AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1362480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1362480 MtrunA17_Chr4g0075531 98.810 252 1 1 1 250 1 252 0.0 500
Msa1362480 MtrunA17_Chr3g0112271 35.772 246 151 4 7 246 17 261 2.40e-35 127
Msa1362480 MtrunA17_Chr3g0112151 33.333 246 157 4 7 246 86 330 5.13e-35 127
Msa1362480 MtrunA17_Chr3g0112141 32.927 246 158 4 7 246 17 261 1.33e-34 125
Msa1362480 MtrunA17_Chr3g0112171 31.707 246 161 4 7 246 15 259 7.72e-33 120
Msa1362480 MtrunA17_Chr4g0032141 32.932 249 154 5 7 246 56 300 8.18e-32 119
Msa1362480 MtrunA17_Chr7g0239451 33.984 256 156 7 5 248 12 266 2.01e-31 116
Msa1362480 MtrunA17_Chr3g0112261 32.377 244 158 4 9 246 21 263 3.26e-30 113
Msa1362480 MtrunA17_Chr7g0239481 31.200 250 161 5 7 246 15 263 1.90e-28 108
Msa1362480 MtrunA17_Chr7g0239491 32.271 251 160 5 7 248 15 264 1.36e-27 106
Msa1362480 MtrunA17_Chr4g0032181 30.870 230 152 4 23 246 17 245 5.23e-26 102
Msa1362480 MtrunA17_Chr7g0239501 32.400 250 158 5 7 246 16 264 2.16e-25 100
Msa1362480 MtrunA17_Chr7g0239511 31.600 250 160 5 7 246 16 264 2.92e-25 100
Msa1362480 MtrunA17_Chr6g0459281 31.873 251 156 7 6 244 12 259 3.76e-25 100
Msa1362480 MtrunA17_Chr7g0268591 28.462 260 165 8 5 248 31 285 1.53e-24 99.4
Msa1362480 MtrunA17_Chr6g0459301 31.373 255 156 7 6 246 13 262 2.93e-24 97.8
Msa1362480 MtrunA17_Chr7g0244061 31.502 273 156 10 4 248 26 295 3.23e-24 98.6
Msa1362480 MtrunA17_Chr1g0191751 28.854 253 164 7 6 245 100 349 3.49e-24 99.4
Msa1362480 MtrunA17_Chr7g0239461 29.644 253 121 6 5 248 12 216 4.70e-24 95.9
Msa1362480 MtrunA17_Chr7g0272961 27.559 254 168 7 5 245 38 288 6.90e-24 97.4
Msa1362480 MtrunA17_Chr7g0266981 31.128 257 160 8 2 246 8 259 8.96e-24 96.7
Msa1362480 MtrunA17_Chr6g0459261 31.641 256 154 8 6 246 24 273 1.09e-23 96.7
Msa1362480 MtrunA17_Chr6g0459351 30.677 251 159 7 6 244 12 259 2.68e-23 95.1
Msa1362480 MtrunA17_Chr4g0044111 31.128 257 160 8 2 246 8 259 2.71e-23 95.5
Msa1362480 MtrunA17_Chr7g0252031 30.769 260 160 10 5 248 33 288 9.19e-23 94.4
Msa1362480 MtrunA17_Chr3g0122901 30.739 257 158 9 2 246 70 318 1.30e-22 94.4
Msa1362480 MtrunA17_Chr4g0040371 30.916 262 159 8 4 248 16 272 1.91e-22 93.2
Msa1362480 MtrunA17_Chr6g0459271 33.074 257 149 9 6 246 12 261 2.00e-22 92.8
Msa1362480 MtrunA17_Chr3g0084871 34.572 269 136 12 5 246 14 269 4.44e-22 92.0
Msa1362480 MtrunA17_Chr4g0044131 29.297 256 162 8 3 245 4 253 7.48e-22 91.7
Msa1362480 MtrunA17_Chr7g0259521 30.120 249 163 7 7 245 6 253 2.13e-21 90.1
Msa1362480 MtrunA17_Chr4g0074511 29.297 256 162 7 6 246 39 290 1.25e-20 88.6
Msa1362480 MtrunA17_Chr6g0459331 30.830 253 160 8 6 246 12 261 4.77e-20 86.3
Msa1362480 MtrunA17_Chr7g0266891 30.159 252 159 8 7 246 7 253 2.05e-19 84.7
Msa1362480 MtrunA17_Chr7g0259531 30.159 252 161 9 7 246 11 259 6.31e-19 83.6
Msa1362480 MtrunA17_Chr4g0026001 28.063 253 164 8 5 246 12 257 9.45e-19 83.2
Msa1362480 MtrunA17_Chr4g0025971 26.984 252 168 7 5 246 12 257 1.25e-18 82.8
Msa1362480 MtrunA17_Chr8g0357481 30.469 256 164 5 4 246 11 265 2.12e-18 82.4
Msa1362480 MtrunA17_Chr7g0270441 29.921 254 164 7 5 247 4 254 1.46e-17 79.7
Msa1362480 MtrunA17_Chr0c30g0494101 29.183 257 161 8 5 246 38 288 2.11e-17 79.7
Msa1362480 MtrunA17_Chr2g0324021 28.346 254 165 7 5 246 4 252 2.34e-17 79.0
Msa1362480 MtrunA17_Chr7g0267011 30.159 189 124 6 3 185 4 190 2.51e-17 77.8
Msa1362480 MtrunA17_Chr7g0267001 28.458 253 150 8 3 245 4 235 5.85e-17 77.8
Msa1362480 MtrunA17_Chr4g0025981 28.740 254 151 11 8 244 42 282 1.06e-16 78.2
Msa1362480 MtrunA17_Chr7g0270451 29.845 258 160 8 3 246 2 252 5.57e-15 72.4
Msa1362480 MtrunA17_Chr1g0182511 27.843 255 168 6 4 245 11 262 1.11e-14 71.6
Msa1362480 MtrunA17_Chr4g0028921 25.954 262 172 8 1 245 5 261 6.15e-14 69.7
Msa1362480 MtrunA17_Chr8g0386201 26.222 225 146 5 3 220 41 252 7.94e-14 70.1
Msa1362480 MtrunA17_Chr8g0355281 28.497 193 123 7 13 191 75 266 4.39e-13 67.8
Msa1362480 MtrunA17_Chr4g0028911 23.256 258 184 6 1 245 5 261 1.15e-12 66.2
Msa1362480 MtrunA17_Chr7g0249571 27.513 189 128 5 10 189 41 229 2.15e-12 65.9
Msa1362480 MtrunA17_Chr7g0266991 28.986 207 122 6 5 206 23 209 9.95e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1362480 AT4G05530.1 72.908 251 66 1 2 250 4 254 1.50e-132 374
Msa1362480 AT5G06060.1 34.252 254 158 5 1 246 1 253 7.57e-36 128
Msa1362480 AT2G29150.1 34.538 249 147 8 7 245 16 258 3.24e-33 121
Msa1362480 AT2G29260.1 33.333 246 157 4 7 246 68 312 2.23e-31 118
Msa1362480 AT2G29360.1 33.197 244 156 5 9 246 18 260 1.62e-30 114
Msa1362480 AT2G29340.2 32.540 252 157 6 5 246 3 251 7.75e-29 110
Msa1362480 AT2G29340.1 32.540 252 157 6 5 246 3 251 1.36e-28 110
Msa1362480 AT2G29370.1 30.435 253 162 6 4 246 12 260 1.88e-27 106
Msa1362480 AT2G29290.2 31.621 253 158 7 5 246 3 251 3.02e-27 105
Msa1362480 AT2G29330.1 32.016 253 157 7 5 246 3 251 9.45e-27 104
Msa1362480 AT3G26760.1 30.502 259 160 8 5 246 34 289 9.29e-26 102
Msa1362480 AT2G29350.1 32.400 250 147 8 9 245 17 257 1.34e-24 99.0
Msa1362480 AT2G30670.1 30.588 255 158 7 5 246 3 251 3.04e-24 98.2
Msa1362480 AT1G07440.1 30.488 246 163 5 7 246 12 255 3.15e-24 98.2
Msa1362480 AT2G29300.1 29.845 258 161 8 3 246 1 252 3.82e-24 97.8
Msa1362480 AT2G29300.2 29.845 258 161 8 3 246 1 252 6.61e-24 97.8
Msa1362480 AT2G29320.1 30.159 252 158 7 7 246 13 258 1.00e-22 94.0
Msa1362480 AT3G04000.1 29.057 265 159 7 4 245 11 269 1.09e-22 94.0
Msa1362480 AT1G07450.1 30.078 256 164 8 1 246 1 251 2.30e-22 92.8
Msa1362480 AT5G18210.1 32.800 250 152 9 9 244 10 257 2.97e-22 92.8
Msa1362480 AT2G29290.1 30.303 231 148 6 25 246 8 234 4.32e-22 92.0
Msa1362480 AT2G47130.1 32.669 251 153 7 6 245 5 250 1.48e-21 90.9
Msa1362480 AT1G54870.1 27.273 253 168 6 6 245 81 330 1.60e-21 92.0
Msa1362480 AT1G54870.2 27.273 253 168 6 6 245 83 332 1.81e-21 92.0
Msa1362480 AT2G29310.1 29.249 253 164 6 5 246 3 251 1.18e-20 88.6
Msa1362480 AT4G13180.1 31.200 250 157 8 9 246 15 261 1.48e-20 88.2
Msa1362480 AT2G47120.2 30.303 264 153 11 6 249 6 258 1.67e-20 87.8
Msa1362480 AT2G47120.1 30.303 264 153 11 6 249 5 257 1.69e-20 87.8
Msa1362480 AT3G26770.1 29.231 260 160 10 5 246 39 292 3.08e-20 88.2
Msa1362480 AT3G03980.1 28.958 259 166 7 4 245 11 268 4.91e-20 87.0
Msa1362480 AT3G51680.1 30.403 273 157 10 4 248 29 296 9.74e-20 86.7
Msa1362480 AT1G24360.1 29.845 258 159 10 2 246 69 317 2.19e-19 85.9
Msa1362480 AT3G47350.2 29.048 210 131 6 9 202 46 253 5.79e-19 84.7
Msa1362480 AT2G29350.3 31.858 226 132 8 33 245 3 219 7.08e-19 82.8
Msa1362480 AT3G47350.1 29.048 210 131 6 9 202 46 253 7.45e-19 84.3
Msa1362480 AT3G29260.1 30.709 254 156 8 5 245 4 250 8.61e-19 83.2
Msa1362480 AT3G42960.1 31.298 262 157 9 5 248 6 262 9.28e-19 83.6
Msa1362480 AT1G63380.1 30.534 262 149 11 7 245 17 268 1.48e-18 83.2
Msa1362480 AT1G63380.4 30.534 262 149 11 7 245 19 270 1.49e-18 83.2
Msa1362480 AT1G63380.2 30.534 262 149 11 7 245 22 273 1.65e-18 83.2
Msa1362480 AT1G63380.3 30.534 262 149 11 7 245 15 266 1.81e-18 82.8
Msa1362480 AT3G29250.2 32.558 258 149 12 6 247 5 253 2.39e-18 82.0
Msa1362480 AT2G47140.1 30.233 258 153 8 5 245 4 251 2.92e-18 81.6
Msa1362480 AT4G03140.1 26.172 256 172 8 5 246 76 328 3.39e-18 82.8
Msa1362480 AT3G29250.3 31.890 254 154 10 6 246 41 288 4.99e-18 81.6
Msa1362480 AT5G18210.2 32.627 236 143 9 9 230 10 243 5.67e-18 81.3
Msa1362480 AT2G29320.2 29.237 236 149 7 23 246 11 240 9.26e-18 80.5
Msa1362480 AT1G62610.2 30.268 261 151 11 7 245 13 264 2.01e-17 79.7
Msa1362480 AT1G62610.3 30.268 261 151 11 7 245 15 266 2.04e-17 79.7
Msa1362480 AT1G62610.1 30.268 261 151 11 7 245 14 265 2.06e-17 79.7
Msa1362480 AT1G52340.1 29.197 274 147 11 5 246 16 274 2.35e-17 79.7
Msa1362480 AT1G62610.4 30.268 261 151 11 7 245 19 270 2.47e-17 79.7
Msa1362480 AT3G55290.1 28.906 256 160 9 7 245 18 268 3.29e-17 79.3
Msa1362480 AT3G55290.2 28.906 256 160 9 7 245 17 267 3.41e-17 79.3
Msa1362480 AT3G29250.1 31.873 251 152 10 9 246 46 290 4.42e-17 79.3
Msa1362480 AT3G12800.1 29.502 261 161 7 4 246 7 262 5.34e-17 79.0
Msa1362480 AT2G29340.3 30.769 195 126 5 3 189 1 194 1.05e-16 76.6
Msa1362480 AT2G29340.4 30.769 195 126 5 3 189 1 194 1.05e-16 76.6
Msa1362480 AT3G47360.1 29.947 187 123 5 10 190 48 232 5.23e-16 76.3
Msa1362480 AT3G46170.1 29.119 261 155 11 6 245 25 276 5.30e-16 76.3
Msa1362480 AT2G17845.1 26.692 266 156 10 7 245 47 300 1.27e-15 75.5
Msa1362480 AT3G55310.1 28.462 260 156 10 7 245 17 267 1.43e-15 74.7
Msa1362480 AT2G29310.2 27.897 233 155 5 23 246 21 249 2.00e-15 73.9
Msa1362480 AT2G29350.2 31.053 190 118 6 9 189 17 202 5.42e-15 72.4
Msa1362480 AT5G50700.1 27.128 188 123 6 9 187 47 229 6.47e-14 70.9
Msa1362480 AT5G50600.1 27.128 188 123 6 9 187 47 229 6.47e-14 70.9
Msa1362480 AT5G50590.2 27.513 189 129 5 5 187 43 229 6.67e-13 67.0
Msa1362480 AT5G50690.2 27.513 189 129 5 5 187 43 229 6.67e-13 67.0
Msa1362480 AT5G50590.1 27.513 189 129 5 5 187 43 229 1.79e-12 66.2
Msa1362480 AT5G50690.1 27.513 189 129 5 5 187 43 229 1.79e-12 66.2
Msa1362480 AT3G03330.1 28.125 192 128 5 8 189 42 233 5.76e-12 65.1
Msa1362480 AT2G29320.3 28.718 195 121 7 7 189 13 201 3.56e-11 61.2

Find 76 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATTTCGCCATTACATTT+TGG 0.160200 tig0017882:+6665 None:intergenic
CCAAAATGTAATGGCGAAAT+TGG 0.222003 tig0017882:-6665 Msa1362480:three_prime_UTR
ACCTTTCCTTTGAATCTCTT+TGG 0.229084 tig0017882:+8600 None:intergenic
TTTGGCTTGTTACAGAAGTA+TGG 0.300714 tig0017882:-7817 Msa1362480:intron
GAAGAACCCTTCGGCAAGTA+TGG 0.332535 tig0017882:+7459 None:intergenic
AAGGCCAAGAAGGGCTGTTT+TGG 0.335058 tig0017882:+7371 None:intergenic
TCGGATTCGAAGGTAGAAAA+TGG 0.337630 tig0017882:-8628 Msa1362480:exon
ATTCGGTCCTTGACAAGTTA+TGG 0.346257 tig0017882:-7726 Msa1362480:CDS
AGCATACTAGAAGATGAAAA+TGG 0.360632 tig0017882:+6703 None:intergenic
GTAACCAAAACAGCCCTTCT+TGG 0.370781 tig0017882:-7375 Msa1362480:CDS
CGCTGTAGTTATGAAATGAT+AGG 0.372713 tig0017882:-6580 Msa1362480:three_prime_UTR
ACTTGTCAAGGACCGAATCT+TGG 0.376699 tig0017882:+7731 None:intergenic
ATCTTCTAGTATGCTTCCGT+TGG 0.377400 tig0017882:-6695 Msa1362480:three_prime_UTR
CTTGAAGCAAAGACATTACT+TGG 0.379309 tig0017882:-6847 Msa1362480:CDS
TTATCACCCACCAGCTAGTA+TGG 0.380678 tig0017882:-7409 Msa1362480:CDS
ACTCACCATAGCAGAATTAC+TGG 0.391347 tig0017882:+7153 None:intergenic
TGCAAATACATCAATTCCTT+TGG 0.391428 tig0017882:+8265 None:intergenic
GGAGAAACTATAGTAGTTTC+CGG 0.394523 tig0017882:-6751 Msa1362480:CDS
TTCGGTCCTTGACAAGTTAT+GGG 0.394972 tig0017882:-7725 Msa1362480:CDS
ACTGCTTCAACACAGGGAAT+TGG 0.396053 tig0017882:-8567 Msa1362480:CDS
CATTGCTGAGAGACTTGGTT+TGG 0.401132 tig0017882:-8538 Msa1362480:CDS
GATGATGCGTCATATATAAC+AGG 0.401523 tig0017882:-6772 Msa1362480:CDS
TAGGGGCCATCTCAGCAGCC+AGG 0.410588 tig0017882:+7236 None:intergenic
CGAATCTTGGGTTTGCAGAA+TGG 0.413839 tig0017882:+7744 None:intergenic
CTTGTCAAGGACCGAATCTT+GGG 0.415114 tig0017882:+7732 None:intergenic
GTAGGCCCTGGCTGCTGAGA+TGG 0.440474 tig0017882:-7242 Msa1362480:intron
AGAAGGATTTGCAGCAGCAT+TGG 0.451910 tig0017882:+7774 None:intergenic
TGTTATCTCTTCTCGCAGAC+AGG 0.457846 tig0017882:-8502 Msa1362480:intron
GATCGTGACTGCTTCAACAC+AGG 0.459705 tig0017882:-8574 Msa1362480:CDS
CCAGCTAGTATGGCTATGTA+TGG 0.467840 tig0017882:-7399 Msa1362480:CDS
GCTGTAGTTATGAAATGATA+GGG 0.469812 tig0017882:-6579 Msa1362480:three_prime_UTR
TTTACCATTGCTGAGAGACT+TGG 0.472945 tig0017882:-8543 Msa1362480:CDS
TACCTTCAGAAGAAGTATAG+TGG 0.476458 tig0017882:+7687 None:intergenic
CGTGTAAACTGTGTTGCTCC+TGG 0.479482 tig0017882:-7208 Msa1362480:CDS
CATTCTGCAAACCCAAGATT+CGG 0.481732 tig0017882:-7743 Msa1362480:CDS
TGTAGCAGCACCCATGTCTT+CGG 0.486116 tig0017882:+6810 None:intergenic
CACAGCCACACGCTTAGGTT+CGG 0.490961 tig0017882:+8651 None:intergenic
AGGGGCCATCTCAGCAGCCA+GGG 0.499508 tig0017882:+7237 None:intergenic
GTTATCATTTCATCGATCGC+TGG 0.504376 tig0017882:-7432 Msa1362480:CDS
CGACTTTGGTAAGGCCAAGA+AGG 0.505337 tig0017882:+7361 None:intergenic
ATGAATGAAGCAAAATTAGT+TGG 0.506154 tig0017882:+7178 None:intergenic
CTCAAATGCTCTACAAAGGA+AGG 0.512057 tig0017882:-8228 Msa1362480:CDS
ACCTAAGCGTGTGGCTGTGT+CGG 0.518751 tig0017882:-8647 Msa1362480:five_prime_UTR
GAAATTCCAAAGAGATTCAA+AGG 0.522716 tig0017882:-8606 Msa1362480:CDS
TCCGACACAGCCACACGCTT+AGG 0.533078 tig0017882:+8646 None:intergenic
ACTTGGTACAACCGAAGACA+TGG 0.533738 tig0017882:-6821 Msa1362480:CDS
TCTTCTAGTATGCTTCCGTT+GGG 0.539298 tig0017882:-6694 Msa1362480:three_prime_UTR
TAAGAATAATAGCATTGAGC+TGG 0.540343 tig0017882:-6607 Msa1362480:three_prime_UTR
AAGACATTACTTGGAAGACT+TGG 0.543455 tig0017882:-6838 Msa1362480:CDS
TGTGGCTGTGTCGGATTCGA+AGG 0.547446 tig0017882:-8638 Msa1362480:five_prime_UTR
TTTGTAGAGCATTTGAGACA+TGG 0.550170 tig0017882:+8234 None:intergenic
TCCAAAGAGATTCAAAGGAA+AGG 0.550796 tig0017882:-8601 Msa1362480:CDS
GGCAAGTACCGACTTTGGTA+AGG 0.550957 tig0017882:+7352 None:intergenic
CATCACCAGTAATTCTGCTA+TGG 0.551246 tig0017882:-7158 Msa1362480:intron
GACTTTGGTAAGGCCAAGAA+GGG 0.555272 tig0017882:+7362 None:intergenic
GGGTCTAGTCCAAAATGTAA+TGG 0.560206 tig0017882:-6674 Msa1362480:three_prime_UTR
GCTGAGAGACTTGGTTTGGA+AGG 0.565863 tig0017882:-8534 Msa1362480:CDS
TTATCTCCCATAACTTGTCA+AGG 0.576972 tig0017882:+7719 None:intergenic
TGCAGAATGGAATCAACAGA+AGG 0.579952 tig0017882:+7757 None:intergenic
CCATACATAGCCATACTAGC+TGG 0.584897 tig0017882:+7399 None:intergenic
TGCAGCTCCATACTTGCCGA+AGG 0.587100 tig0017882:-7466 Msa1362480:CDS
ATCGTGACTGCTTCAACACA+GGG 0.594859 tig0017882:-8573 Msa1362480:CDS
AGCCACTATACTTCTTCTGA+AGG 0.599186 tig0017882:-7689 Msa1362480:intron
TACATAGCCATACTAGCTGG+TGG 0.601638 tig0017882:+7402 None:intergenic
CAGTCTCGATGGCATTCCGC+CGG 0.603575 tig0017882:+6732 None:intergenic
AAATTAGTTGGTACAAAACC+AGG 0.611900 tig0017882:+7190 None:intergenic
ATAACAACAGAAGAACCCTT+CGG 0.615477 tig0017882:+7450 None:intergenic
CAAACCAAGTCTCTCAGCAA+TGG 0.620172 tig0017882:+8539 None:intergenic
AATGGAAGCTACAGTCTCGA+TGG 0.627135 tig0017882:+6721 None:intergenic
CTGTAGTTATGAAATGATAG+GGG 0.627927 tig0017882:-6578 Msa1362480:three_prime_UTR
ATGTCTCAAATGCTCTACAA+AGG 0.639990 tig0017882:-8232 Msa1362480:CDS
ACATAGCCATACTAGCTGGT+GGG 0.645983 tig0017882:+7403 None:intergenic
GACAACCGAACCTAAGCGTG+TGG 0.646777 tig0017882:-8656 Msa1362480:five_prime_UTR
GCAGCTCCATACTTGCCGAA+GGG 0.672297 tig0017882:-7465 Msa1362480:CDS
CTTGGTACAACCGAAGACAT+GGG 0.677968 tig0017882:-6820 Msa1362480:CDS
GAAACTATAGTAGTTTCCGG+CGG 0.735826 tig0017882:-6748 Msa1362480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+TGG + tig0017882:7631-7650 None:intergenic 0.0%
!! ATATATATATATATATATAT+TGG + tig0017882:7631-7650 None:intergenic 0.0%
!!! TCCATATTATTTTTTTAATT+TGG - tig0017882:6910-6929 Msa1362480:intron 10.0%
!! ACCAAATTAAAAAAATAATA+TGG + tig0017882:6914-6933 None:intergenic 10.0%
!!! TCCATATTATTTTTTTAATT+TGG - tig0017882:6910-6929 Msa1362480:intron 10.0%
!! ACCAAATTAAAAAAATAATA+TGG + tig0017882:6914-6933 None:intergenic 10.0%
!!! TATTTTTAGACATATCATTA+TGG + tig0017882:6479-6498 None:intergenic 15.0%
!!! AATATGTGTTTGAATTTTTT+TGG - tig0017882:7411-7430 Msa1362480:CDS 15.0%
!! ATTATGTAAATATAATGTGT+AGG - tig0017882:7986-8005 Msa1362480:intron 15.0%
!!! TATTTTTAGACATATCATTA+TGG + tig0017882:6479-6498 None:intergenic 15.0%
!!! AATATGTGTTTGAATTTTTT+TGG - tig0017882:7411-7430 Msa1362480:CDS 15.0%
!! ATTATGTAAATATAATGTGT+AGG - tig0017882:7986-8005 Msa1362480:intron 15.0%
!! GAATGAATCAAATAAGAAAA+AGG + tig0017882:6777-6796 None:intergenic 20.0%
!! GTAAATTATTGTATGAGAAT+TGG - tig0017882:6825-6844 Msa1362480:CDS 20.0%
!! TTGTACAAAATATGAATGAT+GGG + tig0017882:7270-7289 None:intergenic 20.0%
!! TGTACAAGTTTAAATAGAAT+TGG - tig0017882:7283-7302 Msa1362480:intron 20.0%
!!! ATGTTTTGTCATTATGATTT+TGG - tig0017882:7314-7333 Msa1362480:intron 20.0%
!! AAAAACAGTAACAATTCATA+TGG + tig0017882:7942-7961 None:intergenic 20.0%
!! GAATGAATCAAATAAGAAAA+AGG + tig0017882:6777-6796 None:intergenic 20.0%
!! GTAAATTATTGTATGAGAAT+TGG - tig0017882:6825-6844 Msa1362480:CDS 20.0%
!! TTGTACAAAATATGAATGAT+GGG + tig0017882:7270-7289 None:intergenic 20.0%
!! TGTACAAGTTTAAATAGAAT+TGG - tig0017882:7283-7302 Msa1362480:intron 20.0%
!!! ATGTTTTGTCATTATGATTT+TGG - tig0017882:7314-7333 Msa1362480:intron 20.0%
!! AAAAACAGTAACAATTCATA+TGG + tig0017882:7942-7961 None:intergenic 20.0%
! CATATAGGATAGTTGTAAAA+TGG + tig0017882:7170-7189 None:intergenic 25.0%
! TAAGACATCAAATCTCATAT+AGG + tig0017882:7185-7204 None:intergenic 25.0%
! CTTGTACAAAATATGAATGA+TGG + tig0017882:7271-7290 None:intergenic 25.0%
! ACAAGTTTAAATAGAATTGG+CGG - tig0017882:7286-7305 Msa1362480:intron 25.0%
! ATGAATGAAGCAAAATTAGT+TGG + tig0017882:8071-8090 None:intergenic 25.0%
!! GAGTATCTTTTTAACCAAAT+AGG - tig0017882:8112-8131 Msa1362480:intron 25.0%
! ATATATCATTTGTGTCTGAA+TGG - tig0017882:8344-8363 Msa1362480:intron 25.0%
! CATATAGGATAGTTGTAAAA+TGG + tig0017882:7170-7189 None:intergenic 25.0%
! TAAGACATCAAATCTCATAT+AGG + tig0017882:7185-7204 None:intergenic 25.0%
! CTTGTACAAAATATGAATGA+TGG + tig0017882:7271-7290 None:intergenic 25.0%
! ACAAGTTTAAATAGAATTGG+CGG - tig0017882:7286-7305 Msa1362480:intron 25.0%
! ATGAATGAAGCAAAATTAGT+TGG + tig0017882:8071-8090 None:intergenic 25.0%
!! GAGTATCTTTTTAACCAAAT+AGG - tig0017882:8112-8131 Msa1362480:intron 25.0%
! ATATATCATTTGTGTCTGAA+TGG - tig0017882:8344-8363 Msa1362480:intron 25.0%
GAAATTCCAAAGAGATTCAA+AGG - tig0017882:6640-6659 Msa1362480:three_prime_UTR 30.0%
TGCAAATACATCAATTCCTT+TGG + tig0017882:6984-7003 None:intergenic 30.0%
! CACAAGTCTTGTATTGAAAT+TGG + tig0017882:7103-7122 None:intergenic 30.0%
!!! TGTCATTATGATTTTGGCTT+TGG - tig0017882:7320-7339 Msa1362480:intron 30.0%
TGTCTTTCTCACTATTTGAA+TGG - tig0017882:7382-7401 Msa1362480:CDS 30.0%
AGGTAATTAAGCTGTGAAAA+TGG - tig0017882:7577-7596 Msa1362480:intron 30.0%
! AGTGTGTTGATGTAGTAAAA+TGG - tig0017882:7735-7754 Msa1362480:CDS 30.0%
ATATTGAAGGAACAATTGGA+AGG + tig0017882:7918-7937 None:intergenic 30.0%
CAATTCATATGGCATATTGA+AGG + tig0017882:7931-7950 None:intergenic 30.0%
! AAATTAGTTGGTACAAAACC+AGG + tig0017882:8059-8078 None:intergenic 30.0%
AGCATACTAGAAGATGAAAA+TGG + tig0017882:8546-8565 None:intergenic 30.0%
! TAAGAATAATAGCATTGAGC+TGG - tig0017882:8639-8658 Msa1362480:five_prime_UTR 30.0%
GCTGTAGTTATGAAATGATA+GGG - tig0017882:8667-8686 Msa1362480:five_prime_UTR 30.0%
CTGTAGTTATGAAATGATAG+GGG - tig0017882:8668-8687 Msa1362480:five_prime_UTR 30.0%
!!! ATAGGGGATTTTGCTTTTTA+AGG - tig0017882:8684-8703 Msa1362480:five_prime_UTR 30.0%
!!! TAGGGGATTTTGCTTTTTAA+GGG - tig0017882:8685-8704 Msa1362480:five_prime_UTR 30.0%
GAAATTCCAAAGAGATTCAA+AGG - tig0017882:6640-6659 Msa1362480:three_prime_UTR 30.0%
TGCAAATACATCAATTCCTT+TGG + tig0017882:6984-7003 None:intergenic 30.0%
! CACAAGTCTTGTATTGAAAT+TGG + tig0017882:7103-7122 None:intergenic 30.0%
!!! TGTCATTATGATTTTGGCTT+TGG - tig0017882:7320-7339 Msa1362480:intron 30.0%
TGTCTTTCTCACTATTTGAA+TGG - tig0017882:7382-7401 Msa1362480:CDS 30.0%
AGGTAATTAAGCTGTGAAAA+TGG - tig0017882:7577-7596 Msa1362480:intron 30.0%
! AGTGTGTTGATGTAGTAAAA+TGG - tig0017882:7735-7754 Msa1362480:CDS 30.0%
ATATTGAAGGAACAATTGGA+AGG + tig0017882:7918-7937 None:intergenic 30.0%
CAATTCATATGGCATATTGA+AGG + tig0017882:7931-7950 None:intergenic 30.0%
! AAATTAGTTGGTACAAAACC+AGG + tig0017882:8059-8078 None:intergenic 30.0%
AGCATACTAGAAGATGAAAA+TGG + tig0017882:8546-8565 None:intergenic 30.0%
! TAAGAATAATAGCATTGAGC+TGG - tig0017882:8639-8658 Msa1362480:five_prime_UTR 30.0%
GCTGTAGTTATGAAATGATA+GGG - tig0017882:8667-8686 Msa1362480:five_prime_UTR 30.0%
CTGTAGTTATGAAATGATAG+GGG - tig0017882:8668-8687 Msa1362480:five_prime_UTR 30.0%
!!! ATAGGGGATTTTGCTTTTTA+AGG - tig0017882:8684-8703 Msa1362480:five_prime_UTR 30.0%
!!! TAGGGGATTTTGCTTTTTAA+GGG - tig0017882:8685-8704 Msa1362480:five_prime_UTR 30.0%
!! CTCTGAAACTGAGAAAAACA+AGG + tig0017882:6571-6590 None:intergenic 35.0%
TCCAAAGAGATTCAAAGGAA+AGG - tig0017882:6645-6664 Msa1362480:three_prime_UTR 35.0%
ACCTTTCCTTTGAATCTCTT+TGG + tig0017882:6649-6668 None:intergenic 35.0%
! TTTGTAGAGCATTTGAGACA+TGG + tig0017882:7015-7034 None:intergenic 35.0%
ATGTCTCAAATGCTCTACAA+AGG - tig0017882:7014-7033 Msa1362480:intron 35.0%
TTTGATTGACAAAACTGTCC+AGG - tig0017882:7042-7061 Msa1362480:intron 35.0%
TGAGATTTGATGTCTTATCC+AGG - tig0017882:7188-7207 Msa1362480:CDS 35.0%
CTGGACAGTATGTATGTTAT+TGG - tig0017882:7234-7253 Msa1362480:CDS 35.0%
!! TTTGGCTTGTTACAGAAGTA+TGG - tig0017882:7429-7448 Msa1362480:CDS 35.0%
! TTATCTCCCATAACTTGTCA+AGG + tig0017882:7530-7549 None:intergenic 35.0%
! TACCTTCAGAAGAAGTATAG+TGG + tig0017882:7562-7581 None:intergenic 35.0%
CTACACAAAGATGGAAGAAA+GGG + tig0017882:7717-7736 None:intergenic 35.0%
ACTACACAAAGATGGAAGAA+AGG + tig0017882:7718-7737 None:intergenic 35.0%
ATCAACACACTACACAAAGA+TGG + tig0017882:7726-7745 None:intergenic 35.0%
GGTGTCTGATAATTATACAC+AGG - tig0017882:7756-7775 Msa1362480:CDS 35.0%
ATAACAACAGAAGAACCCTT+CGG + tig0017882:7799-7818 None:intergenic 35.0%
TGGCATATTGAAGGAACAAT+TGG + tig0017882:7922-7941 None:intergenic 35.0%
TAAATATAATGTGTAGGCCC+TGG - tig0017882:7992-8011 Msa1362480:intron 35.0%
!! ACAGTTTACACGAGTTTTAG+GGG + tig0017882:8030-8049 None:intergenic 35.0%
! CACAGTTTACACGAGTTTTA+GGG + tig0017882:8031-8050 None:intergenic 35.0%
! ACACAGTTTACACGAGTTTT+AGG + tig0017882:8032-8051 None:intergenic 35.0%
GGAAAGAGGAAAAACCTATT+TGG + tig0017882:8129-8148 None:intergenic 35.0%
TAGCAAATGATACACAACAC+AGG + tig0017882:8160-8179 None:intergenic 35.0%
! CTTTCAATCTAAAGTGTCAG+TGG + tig0017882:8190-8209 None:intergenic 35.0%
CATTATCTTTGTCTACGTGT+TGG - tig0017882:8291-8310 Msa1362480:CDS 35.0%
!! GATATATGAAGCACTGATAC+TGG + tig0017882:8331-8350 None:intergenic 35.0%
!! TTGTGTCTGAATGGATTTTG+TGG - tig0017882:8353-8372 Msa1362480:intron 35.0%
CTTGAAGCAAAGACATTACT+TGG - tig0017882:8399-8418 Msa1362480:intron 35.0%
AAGACATTACTTGGAAGACT+TGG - tig0017882:8408-8427 Msa1362480:intron 35.0%
GATGATGCGTCATATATAAC+AGG - tig0017882:8474-8493 Msa1362480:intron 35.0%
GGAGAAACTATAGTAGTTTC+CGG - tig0017882:8495-8514 Msa1362480:intron 35.0%
! CCAATTTCGCCATTACATTT+TGG + tig0017882:8584-8603 None:intergenic 35.0%
CCAAAATGTAATGGCGAAAT+TGG - tig0017882:8581-8600 Msa1362480:CDS 35.0%
CGCTGTAGTTATGAAATGAT+AGG - tig0017882:8666-8685 Msa1362480:five_prime_UTR 35.0%
!!! AGGGGATTTTGCTTTTTAAG+GGG - tig0017882:8686-8705 Msa1362480:five_prime_UTR 35.0%
!! CTCTGAAACTGAGAAAAACA+AGG + tig0017882:6571-6590 None:intergenic 35.0%
TCCAAAGAGATTCAAAGGAA+AGG - tig0017882:6645-6664 Msa1362480:three_prime_UTR 35.0%
ACCTTTCCTTTGAATCTCTT+TGG + tig0017882:6649-6668 None:intergenic 35.0%
! TTTGTAGAGCATTTGAGACA+TGG + tig0017882:7015-7034 None:intergenic 35.0%
ATGTCTCAAATGCTCTACAA+AGG - tig0017882:7014-7033 Msa1362480:intron 35.0%
TTTGATTGACAAAACTGTCC+AGG - tig0017882:7042-7061 Msa1362480:intron 35.0%
TGAGATTTGATGTCTTATCC+AGG - tig0017882:7188-7207 Msa1362480:CDS 35.0%
CTGGACAGTATGTATGTTAT+TGG - tig0017882:7234-7253 Msa1362480:CDS 35.0%
!! TTTGGCTTGTTACAGAAGTA+TGG - tig0017882:7429-7448 Msa1362480:CDS 35.0%
! TTATCTCCCATAACTTGTCA+AGG + tig0017882:7530-7549 None:intergenic 35.0%
! TACCTTCAGAAGAAGTATAG+TGG + tig0017882:7562-7581 None:intergenic 35.0%
CTACACAAAGATGGAAGAAA+GGG + tig0017882:7717-7736 None:intergenic 35.0%
ACTACACAAAGATGGAAGAA+AGG + tig0017882:7718-7737 None:intergenic 35.0%
ATCAACACACTACACAAAGA+TGG + tig0017882:7726-7745 None:intergenic 35.0%
GGTGTCTGATAATTATACAC+AGG - tig0017882:7756-7775 Msa1362480:CDS 35.0%
ATAACAACAGAAGAACCCTT+CGG + tig0017882:7799-7818 None:intergenic 35.0%
TGGCATATTGAAGGAACAAT+TGG + tig0017882:7922-7941 None:intergenic 35.0%
TAAATATAATGTGTAGGCCC+TGG - tig0017882:7992-8011 Msa1362480:intron 35.0%
!! ACAGTTTACACGAGTTTTAG+GGG + tig0017882:8030-8049 None:intergenic 35.0%
! CACAGTTTACACGAGTTTTA+GGG + tig0017882:8031-8050 None:intergenic 35.0%
! ACACAGTTTACACGAGTTTT+AGG + tig0017882:8032-8051 None:intergenic 35.0%
GGAAAGAGGAAAAACCTATT+TGG + tig0017882:8129-8148 None:intergenic 35.0%
TAGCAAATGATACACAACAC+AGG + tig0017882:8160-8179 None:intergenic 35.0%
! CTTTCAATCTAAAGTGTCAG+TGG + tig0017882:8190-8209 None:intergenic 35.0%
CATTATCTTTGTCTACGTGT+TGG - tig0017882:8291-8310 Msa1362480:CDS 35.0%
!! GATATATGAAGCACTGATAC+TGG + tig0017882:8331-8350 None:intergenic 35.0%
!! TTGTGTCTGAATGGATTTTG+TGG - tig0017882:8353-8372 Msa1362480:intron 35.0%
CTTGAAGCAAAGACATTACT+TGG - tig0017882:8399-8418 Msa1362480:intron 35.0%
AAGACATTACTTGGAAGACT+TGG - tig0017882:8408-8427 Msa1362480:intron 35.0%
GATGATGCGTCATATATAAC+AGG - tig0017882:8474-8493 Msa1362480:intron 35.0%
GGAGAAACTATAGTAGTTTC+CGG - tig0017882:8495-8514 Msa1362480:intron 35.0%
! CCAATTTCGCCATTACATTT+TGG + tig0017882:8584-8603 None:intergenic 35.0%
CCAAAATGTAATGGCGAAAT+TGG - tig0017882:8581-8600 Msa1362480:CDS 35.0%
CGCTGTAGTTATGAAATGAT+AGG - tig0017882:8666-8685 Msa1362480:five_prime_UTR 35.0%
!!! AGGGGATTTTGCTTTTTAAG+GGG - tig0017882:8686-8705 Msa1362480:five_prime_UTR 35.0%
TCGGATTCGAAGGTAGAAAA+TGG - tig0017882:6618-6637 Msa1362480:three_prime_UTR 40.0%
TTTACCATTGCTGAGAGACT+TGG - tig0017882:6703-6722 Msa1362480:three_prime_UTR 40.0%
ATGTAGCTGCTGAAAAACTG+AGG - tig0017882:6957-6976 Msa1362480:intron 40.0%
TGTAGCTGCTGAAAAACTGA+GGG - tig0017882:6958-6977 Msa1362480:intron 40.0%
CTCAAATGCTCTACAAAGGA+AGG - tig0017882:7018-7037 Msa1362480:intron 40.0%
AGAGAAGATGAATTCACACC+TGG + tig0017882:7063-7082 None:intergenic 40.0%
! TGGTCATTAGTGTTACTGCT+AGG + tig0017882:7150-7169 None:intergenic 40.0%
TAACATACATACTGTCCAGC+TGG + tig0017882:7233-7252 None:intergenic 40.0%
TGCAGAATGGAATCAACAGA+AGG + tig0017882:7492-7511 None:intergenic 40.0%
CATTCTGCAAACCCAAGATT+CGG - tig0017882:7503-7522 Msa1362480:intron 40.0%
ATTCGGTCCTTGACAAGTTA+TGG - tig0017882:7520-7539 Msa1362480:intron 40.0%
TTCGGTCCTTGACAAGTTAT+GGG - tig0017882:7521-7540 Msa1362480:intron 40.0%
AGCCACTATACTTCTTCTGA+AGG - tig0017882:7557-7576 Msa1362480:intron 40.0%
GTTATCATTTCATCGATCGC+TGG - tig0017882:7814-7833 Msa1362480:intron 40.0%
CATCACCAGTAATTCTGCTA+TGG - tig0017882:8088-8107 Msa1362480:intron 40.0%
ACTCACCATAGCAGAATTAC+TGG + tig0017882:8096-8115 None:intergenic 40.0%
GAAACTATAGTAGTTTCCGG+CGG - tig0017882:8498-8517 Msa1362480:intron 40.0%
ATCTTCTAGTATGCTTCCGT+TGG - tig0017882:8551-8570 Msa1362480:CDS 40.0%
TCTTCTAGTATGCTTCCGTT+GGG - tig0017882:8552-8571 Msa1362480:CDS 40.0%
!! ACATTTTGGACTAGACCCAA+CGG + tig0017882:8570-8589 None:intergenic 40.0%
GGGTCTAGTCCAAAATGTAA+TGG - tig0017882:8572-8591 Msa1362480:CDS 40.0%
!!! GGGGATTTTGCTTTTTAAGG+GGG - tig0017882:8687-8706 Msa1362480:five_prime_UTR 40.0%
!!! GGGATTTTGCTTTTTAAGGG+GGG - tig0017882:8688-8707 Msa1362480:five_prime_UTR 40.0%
!!! GGATTTTGCTTTTTAAGGGG+GGG - tig0017882:8689-8708 Msa1362480:five_prime_UTR 40.0%
TCGGATTCGAAGGTAGAAAA+TGG - tig0017882:6618-6637 Msa1362480:three_prime_UTR 40.0%
TTTACCATTGCTGAGAGACT+TGG - tig0017882:6703-6722 Msa1362480:three_prime_UTR 40.0%
ATGTAGCTGCTGAAAAACTG+AGG - tig0017882:6957-6976 Msa1362480:intron 40.0%
TGTAGCTGCTGAAAAACTGA+GGG - tig0017882:6958-6977 Msa1362480:intron 40.0%
CTCAAATGCTCTACAAAGGA+AGG - tig0017882:7018-7037 Msa1362480:intron 40.0%
AGAGAAGATGAATTCACACC+TGG + tig0017882:7063-7082 None:intergenic 40.0%
! TGGTCATTAGTGTTACTGCT+AGG + tig0017882:7150-7169 None:intergenic 40.0%
TAACATACATACTGTCCAGC+TGG + tig0017882:7233-7252 None:intergenic 40.0%
TGCAGAATGGAATCAACAGA+AGG + tig0017882:7492-7511 None:intergenic 40.0%
CATTCTGCAAACCCAAGATT+CGG - tig0017882:7503-7522 Msa1362480:intron 40.0%
ATTCGGTCCTTGACAAGTTA+TGG - tig0017882:7520-7539 Msa1362480:intron 40.0%
TTCGGTCCTTGACAAGTTAT+GGG - tig0017882:7521-7540 Msa1362480:intron 40.0%
AGCCACTATACTTCTTCTGA+AGG - tig0017882:7557-7576 Msa1362480:intron 40.0%
GTTATCATTTCATCGATCGC+TGG - tig0017882:7814-7833 Msa1362480:intron 40.0%
CATCACCAGTAATTCTGCTA+TGG - tig0017882:8088-8107 Msa1362480:intron 40.0%
ACTCACCATAGCAGAATTAC+TGG + tig0017882:8096-8115 None:intergenic 40.0%
GAAACTATAGTAGTTTCCGG+CGG - tig0017882:8498-8517 Msa1362480:intron 40.0%
ATCTTCTAGTATGCTTCCGT+TGG - tig0017882:8551-8570 Msa1362480:CDS 40.0%
TCTTCTAGTATGCTTCCGTT+GGG - tig0017882:8552-8571 Msa1362480:CDS 40.0%
!! ACATTTTGGACTAGACCCAA+CGG + tig0017882:8570-8589 None:intergenic 40.0%
GGGTCTAGTCCAAAATGTAA+TGG - tig0017882:8572-8591 Msa1362480:CDS 40.0%
!!! GGGGATTTTGCTTTTTAAGG+GGG - tig0017882:8687-8706 Msa1362480:five_prime_UTR 40.0%
!!! GGGATTTTGCTTTTTAAGGG+GGG - tig0017882:8688-8707 Msa1362480:five_prime_UTR 40.0%
!!! GGATTTTGCTTTTTAAGGGG+GGG - tig0017882:8689-8708 Msa1362480:five_prime_UTR 40.0%
ATCGTGACTGCTTCAACACA+GGG - tig0017882:6673-6692 Msa1362480:three_prime_UTR 45.0%
ACTGCTTCAACACAGGGAAT+TGG - tig0017882:6679-6698 Msa1362480:three_prime_UTR 45.0%
CAAACCAAGTCTCTCAGCAA+TGG + tig0017882:6710-6729 None:intergenic 45.0%
! CATTGCTGAGAGACTTGGTT+TGG - tig0017882:6708-6727 Msa1362480:three_prime_UTR 45.0%
TGTTATCTCTTCTCGCAGAC+AGG - tig0017882:6744-6763 Msa1362480:CDS 45.0%
! AAGAACTGGACTTGGTAACC+TGG + tig0017882:7209-7228 None:intergenic 45.0%
AGAAGGATTTGCAGCAGCAT+TGG + tig0017882:7475-7494 None:intergenic 45.0%
CGAATCTTGGGTTTGCAGAA+TGG + tig0017882:7505-7524 None:intergenic 45.0%
CTTGTCAAGGACCGAATCTT+GGG + tig0017882:7517-7536 None:intergenic 45.0%
ACTTGTCAAGGACCGAATCT+TGG + tig0017882:7518-7537 None:intergenic 45.0%
TTATCACCCACCAGCTAGTA+TGG - tig0017882:7837-7856 Msa1362480:intron 45.0%
ACATAGCCATACTAGCTGGT+GGG + tig0017882:7846-7865 None:intergenic 45.0%
TACATAGCCATACTAGCTGG+TGG + tig0017882:7847-7866 None:intergenic 45.0%
CCATACATAGCCATACTAGC+TGG + tig0017882:7850-7869 None:intergenic 45.0%
CCAGCTAGTATGGCTATGTA+TGG - tig0017882:7847-7866 Msa1362480:intron 45.0%
GTAACCAAAACAGCCCTTCT+TGG - tig0017882:7871-7890 Msa1362480:intron 45.0%
GACTTTGGTAAGGCCAAGAA+GGG + tig0017882:7887-7906 None:intergenic 45.0%
!! CTTCTTGGCCTTACCAAAGT+CGG - tig0017882:7886-7905 Msa1362480:intron 45.0%
TACACAACACAGGAGATTCG+AGG + tig0017882:8150-8169 None:intergenic 45.0%
ACTTGGTACAACCGAAGACA+TGG - tig0017882:8425-8444 Msa1362480:intron 45.0%
CTTGGTACAACCGAAGACAT+GGG - tig0017882:8426-8445 Msa1362480:intron 45.0%
AATGGAAGCTACAGTCTCGA+TGG + tig0017882:8528-8547 None:intergenic 45.0%
ATCGTGACTGCTTCAACACA+GGG - tig0017882:6673-6692 Msa1362480:three_prime_UTR 45.0%
ACTGCTTCAACACAGGGAAT+TGG - tig0017882:6679-6698 Msa1362480:three_prime_UTR 45.0%
CAAACCAAGTCTCTCAGCAA+TGG + tig0017882:6710-6729 None:intergenic 45.0%
! CATTGCTGAGAGACTTGGTT+TGG - tig0017882:6708-6727 Msa1362480:three_prime_UTR 45.0%
TGTTATCTCTTCTCGCAGAC+AGG - tig0017882:6744-6763 Msa1362480:CDS 45.0%
! AAGAACTGGACTTGGTAACC+TGG + tig0017882:7209-7228 None:intergenic 45.0%
AGAAGGATTTGCAGCAGCAT+TGG + tig0017882:7475-7494 None:intergenic 45.0%
CGAATCTTGGGTTTGCAGAA+TGG + tig0017882:7505-7524 None:intergenic 45.0%
CTTGTCAAGGACCGAATCTT+GGG + tig0017882:7517-7536 None:intergenic 45.0%
ACTTGTCAAGGACCGAATCT+TGG + tig0017882:7518-7537 None:intergenic 45.0%
TTATCACCCACCAGCTAGTA+TGG - tig0017882:7837-7856 Msa1362480:intron 45.0%
ACATAGCCATACTAGCTGGT+GGG + tig0017882:7846-7865 None:intergenic 45.0%
TACATAGCCATACTAGCTGG+TGG + tig0017882:7847-7866 None:intergenic 45.0%
CCATACATAGCCATACTAGC+TGG + tig0017882:7850-7869 None:intergenic 45.0%
CCAGCTAGTATGGCTATGTA+TGG - tig0017882:7847-7866 Msa1362480:intron 45.0%
GTAACCAAAACAGCCCTTCT+TGG - tig0017882:7871-7890 Msa1362480:intron 45.0%
GACTTTGGTAAGGCCAAGAA+GGG + tig0017882:7887-7906 None:intergenic 45.0%
!! CTTCTTGGCCTTACCAAAGT+CGG - tig0017882:7886-7905 Msa1362480:intron 45.0%
TACACAACACAGGAGATTCG+AGG + tig0017882:8150-8169 None:intergenic 45.0%
ACTTGGTACAACCGAAGACA+TGG - tig0017882:8425-8444 Msa1362480:intron 45.0%
CTTGGTACAACCGAAGACAT+GGG - tig0017882:8426-8445 Msa1362480:intron 45.0%
AATGGAAGCTACAGTCTCGA+TGG + tig0017882:8528-8547 None:intergenic 45.0%
GATCGTGACTGCTTCAACAC+AGG - tig0017882:6672-6691 Msa1362480:three_prime_UTR 50.0%
!! GCTGAGAGACTTGGTTTGGA+AGG - tig0017882:6712-6731 Msa1362480:exon 50.0%
GCTGAAAAACTGAGGGCCAA+AGG - tig0017882:6965-6984 Msa1362480:intron 50.0%
CAGCTGGTAAGAACTGGACT+TGG + tig0017882:7217-7236 None:intergenic 50.0%
CAAGTCCAGTTCTTACCAGC+TGG - tig0017882:7215-7234 Msa1362480:CDS 50.0%
ACTGTCCAGCTGGTAAGAAC+TGG + tig0017882:7223-7242 None:intergenic 50.0%
GAAGAACCCTTCGGCAAGTA+TGG + tig0017882:7790-7809 None:intergenic 50.0%
! AAGGCCAAGAAGGGCTGTTT+TGG + tig0017882:7878-7897 None:intergenic 50.0%
CGACTTTGGTAAGGCCAAGA+AGG + tig0017882:7888-7907 None:intergenic 50.0%
!! GGCAAGTACCGACTTTGGTA+AGG + tig0017882:7897-7916 None:intergenic 50.0%
!! TGGAAGGCAAGTACCGACTT+TGG + tig0017882:7902-7921 None:intergenic 50.0%
! CGTGTAAACTGTGTTGCTCC+TGG - tig0017882:8038-8057 Msa1362480:intron 50.0%
CACAGGAGATTCGAGGAAAG+AGG + tig0017882:8143-8162 None:intergenic 50.0%
TGTAGCAGCACCCATGTCTT+CGG + tig0017882:8439-8458 None:intergenic 50.0%
!!! GGGTGCTGCTACAGCTTTTT+TGG - tig0017882:8446-8465 Msa1362480:intron 50.0%
GATCGTGACTGCTTCAACAC+AGG - tig0017882:6672-6691 Msa1362480:three_prime_UTR 50.0%
!! GCTGAGAGACTTGGTTTGGA+AGG - tig0017882:6712-6731 Msa1362480:exon 50.0%
GCTGAAAAACTGAGGGCCAA+AGG - tig0017882:6965-6984 Msa1362480:intron 50.0%
CAGCTGGTAAGAACTGGACT+TGG + tig0017882:7217-7236 None:intergenic 50.0%
CAAGTCCAGTTCTTACCAGC+TGG - tig0017882:7215-7234 Msa1362480:CDS 50.0%
ACTGTCCAGCTGGTAAGAAC+TGG + tig0017882:7223-7242 None:intergenic 50.0%
GAAGAACCCTTCGGCAAGTA+TGG + tig0017882:7790-7809 None:intergenic 50.0%
! AAGGCCAAGAAGGGCTGTTT+TGG + tig0017882:7878-7897 None:intergenic 50.0%
CGACTTTGGTAAGGCCAAGA+AGG + tig0017882:7888-7907 None:intergenic 50.0%
!! GGCAAGTACCGACTTTGGTA+AGG + tig0017882:7897-7916 None:intergenic 50.0%
!! TGGAAGGCAAGTACCGACTT+TGG + tig0017882:7902-7921 None:intergenic 50.0%
! CGTGTAAACTGTGTTGCTCC+TGG - tig0017882:8038-8057 Msa1362480:intron 50.0%
CACAGGAGATTCGAGGAAAG+AGG + tig0017882:8143-8162 None:intergenic 50.0%
TGTAGCAGCACCCATGTCTT+CGG + tig0017882:8439-8458 None:intergenic 50.0%
!!! GGGTGCTGCTACAGCTTTTT+TGG - tig0017882:8446-8465 Msa1362480:intron 50.0%
GACAACCGAACCTAAGCGTG+TGG - tig0017882:6590-6609 Msa1362480:three_prime_UTR 55.0%
CACAGCCACACGCTTAGGTT+CGG + tig0017882:6598-6617 None:intergenic 55.0%
ACCTAAGCGTGTGGCTGTGT+CGG - tig0017882:6599-6618 Msa1362480:three_prime_UTR 55.0%
TGTGGCTGTGTCGGATTCGA+AGG - tig0017882:6608-6627 Msa1362480:three_prime_UTR 55.0%
TGCAGCTCCATACTTGCCGA+AGG - tig0017882:7780-7799 Msa1362480:CDS 55.0%
GCAGCTCCATACTTGCCGAA+GGG - tig0017882:7781-7800 Msa1362480:CDS 55.0%
GACAACCGAACCTAAGCGTG+TGG - tig0017882:6590-6609 Msa1362480:three_prime_UTR 55.0%
CACAGCCACACGCTTAGGTT+CGG + tig0017882:6598-6617 None:intergenic 55.0%
ACCTAAGCGTGTGGCTGTGT+CGG - tig0017882:6599-6618 Msa1362480:three_prime_UTR 55.0%
TGTGGCTGTGTCGGATTCGA+AGG - tig0017882:6608-6627 Msa1362480:three_prime_UTR 55.0%
TGCAGCTCCATACTTGCCGA+AGG - tig0017882:7780-7799 Msa1362480:CDS 55.0%
GCAGCTCCATACTTGCCGAA+GGG - tig0017882:7781-7800 Msa1362480:CDS 55.0%
TCCGACACAGCCACACGCTT+AGG + tig0017882:6603-6622 None:intergenic 60.0%
CAGTCTCGATGGCATTCCGC+CGG + tig0017882:8517-8536 None:intergenic 60.0%
TCCGACACAGCCACACGCTT+AGG + tig0017882:6603-6622 None:intergenic 60.0%
CAGTCTCGATGGCATTCCGC+CGG + tig0017882:8517-8536 None:intergenic 60.0%
GTAGGCCCTGGCTGCTGAGA+TGG - tig0017882:8004-8023 Msa1362480:intron 65.0%
AGGGGCCATCTCAGCAGCCA+GGG + tig0017882:8012-8031 None:intergenic 65.0%
TAGGGGCCATCTCAGCAGCC+AGG + tig0017882:8013-8032 None:intergenic 65.0%
GTAGGCCCTGGCTGCTGAGA+TGG - tig0017882:8004-8023 Msa1362480:intron 65.0%
AGGGGCCATCTCAGCAGCCA+GGG + tig0017882:8012-8031 None:intergenic 65.0%
TAGGGGCCATCTCAGCAGCC+AGG + tig0017882:8013-8032 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0017882 gene 6476 8792 6476 ID=Msa1362480;Name=Msa1362480
tig0017882 mRNA 6476 8792 6476 ID=Msa1362480-mRNA-1;Parent=Msa1362480;Name=Msa1362480-mRNA-1;_AED=0.01;_eAED=0.01;_QI=161|0.8|0.83|1|1|1|6|253|250
tig0017882 exon 6476 6878 6476 ID=Msa1362480-mRNA-1:exon:13034;Parent=Msa1362480-mRNA-1
tig0017882 exon 7159 7260 7159 ID=Msa1362480-mRNA-1:exon:13033;Parent=Msa1362480-mRNA-1
tig0017882 exon 7365 7490 7365 ID=Msa1362480-mRNA-1:exon:13032;Parent=Msa1362480-mRNA-1
tig0017882 exon 7690 7824 7690 ID=Msa1362480-mRNA-1:exon:13031;Parent=Msa1362480-mRNA-1
tig0017882 exon 8211 8321 8211 ID=Msa1362480-mRNA-1:exon:13030;Parent=Msa1362480-mRNA-1
tig0017882 exon 8503 8792 8503 ID=Msa1362480-mRNA-1:exon:13029;Parent=Msa1362480-mRNA-1
tig0017882 five_prime_UTR 8632 8792 8632 ID=Msa1362480-mRNA-1:five_prime_utr;Parent=Msa1362480-mRNA-1
tig0017882 CDS 8503 8631 8503 ID=Msa1362480-mRNA-1:cds;Parent=Msa1362480-mRNA-1
tig0017882 CDS 8211 8321 8211 ID=Msa1362480-mRNA-1:cds;Parent=Msa1362480-mRNA-1
tig0017882 CDS 7690 7824 7690 ID=Msa1362480-mRNA-1:cds;Parent=Msa1362480-mRNA-1
tig0017882 CDS 7365 7490 7365 ID=Msa1362480-mRNA-1:cds;Parent=Msa1362480-mRNA-1
tig0017882 CDS 7159 7260 7159 ID=Msa1362480-mRNA-1:cds;Parent=Msa1362480-mRNA-1
tig0017882 CDS 6729 6878 6729 ID=Msa1362480-mRNA-1:cds;Parent=Msa1362480-mRNA-1
tig0017882 three_prime_UTR 6476 6728 6476 ID=Msa1362480-mRNA-1:three_prime_utr;Parent=Msa1362480-mRNA-1
Gene Sequence

>Msa1362480

ATGGAAATTCCAAAGAGATTCAAAGGAAAGGTTGCGATCGTGACTGCTTCAACACAGGGAATTGGTTTTACCATTGCTGAGAGACTTGGTTTGGAAGGTGCTTCTGTTGTTATCTCTTCTCGCAGACAGAAAAATGTTGATGTAGCTGCTGAAAAACTGAGGGCCAAAGGAATTGATGTATTTGCAGTTGTTTGCCATGTCTCAAATGCTCTACAAAGGAAGGATTTGATTGACAAAACTAAGTATGGAAAGATAGATGTTGTTGTGTCCAATGCTGCTGCAAATCCTTCTGTTGATTCCATTCTGCAAACCCAAGATTCGGTCCTTGACAAGTTATGGGAGATAAATGTCAAAGCCACTATACTTCTTCTGAAGGATGCAGCTCCATACTTGCCGAAGGGTTCTTCTGTTGTTATCATTTCATCGATCGCTGGTTATCACCCACCAGCTAGTATGGCTATGTATGGAGTAACCAAAACAGCCCTTCTTGGCCTTACCAAAGCCCTGGCTGCTGAGATGGCCCCTAAAACTCGTGTAAACTGTGTTGCTCCTGGTTTTGTACCAACTAATTTTGCTTCATTCATCACCAGTAATTCTGCTATGAGAGAAGAGCTTGAAGCAAAGACATTACTTGGAAGACTTGGTACAACCGAAGACATGGGTGCTGCTACAGCTTTTTTGGCATCTGATGATGCGTCATATATAACAGGAGAAACTATAGTAGTTTCCGGCGGAATGCCATCGAGACTGTAG
Protein sequence

>Msa1362480

MEIPKRFKGKVAIVTASTQGIGFTIAERLGLEGASVVISSRRQKNVDVAAEKLRAKGIDVFAVVCHVSNALQRKDLIDKTKYGKIDVVVSNAAANPSVDSILQTQDSVLDKLWEINVKATILLLKDAAPYLPKGSSVVIISSIAGYHPPASMAMYGVTKTALLGLTKALAAEMAPKTRVNCVAPGFVPTNFASFITSNSAMREELEAKTLLGRLGTTEDMGAATAFLASDDASYITGETIVVSGGMPSRL*