Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305160 | sp|Q9BBS9|RPOB_LOTJA | 94.488 | 254 | 14 | 0 | 6 | 259 | 1 | 254 | 2.97e-169 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305160 | A0A2Z4KH34 | 99.228 | 259 | 2 | 0 | 1 | 259 | 1 | 259 | 1.04e-177 | 527 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1305100 | Msa1305160 | 0.820072 | 8.318679e-53 | -8.615850e-47 |
| Msa1305160 | Msa1354940 | 0.800879 | 1.171548e-48 | -8.615850e-47 |
| Msa1305160 | Msa1355120 | 0.838251 | 3.213191e-57 | -8.615850e-47 |
| Msa1305160 | Msa1380700 | 0.801090 | 1.060934e-48 | -8.615850e-47 |
| Msa1086110 | Msa1305160 | 0.800291 | 1.543714e-48 | -8.615850e-47 |
| Msa0582670 | Msa1305160 | 0.804627 | 1.972483e-49 | -8.615850e-47 |
| Msa0582680 | Msa1305160 | 0.812658 | 3.795074e-51 | -8.615850e-47 |
| Msa0931050 | Msa1305160 | 0.832337 | 1.001249e-55 | -8.615850e-47 |
| Msa0931120 | Msa1305160 | 0.803440 | 3.483357e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305160 | MtrunA17_Chr4g0016641 | 98.456 | 259 | 4 | 0 | 1 | 259 | 1 | 259 | 1.25e-179 | 522 |
| Msa1305160 | MtrunA17_CPg0493041 | 98.456 | 259 | 4 | 0 | 1 | 259 | 1 | 259 | 1.25e-179 | 522 |
| Msa1305160 | MtrunA17_Chr4g0015521 | 98.165 | 109 | 2 | 0 | 112 | 220 | 1 | 109 | 2.19e-72 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305160 | ATCG00190.1 | 86.614 | 254 | 34 | 0 | 6 | 259 | 1 | 254 | 1.07e-151 | 450 |
Find 53 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATATCCGCGGGATTAATT+TGG | 0.209384 | 8_3:-68485587 | Msa1305160:CDS |
| TTTCAACAAAGATGTGAATT+AGG | 0.212317 | 8_3:-68485076 | None:intergenic |
| CTGGGAACTTCTATAGTAAA+TGG | 0.231551 | 8_3:-68485501 | Msa1305160:CDS |
| ACATAAAGATTCAGGAAATA+TGG | 0.234879 | 8_3:+68485119 | None:intergenic |
| GTCAAAAGAAAATGCCATTT+TGG | 0.238441 | 8_3:-68485178 | Msa1305160:CDS |
| TTGATAGAAAAGCAAGGATA+TGG | 0.252693 | 8_3:-68485344 | Msa1305160:CDS |
| AATTCCGTACATAAAGATTC+AGG | 0.323867 | 8_3:+68485111 | None:intergenic |
| AAATTGTATTTGATTTAATC+CGG | 0.349804 | 8_3:+68485791 | None:intergenic |
| TTGTCGATAAAACTCCAAAA+TGG | 0.374690 | 8_3:+68485164 | None:intergenic |
| TGGGGAAATTGAAAATGCTT+GGG | 0.386996 | 8_3:-68485842 | Msa1305160:CDS |
| AATTGAAAATGCTTGGGGTT+GGG | 0.394420 | 8_3:-68485836 | Msa1305160:CDS |
| CATTCCTCTAATGAATTCCC+TGG | 0.423604 | 8_3:-68485520 | Msa1305160:CDS |
| ATGGGGAAATTGAAAATGCT+TGG | 0.425882 | 8_3:-68485843 | Msa1305160:CDS |
| TATGTCTTTCCTCAATGAAA+AGG | 0.429238 | 8_3:-68485217 | Msa1305160:CDS |
| ATGCTTGGGGTTGGGAATGA+AGG | 0.438598 | 8_3:-68485828 | Msa1305160:CDS |
| TGGCACAATAATATCCGATT+GGG | 0.439186 | 8_3:-68485388 | Msa1305160:CDS |
| CATAAAGATTCAGGAAATAT+GGG | 0.442441 | 8_3:+68485120 | None:intergenic |
| AATTGAATTTCAGTTATTTG+TGG | 0.443334 | 8_3:-68485688 | Msa1305160:CDS |
| GTTCCCAGGGAATTCATTAG+AGG | 0.450312 | 8_3:+68485516 | None:intergenic |
| AACGGAATTTCAGTCTATAC+TGG | 0.455189 | 8_3:-68485408 | Msa1305160:CDS |
| AAATTGAAAATGCTTGGGGT+TGG | 0.457271 | 8_3:-68485837 | Msa1305160:CDS |
| TTAAATCAAATACAATTTGA+AGG | 0.460401 | 8_3:-68485786 | Msa1305160:CDS |
| ATTTGTGGAAACATATCAAT+TGG | 0.470517 | 8_3:-68485673 | Msa1305160:CDS |
| CATTTACTATAGAAGTTCCC+AGG | 0.473812 | 8_3:+68485502 | None:intergenic |
| TCTAGTTCTATCATCAGCTA+TGG | 0.479428 | 8_3:-68485289 | Msa1305160:CDS |
| TATAGACTGAAATTCCGTTA+TGG | 0.489213 | 8_3:+68485412 | None:intergenic |
| CGTTCAGAGTTGGACCATAA+CGG | 0.495197 | 8_3:-68485426 | Msa1305160:CDS |
| ATTTCCTGAATCTTTATGTA+CGG | 0.495836 | 8_3:-68485115 | Msa1305160:CDS |
| TATCTATTATCGTTCAGAGT+TGG | 0.510246 | 8_3:-68485436 | Msa1305160:CDS |
| CTGGCACAATAATATCCGAT+TGG | 0.523488 | 8_3:-68485389 | Msa1305160:CDS |
| TGATAGAAAAGCAAGGATAT+GGG | 0.526528 | 8_3:-68485343 | Msa1305160:CDS |
| CGACAATTTGCTTGTGTAGG+CGG | 0.527978 | 8_3:-68485147 | Msa1305160:CDS |
| CTAGTTCTATCATCAGCTAT+GGG | 0.528023 | 8_3:-68485288 | Msa1305160:CDS |
| TAAATCAAATACAATTTGAA+GGG | 0.532005 | 8_3:-68485785 | Msa1305160:CDS |
| GGATATGGGCTCGTGTAAGT+AGG | 0.539731 | 8_3:-68485329 | Msa1305160:CDS |
| TAGAAATTGATAGAAAAGCA+AGG | 0.548786 | 8_3:-68485350 | Msa1305160:CDS |
| AATTGTATTTGATTTAATCC+GGG | 0.549785 | 8_3:+68485792 | None:intergenic |
| TATCGACAATTTGCTTGTGT+AGG | 0.554239 | 8_3:-68485150 | Msa1305160:CDS |
| TCTGAATTATATATATCCGC+GGG | 0.562320 | 8_3:-68485597 | Msa1305160:CDS |
| AATCAAATATTGCAAAGCCC+TGG | 0.569397 | 8_3:-68485459 | Msa1305160:CDS |
| CACAATAATATCCGATTGGG+GGG | 0.571960 | 8_3:-68485385 | Msa1305160:CDS |
| CTCTGAATTATATATATCCG+CGG | 0.577667 | 8_3:-68485598 | Msa1305160:CDS |
| GTCTTTCCTCAATGAAAAGG+AGG | 0.586724 | 8_3:-68485214 | Msa1305160:CDS |
| CGCGGATATATATAATTCAG+AGG | 0.586801 | 8_3:+68485599 | None:intergenic |
| ATTTACTATAGAAGTTCCCA+GGG | 0.587463 | 8_3:+68485503 | None:intergenic |
| TCTGAACGATAATAGATACC+AGG | 0.589979 | 8_3:+68485441 | None:intergenic |
| ATTCCTCTAATGAATTCCCT+GGG | 0.606971 | 8_3:-68485519 | Msa1305160:CDS |
| GGCACAATAATATCCGATTG+GGG | 0.627268 | 8_3:-68485387 | Msa1305160:CDS |
| GAAGGAATGTCTACACTACC+CGG | 0.627870 | 8_3:-68485810 | Msa1305160:CDS |
| ACAATAATATCCGATTGGGG+GGG | 0.637953 | 8_3:-68485384 | Msa1305160:CDS |
| CTGAACGATAATAGATACCA+GGG | 0.641198 | 8_3:+68485442 | None:intergenic |
| GGGGAAATTGAAAATGCTTG+GGG | 0.643696 | 8_3:-68485841 | Msa1305160:CDS |
| GCACAATAATATCCGATTGG+GGG | 0.683666 | 8_3:-68485386 | Msa1305160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTGTATTTGATTTAATC+CGG | + | chr8_3:68485132-68485151 | None:intergenic | 15.0% |
| !! | TTAAATCAAATACAATTTGA+AGG | - | chr8_3:68485134-68485153 | Msa1305160:CDS | 15.0% |
| !! | TAAATCAAATACAATTTGAA+GGG | - | chr8_3:68485135-68485154 | Msa1305160:CDS | 15.0% |
| !!! | CAATAAAAATAATTTGTTCT+TGG | + | chr8_3:68485376-68485395 | None:intergenic | 15.0% |
| !!! | CAAGAACAAATTATTTTTAT+TGG | - | chr8_3:68485374-68485393 | Msa1305160:CDS | 15.0% |
| !!! | AAATTGTATTTGATTTAATC+CGG | + | chr8_3:68485132-68485151 | None:intergenic | 15.0% |
| !! | TTAAATCAAATACAATTTGA+AGG | - | chr8_3:68485134-68485153 | Msa1305160:CDS | 15.0% |
| !! | TAAATCAAATACAATTTGAA+GGG | - | chr8_3:68485135-68485154 | Msa1305160:CDS | 15.0% |
| !!! | CAATAAAAATAATTTGTTCT+TGG | + | chr8_3:68485376-68485395 | None:intergenic | 15.0% |
| !!! | CAAGAACAAATTATTTTTAT+TGG | - | chr8_3:68485374-68485393 | Msa1305160:CDS | 15.0% |
| !!! | AATTGTATTTGATTTAATCC+GGG | + | chr8_3:68485131-68485150 | None:intergenic | 20.0% |
| !! | AATTGAATTTCAGTTATTTG+TGG | - | chr8_3:68485232-68485251 | Msa1305160:CDS | 20.0% |
| !!! | ATTAATTTGGAAAAACAGTA+GGG | - | chr8_3:68485346-68485365 | Msa1305160:CDS | 20.0% |
| !! | AAAAGGAGGAAAAAAAAATA+GGG | - | chr8_3:68485720-68485739 | Msa1305160:CDS | 20.0% |
| !!! | AATTGTATTTGATTTAATCC+GGG | + | chr8_3:68485131-68485150 | None:intergenic | 20.0% |
| !! | AATTGAATTTCAGTTATTTG+TGG | - | chr8_3:68485232-68485251 | Msa1305160:CDS | 20.0% |
| !!! | ATTAATTTGGAAAAACAGTA+GGG | - | chr8_3:68485346-68485365 | Msa1305160:CDS | 20.0% |
| !! | AAAAGGAGGAAAAAAAAATA+GGG | - | chr8_3:68485720-68485739 | Msa1305160:CDS | 20.0% |
| ! | GTTTCCAAAAATTGAAGATA+CGG | - | chr8_3:68485202-68485221 | Msa1305160:CDS | 25.0% |
| ! | ATTTGTGGAAACATATCAAT+TGG | - | chr8_3:68485247-68485266 | Msa1305160:CDS | 25.0% |
| !! | GATTAATTTGGAAAAACAGT+AGG | - | chr8_3:68485345-68485364 | Msa1305160:CDS | 25.0% |
| ! | TAGAAATTGATAGAAAAGCA+AGG | - | chr8_3:68485570-68485589 | Msa1305160:CDS | 25.0% |
| ! | AGGAAAGACATAAAAATTTC+GGG | + | chr8_3:68485695-68485714 | None:intergenic | 25.0% |
| ! | GAGGAAAGACATAAAAATTT+CGG | + | chr8_3:68485696-68485715 | None:intergenic | 25.0% |
| ! | GAAAAGGAGGAAAAAAAAAT+AGG | - | chr8_3:68485719-68485738 | Msa1305160:CDS | 25.0% |
| ! | CATAAAGATTCAGGAAATAT+GGG | + | chr8_3:68485803-68485822 | None:intergenic | 25.0% |
| ! | ACATAAAGATTCAGGAAATA+TGG | + | chr8_3:68485804-68485823 | None:intergenic | 25.0% |
| ! | ATTTCCTGAATCTTTATGTA+CGG | - | chr8_3:68485805-68485824 | Msa1305160:CDS | 25.0% |
| ! | GTTTCCAAAAATTGAAGATA+CGG | - | chr8_3:68485202-68485221 | Msa1305160:CDS | 25.0% |
| ! | ATTTGTGGAAACATATCAAT+TGG | - | chr8_3:68485247-68485266 | Msa1305160:CDS | 25.0% |
| !! | GATTAATTTGGAAAAACAGT+AGG | - | chr8_3:68485345-68485364 | Msa1305160:CDS | 25.0% |
| ! | TAGAAATTGATAGAAAAGCA+AGG | - | chr8_3:68485570-68485589 | Msa1305160:CDS | 25.0% |
| ! | AGGAAAGACATAAAAATTTC+GGG | + | chr8_3:68485695-68485714 | None:intergenic | 25.0% |
| ! | GAGGAAAGACATAAAAATTT+CGG | + | chr8_3:68485696-68485715 | None:intergenic | 25.0% |
| ! | GAAAAGGAGGAAAAAAAAAT+AGG | - | chr8_3:68485719-68485738 | Msa1305160:CDS | 25.0% |
| ! | CATAAAGATTCAGGAAATAT+GGG | + | chr8_3:68485803-68485822 | None:intergenic | 25.0% |
| ! | ACATAAAGATTCAGGAAATA+TGG | + | chr8_3:68485804-68485823 | None:intergenic | 25.0% |
| ! | ATTTCCTGAATCTTTATGTA+CGG | - | chr8_3:68485805-68485824 | Msa1305160:CDS | 25.0% |
| !! | GGTTTTGTAGATTCATTGAT+CGG | - | chr8_3:68485156-68485175 | Msa1305160:CDS | 30.0% |
| ! | GTTTTGTAGATTCATTGATC+GGG | - | chr8_3:68485157-68485176 | Msa1305160:CDS | 30.0% |
| ! | TTTTGTAGATTCATTGATCG+GGG | - | chr8_3:68485158-68485177 | Msa1305160:CDS | 30.0% |
| ! | TGATCCGTATCTTCAATTTT+TGG | + | chr8_3:68485209-68485228 | None:intergenic | 30.0% |
| ! | GCATCTTTTTCTTTTATCGA+GGG | + | chr8_3:68485278-68485297 | None:intergenic | 30.0% |
| ! | AGCATCTTTTTCTTTTATCG+AGG | + | chr8_3:68485279-68485298 | None:intergenic | 30.0% |
| CTCTGAATTATATATATCCG+CGG | - | chr8_3:68485322-68485341 | Msa1305160:CDS | 30.0% | |
| TCTGAATTATATATATCCGC+GGG | - | chr8_3:68485323-68485342 | Msa1305160:CDS | 30.0% | |
| ATTTACTATAGAAGTTCCCA+GGG | + | chr8_3:68485420-68485439 | None:intergenic | 30.0% | |
| TATCTATTATCGTTCAGAGT+TGG | - | chr8_3:68485484-68485503 | Msa1305160:CDS | 30.0% | |
| TATAGACTGAAATTCCGTTA+TGG | + | chr8_3:68485511-68485530 | None:intergenic | 30.0% | |
| TTGATAGAAAAGCAAGGATA+TGG | - | chr8_3:68485576-68485595 | Msa1305160:CDS | 30.0% | |
| TGATAGAAAAGCAAGGATAT+GGG | - | chr8_3:68485577-68485596 | Msa1305160:CDS | 30.0% | |
| GGAAAGACATAAAAATTTCG+GGG | + | chr8_3:68485694-68485713 | None:intergenic | 30.0% | |
| TATGTCTTTCCTCAATGAAA+AGG | - | chr8_3:68485703-68485722 | Msa1305160:CDS | 30.0% | |
| !!! | TTTTTTCCTCCTTTTCATTG+AGG | + | chr8_3:68485715-68485734 | None:intergenic | 30.0% |
| !! | GTCAAAAGAAAATGCCATTT+TGG | - | chr8_3:68485742-68485761 | Msa1305160:CDS | 30.0% |
| TTGTCGATAAAACTCCAAAA+TGG | + | chr8_3:68485759-68485778 | None:intergenic | 30.0% | |
| AATTCCGTACATAAAGATTC+AGG | + | chr8_3:68485812-68485831 | None:intergenic | 30.0% | |
| !! | GGTTTTGTAGATTCATTGAT+CGG | - | chr8_3:68485156-68485175 | Msa1305160:CDS | 30.0% |
| ! | GTTTTGTAGATTCATTGATC+GGG | - | chr8_3:68485157-68485176 | Msa1305160:CDS | 30.0% |
| ! | TTTTGTAGATTCATTGATCG+GGG | - | chr8_3:68485158-68485177 | Msa1305160:CDS | 30.0% |
| ! | TGATCCGTATCTTCAATTTT+TGG | + | chr8_3:68485209-68485228 | None:intergenic | 30.0% |
| ! | GCATCTTTTTCTTTTATCGA+GGG | + | chr8_3:68485278-68485297 | None:intergenic | 30.0% |
| ! | AGCATCTTTTTCTTTTATCG+AGG | + | chr8_3:68485279-68485298 | None:intergenic | 30.0% |
| CTCTGAATTATATATATCCG+CGG | - | chr8_3:68485322-68485341 | Msa1305160:CDS | 30.0% | |
| TCTGAATTATATATATCCGC+GGG | - | chr8_3:68485323-68485342 | Msa1305160:CDS | 30.0% | |
| ATTTACTATAGAAGTTCCCA+GGG | + | chr8_3:68485420-68485439 | None:intergenic | 30.0% | |
| TATCTATTATCGTTCAGAGT+TGG | - | chr8_3:68485484-68485503 | Msa1305160:CDS | 30.0% | |
| TATAGACTGAAATTCCGTTA+TGG | + | chr8_3:68485511-68485530 | None:intergenic | 30.0% | |
| TTGATAGAAAAGCAAGGATA+TGG | - | chr8_3:68485576-68485595 | Msa1305160:CDS | 30.0% | |
| TGATAGAAAAGCAAGGATAT+GGG | - | chr8_3:68485577-68485596 | Msa1305160:CDS | 30.0% | |
| GGAAAGACATAAAAATTTCG+GGG | + | chr8_3:68485694-68485713 | None:intergenic | 30.0% | |
| TATGTCTTTCCTCAATGAAA+AGG | - | chr8_3:68485703-68485722 | Msa1305160:CDS | 30.0% | |
| !!! | TTTTTTCCTCCTTTTCATTG+AGG | + | chr8_3:68485715-68485734 | None:intergenic | 30.0% |
| !! | GTCAAAAGAAAATGCCATTT+TGG | - | chr8_3:68485742-68485761 | Msa1305160:CDS | 30.0% |
| TTGTCGATAAAACTCCAAAA+TGG | + | chr8_3:68485759-68485778 | None:intergenic | 30.0% | |
| AATTCCGTACATAAAGATTC+AGG | + | chr8_3:68485812-68485831 | None:intergenic | 30.0% | |
| ATGGGGAAATTGAAAATGCT+TGG | - | chr8_3:68485077-68485096 | Msa1305160:CDS | 35.0% | |
| TGGGGAAATTGAAAATGCTT+GGG | - | chr8_3:68485078-68485097 | Msa1305160:CDS | 35.0% | |
| AAATTGAAAATGCTTGGGGT+TGG | - | chr8_3:68485083-68485102 | Msa1305160:CDS | 35.0% | |
| AATTGAAAATGCTTGGGGTT+GGG | - | chr8_3:68485084-68485103 | Msa1305160:CDS | 35.0% | |
| CGCGGATATATATAATTCAG+AGG | + | chr8_3:68485324-68485343 | None:intergenic | 35.0% | |
| ATATATCCGCGGGATTAATT+TGG | - | chr8_3:68485333-68485352 | Msa1305160:CDS | 35.0% | |
| ! | GTTTTTCCAAATTAATCCCG+CGG | + | chr8_3:68485342-68485361 | None:intergenic | 35.0% |
| ATTCCTCTAATGAATTCCCT+GGG | - | chr8_3:68485401-68485420 | Msa1305160:CDS | 35.0% | |
| CATTTACTATAGAAGTTCCC+AGG | + | chr8_3:68485421-68485440 | None:intergenic | 35.0% | |
| CTGGGAACTTCTATAGTAAA+TGG | - | chr8_3:68485419-68485438 | Msa1305160:CDS | 35.0% | |
| AATCAAATATTGCAAAGCCC+TGG | - | chr8_3:68485461-68485480 | Msa1305160:CDS | 35.0% | |
| CTGAACGATAATAGATACCA+GGG | + | chr8_3:68485481-68485500 | None:intergenic | 35.0% | |
| TCTGAACGATAATAGATACC+AGG | + | chr8_3:68485482-68485501 | None:intergenic | 35.0% | |
| AACGGAATTTCAGTCTATAC+TGG | - | chr8_3:68485512-68485531 | Msa1305160:CDS | 35.0% | |
| TGGCACAATAATATCCGATT+GGG | - | chr8_3:68485532-68485551 | Msa1305160:CDS | 35.0% | |
| !! | TCTAGTTCTATCATCAGCTA+TGG | - | chr8_3:68485631-68485650 | Msa1305160:CDS | 35.0% |
| !! | CTAGTTCTATCATCAGCTAT+GGG | - | chr8_3:68485632-68485651 | Msa1305160:CDS | 35.0% |
| ! | TATCGACAATTTGCTTGTGT+AGG | - | chr8_3:68485770-68485789 | Msa1305160:CDS | 35.0% |
| ATGGGGAAATTGAAAATGCT+TGG | - | chr8_3:68485077-68485096 | Msa1305160:CDS | 35.0% | |
| TGGGGAAATTGAAAATGCTT+GGG | - | chr8_3:68485078-68485097 | Msa1305160:CDS | 35.0% | |
| AAATTGAAAATGCTTGGGGT+TGG | - | chr8_3:68485083-68485102 | Msa1305160:CDS | 35.0% | |
| AATTGAAAATGCTTGGGGTT+GGG | - | chr8_3:68485084-68485103 | Msa1305160:CDS | 35.0% | |
| CGCGGATATATATAATTCAG+AGG | + | chr8_3:68485324-68485343 | None:intergenic | 35.0% | |
| ATATATCCGCGGGATTAATT+TGG | - | chr8_3:68485333-68485352 | Msa1305160:CDS | 35.0% | |
| ! | GTTTTTCCAAATTAATCCCG+CGG | + | chr8_3:68485342-68485361 | None:intergenic | 35.0% |
| ATTCCTCTAATGAATTCCCT+GGG | - | chr8_3:68485401-68485420 | Msa1305160:CDS | 35.0% | |
| CATTTACTATAGAAGTTCCC+AGG | + | chr8_3:68485421-68485440 | None:intergenic | 35.0% | |
| CTGGGAACTTCTATAGTAAA+TGG | - | chr8_3:68485419-68485438 | Msa1305160:CDS | 35.0% | |
| AATCAAATATTGCAAAGCCC+TGG | - | chr8_3:68485461-68485480 | Msa1305160:CDS | 35.0% | |
| CTGAACGATAATAGATACCA+GGG | + | chr8_3:68485481-68485500 | None:intergenic | 35.0% | |
| TCTGAACGATAATAGATACC+AGG | + | chr8_3:68485482-68485501 | None:intergenic | 35.0% | |
| AACGGAATTTCAGTCTATAC+TGG | - | chr8_3:68485512-68485531 | Msa1305160:CDS | 35.0% | |
| TGGCACAATAATATCCGATT+GGG | - | chr8_3:68485532-68485551 | Msa1305160:CDS | 35.0% | |
| !! | TCTAGTTCTATCATCAGCTA+TGG | - | chr8_3:68485631-68485650 | Msa1305160:CDS | 35.0% |
| !! | CTAGTTCTATCATCAGCTAT+GGG | - | chr8_3:68485632-68485651 | Msa1305160:CDS | 35.0% |
| ! | TATCGACAATTTGCTTGTGT+AGG | - | chr8_3:68485770-68485789 | Msa1305160:CDS | 35.0% |
| GGGGAAATTGAAAATGCTTG+GGG | - | chr8_3:68485079-68485098 | Msa1305160:CDS | 40.0% | |
| CATTCCTCTAATGAATTCCC+TGG | - | chr8_3:68485400-68485419 | Msa1305160:CDS | 40.0% | |
| CTGGCACAATAATATCCGAT+TGG | - | chr8_3:68485531-68485550 | Msa1305160:CDS | 40.0% | |
| GGCACAATAATATCCGATTG+GGG | - | chr8_3:68485533-68485552 | Msa1305160:CDS | 40.0% | |
| GCACAATAATATCCGATTGG+GGG | - | chr8_3:68485534-68485553 | Msa1305160:CDS | 40.0% | |
| CACAATAATATCCGATTGGG+GGG | - | chr8_3:68485535-68485554 | Msa1305160:CDS | 40.0% | |
| ACAATAATATCCGATTGGGG+GGG | - | chr8_3:68485536-68485555 | Msa1305160:CDS | 40.0% | |
| GTCTTTCCTCAATGAAAAGG+AGG | - | chr8_3:68485706-68485725 | Msa1305160:CDS | 40.0% | |
| GGGGAAATTGAAAATGCTTG+GGG | - | chr8_3:68485079-68485098 | Msa1305160:CDS | 40.0% | |
| CATTCCTCTAATGAATTCCC+TGG | - | chr8_3:68485400-68485419 | Msa1305160:CDS | 40.0% | |
| CTGGCACAATAATATCCGAT+TGG | - | chr8_3:68485531-68485550 | Msa1305160:CDS | 40.0% | |
| GGCACAATAATATCCGATTG+GGG | - | chr8_3:68485533-68485552 | Msa1305160:CDS | 40.0% | |
| GCACAATAATATCCGATTGG+GGG | - | chr8_3:68485534-68485553 | Msa1305160:CDS | 40.0% | |
| CACAATAATATCCGATTGGG+GGG | - | chr8_3:68485535-68485554 | Msa1305160:CDS | 40.0% | |
| ACAATAATATCCGATTGGGG+GGG | - | chr8_3:68485536-68485555 | Msa1305160:CDS | 40.0% | |
| GTCTTTCCTCAATGAAAAGG+AGG | - | chr8_3:68485706-68485725 | Msa1305160:CDS | 40.0% | |
| GAAGGAATGTCTACACTACC+CGG | - | chr8_3:68485110-68485129 | Msa1305160:CDS | 45.0% | |
| GTTCCCAGGGAATTCATTAG+AGG | + | chr8_3:68485407-68485426 | None:intergenic | 45.0% | |
| CGTTCAGAGTTGGACCATAA+CGG | - | chr8_3:68485494-68485513 | Msa1305160:CDS | 45.0% | |
| ! | CGACAATTTGCTTGTGTAGG+CGG | - | chr8_3:68485773-68485792 | Msa1305160:CDS | 45.0% |
| GAAGGAATGTCTACACTACC+CGG | - | chr8_3:68485110-68485129 | Msa1305160:CDS | 45.0% | |
| GTTCCCAGGGAATTCATTAG+AGG | + | chr8_3:68485407-68485426 | None:intergenic | 45.0% | |
| CGTTCAGAGTTGGACCATAA+CGG | - | chr8_3:68485494-68485513 | Msa1305160:CDS | 45.0% | |
| ! | CGACAATTTGCTTGTGTAGG+CGG | - | chr8_3:68485773-68485792 | Msa1305160:CDS | 45.0% |
| ATGCTTGGGGTTGGGAATGA+AGG | - | chr8_3:68485092-68485111 | Msa1305160:CDS | 50.0% | |
| CTCTAATCTTCCCCCCCAAT+CGG | + | chr8_3:68485549-68485568 | None:intergenic | 50.0% | |
| GGATATGGGCTCGTGTAAGT+AGG | - | chr8_3:68485591-68485610 | Msa1305160:CDS | 50.0% | |
| ATGCTTGGGGTTGGGAATGA+AGG | - | chr8_3:68485092-68485111 | Msa1305160:CDS | 50.0% | |
| CTCTAATCTTCCCCCCCAAT+CGG | + | chr8_3:68485549-68485568 | None:intergenic | 50.0% | |
| GGATATGGGCTCGTGTAAGT+AGG | - | chr8_3:68485591-68485610 | Msa1305160:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 68485077 | 68485865 | 68485077 | ID=Msa1305160;Name=Msa1305160 |
| chr8_3 | mRNA | 68485077 | 68485865 | 68485077 | ID=Msa1305160-mRNA-1;Parent=Msa1305160;Name=Msa1305160-mRNA-1;_AED=0.40;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|262 |
| chr8_3 | exon | 68485077 | 68485865 | 68485077 | ID=Msa1305160-mRNA-1:exon:21193;Parent=Msa1305160-mRNA-1 |
| chr8_3 | CDS | 68485077 | 68485865 | 68485077 | ID=Msa1305160-mRNA-1:cds;Parent=Msa1305160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
