1302600 AT5G18210.2 32.627 236 143 9 9 230 10 243 7.82e-18 80.9
Msa1302600 AT3G29250.3 31.890 254 154 10 6 246 41 288 8.07e-18 81.3
Msa1302600 AT1G62610.1 30.268 261 151 11 7 245 14 265 2.70e-17 79.3
Msa1302600 AT1G62610.3 30.268 261 151 11 7 245 15 266 3.11e-17 79.3
Msa1302600 AT1G62610.2 30.268 261 151 11 7 245 13 264 3.16e-17 79.3
Msa1302600 AT1G62610.4 30.268 261 151 11 7 245 19 270 3.58e-17 79.3
Msa1302600 AT3G55290.2 28.794 257 161 9 6 245 16 267 3.97e-17 79.0
Msa1302600 AT3G55290.1 28.794 257 161 9 6 245 17 268 4.58e-17 79.0
Msa1302600 AT3G29250.1 31.873 251 152 10 9 246 46 290 6.65e-17 78.6
Msa1302600 AT3G12800.1 29.502 261 161 7 4 246 7 262 9.23e-17 78.2
Msa1302600 AT2G29340.3 30.769 195 126 5 3 189 1 194 1.02e-16 76.6
Msa1302600 AT2G29340.4 30.769 195 126 5 3 189 1 194 1.02e-16 76.6
Msa1302600 AT3G47360.1 29.947 187 123 5 10 190 48 232 5.39e-16 76.3
Msa1302600 AT3G46170.1 29.119 261 155 11 6 245 25 276 7.21e-16 75.9
Msa1302600 AT2G29310.2 27.897 233 155 5 23 246 21 249 9.93e-16 75.1
Msa1302600 AT3G55310.1 28.195 266 161 10 1 245 11 267 1.32e-15 74.7
Msa1302600 AT2G17845.1 26.692 266 156 10 7 245 47 300 1.56e-15 75.1
Msa1302600 AT2G29350.2 31.053 190 118 6 9 189 17 202 5.05e-15 72.4
Msa1302600 AT5G50700.1 27.128 188 123 6 9 187 47 229 6.79e-14 70.9
Msa1302600 AT5G50600.1 27.128 188 123 6 9 187 47 229 6.79e-14 70.9
Msa1302600 AT5G50590.2 27.513 189 129 5 5 187 43 229 6.73e-13 67.0
Msa1302600 AT5G50690.2 27.513 189 129 5 5 187 43 229 6.73e-13 67.0
Msa1302600 AT5G50590.1 27.513 189 129 5 5 187 43 229 1.93e-12 66.2
Msa1302600 AT5G50690.1 27.513 189 129 5 5 187 43 229 1.93e-12 66.2
Msa1302600 AT3G03330.1 28.125 192 128 5 8 189 42 233 6.04e-12 65.1
Msa1302600 AT2G29320.3 28.718 195 121 7 7 189 13 201 3.52e-11 61.2

Find 76 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATTTCGCCATTACATTT+TGG 0.160200 8_3:+65176850 None:intergenic
CCAAAATGTAATGGCGAAAT+TGG 0.222003 8_3:-65176850 Msa1302600:three_prime_UTR
ACCTTTCCTTTGAATCTCTT+TGG 0.229084 8_3:+65178733 None:intergenic
TTTGGCTTGTTACAGAAGTA+TGG 0.300714 8_3:-65177954 Msa1302600:intron
GAAGAACCCTTCGGCAAGTA+TGG 0.332535 8_3:+65177644 None:intergenic
AAGGCCAAGAAGGGCTGTTT+TGG 0.335058 8_3:+65177556 None:intergenic
ATTCGGTCCTTGACAAGTTA+TGG 0.346257 8_3:-65177863 Msa1302600:CDS
AGCATACTAGAAGATGAAAA+TGG 0.360632 8_3:+65176888 None:intergenic
GTAACCAAAACAGCCCTTCT+TGG 0.370781 8_3:-65177560 Msa1302600:CDS
GGATTCGAGAAGGTAGAAAA+TGG 0.371650 8_3:-65178761 Msa1302600:exon
CGCTGTAGTTATGAAATGAT+AGG 0.372713 8_3:-65176765 Msa1302600:three_prime_UTR
ACTTGTCAAGGACCGAATCT+TGG 0.376699 8_3:+65177868 None:intergenic
ATCTTCTAGTATGCTTCCGT+TGG 0.377400 8_3:-65176880 Msa1302600:three_prime_UTR
CTTGAAGCAAAGACATTACT+TGG 0.379309 8_3:-65177032 Msa1302600:CDS
TTATCACCCACCAGCTAGTA+TGG 0.380678 8_3:-65177594 Msa1302600:CDS
ACTCACCATAGCAGAATTAC+TGG 0.391347 8_3:+65177338 None:intergenic
TGCAAATACATCAATTCCTT+TGG 0.391428 8_3:+65178402 None:intergenic
GGAGAAACTATAGTAGTTTC+CGG 0.394523 8_3:-65176936 Msa1302600:CDS
TTCGGTCCTTGACAAGTTAT+GGG 0.394972 8_3:-65177862 Msa1302600:CDS
ACTGCTTCAACACAGGGAAT+TGG 0.396053 8_3:-65178700 Msa1302600:CDS
CATTGCTGAGAGACTTGGTT+TGG 0.401132 8_3:-65178671 Msa1302600:CDS
GATGATGCGTCATATATAAC+AGG 0.401523 8_3:-65176957 Msa1302600:CDS
TAGGGGCCATCTCAGCAGCC+AGG 0.410588 8_3:+65177421 None:intergenic
CGAATCTTGGGTTTGCAGAA+TGG 0.413839 8_3:+65177881 None:intergenic
CTTGTCAAGGACCGAATCTT+GGG 0.415114 8_3:+65177869 None:intergenic
ACTTGGTTTGGAAGGTGCTT+CGG 0.430777 8_3:-65178659 Msa1302600:CDS
GTAGGCCCTGGCTGCTGAGA+TGG 0.440474 8_3:-65177427 Msa1302600:intron
TGTTATCTCTTCTCGCAGAC+AGG 0.446472 8_3:-65178635 Msa1302600:intron
AGAAGGATTTGCAGCAGCAT+TGG 0.451910 8_3:+65177911 None:intergenic
GATCGTGACTGCTTCAACAC+AGG 0.459705 8_3:-65178707 Msa1302600:CDS
CCAGCTAGTATGGCTATGTA+TGG 0.467840 8_3:-65177584 Msa1302600:CDS
GCTGTAGTTATGAAATGATA+GGG 0.469812 8_3:-65176764 Msa1302600:three_prime_UTR
TTTACCATTGCTGAGAGACT+TGG 0.472945 8_3:-65178676 Msa1302600:CDS
TACCTTCAGAAGAAGTATAG+TGG 0.476458 8_3:+65177824 None:intergenic
CGTGTAAACTGTGTTGCTCC+TGG 0.479482 8_3:-65177393 Msa1302600:CDS
CATTCTGCAAACCCAAGATT+CGG 0.481732 8_3:-65177880 Msa1302600:CDS
CACAGCCACACGCTTAGGTT+CGG 0.490961 8_3:+65178786 None:intergenic
AGGGGCCATCTCAGCAGCCA+GGG 0.499508 8_3:+65177422 None:intergenic
GTTATCATTTCATCGATCGC+TGG 0.504376 8_3:-65177617 Msa1302600:CDS
CGACTTTGGTAAGGCCAAGA+AGG 0.505337 8_3:+65177546 None:intergenic
ATGAATGAAGCAAAATTAGT+TGG 0.506154 8_3:+65177363 None:intergenic
CTCAAATGCTCTACAAAGGA+AGG 0.512057 8_3:-65178365 Msa1302600:CDS
ACCTAAGCGTGTGGCTGTGT+CGG 0.518751 8_3:-65178782 Msa1302600:five_prime_UTR
GAAATTCCAAAGAGATTCAA+AGG 0.522716 8_3:-65178739 Msa1302600:CDS
TCCGACACAGCCACACGCTT+AGG 0.533078 8_3:+65178781 None:intergenic
TCTTCTAGTATGCTTCCGTT+GGG 0.539298 8_3:-65176879 Msa1302600:three_prime_UTR
TAAGAATAATAGCATTGAGC+TGG 0.540343 8_3:-65176792 Msa1302600:three_prime_UTR
AAGACATTACTTGGAAGACT+TGG 0.543455 8_3:-65177023 Msa1302600:CDS
TTTGTAGAGCATTTGAGACA+TGG 0.550170 8_3:+65178371 None:intergenic
TCCAAAGAGATTCAAAGGAA+AGG 0.550796 8_3:-65178734 Msa1302600:CDS
GGCAAGTACCGACTTTGGTA+AGG 0.550957 8_3:+65177537 None:intergenic
CATCACCAGTAATTCTGCTA+TGG 0.551246 8_3:-65177343 Msa1302600:intron
GACTTTGGTAAGGCCAAGAA+GGG 0.555272 8_3:+65177547 None:intergenic
GGGTCTAGTCCAAAATGTAA+TGG 0.560206 8_3:-65176859 Msa1302600:three_prime_UTR
GCTGAGAGACTTGGTTTGGA+AGG 0.565863 8_3:-65178667 Msa1302600:CDS
TTATCTCCCATAACTTGTCA+AGG 0.576972 8_3:+65177856 None:intergenic
TGCAGAATGGAATCAACAGA+AGG 0.579952 8_3:+65177894 None:intergenic
CCATACATAGCCATACTAGC+TGG 0.584897 8_3:+65177584 None:intergenic
TGCAGCTCCATACTTGCCGA+AGG 0.587100 8_3:-65177651 Msa1302600:CDS
ATCGTGACTGCTTCAACACA+GGG 0.594859 8_3:-65178706 Msa1302600:CDS
AGCCACTATACTTCTTCTGA+AGG 0.599186 8_3:-65177826 Msa1302600:intron
TACATAGCCATACTAGCTGG+TGG 0.601638 8_3:+65177587 None:intergenic
CAGTCTCGATGGCATTCCGC+CGG 0.603575 8_3:+65176917 None:intergenic
TGGCTGTGTCGGATTCGAGA+AGG 0.603576 8_3:-65178771 Msa1302600:five_prime_UTR
AAATTAGTTGGTACAAAACC+AGG 0.611900 8_3:+65177375 None:intergenic
ATAACAACAGAAGAACCCTT+CGG 0.615477 8_3:+65177635 None:intergenic
CAAACCAAGTCTCTCAGCAA+TGG 0.620172 8_3:+65178672 None:intergenic
AATGGAAGCTACAGTCTCGA+TGG 0.627135 8_3:+65176906 None:intergenic
ACTTGGTACAACTGATGACA+TGG 0.632747 8_3:-65177006 Msa1302600:CDS
ATGTCTCAAATGCTCTACAA+AGG 0.639990 8_3:-65178369 Msa1302600:CDS
ACATAGCCATACTAGCTGGT+GGG 0.645983 8_3:+65177588 None:intergenic
GACAACCGAACCTAAGCGTG+TGG 0.646777 8_3:-65178791 Msa1302600:five_prime_UTR
CTGTAGTTATGAAATGATAG+GGG 0.658489 8_3:-65176763 Msa1302600:three_prime_UTR
GCAGCTCCATACTTGCCGAA+GGG 0.672297 8_3:-65177650 Msa1302600:CDS
GAAACTATAGTAGTTTCCGG+CGG 0.735826 8_3:-65176933 Msa1302600:CDS
CTTGGTACAACTGATGACAT+GGG 0.753367 8_3:-65177005 Msa1302600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+TGG + chr8_3:65177815-65177834 None:intergenic 0.0%
!! ATATATATATATATATATAT+TGG + chr8_3:65177815-65177834 None:intergenic 0.0%
!!! TCCATATTATTTTTTTAATT+TGG - chr8_3:65177094-65177113 Msa1302600:intron 10.0%
!! ACCAAATTAAAAAAATAATA+TGG + chr8_3:65177098-65177117 None:intergenic 10.0%
!!! TCCATATTATTTTTTTAATT+TGG - chr8_3:65177094-65177113 Msa1302600:intron 10.0%
!! ACCAAATTAAAAAAATAATA+TGG + chr8_3:65177098-65177117 None:intergenic 10.0%
!!! TATTTTTAGACATATCATTA+TGG + chr8_3:65176665-65176684 None:intergenic 15.0%
!!! AATATGTGTTTGAATTTTTT+TGG - chr8_3:65177595-65177614 Msa1302600:CDS 15.0%
!! ATTATGTAAATATAATGTGT+AGG - chr8_3:65178122-65178141 Msa1302600:intron 15.0%
!!! TATTTTTAGACATATCATTA+TGG + chr8_3:65176665-65176684 None:intergenic 15.0%
!!! AATATGTGTTTGAATTTTTT+TGG - chr8_3:65177595-65177614 Msa1302600:CDS 15.0%
!! ATTATGTAAATATAATGTGT+AGG - chr8_3:65178122-65178141 Msa1302600:intron 15.0%
!! GAATGAATCAAATAAGAAAA+AGG + chr8_3:65176965-65176984 None:intergenic 20.0%
!! GTAAATTATTGTATGAGAAT+TGG - chr8_3:65177009-65177028 Msa1302600:CDS 20.0%
!! TTGTACAAAATATGAATGAT+GGG + chr8_3:65177454-65177473 None:intergenic 20.0%
!! TGTACAAGTTTAAATAGAAT+TGG - chr8_3:65177467-65177486 Msa1302600:intron 20.0%
!!! ATGTTTTGTCATTATGATTT+TGG - chr8_3:65177498-65177517 Msa1302600:intron 20.0%
!! AAAAACAGTAACAATTCATA+TGG + chr8_3:65178078-65178097 None:intergenic 20.0%
!! GAATGAATCAAATAAGAAAA+AGG + chr8_3:65176965-65176984 None:intergenic 20.0%
!! GTAAATTATTGTATGAGAAT+TGG - chr8_3:65177009-65177028 Msa1302600:CDS 20.0%
!! TTGTACAAAATATGAATGAT+GGG + chr8_3:65177454-65177473 None:intergenic 20.0%
!! TGTACAAGTTTAAATAGAAT+TGG - chr8_3:65177467-65177486 Msa1302600:intron 20.0%
!!! ATGTTTTGTCATTATGATTT+TGG - chr8_3:65177498-65177517 Msa1302600:intron 20.0%
!! AAAAACAGTAACAATTCATA+TGG + chr8_3:65178078-65178097 None:intergenic 20.0%
! CATATAGGATAGTTGTAAAA+TGG + chr8_3:65177354-65177373 None:intergenic 25.0%
! TAAGACATCAAATCTCATAT+AGG + chr8_3:65177369-65177388 None:intergenic 25.0%
! CTTGTACAAAATATGAATGA+TGG + chr8_3:65177455-65177474 None:intergenic 25.0%
! ACAAGTTTAAATAGAATTGG+CGG - chr8_3:65177470-65177489 Msa1302600:intron 25.0%
! ATGAATGAAGCAAAATTAGT+TGG + chr8_3:65178207-65178226 None:intergenic 25.0%
!! GAGTATCTTTTTAACCAAAT+AGG - chr8_3:65178248-65178267 Msa1302600:intron 25.0%
! ATATATCATTTGTGTCTGAA+TGG - chr8_3:65178480-65178499 Msa1302600:intron 25.0%
! CATATAGGATAGTTGTAAAA+TGG + chr8_3:65177354-65177373 None:intergenic 25.0%
! TAAGACATCAAATCTCATAT+AGG + chr8_3:65177369-65177388 None:intergenic 25.0%
! CTTGTACAAAATATGAATGA+TGG + chr8_3:65177455-65177474 None:intergenic 25.0%
! ACAAGTTTAAATAGAATTGG+CGG - chr8_3:65177470-65177489 Msa1302600:intron 25.0%
! ATGAATGAAGCAAAATTAGT+TGG + chr8_3:65178207-65178226 None:intergenic 25.0%
!! GAGTATCTTTTTAACCAAAT+AGG - chr8_3:65178248-65178267 Msa1302600:intron 25.0%
! ATATATCATTTGTGTCTGAA+TGG - chr8_3:65178480-65178499 Msa1302600:intron 25.0%
GAAATTCCAAAGAGATTCAA+AGG - chr8_3:65176828-65176847 Msa1302600:three_prime_UTR 30.0%
TGCAAATACATCAATTCCTT+TGG + chr8_3:65177168-65177187 None:intergenic 30.0%
! CACAAGTCTTGTATTGAAAT+TGG + chr8_3:65177287-65177306 None:intergenic 30.0%
!!! TGTCATTATGATTTTGGCTT+TGG - chr8_3:65177504-65177523 Msa1302600:intron 30.0%
TGTCTTTCTCACTATTTGAA+TGG - chr8_3:65177566-65177585 Msa1302600:CDS 30.0%
AGGTAATTAAGCTGTGAAAA+TGG - chr8_3:65177761-65177780 Msa1302600:intron 30.0%
! AGTGTGTTGATGTAGTAAAA+TGG - chr8_3:65177871-65177890 Msa1302600:CDS 30.0%
ATATTGAAGGAACAATTGGA+AGG + chr8_3:65178054-65178073 None:intergenic 30.0%
CAATTCATATGGCATATTGA+AGG + chr8_3:65178067-65178086 None:intergenic 30.0%
! AAATTAGTTGGTACAAAACC+AGG + chr8_3:65178195-65178214 None:intergenic 30.0%
AGCATACTAGAAGATGAAAA+TGG + chr8_3:65178682-65178701 None:intergenic 30.0%
! TAAGAATAATAGCATTGAGC+TGG - chr8_3:65178775-65178794 Msa1302600:five_prime_UTR 30.0%
GCTGTAGTTATGAAATGATA+GGG - chr8_3:65178803-65178822 Msa1302600:five_prime_UTR 30.0%
CTGTAGTTATGAAATGATAG+GGG - chr8_3:65178804-65178823 Msa1302600:five_prime_UTR 30.0%
GAAATTCCAAAGAGATTCAA+AGG - chr8_3:65176828-65176847 Msa1302600:three_prime_UTR 30.0%
TGCAAATACATCAATTCCTT+TGG + chr8_3:65177168-65177187 None:intergenic 30.0%
! CACAAGTCTTGTATTGAAAT+TGG + chr8_3:65177287-65177306 None:intergenic 30.0%
!!! TGTCATTATGATTTTGGCTT+TGG - chr8_3:65177504-65177523 Msa1302600:intron 30.0%
TGTCTTTCTCACTATTTGAA+TGG - chr8_3:65177566-65177585 Msa1302600:CDS 30.0%
AGGTAATTAAGCTGTGAAAA+TGG - chr8_3:65177761-65177780 Msa1302600:intron 30.0%
! AGTGTGTTGATGTAGTAAAA+TGG - chr8_3:65177871-65177890 Msa1302600:CDS 30.0%
ATATTGAAGGAACAATTGGA+AGG + chr8_3:65178054-65178073 None:intergenic 30.0%
CAATTCATATGGCATATTGA+AGG + chr8_3:65178067-65178086 None:intergenic 30.0%
! AAATTAGTTGGTACAAAACC+AGG + chr8_3:65178195-65178214 None:intergenic 30.0%
AGCATACTAGAAGATGAAAA+TGG + chr8_3:65178682-65178701 None:intergenic 30.0%
! TAAGAATAATAGCATTGAGC+TGG - chr8_3:65178775-65178794 Msa1302600:five_prime_UTR 30.0%
GCTGTAGTTATGAAATGATA+GGG - chr8_3:65178803-65178822 Msa1302600:five_prime_UTR 30.0%
CTGTAGTTATGAAATGATAG+GGG - chr8_3:65178804-65178823 Msa1302600:five_prime_UTR 30.0%
!! CTCTGAAACTGAGAAAAACA+AGG + chr8_3:65176757-65176776 None:intergenic 35.0%
TCCAAAGAGATTCAAAGGAA+AGG - chr8_3:65176833-65176852 Msa1302600:three_prime_UTR 35.0%
ACCTTTCCTTTGAATCTCTT+TGG + chr8_3:65176837-65176856 None:intergenic 35.0%
! TTTGTAGAGCATTTGAGACA+TGG + chr8_3:65177199-65177218 None:intergenic 35.0%
ATGTCTCAAATGCTCTACAA+AGG - chr8_3:65177198-65177217 Msa1302600:intron 35.0%
TTTGATTGACAAAACTGTCC+AGG - chr8_3:65177226-65177245 Msa1302600:intron 35.0%
TGAGATTTGATGTCTTATCC+AGG - chr8_3:65177372-65177391 Msa1302600:CDS 35.0%
CTGGACAGTATGTATGTTAT+TGG - chr8_3:65177418-65177437 Msa1302600:CDS 35.0%
!! TTTGGCTTGTTACAGAAGTA+TGG - chr8_3:65177613-65177632 Msa1302600:CDS 35.0%
! TTATCTCCCATAACTTGTCA+AGG + chr8_3:65177714-65177733 None:intergenic 35.0%
! TACCTTCAGAAGAAGTATAG+TGG + chr8_3:65177746-65177765 None:intergenic 35.0%
CTACACAAAGATGGAAGAAA+GGG + chr8_3:65177853-65177872 None:intergenic 35.0%
ACTACACAAAGATGGAAGAA+AGG + chr8_3:65177854-65177873 None:intergenic 35.0%
ATCAACACACTACACAAAGA+TGG + chr8_3:65177862-65177881 None:intergenic 35.0%
GGTGTCTGATAATTATACAC+AGG - chr8_3:65177892-65177911 Msa1302600:CDS 35.0%
ATAACAACAGAAGAACCCTT+CGG + chr8_3:65177935-65177954 None:intergenic 35.0%
TGGCATATTGAAGGAACAAT+TGG + chr8_3:65178058-65178077 None:intergenic 35.0%
TAAATATAATGTGTAGGCCC+TGG - chr8_3:65178128-65178147 Msa1302600:intron 35.0%
!! ACAGTTTACACGAGTTTTAG+GGG + chr8_3:65178166-65178185 None:intergenic 35.0%
! CACAGTTTACACGAGTTTTA+GGG + chr8_3:65178167-65178186 None:intergenic 35.0%
! ACACAGTTTACACGAGTTTT+AGG + chr8_3:65178168-65178187 None:intergenic 35.0%
GGAAAGAGGAAAAACCTATT+TGG + chr8_3:65178265-65178284 None:intergenic 35.0%
TAGCAAATGATACACAACAC+AGG + chr8_3:65178296-65178315 None:intergenic 35.0%
! CTTTCAATCTAAAGTGTCAG+TGG + chr8_3:65178326-65178345 None:intergenic 35.0%
CATTATCTTTGTCTACGTGT+TGG - chr8_3:65178427-65178446 Msa1302600:CDS 35.0%
!! GATATATGAAGCACTGATAC+TGG + chr8_3:65178467-65178486 None:intergenic 35.0%
!! TTGTGTCTGAATGGATTTTG+TGG - chr8_3:65178489-65178508 Msa1302600:intron 35.0%
CTTGAAGCAAAGACATTACT+TGG - chr8_3:65178535-65178554 Msa1302600:intron 35.0%
AAGACATTACTTGGAAGACT+TGG - chr8_3:65178544-65178563 Msa1302600:intron 35.0%
GATGATGCGTCATATATAAC+AGG - chr8_3:65178610-65178629 Msa1302600:intron 35.0%
GGAGAAACTATAGTAGTTTC+CGG - chr8_3:65178631-65178650 Msa1302600:intron 35.0%
! CCAATTTCGCCATTACATTT+TGG + chr8_3:65178720-65178739 None:intergenic 35.0%
CCAAAATGTAATGGCGAAAT+TGG - chr8_3:65178717-65178736 Msa1302600:CDS 35.0%
CGCTGTAGTTATGAAATGAT+AGG - chr8_3:65178802-65178821 Msa1302600:five_prime_UTR 35.0%
!!! ATAGGGGATGTTGCTTTTTA+AGG - chr8_3:65178820-65178839 Msa1302600:five_prime_UTR 35.0%
!!! TAGGGGATGTTGCTTTTTAA+GGG - chr8_3:65178821-65178840 Msa1302600:five_prime_UTR 35.0%
!! CTCTGAAACTGAGAAAAACA+AGG + chr8_3:65176757-65176776 None:intergenic 35.0%
TCCAAAGAGATTCAAAGGAA+AGG - chr8_3:65176833-65176852 Msa1302600:three_prime_UTR 35.0%
ACCTTTCCTTTGAATCTCTT+TGG + chr8_3:65176837-65176856 None:intergenic 35.0%
! TTTGTAGAGCATTTGAGACA+TGG + chr8_3:65177199-65177218 None:intergenic 35.0%
ATGTCTCAAATGCTCTACAA+AGG - chr8_3:65177198-65177217 Msa1302600:intron 35.0%
TTTGATTGACAAAACTGTCC+AGG - chr8_3:65177226-65177245 Msa1302600:intron 35.0%
TGAGATTTGATGTCTTATCC+AGG - chr8_3:65177372-65177391 Msa1302600:CDS 35.0%
CTGGACAGTATGTATGTTAT+TGG - chr8_3:65177418-65177437 Msa1302600:CDS 35.0%
!! TTTGGCTTGTTACAGAAGTA+TGG - chr8_3:65177613-65177632 Msa1302600:CDS 35.0%
! TTATCTCCCATAACTTGTCA+AGG + chr8_3:65177714-65177733 None:intergenic 35.0%
! TACCTTCAGAAGAAGTATAG+TGG + chr8_3:65177746-65177765 None:intergenic 35.0%
CTACACAAAGATGGAAGAAA+GGG + chr8_3:65177853-65177872 None:intergenic 35.0%
ACTACACAAAGATGGAAGAA+AGG + chr8_3:65177854-65177873 None:intergenic 35.0%
ATCAACACACTACACAAAGA+TGG + chr8_3:65177862-65177881 None:intergenic 35.0%
GGTGTCTGATAATTATACAC+AGG - chr8_3:65177892-65177911 Msa1302600:CDS 35.0%
ATAACAACAGAAGAACCCTT+CGG + chr8_3:65177935-65177954 None:intergenic 35.0%
TGGCATATTGAAGGAACAAT+TGG + chr8_3:65178058-65178077 None:intergenic 35.0%
TAAATATAATGTGTAGGCCC+TGG - chr8_3:65178128-65178147 Msa1302600:intron 35.0%
!! ACAGTTTACACGAGTTTTAG+GGG + chr8_3:65178166-65178185 None:intergenic 35.0%
! CACAGTTTACACGAGTTTTA+GGG + chr8_3:65178167-65178186 None:intergenic 35.0%
! ACACAGTTTACACGAGTTTT+AGG + chr8_3:65178168-65178187 None:intergenic 35.0%
GGAAAGAGGAAAAACCTATT+TGG + chr8_3:65178265-65178284 None:intergenic 35.0%
TAGCAAATGATACACAACAC+AGG + chr8_3:65178296-65178315 None:intergenic 35.0%
! CTTTCAATCTAAAGTGTCAG+TGG + chr8_3:65178326-65178345 None:intergenic 35.0%
CATTATCTTTGTCTACGTGT+TGG - chr8_3:65178427-65178446 Msa1302600:CDS 35.0%
!! GATATATGAAGCACTGATAC+TGG + chr8_3:65178467-65178486 None:intergenic 35.0%
!! TTGTGTCTGAATGGATTTTG+TGG - chr8_3:65178489-65178508 Msa1302600:intron 35.0%
CTTGAAGCAAAGACATTACT+TGG - chr8_3:65178535-65178554 Msa1302600:intron 35.0%
AAGACATTACTTGGAAGACT+TGG - chr8_3:65178544-65178563 Msa1302600:intron 35.0%
GATGATGCGTCATATATAAC+AGG - chr8_3:65178610-65178629 Msa1302600:intron 35.0%
GGAGAAACTATAGTAGTTTC+CGG - chr8_3:65178631-65178650 Msa1302600:intron 35.0%
! CCAATTTCGCCATTACATTT+TGG + chr8_3:65178720-65178739 None:intergenic 35.0%
CCAAAATGTAATGGCGAAAT+TGG - chr8_3:65178717-65178736 Msa1302600:CDS 35.0%
CGCTGTAGTTATGAAATGAT+AGG - chr8_3:65178802-65178821 Msa1302600:five_prime_UTR 35.0%
!!! ATAGGGGATGTTGCTTTTTA+AGG - chr8_3:65178820-65178839 Msa1302600:five_prime_UTR 35.0%
!!! TAGGGGATGTTGCTTTTTAA+GGG - chr8_3:65178821-65178840 Msa1302600:five_prime_UTR 35.0%
GGATTCGAGAAGGTAGAAAA+TGG - chr8_3:65176806-65176825 Msa1302600:three_prime_UTR 40.0%
TTTACCATTGCTGAGAGACT+TGG - chr8_3:65176891-65176910 Msa1302600:three_prime_UTR 40.0%
ATGTAGCTGCTGAAAAACTG+AGG - chr8_3:65177141-65177160 Msa1302600:intron 40.0%
TGTAGCTGCTGAAAAACTGA+GGG - chr8_3:65177142-65177161 Msa1302600:intron 40.0%
CTCAAATGCTCTACAAAGGA+AGG - chr8_3:65177202-65177221 Msa1302600:intron 40.0%
AGAGAAGATGAATTCACACC+TGG + chr8_3:65177247-65177266 None:intergenic 40.0%
! TGGTCATTAGTGTTACTGCT+AGG + chr8_3:65177334-65177353 None:intergenic 40.0%
TAACATACATACTGTCCAGC+TGG + chr8_3:65177417-65177436 None:intergenic 40.0%
TGCAGAATGGAATCAACAGA+AGG + chr8_3:65177676-65177695 None:intergenic 40.0%
CATTCTGCAAACCCAAGATT+CGG - chr8_3:65177687-65177706 Msa1302600:intron 40.0%
ATTCGGTCCTTGACAAGTTA+TGG - chr8_3:65177704-65177723 Msa1302600:intron 40.0%
TTCGGTCCTTGACAAGTTAT+GGG - chr8_3:65177705-65177724 Msa1302600:intron 40.0%
AGCCACTATACTTCTTCTGA+AGG - chr8_3:65177741-65177760 Msa1302600:intron 40.0%
GTTATCATTTCATCGATCGC+TGG - chr8_3:65177950-65177969 Msa1302600:intron 40.0%
CATCACCAGTAATTCTGCTA+TGG - chr8_3:65178224-65178243 Msa1302600:intron 40.0%
ACTCACCATAGCAGAATTAC+TGG + chr8_3:65178232-65178251 None:intergenic 40.0%
ACTTGGTACAACTGATGACA+TGG - chr8_3:65178561-65178580 Msa1302600:intron 40.0%
CTTGGTACAACTGATGACAT+GGG - chr8_3:65178562-65178581 Msa1302600:intron 40.0%
GAAACTATAGTAGTTTCCGG+CGG - chr8_3:65178634-65178653 Msa1302600:intron 40.0%
ATCTTCTAGTATGCTTCCGT+TGG - chr8_3:65178687-65178706 Msa1302600:CDS 40.0%
TCTTCTAGTATGCTTCCGTT+GGG - chr8_3:65178688-65178707 Msa1302600:CDS 40.0%
!! ACATTTTGGACTAGACCCAA+CGG + chr8_3:65178706-65178725 None:intergenic 40.0%
GGGTCTAGTCCAAAATGTAA+TGG - chr8_3:65178708-65178727 Msa1302600:CDS 40.0%
!!! AGGGGATGTTGCTTTTTAAG+GGG - chr8_3:65178822-65178841 Msa1302600:five_prime_UTR 40.0%
GGATTCGAGAAGGTAGAAAA+TGG - chr8_3:65176806-65176825 Msa1302600:three_prime_UTR 40.0%
TTTACCATTGCTGAGAGACT+TGG - chr8_3:65176891-65176910 Msa1302600:three_prime_UTR 40.0%
ATGTAGCTGCTGAAAAACTG+AGG - chr8_3:65177141-65177160 Msa1302600:intron 40.0%
TGTAGCTGCTGAAAAACTGA+GGG - chr8_3:65177142-65177161 Msa1302600:intron 40.0%
CTCAAATGCTCTACAAAGGA+AGG - chr8_3:65177202-65177221 Msa1302600:intron 40.0%
AGAGAAGATGAATTCACACC+TGG + chr8_3:65177247-65177266 None:intergenic 40.0%
! TGGTCATTAGTGTTACTGCT+AGG + chr8_3:65177334-65177353 None:intergenic 40.0%
TAACATACATACTGTCCAGC+TGG + chr8_3:65177417-65177436 None:intergenic 40.0%
TGCAGAATGGAATCAACAGA+AGG + chr8_3:65177676-65177695 None:intergenic 40.0%
CATTCTGCAAACCCAAGATT+CGG - chr8_3:65177687-65177706 Msa1302600:intron 40.0%
ATTCGGTCCTTGACAAGTTA+TGG - chr8_3:65177704-65177723 Msa1302600:intron 40.0%
TTCGGTCCTTGACAAGTTAT+GGG - chr8_3:65177705-65177724 Msa1302600:intron 40.0%
AGCCACTATACTTCTTCTGA+AGG - chr8_3:65177741-65177760 Msa1302600:intron 40.0%
GTTATCATTTCATCGATCGC+TGG - chr8_3:65177950-65177969 Msa1302600:intron 40.0%
CATCACCAGTAATTCTGCTA+TGG - chr8_3:65178224-65178243 Msa1302600:intron 40.0%
ACTCACCATAGCAGAATTAC+TGG + chr8_3:65178232-65178251 None:intergenic 40.0%
ACTTGGTACAACTGATGACA+TGG - chr8_3:65178561-65178580 Msa1302600:intron 40.0%
CTTGGTACAACTGATGACAT+GGG - chr8_3:65178562-65178581 Msa1302600:intron 40.0%
GAAACTATAGTAGTTTCCGG+CGG - chr8_3:65178634-65178653 Msa1302600:intron 40.0%
ATCTTCTAGTATGCTTCCGT+TGG - chr8_3:65178687-65178706 Msa1302600:CDS 40.0%
TCTTCTAGTATGCTTCCGTT+GGG - chr8_3:65178688-65178707 Msa1302600:CDS 40.0%
!! ACATTTTGGACTAGACCCAA+CGG + chr8_3:65178706-65178725 None:intergenic 40.0%
GGGTCTAGTCCAAAATGTAA+TGG - chr8_3:65178708-65178727 Msa1302600:CDS 40.0%
!!! AGGGGATGTTGCTTTTTAAG+GGG - chr8_3:65178822-65178841 Msa1302600:five_prime_UTR 40.0%
ATCGTGACTGCTTCAACACA+GGG - chr8_3:65176861-65176880 Msa1302600:three_prime_UTR 45.0%
ACTGCTTCAACACAGGGAAT+TGG - chr8_3:65176867-65176886 Msa1302600:three_prime_UTR 45.0%
CAAACCAAGTCTCTCAGCAA+TGG + chr8_3:65176898-65176917 None:intergenic 45.0%
! CATTGCTGAGAGACTTGGTT+TGG - chr8_3:65176896-65176915 Msa1302600:exon 45.0%
!! ACTTGGTTTGGAAGGTGCTT+CGG - chr8_3:65176908-65176927 Msa1302600:exon 45.0%
TGTTATCTCTTCTCGCAGAC+AGG - chr8_3:65176932-65176951 Msa1302600:CDS 45.0%
! AAGAACTGGACTTGGTAACC+TGG + chr8_3:65177393-65177412 None:intergenic 45.0%
AGAAGGATTTGCAGCAGCAT+TGG + chr8_3:65177659-65177678 None:intergenic 45.0%
CGAATCTTGGGTTTGCAGAA+TGG + chr8_3:65177689-65177708 None:intergenic 45.0%
CTTGTCAAGGACCGAATCTT+GGG + chr8_3:65177701-65177720 None:intergenic 45.0%
ACTTGTCAAGGACCGAATCT+TGG + chr8_3:65177702-65177721 None:intergenic 45.0%
TTATCACCCACCAGCTAGTA+TGG - chr8_3:65177973-65177992 Msa1302600:intron 45.0%
ACATAGCCATACTAGCTGGT+GGG + chr8_3:65177982-65178001 None:intergenic 45.0%
TACATAGCCATACTAGCTGG+TGG + chr8_3:65177983-65178002 None:intergenic 45.0%
CCATACATAGCCATACTAGC+TGG + chr8_3:65177986-65178005 None:intergenic 45.0%
CCAGCTAGTATGGCTATGTA+TGG - chr8_3:65177983-65178002 Msa1302600:intron 45.0%
GTAACCAAAACAGCCCTTCT+TGG - chr8_3:65178007-65178026 Msa1302600:intron 45.0%
GACTTTGGTAAGGCCAAGAA+GGG + chr8_3:65178023-65178042 None:intergenic 45.0%
!! CTTCTTGGCCTTACCAAAGT+CGG - chr8_3:65178022-65178041 Msa1302600:intron 45.0%
TACACAACACAGGAGATTCG+AGG + chr8_3:65178286-65178305 None:intergenic 45.0%
AATGGAAGCTACAGTCTCGA+TGG + chr8_3:65178664-65178683 None:intergenic 45.0%
!!! GGGGATGTTGCTTTTTAAGG+GGG - chr8_3:65178823-65178842 Msa1302600:five_prime_UTR 45.0%
!!! GGGATGTTGCTTTTTAAGGG+GGG - chr8_3:65178824-65178843 Msa1302600:five_prime_UTR 45.0%
!!! GGATGTTGCTTTTTAAGGGG+GGG - chr8_3:65178825-65178844 Msa1302600:five_prime_UTR 45.0%
ATCGTGACTGCTTCAACACA+GGG - chr8_3:65176861-65176880 Msa1302600:three_prime_UTR 45.0%
ACTGCTTCAACACAGGGAAT+TGG - chr8_3:65176867-65176886 Msa1302600:three_prime_UTR 45.0%
CAAACCAAGTCTCTCAGCAA+TGG + chr8_3:65176898-65176917 None:intergenic 45.0%
! CATTGCTGAGAGACTTGGTT+TGG - chr8_3:65176896-65176915 Msa1302600:exon 45.0%
!! ACTTGGTTTGGAAGGTGCTT+CGG - chr8_3:65176908-65176927 Msa1302600:exon 45.0%
TGTTATCTCTTCTCGCAGAC+AGG - chr8_3:65176932-65176951 Msa1302600:CDS 45.0%
! AAGAACTGGACTTGGTAACC+TGG + chr8_3:65177393-65177412 None:intergenic 45.0%
AGAAGGATTTGCAGCAGCAT+TGG + chr8_3:65177659-65177678 None:intergenic 45.0%
CGAATCTTGGGTTTGCAGAA+TGG + chr8_3:65177689-65177708 None:intergenic 45.0%
CTTGTCAAGGACCGAATCTT+GGG + chr8_3:65177701-65177720 None:intergenic 45.0%
ACTTGTCAAGGACCGAATCT+TGG + chr8_3:65177702-65177721 None:intergenic 45.0%
TTATCACCCACCAGCTAGTA+TGG - chr8_3:65177973-65177992 Msa1302600:intron 45.0%
ACATAGCCATACTAGCTGGT+GGG + chr8_3:65177982-65178001 None:intergenic 45.0%
TACATAGCCATACTAGCTGG+TGG + chr8_3:65177983-65178002 None:intergenic 45.0%
CCATACATAGCCATACTAGC+TGG + chr8_3:65177986-65178005 None:intergenic 45.0%
CCAGCTAGTATGGCTATGTA+TGG - chr8_3:65177983-65178002 Msa1302600:intron 45.0%
GTAACCAAAACAGCCCTTCT+TGG - chr8_3:65178007-65178026 Msa1302600:intron 45.0%
GACTTTGGTAAGGCCAAGAA+GGG + chr8_3:65178023-65178042 None:intergenic 45.0%
!! CTTCTTGGCCTTACCAAAGT+CGG - chr8_3:65178022-65178041 Msa1302600:intron 45.0%
TACACAACACAGGAGATTCG+AGG + chr8_3:65178286-65178305 None:intergenic 45.0%
AATGGAAGCTACAGTCTCGA+TGG + chr8_3:65178664-65178683 None:intergenic 45.0%
!!! GGGGATGTTGCTTTTTAAGG+GGG - chr8_3:65178823-65178842 Msa1302600:five_prime_UTR 45.0%
!!! GGGATGTTGCTTTTTAAGGG+GGG - chr8_3:65178824-65178843 Msa1302600:five_prime_UTR 45.0%
!!! GGATGTTGCTTTTTAAGGGG+GGG - chr8_3:65178825-65178844 Msa1302600:five_prime_UTR 45.0%
GATCGTGACTGCTTCAACAC+AGG - chr8_3:65176860-65176879 Msa1302600:three_prime_UTR 50.0%
!! GCTGAGAGACTTGGTTTGGA+AGG - chr8_3:65176900-65176919 Msa1302600:exon 50.0%
GCTGAAAAACTGAGGGCCAA+AGG - chr8_3:65177149-65177168 Msa1302600:intron 50.0%
CAGCTGGTAAGAACTGGACT+TGG + chr8_3:65177401-65177420 None:intergenic 50.0%
CAAGTCCAGTTCTTACCAGC+TGG - chr8_3:65177399-65177418 Msa1302600:CDS 50.0%
ACTGTCCAGCTGGTAAGAAC+TGG + chr8_3:65177407-65177426 None:intergenic 50.0%
GAAGAACCCTTCGGCAAGTA+TGG + chr8_3:65177926-65177945 None:intergenic 50.0%
! AAGGCCAAGAAGGGCTGTTT+TGG + chr8_3:65178014-65178033 None:intergenic 50.0%
CGACTTTGGTAAGGCCAAGA+AGG + chr8_3:65178024-65178043 None:intergenic 50.0%
!! GGCAAGTACCGACTTTGGTA+AGG + chr8_3:65178033-65178052 None:intergenic 50.0%
!! TGGAAGGCAAGTACCGACTT+TGG + chr8_3:65178038-65178057 None:intergenic 50.0%
! CGTGTAAACTGTGTTGCTCC+TGG - chr8_3:65178174-65178193 Msa1302600:intron 50.0%
CACAGGAGATTCGAGGAAAG+AGG + chr8_3:65178279-65178298 None:intergenic 50.0%
!!! GGGTGCTGCTACAGCTTTTT+TGG - chr8_3:65178582-65178601 Msa1302600:intron 50.0%
GATCGTGACTGCTTCAACAC+AGG - chr8_3:65176860-65176879 Msa1302600:three_prime_UTR 50.0%
!! GCTGAGAGACTTGGTTTGGA+AGG - chr8_3:65176900-65176919 Msa1302600:exon 50.0%
GCTGAAAAACTGAGGGCCAA+AGG - chr8_3:65177149-65177168 Msa1302600:intron 50.0%
CAGCTGGTAAGAACTGGACT+TGG + chr8_3:65177401-65177420 None:intergenic 50.0%
CAAGTCCAGTTCTTACCAGC+TGG - chr8_3:65177399-65177418 Msa1302600:CDS 50.0%
ACTGTCCAGCTGGTAAGAAC+TGG + chr8_3:65177407-65177426 None:intergenic 50.0%
GAAGAACCCTTCGGCAAGTA+TGG + chr8_3:65177926-65177945 None:intergenic 50.0%
! AAGGCCAAGAAGGGCTGTTT+TGG + chr8_3:65178014-65178033 None:intergenic 50.0%
CGACTTTGGTAAGGCCAAGA+AGG + chr8_3:65178024-65178043 None:intergenic 50.0%
!! GGCAAGTACCGACTTTGGTA+AGG + chr8_3:65178033-65178052 None:intergenic 50.0%
!! TGGAAGGCAAGTACCGACTT+TGG + chr8_3:65178038-65178057 None:intergenic 50.0%
! CGTGTAAACTGTGTTGCTCC+TGG - chr8_3:65178174-65178193 Msa1302600:intron 50.0%
CACAGGAGATTCGAGGAAAG+AGG + chr8_3:65178279-65178298 None:intergenic 50.0%
!!! GGGTGCTGCTACAGCTTTTT+TGG - chr8_3:65178582-65178601 Msa1302600:intron 50.0%
GACAACCGAACCTAAGCGTG+TGG - chr8_3:65176776-65176795 Msa1302600:three_prime_UTR 55.0%
CACAGCCACACGCTTAGGTT+CGG + chr8_3:65176784-65176803 None:intergenic 55.0%
ACCTAAGCGTGTGGCTGTGT+CGG - chr8_3:65176785-65176804 Msa1302600:three_prime_UTR 55.0%
TGGCTGTGTCGGATTCGAGA+AGG - chr8_3:65176796-65176815 Msa1302600:three_prime_UTR 55.0%
TGCAGCTCCATACTTGCCGA+AGG - chr8_3:65177916-65177935 Msa1302600:CDS 55.0%
GCAGCTCCATACTTGCCGAA+GGG - chr8_3:65177917-65177936 Msa1302600:CDS 55.0%
GACAACCGAACCTAAGCGTG+TGG - chr8_3:65176776-65176795 Msa1302600:three_prime_UTR 55.0%
CACAGCCACACGCTTAGGTT+CGG + chr8_3:65176784-65176803 None:intergenic 55.0%
ACCTAAGCGTGTGGCTGTGT+CGG - chr8_3:65176785-65176804 Msa1302600:three_prime_UTR 55.0%
TGGCTGTGTCGGATTCGAGA+AGG - chr8_3:65176796-65176815 Msa1302600:three_prime_UTR 55.0%
TGCAGCTCCATACTTGCCGA+AGG - chr8_3:65177916-65177935 Msa1302600:CDS 55.0%
GCAGCTCCATACTTGCCGAA+GGG - chr8_3:65177917-65177936 Msa1302600:CDS 55.0%
TCCGACACAGCCACACGCTT+AGG + chr8_3:65176789-65176808 None:intergenic 60.0%
CAGTCTCGATGGCATTCCGC+CGG + chr8_3:65178653-65178672 None:intergenic 60.0%
TCCGACACAGCCACACGCTT+AGG + chr8_3:65176789-65176808 None:intergenic 60.0%
CAGTCTCGATGGCATTCCGC+CGG + chr8_3:65178653-65178672 None:intergenic 60.0%
GTAGGCCCTGGCTGCTGAGA+TGG - chr8_3:65178140-65178159 Msa1302600:intron 65.0%
AGGGGCCATCTCAGCAGCCA+GGG + chr8_3:65178148-65178167 None:intergenic 65.0%
TAGGGGCCATCTCAGCAGCC+AGG + chr8_3:65178149-65178168 None:intergenic 65.0%
GTAGGCCCTGGCTGCTGAGA+TGG - chr8_3:65178140-65178159 Msa1302600:intron 65.0%
AGGGGCCATCTCAGCAGCCA+GGG + chr8_3:65178148-65178167 None:intergenic 65.0%
TAGGGGCCATCTCAGCAGCC+AGG + chr8_3:65178149-65178168 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 65176662 65178927 65176662 ID=Msa1302600;Name=Msa1302600
chr8_3 mRNA 65176662 65178927 65176662 ID=Msa1302600-mRNA-1;Parent=Msa1302600;Name=Msa1302600-mRNA-1;_AED=0.01;_eAED=0.01;_QI=163|0.8|0.83|1|1|1|6|252|250
chr8_3 exon 65176662 65177063 65176662 ID=Msa1302600-mRNA-1:exon:19744;Parent=Msa1302600-mRNA-1
chr8_3 exon 65177344 65177445 65177344 ID=Msa1302600-mRNA-1:exon:19743;Parent=Msa1302600-mRNA-1
chr8_3 exon 65177550 65177675 65177550 ID=Msa1302600-mRNA-1:exon:19742;Parent=Msa1302600-mRNA-1
chr8_3 exon 65177827 65177961 65177827 ID=Msa1302600-mRNA-1:exon:19741;Parent=Msa1302600-mRNA-1
chr8_3 exon 65178348 65178458 65178348 ID=Msa1302600-mRNA-1:exon:19740;Parent=Msa1302600-mRNA-1
chr8_3 exon 65178636 65178927 65178636 ID=Msa1302600-mRNA-1:exon:19739;Parent=Msa1302600-mRNA-1
chr8_3 five_prime_UTR 65178765 65178927 65178765 ID=Msa1302600-mRNA-1:five_prime_utr;Parent=Msa1302600-mRNA-1
chr8_3 CDS 65178636 65178764 65178636 ID=Msa1302600-mRNA-1:cds;Parent=Msa1302600-mRNA-1
chr8_3 CDS 65178348 65178458 65178348 ID=Msa1302600-mRNA-1:cds;Parent=Msa1302600-mRNA-1
chr8_3 CDS 65177827 65177961 65177827 ID=Msa1302600-mRNA-1:cds;Parent=Msa1302600-mRNA-1
chr8_3 CDS 65177550 65177675 65177550 ID=Msa1302600-mRNA-1:cds;Parent=Msa1302600-mRNA-1
chr8_3 CDS 65177344 65177445 65177344 ID=Msa1302600-mRNA-1:cds;Parent=Msa1302600-mRNA-1
chr8_3 CDS 65176914 65177063 65176914 ID=Msa1302600-mRNA-1:cds;Parent=Msa1302600-mRNA-1
chr8_3 three_prime_UTR 65176662 65176913 65176662 ID=Msa1302600-mRNA-1:three_prime_utr;Parent=Msa1302600-mRNA-1
Gene Sequence

>Msa1302600

ATGGAAATTCCAAAGAGATTCAAAGGAAAGGTTGCGATCGTGACTGCTTCAACACAGGGAATTGGTTTTACCATTGCTGAGAGACTTGGTTTGGAAGGTGCTTCGGTTGTTATCTCTTCTCGCAGACAGAAAAATGTTGATGTAGCTGCTGAAAAACTGAGGGCCAAAGGAATTGATGTATTTGCAGTTGTTTGCCATGTCTCAAATGCTCTACAAAGGAAGGATTTGATTGACAAAACTAAGTATGGAAAGATAGATGTTGTTGTGTCCAATGCTGCTGCAAATCCTTCTGTTGATTCCATTCTGCAAACCCAAGATTCGGTCCTTGACAAGTTATGGGAGATAAATGTCAAAGCCACTATACTTCTTCTGAAGGATGCAGCTCCATACTTGCCGAAGGGTTCTTCTGTTGTTATCATTTCATCGATCGCTGGTTATCACCCACCAGCTAGTATGGCTATGTATGGAGTAACCAAAACAGCCCTTCTTGGCCTTACCAAAGCCCTGGCTGCTGAGATGGCCCCTAAAACTCGTGTAAACTGTGTTGCTCCTGGTTTTGTACCAACTAATTTTGCTTCATTCATCACCAGTAATTCTGCTATGAGAGAAGAGCTTGAAGCAAAGACATTACTTGGAAGACTTGGTACAACTGATGACATGGGTGCTGCTACAGCTTTTTTGGCATCTGATGATGCGTCATATATAACAGGAGAAACTATAGTAGTTTCCGGCGGAATGCCATCGAGACTGTAG
Protein sequence

>Msa1302600

MEIPKRFKGKVAIVTASTQGIGFTIAERLGLEGASVVISSRRQKNVDVAAEKLRAKGIDVFAVVCHVSNALQRKDLIDKTKYGKIDVVVSNAAANPSVDSILQTQDSVLDKLWEINVKATILLLKDAAPYLPKGSSVVIISSIAGYHPPASMAMYGVTKTALLGLTKALAAEMAPKTRVNCVAPGFVPTNFASFITSNSAMREELEAKTLLGRLGTTDDMGAATAFLASDDASYITGETIVVSGGMPSRL*