AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1304310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1304310 MtrunA17_Chr4g0063011 80.556 252 30 3 63 299 34 281 1.12e-136 395
Msa1304310 MtrunA17_Chr1g0188051 59.833 239 77 3 76 299 59 293 2.01e-93 286
Msa1304310 MtrunA17_Chr1g0166191 56.977 258 88 4 57 299 50 299 9.90e-92 281
Msa1304310 MtrunA17_Chr4g0035081 49.412 255 106 5 64 299 40 290 9.64e-79 248
Msa1304310 MtrunA17_Chr7g0250651 75.352 142 33 1 63 202 45 186 8.33e-73 222
Msa1304310 MtrunA17_Chr7g0276251 51.316 228 92 3 87 299 89 312 3.67e-69 223
Msa1304310 MtrunA17_Chr2g0306781 71.250 160 29 2 153 299 31 186 1.43e-67 216
Msa1304310 MtrunA17_Chr3g0136561 41.322 242 121 5 73 297 442 679 1.40e-59 204
Msa1304310 MtrunA17_Chr5g0423521 43.320 247 118 5 68 299 39 278 4.24e-58 194
Msa1304310 MtrunA17_Chr6g0480561 48.416 221 95 4 94 299 38 254 5.39e-57 190
Msa1304310 MtrunA17_Chr1g0209881 47.005 217 95 5 99 299 66 278 3.42e-56 189
Msa1304310 MtrunA17_Chr2g0282281 40.175 229 116 5 88 299 78 302 6.71e-44 156
Msa1304310 MtrunA17_Chr4g0026861 41.117 197 96 4 81 261 22 214 3.64e-37 131
Msa1304310 MtrunA17_Chr2g0277841 38.660 194 109 4 116 299 45 238 1.82e-36 135
Msa1304310 MtrunA17_Chr2g0295781 36.744 215 117 4 100 299 27 237 1.22e-35 133
Msa1304310 MtrunA17_Chr6g0461621 36.975 238 120 8 54 271 2 229 1.82e-35 127
Msa1304310 MtrunA17_Chr3g0115021 37.500 200 113 3 112 299 74 273 1.60e-32 125
Msa1304310 MtrunA17_Chr3g0115041 37.500 200 113 3 112 299 74 273 1.61e-32 125
Msa1304310 MtrunA17_Chr4g0026801 45.255 137 72 2 81 214 22 158 4.83e-32 116
Msa1304310 MtrunA17_Chr1g0204301 37.000 200 107 3 115 299 77 272 1.00e-31 123
Msa1304310 MtrunA17_Chr7g0250661 88.889 54 6 0 246 299 23 76 2.63e-25 102
Msa1304310 MtrunA17_Chr1g0212951 30.876 217 128 6 99 299 13 223 1.29e-24 103
Msa1304310 MtrunA17_Chr6g0469631 33.831 201 105 4 119 299 80 272 5.62e-24 101
Msa1304310 MtrunA17_Chr4g0030581 31.343 201 124 6 111 298 22 221 2.41e-23 99.4
Msa1304310 MtrunA17_Chr4g0030601 31.188 202 125 6 111 299 22 222 6.24e-23 98.2
Msa1304310 MtrunA17_Chr2g0327721 30.198 202 115 6 116 298 27 221 1.71e-22 97.1
Msa1304310 MtrunA17_Chr4g0030591 29.064 203 118 7 116 299 27 222 6.92e-21 92.4
Msa1304310 MtrunA17_Chr7g0276241 70.370 54 16 0 246 299 23 76 1.22e-18 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1304310 AT2G26640.1 67.063 252 64 3 63 299 43 290 1.38e-112 335
Msa1304310 AT5G43760.1 56.904 239 84 4 76 299 67 301 1.61e-85 266
Msa1304310 AT1G04220.1 53.846 260 100 5 56 299 40 295 4.96e-85 265
Msa1304310 AT2G16280.1 50.379 264 106 6 55 299 41 298 1.93e-81 255
Msa1304310 AT1G19440.1 49.621 264 108 6 55 299 45 302 1.08e-76 243
Msa1304310 AT1G01120.1 47.934 242 105 4 75 299 75 312 4.00e-70 226
Msa1304310 AT4G34510.1 42.491 273 119 7 45 299 20 272 1.24e-65 213
Msa1304310 AT1G68530.2 45.064 233 109 4 82 299 51 279 3.27e-62 201
Msa1304310 AT2G26250.1 43.860 228 108 4 86 297 86 309 1.43e-60 202
Msa1304310 AT1G68530.1 45.064 233 109 4 82 299 51 279 2.42e-60 200
Msa1304310 AT4G34520.1 41.509 265 122 5 64 299 17 277 2.03e-56 190
Msa1304310 AT1G25450.1 43.348 233 113 3 82 299 46 274 2.36e-56 189
Msa1304310 AT2G46720.1 49.246 199 90 4 112 299 52 250 1.20e-55 187
Msa1304310 AT2G15090.1 42.966 263 106 7 69 299 17 267 4.92e-55 186
Msa1304310 AT4G34250.1 42.063 252 121 5 69 299 28 275 6.48e-54 183
Msa1304310 AT3G10280.1 47.980 198 87 4 112 299 52 243 9.55e-54 182
Msa1304310 AT3G52160.1 40.385 208 105 3 107 299 75 278 1.17e-42 152
Msa1304310 AT1G71160.1 35.023 217 122 4 98 299 25 237 4.03e-36 135
Msa1304310 AT3G52160.2 41.566 166 80 2 147 299 4 165 1.62e-33 125
Msa1304310 AT5G49070.2 33.962 212 128 4 99 299 31 241 2.77e-32 122
Msa1304310 AT5G49070.1 33.962 212 128 4 99 299 31 241 2.94e-31 122
Msa1304310 AT5G04530.1 34.500 200 103 7 121 299 34 226 1.87e-24 102
Msa1304310 AT2G28630.2 33.333 201 106 8 118 298 29 221 4.63e-23 99.0
Msa1304310 AT2G28630.1 33.333 201 106 8 118 298 29 221 4.63e-23 99.0
Msa1304310 AT1G07720.2 29.146 199 121 5 116 298 70 264 3.25e-21 94.0
Msa1304310 AT1G07720.1 29.146 199 121 5 116 298 27 221 4.37e-21 93.2

Find 55 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACATTGAATTGGTATTT+TGG 0.124443 8_3:+67550133 Msa1304310:CDS
GGAGCATCTACAATACAATT+TGG 0.261765 8_3:+67549541 Msa1304310:CDS
GTGCACGAAAAGGAAATTTA+TGG 0.264464 8_3:+67549682 Msa1304310:CDS
ACTGGGATCTCTGGTGGGTT+TGG 0.267868 8_3:+67548805 Msa1304310:CDS
ATGACCAATGCATAGGAATT+AGG 0.295997 8_3:-67550097 None:intergenic
ATCAGAATTCCTATATCTTT+AGG 0.301992 8_3:-67549914 None:intergenic
TTTCTAGCTTCTTTCATTGA+AGG 0.316291 8_3:-67549830 None:intergenic
GCTTCTTTCATTGAAGGATT+AGG 0.319754 8_3:-67549824 None:intergenic
TCAACAAGGTACACCGGTTT+CGG 0.345198 8_3:-67549626 None:intergenic
GTGCACTTACGCGATTCTTC+AGG 0.355117 8_3:-67549665 None:intergenic
TCTGGTGGGTTTGGTCTTCA+AGG 0.363067 8_3:+67548814 Msa1304310:CDS
TTCTAATTGTTTGTTTCGAA+TGG 0.382081 8_3:+67550177 Msa1304310:CDS
CCCAAATATCATAAAAGTCT+TGG 0.400754 8_3:-67549520 None:intergenic
ACAGTAAAGCCTAAAGATAT+AGG 0.416419 8_3:+67549905 Msa1304310:CDS
AATCCACAATGCATTCGTTC+AGG 0.417121 8_3:-67548959 None:intergenic
TCTCTCTTGGAAGACATTAC+TGG 0.428776 8_3:+67548781 Msa1304310:CDS
TCTAATTGTTTGTTTCGAAT+GGG 0.432398 8_3:+67550178 Msa1304310:CDS
TGGAGAATATCACATTGAAT+TGG 0.437805 8_3:+67550125 Msa1304310:CDS
TTGAAGATAGCGACGGAGTT+GGG 0.440924 8_3:-67549958 None:intergenic
ATTACTGGCACTGGGATCTC+TGG 0.447923 8_3:+67548796 Msa1304310:CDS
CGAAAGATTCTTGAGAGATC+GGG 0.455522 8_3:+67549755 Msa1304310:CDS
TTGGAAGACATTACTGGCAC+TGG 0.465192 8_3:+67548787 Msa1304310:CDS
TTCTTGAGAGATCGGGACTC+GGG 0.466115 8_3:+67549762 Msa1304310:CDS
ATTCTTGAGAGATCGGGACT+CGG 0.466508 8_3:+67549761 Msa1304310:CDS
GGAAAGTTAAGAACAGCCTC+TGG 0.468115 8_3:-67549800 None:intergenic
GCGAAAGATTCTTGAGAGAT+CGG 0.468284 8_3:+67549754 Msa1304310:CDS
CTGGCACTGGGATCTCTGGT+GGG 0.510740 8_3:+67548800 Msa1304310:CDS
ACTGGCACTGGGATCTCTGG+TGG 0.512292 8_3:+67548799 Msa1304310:CDS
ATTGAAGATAGCGACGGAGT+TGG 0.522625 8_3:-67549959 None:intergenic
GTCAATCATTACAAGCTTCG+AGG 0.523795 8_3:+67549986 Msa1304310:CDS
AATATCATAAAAGTCTTGGA+TGG 0.525987 8_3:-67549516 None:intergenic
CTTACTAAATAGCTCATCAA+TGG 0.525994 8_3:-67549879 None:intergenic
CTATGCATTGGTCATTAGCA+TGG 0.531088 8_3:+67550105 Msa1304310:CDS
CATAGGAATTAGGATTGGCC+TGG 0.532315 8_3:-67550087 None:intergenic
CAATCCTAATTCCTATGCAT+TGG 0.538699 8_3:+67550093 Msa1304310:CDS
AATCGCGTAAGTGCACGAAA+AGG 0.539987 8_3:+67549672 Msa1304310:CDS
CTTCCTGAACGAATGCATTG+TGG 0.540223 8_3:+67548956 Msa1304310:CDS
TCTTTCATTGAAGGATTAGG+AGG 0.545431 8_3:-67549821 None:intergenic
GAAGCTGAGACTGTGATGTT+CGG 0.565891 8_3:+67549854 Msa1304310:CDS
TCAATCATTACAAGCTTCGA+GGG 0.569665 8_3:+67549987 Msa1304310:CDS
AATTGTTTGTTTCGAATGGG+AGG 0.571309 8_3:+67550181 Msa1304310:CDS
AAATTGGAAAACATGGGAAG+AGG 0.571781 8_3:-67548878 None:intergenic
AATATAAAGAGCTACAACCT+AGG 0.575611 8_3:+67550010 Msa1304310:CDS
TCTTGCTAAAGATCTTCTCC+AGG 0.579124 8_3:+67550069 Msa1304310:CDS
CATTGTGGATTTATACACAA+AGG 0.580100 8_3:+67548971 Msa1304310:CDS
CAATGCATAGGAATTAGGAT+TGG 0.604720 8_3:-67550092 None:intergenic
TGGAAGACATTACTGGCACT+GGG 0.608170 8_3:+67548788 Msa1304310:CDS
TCTTGAGAGATCGGGACTCG+GGG 0.615846 8_3:+67549763 Msa1304310:CDS
CATGCTAATGACCAATGCAT+AGG 0.618448 8_3:-67550104 None:intergenic
TATATCTTTAGGCTTTACTG+TGG 0.620510 8_3:-67549903 None:intergenic
GGAATCTACTTATCTTCCAG+AGG 0.644232 8_3:+67549784 Msa1304310:CDS
AAAGCGTGGACAGGAAAACA+AGG 0.654849 8_3:-67549589 None:intergenic
ACAATCATTGAAGATAGCGA+CGG 0.668618 8_3:-67549965 None:intergenic
GAGAAATCAACAAGGTACAC+CGG 0.678354 8_3:-67549632 None:intergenic
TGTAACATGAGAAATCAACA+AGG 0.794037 8_3:-67549640 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATAATCAACAAAAA+TGG - chr8_3:67549121-67549140 None:intergenic 10.0%
!! AAATTAATAATCAACAAAAA+TGG - chr8_3:67549121-67549140 None:intergenic 10.0%
!!! GATTACATATTTTCTTTTAA+TGG - chr8_3:67549280-67549299 None:intergenic 15.0%
!!! GATTACATATTTTCTTTTAA+TGG - chr8_3:67549280-67549299 None:intergenic 15.0%
!! AATGAAAAATTGGAAAACAT+GGG - chr8_3:67548887-67548906 None:intergenic 20.0%
!! TAATGAAAAATTGGAAAACA+TGG - chr8_3:67548888-67548907 None:intergenic 20.0%
!!! ATTGATTTAACTTTTGAACA+GGG + chr8_3:67549307-67549326 Msa1304310:intron 20.0%
!! AAATTGAAGTATGTTAAACT+TGG + chr8_3:67549410-67549429 Msa1304310:intron 20.0%
!! AATGAAAAATTGGAAAACAT+GGG - chr8_3:67548887-67548906 None:intergenic 20.0%
!! TAATGAAAAATTGGAAAACA+TGG - chr8_3:67548888-67548907 None:intergenic 20.0%
!!! ATTGATTTAACTTTTGAACA+GGG + chr8_3:67549307-67549326 Msa1304310:intron 20.0%
!! AAATTGAAGTATGTTAAACT+TGG + chr8_3:67549410-67549429 Msa1304310:intron 20.0%
! GTTAATTTACATGCATTGAA+TGG - chr8_3:67549099-67549118 None:intergenic 25.0%
! GTAGAAATTGTTACTGAAAA+TGG + chr8_3:67549153-67549172 Msa1304310:intron 25.0%
!!! GATTGATTTAACTTTTGAAC+AGG + chr8_3:67549306-67549325 Msa1304310:intron 25.0%
! TTAACAGATTTCTTGAAATC+AGG - chr8_3:67549392-67549411 None:intergenic 25.0%
! AATATCATAAAAGTCTTGGA+TGG - chr8_3:67549519-67549538 None:intergenic 25.0%
!! TCCAAGACTTTTATGATATT+TGG + chr8_3:67549519-67549538 Msa1304310:CDS 25.0%
!! CCAAGACTTTTATGATATTT+GGG + chr8_3:67549520-67549539 Msa1304310:CDS 25.0%
! ATCAGAATTCCTATATCTTT+AGG - chr8_3:67549917-67549936 None:intergenic 25.0%
!! ATCACATTGAATTGGTATTT+TGG + chr8_3:67550133-67550152 Msa1304310:CDS 25.0%
! TTCTAATTGTTTGTTTCGAA+TGG + chr8_3:67550177-67550196 Msa1304310:CDS 25.0%
! TCTAATTGTTTGTTTCGAAT+GGG + chr8_3:67550178-67550197 Msa1304310:CDS 25.0%
! GTTAATTTACATGCATTGAA+TGG - chr8_3:67549099-67549118 None:intergenic 25.0%
! GTAGAAATTGTTACTGAAAA+TGG + chr8_3:67549153-67549172 Msa1304310:intron 25.0%
!!! GATTGATTTAACTTTTGAAC+AGG + chr8_3:67549306-67549325 Msa1304310:intron 25.0%
! TTAACAGATTTCTTGAAATC+AGG - chr8_3:67549392-67549411 None:intergenic 25.0%
! AATATCATAAAAGTCTTGGA+TGG - chr8_3:67549519-67549538 None:intergenic 25.0%
!! TCCAAGACTTTTATGATATT+TGG + chr8_3:67549519-67549538 Msa1304310:CDS 25.0%
!! CCAAGACTTTTATGATATTT+GGG + chr8_3:67549520-67549539 Msa1304310:CDS 25.0%
! ATCAGAATTCCTATATCTTT+AGG - chr8_3:67549917-67549936 None:intergenic 25.0%
!! ATCACATTGAATTGGTATTT+TGG + chr8_3:67550133-67550152 Msa1304310:CDS 25.0%
! TTCTAATTGTTTGTTTCGAA+TGG + chr8_3:67550177-67550196 Msa1304310:CDS 25.0%
! TCTAATTGTTTGTTTCGAAT+GGG + chr8_3:67550178-67550197 Msa1304310:CDS 25.0%
! AAGGTACAATTTTGTGAACT+GGG + chr8_3:67548833-67548852 Msa1304310:CDS 30.0%
TGCAGTGAGTAATGAAAAAT+TGG - chr8_3:67548897-67548916 None:intergenic 30.0%
CATTGTGGATTTATACACAA+AGG + chr8_3:67548971-67548990 Msa1304310:CDS 30.0%
TACTCAACATGAAAATCAAG+TGG - chr8_3:67549076-67549095 None:intergenic 30.0%
! GTTACTGAAAATGGATCTTT+TGG + chr8_3:67549162-67549181 Msa1304310:intron 30.0%
AATCATGAGCAACAACAAAA+GGG - chr8_3:67549254-67549273 None:intergenic 30.0%
AAATCATGAGCAACAACAAA+AGG - chr8_3:67549255-67549274 None:intergenic 30.0%
TATCACTATCTAATCACTCA+TGG + chr8_3:67549434-67549453 Msa1304310:intron 30.0%
CCCAAATATCATAAAAGTCT+TGG - chr8_3:67549523-67549542 None:intergenic 30.0%
TGTAACATGAGAAATCAACA+AGG - chr8_3:67549643-67549662 None:intergenic 30.0%
! TAGGATGATCAGTACTTTTA+CGG + chr8_3:67549712-67549731 Msa1304310:intron 30.0%
!! TTTCTAGCTTCTTTCATTGA+AGG - chr8_3:67549833-67549852 None:intergenic 30.0%
CTTACTAAATAGCTCATCAA+TGG - chr8_3:67549882-67549901 None:intergenic 30.0%
TATATCTTTAGGCTTTACTG+TGG - chr8_3:67549906-67549925 None:intergenic 30.0%
ACAGTAAAGCCTAAAGATAT+AGG + chr8_3:67549905-67549924 Msa1304310:CDS 30.0%
AATATAAAGAGCTACAACCT+AGG + chr8_3:67550010-67550029 Msa1304310:CDS 30.0%
TGGAGAATATCACATTGAAT+TGG + chr8_3:67550125-67550144 Msa1304310:CDS 30.0%
!! ATTGGTATTTTGGAAACGAT+CGG + chr8_3:67550143-67550162 Msa1304310:CDS 30.0%
! AAGGTACAATTTTGTGAACT+GGG + chr8_3:67548833-67548852 Msa1304310:CDS 30.0%
TGCAGTGAGTAATGAAAAAT+TGG - chr8_3:67548897-67548916 None:intergenic 30.0%
CATTGTGGATTTATACACAA+AGG + chr8_3:67548971-67548990 Msa1304310:CDS 30.0%
TACTCAACATGAAAATCAAG+TGG - chr8_3:67549076-67549095 None:intergenic 30.0%
! GTTACTGAAAATGGATCTTT+TGG + chr8_3:67549162-67549181 Msa1304310:intron 30.0%
AATCATGAGCAACAACAAAA+GGG - chr8_3:67549254-67549273 None:intergenic 30.0%
AAATCATGAGCAACAACAAA+AGG - chr8_3:67549255-67549274 None:intergenic 30.0%
TATCACTATCTAATCACTCA+TGG + chr8_3:67549434-67549453 Msa1304310:intron 30.0%
CCCAAATATCATAAAAGTCT+TGG - chr8_3:67549523-67549542 None:intergenic 30.0%
TGTAACATGAGAAATCAACA+AGG - chr8_3:67549643-67549662 None:intergenic 30.0%
! TAGGATGATCAGTACTTTTA+CGG + chr8_3:67549712-67549731 Msa1304310:intron 30.0%
!! TTTCTAGCTTCTTTCATTGA+AGG - chr8_3:67549833-67549852 None:intergenic 30.0%
CTTACTAAATAGCTCATCAA+TGG - chr8_3:67549882-67549901 None:intergenic 30.0%
TATATCTTTAGGCTTTACTG+TGG - chr8_3:67549906-67549925 None:intergenic 30.0%
ACAGTAAAGCCTAAAGATAT+AGG + chr8_3:67549905-67549924 Msa1304310:CDS 30.0%
AATATAAAGAGCTACAACCT+AGG + chr8_3:67550010-67550029 Msa1304310:CDS 30.0%
TGGAGAATATCACATTGAAT+TGG + chr8_3:67550125-67550144 Msa1304310:CDS 30.0%
!! ATTGGTATTTTGGAAACGAT+CGG + chr8_3:67550143-67550162 Msa1304310:CDS 30.0%
! CAAGGTACAATTTTGTGAAC+TGG + chr8_3:67548832-67548851 Msa1304310:CDS 35.0%
AAATTGGAAAACATGGGAAG+AGG - chr8_3:67548881-67548900 None:intergenic 35.0%
! ACTGAAAATGGATCTTTTGG+AGG + chr8_3:67549165-67549184 Msa1304310:intron 35.0%
! CTGAAAATGGATCTTTTGGA+GGG + chr8_3:67549166-67549185 Msa1304310:intron 35.0%
AACAGGGCAAAAATGACAAA+TGG + chr8_3:67549323-67549342 Msa1304310:intron 35.0%
AAAGTCTTGGATGGAAAAAG+TGG - chr8_3:67549510-67549529 None:intergenic 35.0%
! GGAGCATCTACAATACAATT+TGG + chr8_3:67549541-67549560 Msa1304310:CDS 35.0%
GTGCACGAAAAGGAAATTTA+TGG + chr8_3:67549682-67549701 Msa1304310:CDS 35.0%
GGAAATTTATGGATCAGTCT+AGG + chr8_3:67549693-67549712 Msa1304310:intron 35.0%
TCTTTCATTGAAGGATTAGG+AGG - chr8_3:67549824-67549843 None:intergenic 35.0%
GCTTCTTTCATTGAAGGATT+AGG - chr8_3:67549827-67549846 None:intergenic 35.0%
ACAATCATTGAAGATAGCGA+CGG - chr8_3:67549968-67549987 None:intergenic 35.0%
TCAATCATTACAAGCTTCGA+GGG + chr8_3:67549987-67550006 Msa1304310:CDS 35.0%
CAATGCATAGGAATTAGGAT+TGG - chr8_3:67550095-67550114 None:intergenic 35.0%
CAATCCTAATTCCTATGCAT+TGG + chr8_3:67550093-67550112 Msa1304310:CDS 35.0%
ATGACCAATGCATAGGAATT+AGG - chr8_3:67550100-67550119 None:intergenic 35.0%
AATTGTTTGTTTCGAATGGG+AGG + chr8_3:67550181-67550200 Msa1304310:CDS 35.0%
! CAAGGTACAATTTTGTGAAC+TGG + chr8_3:67548832-67548851 Msa1304310:CDS 35.0%
AAATTGGAAAACATGGGAAG+AGG - chr8_3:67548881-67548900 None:intergenic 35.0%
! ACTGAAAATGGATCTTTTGG+AGG + chr8_3:67549165-67549184 Msa1304310:intron 35.0%
! CTGAAAATGGATCTTTTGGA+GGG + chr8_3:67549166-67549185 Msa1304310:intron 35.0%
AACAGGGCAAAAATGACAAA+TGG + chr8_3:67549323-67549342 Msa1304310:intron 35.0%
AAAGTCTTGGATGGAAAAAG+TGG - chr8_3:67549510-67549529 None:intergenic 35.0%
! GGAGCATCTACAATACAATT+TGG + chr8_3:67549541-67549560 Msa1304310:CDS 35.0%
GTGCACGAAAAGGAAATTTA+TGG + chr8_3:67549682-67549701 Msa1304310:CDS 35.0%
GGAAATTTATGGATCAGTCT+AGG + chr8_3:67549693-67549712 Msa1304310:intron 35.0%
TCTTTCATTGAAGGATTAGG+AGG - chr8_3:67549824-67549843 None:intergenic 35.0%
GCTTCTTTCATTGAAGGATT+AGG - chr8_3:67549827-67549846 None:intergenic 35.0%
ACAATCATTGAAGATAGCGA+CGG - chr8_3:67549968-67549987 None:intergenic 35.0%
TCAATCATTACAAGCTTCGA+GGG + chr8_3:67549987-67550006 Msa1304310:CDS 35.0%
CAATGCATAGGAATTAGGAT+TGG - chr8_3:67550095-67550114 None:intergenic 35.0%
CAATCCTAATTCCTATGCAT+TGG + chr8_3:67550093-67550112 Msa1304310:CDS 35.0%
ATGACCAATGCATAGGAATT+AGG - chr8_3:67550100-67550119 None:intergenic 35.0%
AATTGTTTGTTTCGAATGGG+AGG + chr8_3:67550181-67550200 Msa1304310:CDS 35.0%
TCTCTCTTGGAAGACATTAC+TGG + chr8_3:67548781-67548800 Msa1304310:CDS 40.0%
AATCCACAATGCATTCGTTC+AGG - chr8_3:67548962-67548981 None:intergenic 40.0%
CTGGATGAATTTGGCATCAA+GGG - chr8_3:67549362-67549381 None:intergenic 40.0%
TCAAAAAGTAAAGCGTGGAC+AGG - chr8_3:67549601-67549620 None:intergenic 40.0%
ACGAGTCAAAAAGTAAAGCG+TGG - chr8_3:67549606-67549625 None:intergenic 40.0%
GAGAAATCAACAAGGTACAC+CGG - chr8_3:67549635-67549654 None:intergenic 40.0%
! GATGATCAGTACTTTTACGG+AGG + chr8_3:67549715-67549734 Msa1304310:CDS 40.0%
GCGAAAGATTCTTGAGAGAT+CGG + chr8_3:67549754-67549773 Msa1304310:CDS 40.0%
CGAAAGATTCTTGAGAGATC+GGG + chr8_3:67549755-67549774 Msa1304310:CDS 40.0%
GGAATCTACTTATCTTCCAG+AGG + chr8_3:67549784-67549803 Msa1304310:CDS 40.0%
GTCAATCATTACAAGCTTCG+AGG + chr8_3:67549986-67550005 Msa1304310:CDS 40.0%
ATAAAGAGCTACAACCTAGG+TGG + chr8_3:67550013-67550032 Msa1304310:intron 40.0%
TAAAGAGCTACAACCTAGGT+GGG + chr8_3:67550014-67550033 Msa1304310:intron 40.0%
TCTTGCTAAAGATCTTCTCC+AGG + chr8_3:67550069-67550088 Msa1304310:CDS 40.0%
CATGCTAATGACCAATGCAT+AGG - chr8_3:67550107-67550126 None:intergenic 40.0%
! CTATGCATTGGTCATTAGCA+TGG + chr8_3:67550105-67550124 Msa1304310:CDS 40.0%
TCTCTCTTGGAAGACATTAC+TGG + chr8_3:67548781-67548800 Msa1304310:CDS 40.0%
AATCCACAATGCATTCGTTC+AGG - chr8_3:67548962-67548981 None:intergenic 40.0%
CTGGATGAATTTGGCATCAA+GGG - chr8_3:67549362-67549381 None:intergenic 40.0%
TCAAAAAGTAAAGCGTGGAC+AGG - chr8_3:67549601-67549620 None:intergenic 40.0%
ACGAGTCAAAAAGTAAAGCG+TGG - chr8_3:67549606-67549625 None:intergenic 40.0%
GAGAAATCAACAAGGTACAC+CGG - chr8_3:67549635-67549654 None:intergenic 40.0%
! GATGATCAGTACTTTTACGG+AGG + chr8_3:67549715-67549734 Msa1304310:CDS 40.0%
GCGAAAGATTCTTGAGAGAT+CGG + chr8_3:67549754-67549773 Msa1304310:CDS 40.0%
CGAAAGATTCTTGAGAGATC+GGG + chr8_3:67549755-67549774 Msa1304310:CDS 40.0%
GGAATCTACTTATCTTCCAG+AGG + chr8_3:67549784-67549803 Msa1304310:CDS 40.0%
GTCAATCATTACAAGCTTCG+AGG + chr8_3:67549986-67550005 Msa1304310:CDS 40.0%
ATAAAGAGCTACAACCTAGG+TGG + chr8_3:67550013-67550032 Msa1304310:intron 40.0%
TAAAGAGCTACAACCTAGGT+GGG + chr8_3:67550014-67550033 Msa1304310:intron 40.0%
TCTTGCTAAAGATCTTCTCC+AGG + chr8_3:67550069-67550088 Msa1304310:CDS 40.0%
CATGCTAATGACCAATGCAT+AGG - chr8_3:67550107-67550126 None:intergenic 40.0%
! CTATGCATTGGTCATTAGCA+TGG + chr8_3:67550105-67550124 Msa1304310:CDS 40.0%
TTGGAAGACATTACTGGCAC+TGG + chr8_3:67548787-67548806 Msa1304310:CDS 45.0%
TGGAAGACATTACTGGCACT+GGG + chr8_3:67548788-67548807 Msa1304310:CDS 45.0%
CTTCCTGAACGAATGCATTG+TGG + chr8_3:67548956-67548975 Msa1304310:CDS 45.0%
CCTGGATGAATTTGGCATCA+AGG - chr8_3:67549363-67549382 None:intergenic 45.0%
CCTTGATGCCAAATTCATCC+AGG + chr8_3:67549360-67549379 Msa1304310:intron 45.0%
GGCAAGTTCCTGGATGAATT+TGG - chr8_3:67549371-67549390 None:intergenic 45.0%
CTTGAAATCAGGCAAGTTCC+TGG - chr8_3:67549381-67549400 None:intergenic 45.0%
CCACAAGTGGGGAAAGAAAA+AGG - chr8_3:67549466-67549485 None:intergenic 45.0%
! CCTTTTTCTTTCCCCACTTG+TGG + chr8_3:67549463-67549482 Msa1304310:intron 45.0%
AGCAATCAACACCACAAGTG+GGG - chr8_3:67549477-67549496 None:intergenic 45.0%
CAGCAATCAACACCACAAGT+GGG - chr8_3:67549478-67549497 None:intergenic 45.0%
AAAGCGTGGACAGGAAAACA+AGG - chr8_3:67549592-67549611 None:intergenic 45.0%
!! CTTTTTGACTCGTCCGAAAC+CGG + chr8_3:67549613-67549632 Msa1304310:CDS 45.0%
!! TCAACAAGGTACACCGGTTT+CGG - chr8_3:67549629-67549648 None:intergenic 45.0%
AATCGCGTAAGTGCACGAAA+AGG + chr8_3:67549672-67549691 Msa1304310:CDS 45.0%
ATTCTTGAGAGATCGGGACT+CGG + chr8_3:67549761-67549780 Msa1304310:CDS 45.0%
GGAAAGTTAAGAACAGCCTC+TGG - chr8_3:67549803-67549822 None:intergenic 45.0%
GAAGCTGAGACTGTGATGTT+CGG + chr8_3:67549854-67549873 Msa1304310:CDS 45.0%
TTGAAGATAGCGACGGAGTT+GGG - chr8_3:67549961-67549980 None:intergenic 45.0%
ATTGAAGATAGCGACGGAGT+TGG - chr8_3:67549962-67549981 None:intergenic 45.0%
!! CATAGGAATTAGGATTGGCC+TGG - chr8_3:67550090-67550109 None:intergenic 45.0%
TTGGAAGACATTACTGGCAC+TGG + chr8_3:67548787-67548806 Msa1304310:CDS 45.0%
TGGAAGACATTACTGGCACT+GGG + chr8_3:67548788-67548807 Msa1304310:CDS 45.0%
CTTCCTGAACGAATGCATTG+TGG + chr8_3:67548956-67548975 Msa1304310:CDS 45.0%
CCTGGATGAATTTGGCATCA+AGG - chr8_3:67549363-67549382 None:intergenic 45.0%
CCTTGATGCCAAATTCATCC+AGG + chr8_3:67549360-67549379 Msa1304310:intron 45.0%
GGCAAGTTCCTGGATGAATT+TGG - chr8_3:67549371-67549390 None:intergenic 45.0%
CTTGAAATCAGGCAAGTTCC+TGG - chr8_3:67549381-67549400 None:intergenic 45.0%
CCACAAGTGGGGAAAGAAAA+AGG - chr8_3:67549466-67549485 None:intergenic 45.0%
! CCTTTTTCTTTCCCCACTTG+TGG + chr8_3:67549463-67549482 Msa1304310:intron 45.0%
AGCAATCAACACCACAAGTG+GGG - chr8_3:67549477-67549496 None:intergenic 45.0%
CAGCAATCAACACCACAAGT+GGG - chr8_3:67549478-67549497 None:intergenic 45.0%
AAAGCGTGGACAGGAAAACA+AGG - chr8_3:67549592-67549611 None:intergenic 45.0%
!! CTTTTTGACTCGTCCGAAAC+CGG + chr8_3:67549613-67549632 Msa1304310:CDS 45.0%
!! TCAACAAGGTACACCGGTTT+CGG - chr8_3:67549629-67549648 None:intergenic 45.0%
AATCGCGTAAGTGCACGAAA+AGG + chr8_3:67549672-67549691 Msa1304310:CDS 45.0%
ATTCTTGAGAGATCGGGACT+CGG + chr8_3:67549761-67549780 Msa1304310:CDS 45.0%
GGAAAGTTAAGAACAGCCTC+TGG - chr8_3:67549803-67549822 None:intergenic 45.0%
GAAGCTGAGACTGTGATGTT+CGG + chr8_3:67549854-67549873 Msa1304310:CDS 45.0%
TTGAAGATAGCGACGGAGTT+GGG - chr8_3:67549961-67549980 None:intergenic 45.0%
ATTGAAGATAGCGACGGAGT+TGG - chr8_3:67549962-67549981 None:intergenic 45.0%
!! CATAGGAATTAGGATTGGCC+TGG - chr8_3:67550090-67550109 None:intergenic 45.0%
CACTCTCTCTCTCTCTCTCT+TGG + chr8_3:67548768-67548787 Msa1304310:CDS 50.0%
! ATTACTGGCACTGGGATCTC+TGG + chr8_3:67548796-67548815 Msa1304310:CDS 50.0%
!! TCTGGTGGGTTTGGTCTTCA+AGG + chr8_3:67548814-67548833 Msa1304310:CDS 50.0%
GCAGCAATCAACACCACAAG+TGG - chr8_3:67549479-67549498 None:intergenic 50.0%
GTGCACTTACGCGATTCTTC+AGG - chr8_3:67549668-67549687 None:intergenic 50.0%
TTCTTGAGAGATCGGGACTC+GGG + chr8_3:67549762-67549781 Msa1304310:CDS 50.0%
AGCTACAACCTAGGTGGGAT+GGG + chr8_3:67550019-67550038 Msa1304310:intron 50.0%
CACTCTCTCTCTCTCTCTCT+TGG + chr8_3:67548768-67548787 Msa1304310:CDS 50.0%
! ATTACTGGCACTGGGATCTC+TGG + chr8_3:67548796-67548815 Msa1304310:CDS 50.0%
!! TCTGGTGGGTTTGGTCTTCA+AGG + chr8_3:67548814-67548833 Msa1304310:CDS 50.0%
GCAGCAATCAACACCACAAG+TGG - chr8_3:67549479-67549498 None:intergenic 50.0%
GTGCACTTACGCGATTCTTC+AGG - chr8_3:67549668-67549687 None:intergenic 50.0%
TTCTTGAGAGATCGGGACTC+GGG + chr8_3:67549762-67549781 Msa1304310:CDS 50.0%
AGCTACAACCTAGGTGGGAT+GGG + chr8_3:67550019-67550038 Msa1304310:intron 50.0%
!! ACTGGGATCTCTGGTGGGTT+TGG + chr8_3:67548805-67548824 Msa1304310:CDS 55.0%
TCTTGAGAGATCGGGACTCG+GGG + chr8_3:67549763-67549782 Msa1304310:CDS 55.0%
GAGCTACAACCTAGGTGGGA+TGG + chr8_3:67550018-67550037 Msa1304310:intron 55.0%
!! ACTGGGATCTCTGGTGGGTT+TGG + chr8_3:67548805-67548824 Msa1304310:CDS 55.0%
TCTTGAGAGATCGGGACTCG+GGG + chr8_3:67549763-67549782 Msa1304310:CDS 55.0%
GAGCTACAACCTAGGTGGGA+TGG + chr8_3:67550018-67550037 Msa1304310:intron 55.0%
! ACTGGCACTGGGATCTCTGG+TGG + chr8_3:67548799-67548818 Msa1304310:CDS 60.0%
! CTGGCACTGGGATCTCTGGT+GGG + chr8_3:67548800-67548819 Msa1304310:CDS 60.0%
CACTGCAACCCATCCCACCT+AGG - chr8_3:67550030-67550049 None:intergenic 60.0%
!! AGGTGGGATGGGTTGCAGTG+CGG + chr8_3:67550030-67550049 Msa1304310:intron 60.0%
! ACTGGCACTGGGATCTCTGG+TGG + chr8_3:67548799-67548818 Msa1304310:CDS 60.0%
! CTGGCACTGGGATCTCTGGT+GGG + chr8_3:67548800-67548819 Msa1304310:CDS 60.0%
CACTGCAACCCATCCCACCT+AGG - chr8_3:67550030-67550049 None:intergenic 60.0%
!! AGGTGGGATGGGTTGCAGTG+CGG + chr8_3:67550030-67550049 Msa1304310:intron 60.0%
!! GGTGGGATGGGTTGCAGTGC+GGG + chr8_3:67550031-67550050 Msa1304310:intron 65.0%
!! GTGGGATGGGTTGCAGTGCG+GGG + chr8_3:67550032-67550051 Msa1304310:intron 65.0%
!! GGTGGGATGGGTTGCAGTGC+GGG + chr8_3:67550031-67550050 Msa1304310:intron 65.0%
!! GTGGGATGGGTTGCAGTGCG+GGG + chr8_3:67550032-67550051 Msa1304310:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 67548768 67550207 67548768 ID=Msa1304310;Name=Msa1304310
chr8_3 mRNA 67548768 67550207 67548768 ID=Msa1304310-mRNA-1;Parent=Msa1304310;Name=Msa1304310-mRNA-1;_AED=0.11;_eAED=0.19;_QI=0|0.25|0|1|0|0|5|0|299
chr8_3 exon 67548768 67548992 67548768 ID=Msa1304310-mRNA-1:exon:20750;Parent=Msa1304310-mRNA-1
chr8_3 exon 67549503 67549708 67549503 ID=Msa1304310-mRNA-1:exon:20751;Parent=Msa1304310-mRNA-1
chr8_3 exon 67549715 67549937 67549715 ID=Msa1304310-mRNA-1:exon:20752;Parent=Msa1304310-mRNA-1
chr8_3 exon 67549949 67550031 67549949 ID=Msa1304310-mRNA-1:exon:20753;Parent=Msa1304310-mRNA-1
chr8_3 exon 67550048 67550207 67550048 ID=Msa1304310-mRNA-1:exon:20754;Parent=Msa1304310-mRNA-1
chr8_3 CDS 67548768 67548992 67548768 ID=Msa1304310-mRNA-1:cds;Parent=Msa1304310-mRNA-1
chr8_3 CDS 67549503 67549708 67549503 ID=Msa1304310-mRNA-1:cds;Parent=Msa1304310-mRNA-1
chr8_3 CDS 67549715 67549937 67549715 ID=Msa1304310-mRNA-1:cds;Parent=Msa1304310-mRNA-1
chr8_3 CDS 67549949 67550031 67549949 ID=Msa1304310-mRNA-1:cds;Parent=Msa1304310-mRNA-1
chr8_3 CDS 67550048 67550207 67550048 ID=Msa1304310-mRNA-1:cds;Parent=Msa1304310-mRNA-1
Gene Sequence

>Msa1304310

CACTCTCTCTCTCTCTCTCTTGGAAGACATTACTGGCACTGGGATCTCTGGTGGGTTTGGTCTTCAAGGTACAATTTTGTGAACTGGGTTTTGTTTCACATCAACATTAACCTCTTCCCATGTTTTCCAATTTTTCATTACTCACTGCATGCTTCTTCTTTGTTTCACTTGTATCTATCTGCAATCTTCTTCCTGAACGAATGCATTGTGGATTTATACACAAAGATATCCACTTTTTCCATCCAAGACTTTTATGATATTTGGGAGCATCTACAATACAATTTGGTATCTGTCGTTTTTTGTTCAACTCTCCTTGTTTTCCTGTCCACGCTTTACTTTTTGACTCGTCCGAAACCGGTGTACCTTGTTGATTTCTCATGTTACAAGCCTGAAGAATCGCGTAAGTGCACGAAAAGGAAATTTATGGATCAGATGATCAGTACTTTTACGGAGGAAAATCTTGAATTTCAGCGAAAGATTCTTGAGAGATCGGGACTCGGGGAATCTACTTATCTTCCAGAGGCTGTTCTTAACTTTCCTCCTAATCCTTCAATGAAAGAAGCTAGAAAAGAAGCTGAGACTGTGATGTTCGGTGCCATTGATGAGCTATTTAGTAAGACCACAGTAAAGCCTAAAGATATAGGAATTCTGATTCTTGTTCAACCCAACTCCGTCGCTATCTTCAATGATTGTCAATCATTACAAGCTTCGAGGGAATATAAAGAGCTACAACCTAGTGCGGGGCTGATCTCGATTGATCTTGCTAAAGATCTTCTCCAGGCCAATCCTAATTCCTATGCATTGGTCATTAGCATGGAGAATATCACATTGAATTGGTATTTTGGAAACGATCGGTCGAAACTTGTTTCTAATTGTTTGTTTCGAATGGGAGGAGCT

Protein sequence

>Msa1304310

HSLSLSLGRHYWHWDLWWVWSSRYNFVNWVLFHININLFPCFPIFHYSLHASSLFHLYLSAIFFLNECIVDLYTKISTFSIQDFYDIWEHLQYNLVSVVFCSTLLVFLSTLYFLTRPKPVYLVDFSCYKPEESRKCTKRKFMDQMISTFTEENLEFQRKILERSGLGESTYLPEAVLNFPPNPSMKEARKEAETVMFGAIDELFSKTTVKPKDIGILILVQPNSVAIFNDCQSLQASREYKELQPSAGLISIDLAKDLLQANPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGA