Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1304310 | sp|O48780|KCS11_ARATH | 67.063 | 252 | 64 | 3 | 63 | 299 | 43 | 290 | 1.36e-111 | 335 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1304310 | G7JU77 | 84.232 | 241 | 30 | 3 | 63 | 299 | 34 | 270 | 1.61e-133 | 397 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1261550 | Msa1304310 | 0.837627 | 4.648796e-57 | -8.615850e-47 |
Msa1304310 | Msa1304760 | 0.851655 | 7.702896e-61 | -8.615850e-47 |
Msa1304310 | Msa1331230 | 0.853824 | 1.850693e-61 | -8.615850e-47 |
Msa1213640 | Msa1304310 | 0.849494 | 3.119302e-60 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1304310 | MtrunA17_Chr4g0063011 | 80.556 | 252 | 30 | 3 | 63 | 299 | 34 | 281 | 1.12e-136 | 395 |
Msa1304310 | MtrunA17_Chr1g0188051 | 59.833 | 239 | 77 | 3 | 76 | 299 | 59 | 293 | 2.01e-93 | 286 |
Msa1304310 | MtrunA17_Chr1g0166191 | 56.977 | 258 | 88 | 4 | 57 | 299 | 50 | 299 | 9.90e-92 | 281 |
Msa1304310 | MtrunA17_Chr4g0035081 | 49.412 | 255 | 106 | 5 | 64 | 299 | 40 | 290 | 9.64e-79 | 248 |
Msa1304310 | MtrunA17_Chr7g0250651 | 75.352 | 142 | 33 | 1 | 63 | 202 | 45 | 186 | 8.33e-73 | 222 |
Msa1304310 | MtrunA17_Chr7g0276251 | 51.316 | 228 | 92 | 3 | 87 | 299 | 89 | 312 | 3.67e-69 | 223 |
Msa1304310 | MtrunA17_Chr2g0306781 | 71.250 | 160 | 29 | 2 | 153 | 299 | 31 | 186 | 1.43e-67 | 216 |
Msa1304310 | MtrunA17_Chr3g0136561 | 41.322 | 242 | 121 | 5 | 73 | 297 | 442 | 679 | 1.40e-59 | 204 |
Msa1304310 | MtrunA17_Chr5g0423521 | 43.320 | 247 | 118 | 5 | 68 | 299 | 39 | 278 | 4.24e-58 | 194 |
Msa1304310 | MtrunA17_Chr6g0480561 | 48.416 | 221 | 95 | 4 | 94 | 299 | 38 | 254 | 5.39e-57 | 190 |
Msa1304310 | MtrunA17_Chr1g0209881 | 47.005 | 217 | 95 | 5 | 99 | 299 | 66 | 278 | 3.42e-56 | 189 |
Msa1304310 | MtrunA17_Chr2g0282281 | 40.175 | 229 | 116 | 5 | 88 | 299 | 78 | 302 | 6.71e-44 | 156 |
Msa1304310 | MtrunA17_Chr4g0026861 | 41.117 | 197 | 96 | 4 | 81 | 261 | 22 | 214 | 3.64e-37 | 131 |
Msa1304310 | MtrunA17_Chr2g0277841 | 38.660 | 194 | 109 | 4 | 116 | 299 | 45 | 238 | 1.82e-36 | 135 |
Msa1304310 | MtrunA17_Chr2g0295781 | 36.744 | 215 | 117 | 4 | 100 | 299 | 27 | 237 | 1.22e-35 | 133 |
Msa1304310 | MtrunA17_Chr6g0461621 | 36.975 | 238 | 120 | 8 | 54 | 271 | 2 | 229 | 1.82e-35 | 127 |
Msa1304310 | MtrunA17_Chr3g0115021 | 37.500 | 200 | 113 | 3 | 112 | 299 | 74 | 273 | 1.60e-32 | 125 |
Msa1304310 | MtrunA17_Chr3g0115041 | 37.500 | 200 | 113 | 3 | 112 | 299 | 74 | 273 | 1.61e-32 | 125 |
Msa1304310 | MtrunA17_Chr4g0026801 | 45.255 | 137 | 72 | 2 | 81 | 214 | 22 | 158 | 4.83e-32 | 116 |
Msa1304310 | MtrunA17_Chr1g0204301 | 37.000 | 200 | 107 | 3 | 115 | 299 | 77 | 272 | 1.00e-31 | 123 |
Msa1304310 | MtrunA17_Chr7g0250661 | 88.889 | 54 | 6 | 0 | 246 | 299 | 23 | 76 | 2.63e-25 | 102 |
Msa1304310 | MtrunA17_Chr1g0212951 | 30.876 | 217 | 128 | 6 | 99 | 299 | 13 | 223 | 1.29e-24 | 103 |
Msa1304310 | MtrunA17_Chr6g0469631 | 33.831 | 201 | 105 | 4 | 119 | 299 | 80 | 272 | 5.62e-24 | 101 |
Msa1304310 | MtrunA17_Chr4g0030581 | 31.343 | 201 | 124 | 6 | 111 | 298 | 22 | 221 | 2.41e-23 | 99.4 |
Msa1304310 | MtrunA17_Chr4g0030601 | 31.188 | 202 | 125 | 6 | 111 | 299 | 22 | 222 | 6.24e-23 | 98.2 |
Msa1304310 | MtrunA17_Chr2g0327721 | 30.198 | 202 | 115 | 6 | 116 | 298 | 27 | 221 | 1.71e-22 | 97.1 |
Msa1304310 | MtrunA17_Chr4g0030591 | 29.064 | 203 | 118 | 7 | 116 | 299 | 27 | 222 | 6.92e-21 | 92.4 |
Msa1304310 | MtrunA17_Chr7g0276241 | 70.370 | 54 | 16 | 0 | 246 | 299 | 23 | 76 | 1.22e-18 | 84.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1304310 | AT2G26640.1 | 67.063 | 252 | 64 | 3 | 63 | 299 | 43 | 290 | 1.38e-112 | 335 |
Msa1304310 | AT5G43760.1 | 56.904 | 239 | 84 | 4 | 76 | 299 | 67 | 301 | 1.61e-85 | 266 |
Msa1304310 | AT1G04220.1 | 53.846 | 260 | 100 | 5 | 56 | 299 | 40 | 295 | 4.96e-85 | 265 |
Msa1304310 | AT2G16280.1 | 50.379 | 264 | 106 | 6 | 55 | 299 | 41 | 298 | 1.93e-81 | 255 |
Msa1304310 | AT1G19440.1 | 49.621 | 264 | 108 | 6 | 55 | 299 | 45 | 302 | 1.08e-76 | 243 |
Msa1304310 | AT1G01120.1 | 47.934 | 242 | 105 | 4 | 75 | 299 | 75 | 312 | 4.00e-70 | 226 |
Msa1304310 | AT4G34510.1 | 42.491 | 273 | 119 | 7 | 45 | 299 | 20 | 272 | 1.24e-65 | 213 |
Msa1304310 | AT1G68530.2 | 45.064 | 233 | 109 | 4 | 82 | 299 | 51 | 279 | 3.27e-62 | 201 |
Msa1304310 | AT2G26250.1 | 43.860 | 228 | 108 | 4 | 86 | 297 | 86 | 309 | 1.43e-60 | 202 |
Msa1304310 | AT1G68530.1 | 45.064 | 233 | 109 | 4 | 82 | 299 | 51 | 279 | 2.42e-60 | 200 |
Msa1304310 | AT4G34520.1 | 41.509 | 265 | 122 | 5 | 64 | 299 | 17 | 277 | 2.03e-56 | 190 |
Msa1304310 | AT1G25450.1 | 43.348 | 233 | 113 | 3 | 82 | 299 | 46 | 274 | 2.36e-56 | 189 |
Msa1304310 | AT2G46720.1 | 49.246 | 199 | 90 | 4 | 112 | 299 | 52 | 250 | 1.20e-55 | 187 |
Msa1304310 | AT2G15090.1 | 42.966 | 263 | 106 | 7 | 69 | 299 | 17 | 267 | 4.92e-55 | 186 |
Msa1304310 | AT4G34250.1 | 42.063 | 252 | 121 | 5 | 69 | 299 | 28 | 275 | 6.48e-54 | 183 |
Msa1304310 | AT3G10280.1 | 47.980 | 198 | 87 | 4 | 112 | 299 | 52 | 243 | 9.55e-54 | 182 |
Msa1304310 | AT3G52160.1 | 40.385 | 208 | 105 | 3 | 107 | 299 | 75 | 278 | 1.17e-42 | 152 |
Msa1304310 | AT1G71160.1 | 35.023 | 217 | 122 | 4 | 98 | 299 | 25 | 237 | 4.03e-36 | 135 |
Msa1304310 | AT3G52160.2 | 41.566 | 166 | 80 | 2 | 147 | 299 | 4 | 165 | 1.62e-33 | 125 |
Msa1304310 | AT5G49070.2 | 33.962 | 212 | 128 | 4 | 99 | 299 | 31 | 241 | 2.77e-32 | 122 |
Msa1304310 | AT5G49070.1 | 33.962 | 212 | 128 | 4 | 99 | 299 | 31 | 241 | 2.94e-31 | 122 |
Msa1304310 | AT5G04530.1 | 34.500 | 200 | 103 | 7 | 121 | 299 | 34 | 226 | 1.87e-24 | 102 |
Msa1304310 | AT2G28630.2 | 33.333 | 201 | 106 | 8 | 118 | 298 | 29 | 221 | 4.63e-23 | 99.0 |
Msa1304310 | AT2G28630.1 | 33.333 | 201 | 106 | 8 | 118 | 298 | 29 | 221 | 4.63e-23 | 99.0 |
Msa1304310 | AT1G07720.2 | 29.146 | 199 | 121 | 5 | 116 | 298 | 70 | 264 | 3.25e-21 | 94.0 |
Msa1304310 | AT1G07720.1 | 29.146 | 199 | 121 | 5 | 116 | 298 | 27 | 221 | 4.37e-21 | 93.2 |
Find 55 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCACATTGAATTGGTATTT+TGG | 0.124443 | 8_3:+67550133 | Msa1304310:CDS |
GGAGCATCTACAATACAATT+TGG | 0.261765 | 8_3:+67549541 | Msa1304310:CDS |
GTGCACGAAAAGGAAATTTA+TGG | 0.264464 | 8_3:+67549682 | Msa1304310:CDS |
ACTGGGATCTCTGGTGGGTT+TGG | 0.267868 | 8_3:+67548805 | Msa1304310:CDS |
ATGACCAATGCATAGGAATT+AGG | 0.295997 | 8_3:-67550097 | None:intergenic |
ATCAGAATTCCTATATCTTT+AGG | 0.301992 | 8_3:-67549914 | None:intergenic |
TTTCTAGCTTCTTTCATTGA+AGG | 0.316291 | 8_3:-67549830 | None:intergenic |
GCTTCTTTCATTGAAGGATT+AGG | 0.319754 | 8_3:-67549824 | None:intergenic |
TCAACAAGGTACACCGGTTT+CGG | 0.345198 | 8_3:-67549626 | None:intergenic |
GTGCACTTACGCGATTCTTC+AGG | 0.355117 | 8_3:-67549665 | None:intergenic |
TCTGGTGGGTTTGGTCTTCA+AGG | 0.363067 | 8_3:+67548814 | Msa1304310:CDS |
TTCTAATTGTTTGTTTCGAA+TGG | 0.382081 | 8_3:+67550177 | Msa1304310:CDS |
CCCAAATATCATAAAAGTCT+TGG | 0.400754 | 8_3:-67549520 | None:intergenic |
ACAGTAAAGCCTAAAGATAT+AGG | 0.416419 | 8_3:+67549905 | Msa1304310:CDS |
AATCCACAATGCATTCGTTC+AGG | 0.417121 | 8_3:-67548959 | None:intergenic |
TCTCTCTTGGAAGACATTAC+TGG | 0.428776 | 8_3:+67548781 | Msa1304310:CDS |
TCTAATTGTTTGTTTCGAAT+GGG | 0.432398 | 8_3:+67550178 | Msa1304310:CDS |
TGGAGAATATCACATTGAAT+TGG | 0.437805 | 8_3:+67550125 | Msa1304310:CDS |
TTGAAGATAGCGACGGAGTT+GGG | 0.440924 | 8_3:-67549958 | None:intergenic |
ATTACTGGCACTGGGATCTC+TGG | 0.447923 | 8_3:+67548796 | Msa1304310:CDS |
CGAAAGATTCTTGAGAGATC+GGG | 0.455522 | 8_3:+67549755 | Msa1304310:CDS |
TTGGAAGACATTACTGGCAC+TGG | 0.465192 | 8_3:+67548787 | Msa1304310:CDS |
TTCTTGAGAGATCGGGACTC+GGG | 0.466115 | 8_3:+67549762 | Msa1304310:CDS |
ATTCTTGAGAGATCGGGACT+CGG | 0.466508 | 8_3:+67549761 | Msa1304310:CDS |
GGAAAGTTAAGAACAGCCTC+TGG | 0.468115 | 8_3:-67549800 | None:intergenic |
GCGAAAGATTCTTGAGAGAT+CGG | 0.468284 | 8_3:+67549754 | Msa1304310:CDS |
CTGGCACTGGGATCTCTGGT+GGG | 0.510740 | 8_3:+67548800 | Msa1304310:CDS |
ACTGGCACTGGGATCTCTGG+TGG | 0.512292 | 8_3:+67548799 | Msa1304310:CDS |
ATTGAAGATAGCGACGGAGT+TGG | 0.522625 | 8_3:-67549959 | None:intergenic |
GTCAATCATTACAAGCTTCG+AGG | 0.523795 | 8_3:+67549986 | Msa1304310:CDS |
AATATCATAAAAGTCTTGGA+TGG | 0.525987 | 8_3:-67549516 | None:intergenic |
CTTACTAAATAGCTCATCAA+TGG | 0.525994 | 8_3:-67549879 | None:intergenic |
CTATGCATTGGTCATTAGCA+TGG | 0.531088 | 8_3:+67550105 | Msa1304310:CDS |
CATAGGAATTAGGATTGGCC+TGG | 0.532315 | 8_3:-67550087 | None:intergenic |
CAATCCTAATTCCTATGCAT+TGG | 0.538699 | 8_3:+67550093 | Msa1304310:CDS |
AATCGCGTAAGTGCACGAAA+AGG | 0.539987 | 8_3:+67549672 | Msa1304310:CDS |
CTTCCTGAACGAATGCATTG+TGG | 0.540223 | 8_3:+67548956 | Msa1304310:CDS |
TCTTTCATTGAAGGATTAGG+AGG | 0.545431 | 8_3:-67549821 | None:intergenic |
GAAGCTGAGACTGTGATGTT+CGG | 0.565891 | 8_3:+67549854 | Msa1304310:CDS |
TCAATCATTACAAGCTTCGA+GGG | 0.569665 | 8_3:+67549987 | Msa1304310:CDS |
AATTGTTTGTTTCGAATGGG+AGG | 0.571309 | 8_3:+67550181 | Msa1304310:CDS |
AAATTGGAAAACATGGGAAG+AGG | 0.571781 | 8_3:-67548878 | None:intergenic |
AATATAAAGAGCTACAACCT+AGG | 0.575611 | 8_3:+67550010 | Msa1304310:CDS |
TCTTGCTAAAGATCTTCTCC+AGG | 0.579124 | 8_3:+67550069 | Msa1304310:CDS |
CATTGTGGATTTATACACAA+AGG | 0.580100 | 8_3:+67548971 | Msa1304310:CDS |
CAATGCATAGGAATTAGGAT+TGG | 0.604720 | 8_3:-67550092 | None:intergenic |
TGGAAGACATTACTGGCACT+GGG | 0.608170 | 8_3:+67548788 | Msa1304310:CDS |
TCTTGAGAGATCGGGACTCG+GGG | 0.615846 | 8_3:+67549763 | Msa1304310:CDS |
CATGCTAATGACCAATGCAT+AGG | 0.618448 | 8_3:-67550104 | None:intergenic |
TATATCTTTAGGCTTTACTG+TGG | 0.620510 | 8_3:-67549903 | None:intergenic |
GGAATCTACTTATCTTCCAG+AGG | 0.644232 | 8_3:+67549784 | Msa1304310:CDS |
AAAGCGTGGACAGGAAAACA+AGG | 0.654849 | 8_3:-67549589 | None:intergenic |
ACAATCATTGAAGATAGCGA+CGG | 0.668618 | 8_3:-67549965 | None:intergenic |
GAGAAATCAACAAGGTACAC+CGG | 0.678354 | 8_3:-67549632 | None:intergenic |
TGTAACATGAGAAATCAACA+AGG | 0.794037 | 8_3:-67549640 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTAATAATCAACAAAAA+TGG | - | chr8_3:67549121-67549140 | None:intergenic | 10.0% |
!! | AAATTAATAATCAACAAAAA+TGG | - | chr8_3:67549121-67549140 | None:intergenic | 10.0% |
!!! | GATTACATATTTTCTTTTAA+TGG | - | chr8_3:67549280-67549299 | None:intergenic | 15.0% |
!!! | GATTACATATTTTCTTTTAA+TGG | - | chr8_3:67549280-67549299 | None:intergenic | 15.0% |
!! | AATGAAAAATTGGAAAACAT+GGG | - | chr8_3:67548887-67548906 | None:intergenic | 20.0% |
!! | TAATGAAAAATTGGAAAACA+TGG | - | chr8_3:67548888-67548907 | None:intergenic | 20.0% |
!!! | ATTGATTTAACTTTTGAACA+GGG | + | chr8_3:67549307-67549326 | Msa1304310:intron | 20.0% |
!! | AAATTGAAGTATGTTAAACT+TGG | + | chr8_3:67549410-67549429 | Msa1304310:intron | 20.0% |
!! | AATGAAAAATTGGAAAACAT+GGG | - | chr8_3:67548887-67548906 | None:intergenic | 20.0% |
!! | TAATGAAAAATTGGAAAACA+TGG | - | chr8_3:67548888-67548907 | None:intergenic | 20.0% |
!!! | ATTGATTTAACTTTTGAACA+GGG | + | chr8_3:67549307-67549326 | Msa1304310:intron | 20.0% |
!! | AAATTGAAGTATGTTAAACT+TGG | + | chr8_3:67549410-67549429 | Msa1304310:intron | 20.0% |
! | GTTAATTTACATGCATTGAA+TGG | - | chr8_3:67549099-67549118 | None:intergenic | 25.0% |
! | GTAGAAATTGTTACTGAAAA+TGG | + | chr8_3:67549153-67549172 | Msa1304310:intron | 25.0% |
!!! | GATTGATTTAACTTTTGAAC+AGG | + | chr8_3:67549306-67549325 | Msa1304310:intron | 25.0% |
! | TTAACAGATTTCTTGAAATC+AGG | - | chr8_3:67549392-67549411 | None:intergenic | 25.0% |
! | AATATCATAAAAGTCTTGGA+TGG | - | chr8_3:67549519-67549538 | None:intergenic | 25.0% |
!! | TCCAAGACTTTTATGATATT+TGG | + | chr8_3:67549519-67549538 | Msa1304310:CDS | 25.0% |
!! | CCAAGACTTTTATGATATTT+GGG | + | chr8_3:67549520-67549539 | Msa1304310:CDS | 25.0% |
! | ATCAGAATTCCTATATCTTT+AGG | - | chr8_3:67549917-67549936 | None:intergenic | 25.0% |
!! | ATCACATTGAATTGGTATTT+TGG | + | chr8_3:67550133-67550152 | Msa1304310:CDS | 25.0% |
! | TTCTAATTGTTTGTTTCGAA+TGG | + | chr8_3:67550177-67550196 | Msa1304310:CDS | 25.0% |
! | TCTAATTGTTTGTTTCGAAT+GGG | + | chr8_3:67550178-67550197 | Msa1304310:CDS | 25.0% |
! | GTTAATTTACATGCATTGAA+TGG | - | chr8_3:67549099-67549118 | None:intergenic | 25.0% |
! | GTAGAAATTGTTACTGAAAA+TGG | + | chr8_3:67549153-67549172 | Msa1304310:intron | 25.0% |
!!! | GATTGATTTAACTTTTGAAC+AGG | + | chr8_3:67549306-67549325 | Msa1304310:intron | 25.0% |
! | TTAACAGATTTCTTGAAATC+AGG | - | chr8_3:67549392-67549411 | None:intergenic | 25.0% |
! | AATATCATAAAAGTCTTGGA+TGG | - | chr8_3:67549519-67549538 | None:intergenic | 25.0% |
!! | TCCAAGACTTTTATGATATT+TGG | + | chr8_3:67549519-67549538 | Msa1304310:CDS | 25.0% |
!! | CCAAGACTTTTATGATATTT+GGG | + | chr8_3:67549520-67549539 | Msa1304310:CDS | 25.0% |
! | ATCAGAATTCCTATATCTTT+AGG | - | chr8_3:67549917-67549936 | None:intergenic | 25.0% |
!! | ATCACATTGAATTGGTATTT+TGG | + | chr8_3:67550133-67550152 | Msa1304310:CDS | 25.0% |
! | TTCTAATTGTTTGTTTCGAA+TGG | + | chr8_3:67550177-67550196 | Msa1304310:CDS | 25.0% |
! | TCTAATTGTTTGTTTCGAAT+GGG | + | chr8_3:67550178-67550197 | Msa1304310:CDS | 25.0% |
! | AAGGTACAATTTTGTGAACT+GGG | + | chr8_3:67548833-67548852 | Msa1304310:CDS | 30.0% |
TGCAGTGAGTAATGAAAAAT+TGG | - | chr8_3:67548897-67548916 | None:intergenic | 30.0% | |
CATTGTGGATTTATACACAA+AGG | + | chr8_3:67548971-67548990 | Msa1304310:CDS | 30.0% | |
TACTCAACATGAAAATCAAG+TGG | - | chr8_3:67549076-67549095 | None:intergenic | 30.0% | |
! | GTTACTGAAAATGGATCTTT+TGG | + | chr8_3:67549162-67549181 | Msa1304310:intron | 30.0% |
AATCATGAGCAACAACAAAA+GGG | - | chr8_3:67549254-67549273 | None:intergenic | 30.0% | |
AAATCATGAGCAACAACAAA+AGG | - | chr8_3:67549255-67549274 | None:intergenic | 30.0% | |
TATCACTATCTAATCACTCA+TGG | + | chr8_3:67549434-67549453 | Msa1304310:intron | 30.0% | |
CCCAAATATCATAAAAGTCT+TGG | - | chr8_3:67549523-67549542 | None:intergenic | 30.0% | |
TGTAACATGAGAAATCAACA+AGG | - | chr8_3:67549643-67549662 | None:intergenic | 30.0% | |
! | TAGGATGATCAGTACTTTTA+CGG | + | chr8_3:67549712-67549731 | Msa1304310:intron | 30.0% |
!! | TTTCTAGCTTCTTTCATTGA+AGG | - | chr8_3:67549833-67549852 | None:intergenic | 30.0% |
CTTACTAAATAGCTCATCAA+TGG | - | chr8_3:67549882-67549901 | None:intergenic | 30.0% | |
TATATCTTTAGGCTTTACTG+TGG | - | chr8_3:67549906-67549925 | None:intergenic | 30.0% | |
ACAGTAAAGCCTAAAGATAT+AGG | + | chr8_3:67549905-67549924 | Msa1304310:CDS | 30.0% | |
AATATAAAGAGCTACAACCT+AGG | + | chr8_3:67550010-67550029 | Msa1304310:CDS | 30.0% | |
TGGAGAATATCACATTGAAT+TGG | + | chr8_3:67550125-67550144 | Msa1304310:CDS | 30.0% | |
!! | ATTGGTATTTTGGAAACGAT+CGG | + | chr8_3:67550143-67550162 | Msa1304310:CDS | 30.0% |
! | AAGGTACAATTTTGTGAACT+GGG | + | chr8_3:67548833-67548852 | Msa1304310:CDS | 30.0% |
TGCAGTGAGTAATGAAAAAT+TGG | - | chr8_3:67548897-67548916 | None:intergenic | 30.0% | |
CATTGTGGATTTATACACAA+AGG | + | chr8_3:67548971-67548990 | Msa1304310:CDS | 30.0% | |
TACTCAACATGAAAATCAAG+TGG | - | chr8_3:67549076-67549095 | None:intergenic | 30.0% | |
! | GTTACTGAAAATGGATCTTT+TGG | + | chr8_3:67549162-67549181 | Msa1304310:intron | 30.0% |
AATCATGAGCAACAACAAAA+GGG | - | chr8_3:67549254-67549273 | None:intergenic | 30.0% | |
AAATCATGAGCAACAACAAA+AGG | - | chr8_3:67549255-67549274 | None:intergenic | 30.0% | |
TATCACTATCTAATCACTCA+TGG | + | chr8_3:67549434-67549453 | Msa1304310:intron | 30.0% | |
CCCAAATATCATAAAAGTCT+TGG | - | chr8_3:67549523-67549542 | None:intergenic | 30.0% | |
TGTAACATGAGAAATCAACA+AGG | - | chr8_3:67549643-67549662 | None:intergenic | 30.0% | |
! | TAGGATGATCAGTACTTTTA+CGG | + | chr8_3:67549712-67549731 | Msa1304310:intron | 30.0% |
!! | TTTCTAGCTTCTTTCATTGA+AGG | - | chr8_3:67549833-67549852 | None:intergenic | 30.0% |
CTTACTAAATAGCTCATCAA+TGG | - | chr8_3:67549882-67549901 | None:intergenic | 30.0% | |
TATATCTTTAGGCTTTACTG+TGG | - | chr8_3:67549906-67549925 | None:intergenic | 30.0% | |
ACAGTAAAGCCTAAAGATAT+AGG | + | chr8_3:67549905-67549924 | Msa1304310:CDS | 30.0% | |
AATATAAAGAGCTACAACCT+AGG | + | chr8_3:67550010-67550029 | Msa1304310:CDS | 30.0% | |
TGGAGAATATCACATTGAAT+TGG | + | chr8_3:67550125-67550144 | Msa1304310:CDS | 30.0% | |
!! | ATTGGTATTTTGGAAACGAT+CGG | + | chr8_3:67550143-67550162 | Msa1304310:CDS | 30.0% |
! | CAAGGTACAATTTTGTGAAC+TGG | + | chr8_3:67548832-67548851 | Msa1304310:CDS | 35.0% |
AAATTGGAAAACATGGGAAG+AGG | - | chr8_3:67548881-67548900 | None:intergenic | 35.0% | |
! | ACTGAAAATGGATCTTTTGG+AGG | + | chr8_3:67549165-67549184 | Msa1304310:intron | 35.0% |
! | CTGAAAATGGATCTTTTGGA+GGG | + | chr8_3:67549166-67549185 | Msa1304310:intron | 35.0% |
AACAGGGCAAAAATGACAAA+TGG | + | chr8_3:67549323-67549342 | Msa1304310:intron | 35.0% | |
AAAGTCTTGGATGGAAAAAG+TGG | - | chr8_3:67549510-67549529 | None:intergenic | 35.0% | |
! | GGAGCATCTACAATACAATT+TGG | + | chr8_3:67549541-67549560 | Msa1304310:CDS | 35.0% |
GTGCACGAAAAGGAAATTTA+TGG | + | chr8_3:67549682-67549701 | Msa1304310:CDS | 35.0% | |
GGAAATTTATGGATCAGTCT+AGG | + | chr8_3:67549693-67549712 | Msa1304310:intron | 35.0% | |
TCTTTCATTGAAGGATTAGG+AGG | - | chr8_3:67549824-67549843 | None:intergenic | 35.0% | |
GCTTCTTTCATTGAAGGATT+AGG | - | chr8_3:67549827-67549846 | None:intergenic | 35.0% | |
ACAATCATTGAAGATAGCGA+CGG | - | chr8_3:67549968-67549987 | None:intergenic | 35.0% | |
TCAATCATTACAAGCTTCGA+GGG | + | chr8_3:67549987-67550006 | Msa1304310:CDS | 35.0% | |
CAATGCATAGGAATTAGGAT+TGG | - | chr8_3:67550095-67550114 | None:intergenic | 35.0% | |
CAATCCTAATTCCTATGCAT+TGG | + | chr8_3:67550093-67550112 | Msa1304310:CDS | 35.0% | |
ATGACCAATGCATAGGAATT+AGG | - | chr8_3:67550100-67550119 | None:intergenic | 35.0% | |
AATTGTTTGTTTCGAATGGG+AGG | + | chr8_3:67550181-67550200 | Msa1304310:CDS | 35.0% | |
! | CAAGGTACAATTTTGTGAAC+TGG | + | chr8_3:67548832-67548851 | Msa1304310:CDS | 35.0% |
AAATTGGAAAACATGGGAAG+AGG | - | chr8_3:67548881-67548900 | None:intergenic | 35.0% | |
! | ACTGAAAATGGATCTTTTGG+AGG | + | chr8_3:67549165-67549184 | Msa1304310:intron | 35.0% |
! | CTGAAAATGGATCTTTTGGA+GGG | + | chr8_3:67549166-67549185 | Msa1304310:intron | 35.0% |
AACAGGGCAAAAATGACAAA+TGG | + | chr8_3:67549323-67549342 | Msa1304310:intron | 35.0% | |
AAAGTCTTGGATGGAAAAAG+TGG | - | chr8_3:67549510-67549529 | None:intergenic | 35.0% | |
! | GGAGCATCTACAATACAATT+TGG | + | chr8_3:67549541-67549560 | Msa1304310:CDS | 35.0% |
GTGCACGAAAAGGAAATTTA+TGG | + | chr8_3:67549682-67549701 | Msa1304310:CDS | 35.0% | |
GGAAATTTATGGATCAGTCT+AGG | + | chr8_3:67549693-67549712 | Msa1304310:intron | 35.0% | |
TCTTTCATTGAAGGATTAGG+AGG | - | chr8_3:67549824-67549843 | None:intergenic | 35.0% | |
GCTTCTTTCATTGAAGGATT+AGG | - | chr8_3:67549827-67549846 | None:intergenic | 35.0% | |
ACAATCATTGAAGATAGCGA+CGG | - | chr8_3:67549968-67549987 | None:intergenic | 35.0% | |
TCAATCATTACAAGCTTCGA+GGG | + | chr8_3:67549987-67550006 | Msa1304310:CDS | 35.0% | |
CAATGCATAGGAATTAGGAT+TGG | - | chr8_3:67550095-67550114 | None:intergenic | 35.0% | |
CAATCCTAATTCCTATGCAT+TGG | + | chr8_3:67550093-67550112 | Msa1304310:CDS | 35.0% | |
ATGACCAATGCATAGGAATT+AGG | - | chr8_3:67550100-67550119 | None:intergenic | 35.0% | |
AATTGTTTGTTTCGAATGGG+AGG | + | chr8_3:67550181-67550200 | Msa1304310:CDS | 35.0% | |
TCTCTCTTGGAAGACATTAC+TGG | + | chr8_3:67548781-67548800 | Msa1304310:CDS | 40.0% | |
AATCCACAATGCATTCGTTC+AGG | - | chr8_3:67548962-67548981 | None:intergenic | 40.0% | |
CTGGATGAATTTGGCATCAA+GGG | - | chr8_3:67549362-67549381 | None:intergenic | 40.0% | |
TCAAAAAGTAAAGCGTGGAC+AGG | - | chr8_3:67549601-67549620 | None:intergenic | 40.0% | |
ACGAGTCAAAAAGTAAAGCG+TGG | - | chr8_3:67549606-67549625 | None:intergenic | 40.0% | |
GAGAAATCAACAAGGTACAC+CGG | - | chr8_3:67549635-67549654 | None:intergenic | 40.0% | |
! | GATGATCAGTACTTTTACGG+AGG | + | chr8_3:67549715-67549734 | Msa1304310:CDS | 40.0% |
GCGAAAGATTCTTGAGAGAT+CGG | + | chr8_3:67549754-67549773 | Msa1304310:CDS | 40.0% | |
CGAAAGATTCTTGAGAGATC+GGG | + | chr8_3:67549755-67549774 | Msa1304310:CDS | 40.0% | |
GGAATCTACTTATCTTCCAG+AGG | + | chr8_3:67549784-67549803 | Msa1304310:CDS | 40.0% | |
GTCAATCATTACAAGCTTCG+AGG | + | chr8_3:67549986-67550005 | Msa1304310:CDS | 40.0% | |
ATAAAGAGCTACAACCTAGG+TGG | + | chr8_3:67550013-67550032 | Msa1304310:intron | 40.0% | |
TAAAGAGCTACAACCTAGGT+GGG | + | chr8_3:67550014-67550033 | Msa1304310:intron | 40.0% | |
TCTTGCTAAAGATCTTCTCC+AGG | + | chr8_3:67550069-67550088 | Msa1304310:CDS | 40.0% | |
CATGCTAATGACCAATGCAT+AGG | - | chr8_3:67550107-67550126 | None:intergenic | 40.0% | |
! | CTATGCATTGGTCATTAGCA+TGG | + | chr8_3:67550105-67550124 | Msa1304310:CDS | 40.0% |
TCTCTCTTGGAAGACATTAC+TGG | + | chr8_3:67548781-67548800 | Msa1304310:CDS | 40.0% | |
AATCCACAATGCATTCGTTC+AGG | - | chr8_3:67548962-67548981 | None:intergenic | 40.0% | |
CTGGATGAATTTGGCATCAA+GGG | - | chr8_3:67549362-67549381 | None:intergenic | 40.0% | |
TCAAAAAGTAAAGCGTGGAC+AGG | - | chr8_3:67549601-67549620 | None:intergenic | 40.0% | |
ACGAGTCAAAAAGTAAAGCG+TGG | - | chr8_3:67549606-67549625 | None:intergenic | 40.0% | |
GAGAAATCAACAAGGTACAC+CGG | - | chr8_3:67549635-67549654 | None:intergenic | 40.0% | |
! | GATGATCAGTACTTTTACGG+AGG | + | chr8_3:67549715-67549734 | Msa1304310:CDS | 40.0% |
GCGAAAGATTCTTGAGAGAT+CGG | + | chr8_3:67549754-67549773 | Msa1304310:CDS | 40.0% | |
CGAAAGATTCTTGAGAGATC+GGG | + | chr8_3:67549755-67549774 | Msa1304310:CDS | 40.0% | |
GGAATCTACTTATCTTCCAG+AGG | + | chr8_3:67549784-67549803 | Msa1304310:CDS | 40.0% | |
GTCAATCATTACAAGCTTCG+AGG | + | chr8_3:67549986-67550005 | Msa1304310:CDS | 40.0% | |
ATAAAGAGCTACAACCTAGG+TGG | + | chr8_3:67550013-67550032 | Msa1304310:intron | 40.0% | |
TAAAGAGCTACAACCTAGGT+GGG | + | chr8_3:67550014-67550033 | Msa1304310:intron | 40.0% | |
TCTTGCTAAAGATCTTCTCC+AGG | + | chr8_3:67550069-67550088 | Msa1304310:CDS | 40.0% | |
CATGCTAATGACCAATGCAT+AGG | - | chr8_3:67550107-67550126 | None:intergenic | 40.0% | |
! | CTATGCATTGGTCATTAGCA+TGG | + | chr8_3:67550105-67550124 | Msa1304310:CDS | 40.0% |
TTGGAAGACATTACTGGCAC+TGG | + | chr8_3:67548787-67548806 | Msa1304310:CDS | 45.0% | |
TGGAAGACATTACTGGCACT+GGG | + | chr8_3:67548788-67548807 | Msa1304310:CDS | 45.0% | |
CTTCCTGAACGAATGCATTG+TGG | + | chr8_3:67548956-67548975 | Msa1304310:CDS | 45.0% | |
CCTGGATGAATTTGGCATCA+AGG | - | chr8_3:67549363-67549382 | None:intergenic | 45.0% | |
CCTTGATGCCAAATTCATCC+AGG | + | chr8_3:67549360-67549379 | Msa1304310:intron | 45.0% | |
GGCAAGTTCCTGGATGAATT+TGG | - | chr8_3:67549371-67549390 | None:intergenic | 45.0% | |
CTTGAAATCAGGCAAGTTCC+TGG | - | chr8_3:67549381-67549400 | None:intergenic | 45.0% | |
CCACAAGTGGGGAAAGAAAA+AGG | - | chr8_3:67549466-67549485 | None:intergenic | 45.0% | |
! | CCTTTTTCTTTCCCCACTTG+TGG | + | chr8_3:67549463-67549482 | Msa1304310:intron | 45.0% |
AGCAATCAACACCACAAGTG+GGG | - | chr8_3:67549477-67549496 | None:intergenic | 45.0% | |
CAGCAATCAACACCACAAGT+GGG | - | chr8_3:67549478-67549497 | None:intergenic | 45.0% | |
AAAGCGTGGACAGGAAAACA+AGG | - | chr8_3:67549592-67549611 | None:intergenic | 45.0% | |
!! | CTTTTTGACTCGTCCGAAAC+CGG | + | chr8_3:67549613-67549632 | Msa1304310:CDS | 45.0% |
!! | TCAACAAGGTACACCGGTTT+CGG | - | chr8_3:67549629-67549648 | None:intergenic | 45.0% |
AATCGCGTAAGTGCACGAAA+AGG | + | chr8_3:67549672-67549691 | Msa1304310:CDS | 45.0% | |
ATTCTTGAGAGATCGGGACT+CGG | + | chr8_3:67549761-67549780 | Msa1304310:CDS | 45.0% | |
GGAAAGTTAAGAACAGCCTC+TGG | - | chr8_3:67549803-67549822 | None:intergenic | 45.0% | |
GAAGCTGAGACTGTGATGTT+CGG | + | chr8_3:67549854-67549873 | Msa1304310:CDS | 45.0% | |
TTGAAGATAGCGACGGAGTT+GGG | - | chr8_3:67549961-67549980 | None:intergenic | 45.0% | |
ATTGAAGATAGCGACGGAGT+TGG | - | chr8_3:67549962-67549981 | None:intergenic | 45.0% | |
!! | CATAGGAATTAGGATTGGCC+TGG | - | chr8_3:67550090-67550109 | None:intergenic | 45.0% |
TTGGAAGACATTACTGGCAC+TGG | + | chr8_3:67548787-67548806 | Msa1304310:CDS | 45.0% | |
TGGAAGACATTACTGGCACT+GGG | + | chr8_3:67548788-67548807 | Msa1304310:CDS | 45.0% | |
CTTCCTGAACGAATGCATTG+TGG | + | chr8_3:67548956-67548975 | Msa1304310:CDS | 45.0% | |
CCTGGATGAATTTGGCATCA+AGG | - | chr8_3:67549363-67549382 | None:intergenic | 45.0% | |
CCTTGATGCCAAATTCATCC+AGG | + | chr8_3:67549360-67549379 | Msa1304310:intron | 45.0% | |
GGCAAGTTCCTGGATGAATT+TGG | - | chr8_3:67549371-67549390 | None:intergenic | 45.0% | |
CTTGAAATCAGGCAAGTTCC+TGG | - | chr8_3:67549381-67549400 | None:intergenic | 45.0% | |
CCACAAGTGGGGAAAGAAAA+AGG | - | chr8_3:67549466-67549485 | None:intergenic | 45.0% | |
! | CCTTTTTCTTTCCCCACTTG+TGG | + | chr8_3:67549463-67549482 | Msa1304310:intron | 45.0% |
AGCAATCAACACCACAAGTG+GGG | - | chr8_3:67549477-67549496 | None:intergenic | 45.0% | |
CAGCAATCAACACCACAAGT+GGG | - | chr8_3:67549478-67549497 | None:intergenic | 45.0% | |
AAAGCGTGGACAGGAAAACA+AGG | - | chr8_3:67549592-67549611 | None:intergenic | 45.0% | |
!! | CTTTTTGACTCGTCCGAAAC+CGG | + | chr8_3:67549613-67549632 | Msa1304310:CDS | 45.0% |
!! | TCAACAAGGTACACCGGTTT+CGG | - | chr8_3:67549629-67549648 | None:intergenic | 45.0% |
AATCGCGTAAGTGCACGAAA+AGG | + | chr8_3:67549672-67549691 | Msa1304310:CDS | 45.0% | |
ATTCTTGAGAGATCGGGACT+CGG | + | chr8_3:67549761-67549780 | Msa1304310:CDS | 45.0% | |
GGAAAGTTAAGAACAGCCTC+TGG | - | chr8_3:67549803-67549822 | None:intergenic | 45.0% | |
GAAGCTGAGACTGTGATGTT+CGG | + | chr8_3:67549854-67549873 | Msa1304310:CDS | 45.0% | |
TTGAAGATAGCGACGGAGTT+GGG | - | chr8_3:67549961-67549980 | None:intergenic | 45.0% | |
ATTGAAGATAGCGACGGAGT+TGG | - | chr8_3:67549962-67549981 | None:intergenic | 45.0% | |
!! | CATAGGAATTAGGATTGGCC+TGG | - | chr8_3:67550090-67550109 | None:intergenic | 45.0% |
CACTCTCTCTCTCTCTCTCT+TGG | + | chr8_3:67548768-67548787 | Msa1304310:CDS | 50.0% | |
! | ATTACTGGCACTGGGATCTC+TGG | + | chr8_3:67548796-67548815 | Msa1304310:CDS | 50.0% |
!! | TCTGGTGGGTTTGGTCTTCA+AGG | + | chr8_3:67548814-67548833 | Msa1304310:CDS | 50.0% |
GCAGCAATCAACACCACAAG+TGG | - | chr8_3:67549479-67549498 | None:intergenic | 50.0% | |
GTGCACTTACGCGATTCTTC+AGG | - | chr8_3:67549668-67549687 | None:intergenic | 50.0% | |
TTCTTGAGAGATCGGGACTC+GGG | + | chr8_3:67549762-67549781 | Msa1304310:CDS | 50.0% | |
AGCTACAACCTAGGTGGGAT+GGG | + | chr8_3:67550019-67550038 | Msa1304310:intron | 50.0% | |
CACTCTCTCTCTCTCTCTCT+TGG | + | chr8_3:67548768-67548787 | Msa1304310:CDS | 50.0% | |
! | ATTACTGGCACTGGGATCTC+TGG | + | chr8_3:67548796-67548815 | Msa1304310:CDS | 50.0% |
!! | TCTGGTGGGTTTGGTCTTCA+AGG | + | chr8_3:67548814-67548833 | Msa1304310:CDS | 50.0% |
GCAGCAATCAACACCACAAG+TGG | - | chr8_3:67549479-67549498 | None:intergenic | 50.0% | |
GTGCACTTACGCGATTCTTC+AGG | - | chr8_3:67549668-67549687 | None:intergenic | 50.0% | |
TTCTTGAGAGATCGGGACTC+GGG | + | chr8_3:67549762-67549781 | Msa1304310:CDS | 50.0% | |
AGCTACAACCTAGGTGGGAT+GGG | + | chr8_3:67550019-67550038 | Msa1304310:intron | 50.0% | |
!! | ACTGGGATCTCTGGTGGGTT+TGG | + | chr8_3:67548805-67548824 | Msa1304310:CDS | 55.0% |
TCTTGAGAGATCGGGACTCG+GGG | + | chr8_3:67549763-67549782 | Msa1304310:CDS | 55.0% | |
GAGCTACAACCTAGGTGGGA+TGG | + | chr8_3:67550018-67550037 | Msa1304310:intron | 55.0% | |
!! | ACTGGGATCTCTGGTGGGTT+TGG | + | chr8_3:67548805-67548824 | Msa1304310:CDS | 55.0% |
TCTTGAGAGATCGGGACTCG+GGG | + | chr8_3:67549763-67549782 | Msa1304310:CDS | 55.0% | |
GAGCTACAACCTAGGTGGGA+TGG | + | chr8_3:67550018-67550037 | Msa1304310:intron | 55.0% | |
! | ACTGGCACTGGGATCTCTGG+TGG | + | chr8_3:67548799-67548818 | Msa1304310:CDS | 60.0% |
! | CTGGCACTGGGATCTCTGGT+GGG | + | chr8_3:67548800-67548819 | Msa1304310:CDS | 60.0% |
CACTGCAACCCATCCCACCT+AGG | - | chr8_3:67550030-67550049 | None:intergenic | 60.0% | |
!! | AGGTGGGATGGGTTGCAGTG+CGG | + | chr8_3:67550030-67550049 | Msa1304310:intron | 60.0% |
! | ACTGGCACTGGGATCTCTGG+TGG | + | chr8_3:67548799-67548818 | Msa1304310:CDS | 60.0% |
! | CTGGCACTGGGATCTCTGGT+GGG | + | chr8_3:67548800-67548819 | Msa1304310:CDS | 60.0% |
CACTGCAACCCATCCCACCT+AGG | - | chr8_3:67550030-67550049 | None:intergenic | 60.0% | |
!! | AGGTGGGATGGGTTGCAGTG+CGG | + | chr8_3:67550030-67550049 | Msa1304310:intron | 60.0% |
!! | GGTGGGATGGGTTGCAGTGC+GGG | + | chr8_3:67550031-67550050 | Msa1304310:intron | 65.0% |
!! | GTGGGATGGGTTGCAGTGCG+GGG | + | chr8_3:67550032-67550051 | Msa1304310:intron | 65.0% |
!! | GGTGGGATGGGTTGCAGTGC+GGG | + | chr8_3:67550031-67550050 | Msa1304310:intron | 65.0% |
!! | GTGGGATGGGTTGCAGTGCG+GGG | + | chr8_3:67550032-67550051 | Msa1304310:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 67548768 | 67550207 | 67548768 | ID=Msa1304310;Name=Msa1304310 |
chr8_3 | mRNA | 67548768 | 67550207 | 67548768 | ID=Msa1304310-mRNA-1;Parent=Msa1304310;Name=Msa1304310-mRNA-1;_AED=0.11;_eAED=0.19;_QI=0|0.25|0|1|0|0|5|0|299 |
chr8_3 | exon | 67548768 | 67548992 | 67548768 | ID=Msa1304310-mRNA-1:exon:20750;Parent=Msa1304310-mRNA-1 |
chr8_3 | exon | 67549503 | 67549708 | 67549503 | ID=Msa1304310-mRNA-1:exon:20751;Parent=Msa1304310-mRNA-1 |
chr8_3 | exon | 67549715 | 67549937 | 67549715 | ID=Msa1304310-mRNA-1:exon:20752;Parent=Msa1304310-mRNA-1 |
chr8_3 | exon | 67549949 | 67550031 | 67549949 | ID=Msa1304310-mRNA-1:exon:20753;Parent=Msa1304310-mRNA-1 |
chr8_3 | exon | 67550048 | 67550207 | 67550048 | ID=Msa1304310-mRNA-1:exon:20754;Parent=Msa1304310-mRNA-1 |
chr8_3 | CDS | 67548768 | 67548992 | 67548768 | ID=Msa1304310-mRNA-1:cds;Parent=Msa1304310-mRNA-1 |
chr8_3 | CDS | 67549503 | 67549708 | 67549503 | ID=Msa1304310-mRNA-1:cds;Parent=Msa1304310-mRNA-1 |
chr8_3 | CDS | 67549715 | 67549937 | 67549715 | ID=Msa1304310-mRNA-1:cds;Parent=Msa1304310-mRNA-1 |
chr8_3 | CDS | 67549949 | 67550031 | 67549949 | ID=Msa1304310-mRNA-1:cds;Parent=Msa1304310-mRNA-1 |
chr8_3 | CDS | 67550048 | 67550207 | 67550048 | ID=Msa1304310-mRNA-1:cds;Parent=Msa1304310-mRNA-1 |
Gene Sequence |
Protein sequence |