Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305890 | sp|Q9C6X2|SCAM4_ARATH | 72.031 | 261 | 58 | 5 | 1 | 251 | 1 | 256 | 2.78e-133 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305890 | G7K9I4 | 93.822 | 259 | 8 | 1 | 1 | 251 | 1 | 259 | 5.83e-176 | 494 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0719400 | Msa1305890 | 0.881646 | 2.019243e-70 | -8.615850e-47 |
| Msa0789650 | Msa1305890 | 0.856902 | 2.349797e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305890 | MtrunA17_Chr5g0409961 | 93.822 | 259 | 8 | 1 | 1 | 251 | 1 | 259 | 1.12e-179 | 494 |
| Msa1305890 | MtrunA17_Chr2g0281411 | 60.837 | 263 | 90 | 3 | 1 | 251 | 1 | 262 | 1.28e-117 | 338 |
| Msa1305890 | MtrunA17_Chr4g0022441 | 56.643 | 286 | 83 | 6 | 1 | 251 | 1 | 280 | 2.21e-104 | 305 |
| Msa1305890 | MtrunA17_Chr4g0047981 | 54.828 | 290 | 87 | 5 | 1 | 251 | 1 | 285 | 2.91e-100 | 294 |
| Msa1305890 | MtrunA17_Chr2g0323921 | 57.282 | 103 | 43 | 1 | 149 | 251 | 73 | 174 | 4.34e-34 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305890 | AT1G32050.1 | 72.031 | 261 | 58 | 5 | 1 | 251 | 1 | 256 | 2.82e-134 | 379 |
| Msa1305890 | AT1G61250.1 | 62.264 | 265 | 84 | 5 | 1 | 251 | 1 | 263 | 9.61e-117 | 336 |
| Msa1305890 | AT1G61250.2 | 62.357 | 263 | 83 | 5 | 1 | 249 | 1 | 261 | 5.94e-115 | 331 |
| Msa1305890 | AT1G11180.1 | 59.176 | 267 | 91 | 5 | 1 | 251 | 1 | 265 | 1.24e-108 | 315 |
| Msa1305890 | AT1G11180.3 | 58.915 | 258 | 88 | 5 | 1 | 242 | 1 | 256 | 5.45e-103 | 301 |
| Msa1305890 | AT1G11180.2 | 56.089 | 271 | 88 | 5 | 1 | 242 | 1 | 269 | 8.62e-101 | 295 |
| Msa1305890 | AT2G20840.1 | 58.397 | 262 | 92 | 5 | 1 | 251 | 1 | 256 | 5.36e-100 | 293 |
| Msa1305890 | AT1G03550.1 | 57.143 | 259 | 94 | 4 | 5 | 251 | 4 | 257 | 1.71e-98 | 289 |
| Msa1305890 | AT1G03550.4 | 57.198 | 257 | 93 | 4 | 5 | 249 | 4 | 255 | 8.36e-97 | 284 |
| Msa1305890 | AT2G20840.3 | 64.019 | 214 | 68 | 2 | 46 | 251 | 1 | 213 | 8.93e-93 | 273 |
| Msa1305890 | AT2G20840.2 | 64.019 | 214 | 68 | 2 | 46 | 251 | 1 | 213 | 8.93e-93 | 273 |
| Msa1305890 | AT1G03550.5 | 56.356 | 236 | 86 | 4 | 5 | 228 | 4 | 234 | 1.78e-85 | 255 |
| Msa1305890 | AT1G03550.3 | 59.898 | 197 | 71 | 1 | 63 | 251 | 2 | 198 | 5.09e-81 | 243 |
| Msa1305890 | AT1G03550.6 | 57.991 | 219 | 75 | 4 | 5 | 211 | 4 | 217 | 2.27e-80 | 241 |
| Msa1305890 | AT1G03550.2 | 59.783 | 184 | 66 | 1 | 76 | 251 | 15 | 198 | 9.19e-75 | 227 |
| Msa1305890 | AT1G03550.7 | 55.051 | 198 | 72 | 4 | 5 | 190 | 4 | 196 | 3.46e-71 | 217 |
Find 64 sgRNAs with CRISPR-Local
Find 407 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTTAGAATACCGAAAA+TGG | 0.190870 | 8_4:-224794 | None:intergenic |
| TCTAAGCTTGTGGGTAATTC+AGG | 0.236939 | 8_4:+230328 | Msa1305890:CDS |
| ATATTCTATTTGATTGGATT+TGG | 0.268724 | 8_4:+230284 | Msa1305890:CDS |
| CTTATTTGGAACGCGGGATT+TGG | 0.321167 | 8_4:-224619 | None:intergenic |
| TTACAGATATTCTATTTGAT+TGG | 0.329574 | 8_4:+230278 | Msa1305890:intron |
| TTCCCCTTTCATATGTGCTT+TGG | 0.332783 | 8_4:+228078 | Msa1305890:CDS |
| TGCTCAGAGACTGCAATATT+CGG | 0.352061 | 8_4:+227463 | Msa1305890:CDS |
| TCTTCTTCTTCGAAAGGATT+GGG | 0.387663 | 8_4:-224764 | None:intergenic |
| CGTGGGAAGCTGATTTAAAA+AGG | 0.387765 | 8_4:+226999 | Msa1305890:CDS |
| TTCTTCTTCTTCGAAAGGAT+TGG | 0.394848 | 8_4:-224765 | None:intergenic |
| TCTCAGACCACGTATTGGTT+GGG | 0.395551 | 8_4:+229376 | Msa1305890:CDS |
| TTTCATATGTGCTTTGGTAC+AGG | 0.399767 | 8_4:+228084 | Msa1305890:CDS |
| GCATCCGAACCAGCTGGCTT+TGG | 0.401082 | 8_4:+226804 | Msa1305890:CDS |
| TCGGCCTTTGCTAGTTGGTT+GGG | 0.403870 | 8_4:+227482 | Msa1305890:CDS |
| TTGACCAAAGCCAGCTGGTT+CGG | 0.405801 | 8_4:-226808 | None:intergenic |
| GGGATCGTGGTTGCGATTCA+TGG | 0.420493 | 8_4:-224744 | None:intergenic |
| TGCAGTCTCTGAGCATGAAC+TGG | 0.423052 | 8_4:-227455 | None:intergenic |
| GCAATATCATGGTGAATGAT+TGG | 0.423895 | 8_4:-227422 | None:intergenic |
| GGAGGCTCTTCTAAGCTTGT+GGG | 0.431780 | 8_4:+230319 | Msa1305890:CDS |
| AATATTCGGCCTTTGCTAGT+TGG | 0.435604 | 8_4:+227477 | Msa1305890:CDS |
| TGGAGGCTCTTCTAAGCTTG+TGG | 0.440195 | 8_4:+230318 | Msa1305890:CDS |
| TTCGGCCTTTGCTAGTTGGT+TGG | 0.440836 | 8_4:+227481 | Msa1305890:CDS |
| TTCTCAGACCACGTATTGGT+TGG | 0.447981 | 8_4:+229375 | Msa1305890:CDS |
| GCAGTGATTTATGCGCTGCT+TGG | 0.452548 | 8_4:+228053 | Msa1305890:intron |
| GGCCAATTCTTATCATCAAC+GGG | 0.453219 | 8_4:-227389 | None:intergenic |
| CAGTGATTTATGCGCTGCTT+GGG | 0.460483 | 8_4:+228054 | Msa1305890:intron |
| CTTCGAAAGGATTGGGATCG+TGG | 0.477745 | 8_4:-224757 | None:intergenic |
| TTTACCTCATAGCACGATAG+AGG | 0.479958 | 8_4:-228109 | None:intergenic |
| AGCATGAACTGGAATCTCAT+TGG | 0.500620 | 8_4:-227444 | None:intergenic |
| CAATATCATGGTGAATGATT+GGG | 0.504058 | 8_4:-227421 | None:intergenic |
| TTGACTTCTTCTTCTTCGAA+AGG | 0.504243 | 8_4:-224770 | None:intergenic |
| TGCCCGTTGATGATAAGAAT+TGG | 0.505693 | 8_4:+227387 | Msa1305890:CDS |
| CTCAGACCACGTATTGGTTG+GGG | 0.512971 | 8_4:+229377 | Msa1305890:CDS |
| TGCGACAGTTGACATTCCTC+TGG | 0.513711 | 8_4:+226839 | Msa1305890:CDS |
| GAATCTCATTGGCAATATCA+TGG | 0.518037 | 8_4:-227433 | None:intergenic |
| GTACCAAAGCACATATGAAA+GGG | 0.521793 | 8_4:-228081 | None:intergenic |
| AGTGATTCTCTCAACACATT+CGG | 0.525747 | 8_4:+224686 | Msa1305890:five_prime_UTR |
| AGAGAAGATTCTGTTGCTAA+AGG | 0.528658 | 8_4:+227247 | Msa1305890:CDS |
| AGGTCAAGAGCTAGCAGCGT+GGG | 0.541856 | 8_4:+226982 | Msa1305890:CDS |
| GGCCCCTCTATCGTGCTATG+AGG | 0.544924 | 8_4:+228105 | Msa1305890:CDS |
| GAATTCTTACAGAATGGTGT+TGG | 0.545034 | 8_4:+226756 | Msa1305890:intron |
| TGTCTTTGACCAAAGCCAGC+TGG | 0.546049 | 8_4:-226813 | None:intergenic |
| GTCTGTTGGATCAGAGGCGG+CGG | 0.547601 | 8_4:+227921 | Msa1305890:CDS |
| ATAGTGCACTGAAGTTCAGT+TGG | 0.551173 | 8_4:+228318 | Msa1305890:CDS |
| TGTGTTCTCAGACCACGTAT+TGG | 0.565510 | 8_4:+229371 | Msa1305890:CDS |
| AAAATCACGTGTTCCACCGT+TGG | 0.568521 | 8_4:+226782 | Msa1305890:CDS |
| CCGTTGGCATCCGAACCAGC+TGG | 0.574974 | 8_4:+226798 | Msa1305890:CDS |
| AGGCCAATTCTTATCATCAA+CGG | 0.578386 | 8_4:-227390 | None:intergenic |
| TTTCTGCTTATTTGGAACGC+GGG | 0.580576 | 8_4:-224625 | None:intergenic |
| TTACCTCATAGCACGATAGA+GGG | 0.588141 | 8_4:-228108 | None:intergenic |
| GTGATTGTCTGTTGGATCAG+AGG | 0.588719 | 8_4:+227915 | Msa1305890:CDS |
| TGTACCAAAGCACATATGAA+AGG | 0.589686 | 8_4:-228082 | None:intergenic |
| TAGTTGCAGTGATTGTCTGT+TGG | 0.598374 | 8_4:+227907 | Msa1305890:CDS |
| CCAGCTGGTTCGGATGCCAA+CGG | 0.610993 | 8_4:-226798 | None:intergenic |
| AGAACACATCAATCGCTGCA+AGG | 0.643697 | 8_4:-229356 | None:intergenic |
| ATTGTCTGTTGGATCAGAGG+CGG | 0.648321 | 8_4:+227918 | Msa1305890:CDS |
| GCTGGTTCGGATGCCAACGG+TGG | 0.652702 | 8_4:-226795 | None:intergenic |
| CATACCCAACCAACTAGCAA+AGG | 0.654872 | 8_4:-227486 | None:intergenic |
| ATTACATTTGAAGTATCCAG+AGG | 0.656460 | 8_4:-226855 | None:intergenic |
| TACCAAAGCACATATGAAAG+GGG | 0.656856 | 8_4:-228080 | None:intergenic |
| AACTTACCCCAACCAATACG+TGG | 0.657661 | 8_4:-229383 | None:intergenic |
| TACCTCATAGCACGATAGAG+GGG | 0.671746 | 8_4:-228107 | None:intergenic |
| AAGGTCAAGAGCTAGCAGCG+TGG | 0.719415 | 8_4:+226981 | Msa1305890:CDS |
| TCAGAGTGTGATAGTGCATG+CGG | 0.730430 | 8_4:-224663 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATACTAAAAATAGAAAT+GGG | - | chr8_4:224857-224876 | None:intergenic | 10.0% |
| !! | AAAAATACTAAAAATAGAAA+TGG | - | chr8_4:224858-224877 | None:intergenic | 10.0% |
| !!! | ATTAATAAATTTAAAATTGC+AGG | + | chr8_4:229328-229347 | Msa1305890:intron | 10.0% |
| !!! | TTAATAAATTTAAAATTGCA+GGG | + | chr8_4:229329-229348 | Msa1305890:intron | 10.0% |
| !! | AATTACAGAATATATATAAA+TGG | - | chr8_4:229549-229568 | None:intergenic | 10.0% |
| !! | AAATACTAAAAATAGAAATG+GGG | - | chr8_4:224856-224875 | None:intergenic | 15.0% |
| !! | AAGTTCTCTAATAAAAATAT+CGG | - | chr8_4:225839-225858 | None:intergenic | 15.0% |
| !!! | TTTTTATTAGAGAACTTATA+AGG | + | chr8_4:225842-225861 | Msa1305890:intron | 15.0% |
| !!! | AAAATTCTTTTATATAATCG+GGG | - | chr8_4:225873-225892 | None:intergenic | 15.0% |
| !!! | CAAAATTCTTTTATATAATC+GGG | - | chr8_4:225874-225893 | None:intergenic | 15.0% |
| !!! | GCAAAATTCTTTTATATAAT+CGG | - | chr8_4:225875-225894 | None:intergenic | 15.0% |
| !! | ATTTAATGTAAAGAAATAAG+AGG | - | chr8_4:225922-225941 | None:intergenic | 15.0% |
| !! | ATATTAGATAATATACACAT+TGG | - | chr8_4:226212-226231 | None:intergenic | 15.0% |
| !! | GATAAAAACTTAAATATGAT+TGG | - | chr8_4:226639-226658 | None:intergenic | 15.0% |
| !! | ATAACTAAAATGAAACAAAA+AGG | - | chr8_4:226707-226726 | None:intergenic | 15.0% |
| !!! | ATTTAAGATTCTTTTTGATA+GGG | + | chr8_4:226909-226928 | Msa1305890:intron | 15.0% |
| !! | ATTCTTTATGATGTTTATTT+AGG | + | chr8_4:226943-226962 | Msa1305890:intron | 15.0% |
| !! | TTCTTTATGATGTTTATTTA+GGG | + | chr8_4:226944-226963 | Msa1305890:intron | 15.0% |
| !! | AGTTTACTTAATTAATAGTA+GGG | + | chr8_4:228721-228740 | Msa1305890:intron | 15.0% |
| !!! | TAAAAGTTGAAGATTTTTAT+CGG | + | chr8_4:228778-228797 | Msa1305890:intron | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | - | chr8_4:228947-228966 | None:intergenic | 15.0% |
| !!! | TAATAAATTTAAAATTGCAG+GGG | + | chr8_4:229330-229349 | Msa1305890:intron | 15.0% |
| !!! | ATTTTTATTTACATTGTTCT+AGG | + | chr8_4:230382-230401 | Msa1305890:intron | 15.0% |
| !!! | TTTCAAGTTAGAATCAATTA+CGG | + | chr8_4:225260-225279 | Msa1305890:intron | 20.0% |
| !! | TGCTTTCTTAAAAAAAATTG+AGG | + | chr8_4:225716-225735 | Msa1305890:intron | 20.0% |
| !! | GCTTTCTTAAAAAAAATTGA+GGG | + | chr8_4:225717-225736 | Msa1305890:intron | 20.0% |
| !!! | GAATGTATTTTGACATTATT+AGG | + | chr8_4:225795-225814 | Msa1305890:intron | 20.0% |
| !! | AATAATAGCAGTATTATTCT+CGG | + | chr8_4:225996-226015 | Msa1305890:intron | 20.0% |
| !! | ATTTAAATACTGCATCTATA+AGG | - | chr8_4:226259-226278 | None:intergenic | 20.0% |
| !!! | TGTTTCATTAAGTTTTCAAA+GGG | + | chr8_4:226387-226406 | Msa1305890:intron | 20.0% |
| !!! | TTTTTATCCAAAGTACAAAT+TGG | + | chr8_4:226651-226670 | Msa1305890:intron | 20.0% |
| !!! | CATTTAAGATTCTTTTTGAT+AGG | + | chr8_4:226908-226927 | Msa1305890:intron | 20.0% |
| !!! | TTTAAGATTCTTTTTGATAG+GGG | + | chr8_4:226910-226929 | Msa1305890:intron | 20.0% |
| !! | TCTTTATGATGTTTATTTAG+GGG | + | chr8_4:226945-226964 | Msa1305890:intron | 20.0% |
| !! | TATTTAAACTGTAAACACAT+AGG | + | chr8_4:228171-228190 | Msa1305890:intron | 20.0% |
| !! | ATTTAAACTGTAAACACATA+GGG | + | chr8_4:228172-228191 | Msa1305890:intron | 20.0% |
| !! | TAACAAAAGAATTAGTAAGT+CGG | - | chr8_4:228404-228423 | None:intergenic | 20.0% |
| !! | GAGTTTACTTAATTAATAGT+AGG | + | chr8_4:228720-228739 | Msa1305890:intron | 20.0% |
| !!! | AAAAGTTGAAGATTTTTATC+GGG | + | chr8_4:228779-228798 | Msa1305890:intron | 20.0% |
| !!! | TTATGGGTTAAATATGTTTT+TGG | - | chr8_4:228836-228855 | None:intergenic | 20.0% |
| !! | TTTAACCCATAAGAAAAAAT+TGG | + | chr8_4:228844-228863 | Msa1305890:intron | 20.0% |
| !!! | ATGATCCAATTTTTTCTTAT+GGG | - | chr8_4:228852-228871 | None:intergenic | 20.0% |
| !! | AAATGGATAATATTACAACT+TGG | - | chr8_4:229532-229551 | None:intergenic | 20.0% |
| !! | TATTCTGTAATTTAAACCTA+AGG | + | chr8_4:229557-229576 | Msa1305890:intron | 20.0% |
| !! | ATTCTGTAATTTAAACCTAA+GGG | + | chr8_4:229558-229577 | Msa1305890:intron | 20.0% |
| !! | GAAATTCAAAATGAAAAGTA+GGG | - | chr8_4:230172-230191 | None:intergenic | 20.0% |
| !! | AGAAATTCAAAATGAAAAGT+AGG | - | chr8_4:230173-230192 | None:intergenic | 20.0% |
| !!! | AATTTCTTATGTAATTTGTG+CGG | + | chr8_4:230186-230205 | Msa1305890:intron | 20.0% |
| !! | AAGAATACCAATAATATTGA+TGG | - | chr8_4:230260-230279 | None:intergenic | 20.0% |
| !! | TTACAGATATTCTATTTGAT+TGG | + | chr8_4:230278-230297 | Msa1305890:intron | 20.0% |
| !! | ATATTCTATTTGATTGGATT+TGG | + | chr8_4:230284-230303 | Msa1305890:CDS | 20.0% |
| !! | AGAAATATTGTGTTGAAAAA+TGG | - | chr8_4:230772-230791 | None:intergenic | 20.0% |
| !!! | AATATTTCTATTGCAAAGAA+TGG | + | chr8_4:230783-230802 | Msa1305890:intron | 20.0% |
| !! | AAGATGATTGATTAAAAACT+AGG | + | chr8_4:230808-230827 | Msa1305890:intron | 20.0% |
| !! | AAACTAGGATTTAAATACAA+AGG | + | chr8_4:230823-230842 | Msa1305890:intron | 20.0% |
| !! | TTTGATATGCATATATGTAT+TGG | + | chr8_4:231302-231321 | Msa1305890:intron | 20.0% |
| !!! | GATTTGCTGTTAAAAAAAAA+TGG | - | chr8_4:231371-231390 | None:intergenic | 20.0% |
| !! | TTGATTTAGAATACCGAAAA+TGG | - | chr8_4:224797-224816 | None:intergenic | 25.0% |
| !! | TGTGATTCGTTATTTGATTT+CGG | + | chr8_4:224944-224963 | Msa1305890:intron | 25.0% |
| !! | TTCAAGTTAGAATCAATTAC+GGG | + | chr8_4:225261-225280 | Msa1305890:intron | 25.0% |
| !! | CAAAATCAATTTTATGTGTC+TGG | + | chr8_4:225291-225310 | Msa1305890:intron | 25.0% |
| !!! | TTCTGTTTTGTTTTGATTGT+TGG | + | chr8_4:225370-225389 | Msa1305890:intron | 25.0% |
| !! | TTTGATTGTTGGTAGAAAAT+AGG | + | chr8_4:225381-225400 | Msa1305890:intron | 25.0% |
| ! | TATTAGAGAAACCATTAGAA+AGG | + | chr8_4:225514-225533 | Msa1305890:intron | 25.0% |
| !!! | TTGTTGTTGTTTTGATTGTT+GGG | + | chr8_4:225650-225669 | Msa1305890:intron | 25.0% |
| ! | AATGATTGACACAATAATTC+AGG | + | chr8_4:225689-225708 | Msa1305890:intron | 25.0% |
| ! | ATGATTGACACAATAATTCA+GGG | + | chr8_4:225690-225709 | Msa1305890:intron | 25.0% |
| ! | ATAATACTGCTATTATTGCT+AGG | - | chr8_4:225993-226012 | None:intergenic | 25.0% |
| ! | AGTTGTCTATAATTATCTCT+AGG | + | chr8_4:226063-226082 | Msa1305890:intron | 25.0% |
| ! | ATGCAGTATTTAAATTCCAA+TGG | + | chr8_4:226264-226283 | Msa1305890:intron | 25.0% |
| !! | CTGTTTCATTAAGTTTTCAA+AGG | + | chr8_4:226386-226405 | Msa1305890:intron | 25.0% |
| ! | CACAAATAGTTTCTATTAGA+TGG | - | chr8_4:226470-226489 | None:intergenic | 25.0% |
| !! | TTAGTTCTTAGGAATTAACA+AGG | - | chr8_4:226573-226592 | None:intergenic | 25.0% |
| !! | AGACATTAAAGTTAGTTCTT+AGG | - | chr8_4:226584-226603 | None:intergenic | 25.0% |
| ! | AAAACTACCAATTTGTACTT+TGG | - | chr8_4:226661-226680 | None:intergenic | 25.0% |
| !!! | GTACAAATTGGTAGTTTTTT+TGG | + | chr8_4:226663-226682 | Msa1305890:intron | 25.0% |
| !! | GTTTTTCATTCTGTTTATTG+TGG | + | chr8_4:226734-226753 | Msa1305890:intron | 25.0% |
| ! | CTTTATGATGTTTATTTAGG+GGG | + | chr8_4:226946-226965 | Msa1305890:intron | 25.0% |
| !!! | TTTTGAATTTTTTTAGCTGC+TGG | + | chr8_4:227036-227055 | Msa1305890:intron | 25.0% |
| !! | AATGAAATGAGATGTTTTCT+TGG | + | chr8_4:227689-227708 | Msa1305890:intron | 25.0% |
| ! | GGAATAAAAGATAATTAGAC+AGG | - | chr8_4:227840-227859 | None:intergenic | 25.0% |
| ! | AACATGGTAATATCTTGTAA+TGG | - | chr8_4:228372-228391 | None:intergenic | 25.0% |
| !!! | GATGATCCAATTTTTTCTTA+TGG | - | chr8_4:228853-228872 | None:intergenic | 25.0% |
| !!! | AAGACCAAAATGTTTTGAAA+GGG | - | chr8_4:229192-229211 | None:intergenic | 25.0% |
| !!! | AAAGACCAAAATGTTTTGAA+AGG | - | chr8_4:229193-229212 | None:intergenic | 25.0% |
| ! | TTTCATTTCCATGTAGTTAT+TGG | + | chr8_4:229898-229917 | Msa1305890:intron | 25.0% |
| ! | CATCTCTTCATCTAAATTAA+AGG | - | chr8_4:229977-229996 | None:intergenic | 25.0% |
| !! | ATGAAGAGATGTAAATTTTG+TGG | + | chr8_4:229986-230005 | Msa1305890:intron | 25.0% |
| !! | TGAAGAGATGTAAATTTTGT+GGG | + | chr8_4:229987-230006 | Msa1305890:intron | 25.0% |
| ! | TGTATTAGATCAAAATGATC+TGG | + | chr8_4:230059-230078 | Msa1305890:intron | 25.0% |
| !!! | ATGCATTTTTTTATCGCATT+TGG | + | chr8_4:230111-230130 | Msa1305890:intron | 25.0% |
| ! | CTTTGATCCATCAATATTAT+TGG | + | chr8_4:230250-230269 | Msa1305890:intron | 25.0% |
| ! | CAAAACATCAATAGAAAATG+AGG | - | chr8_4:230460-230479 | None:intergenic | 25.0% |
| ! | TTATAGAACTATAGACAACA+GGG | + | chr8_4:230500-230519 | Msa1305890:intron | 25.0% |
| ! | TAAAAGTAGTAGTTTCGTAA+TGG | + | chr8_4:230699-230718 | Msa1305890:intron | 25.0% |
| ! | TGATTGAAATATTTGTCTGA+TGG | + | chr8_4:230978-230997 | Msa1305890:intron | 25.0% |
| !! | AGAGAATATACATGTTTTTC+CGG | + | chr8_4:231030-231049 | Msa1305890:intron | 25.0% |
| ! | GAGAAAAAAGAGAATATACT+AGG | - | chr8_4:231127-231146 | None:intergenic | 25.0% |
| ! | AACGCAATTTTCTGCTTATT+TGG | - | chr8_4:224636-224655 | None:intergenic | 30.0% |
| ! | AGAAGAAGTCAATCCATTTT+CGG | + | chr8_4:224781-224800 | Msa1305890:CDS | 30.0% |
| ! | TTGAATTTGAGATTGCGAAT+CGG | + | chr8_4:225031-225050 | Msa1305890:intron | 30.0% |
| ! | GAATTTAGTTTCGATGTTTG+TGG | + | chr8_4:225058-225077 | Msa1305890:intron | 30.0% |
| GAAATGTAGGTTTGTGAATT+AGG | + | chr8_4:225097-225116 | Msa1305890:intron | 30.0% | |
| TAGGTTTGTGAATTAGGTTA+TGG | + | chr8_4:225103-225122 | Msa1305890:intron | 30.0% | |
| ! | TACTGTTTGATTTCACAGTA+GGG | - | chr8_4:225333-225352 | None:intergenic | 30.0% |
| AAAATAGGCTTAGATGGTTT+GGG | + | chr8_4:225396-225415 | Msa1305890:intron | 30.0% | |
| ! | GTTTCTCTAATAGTTTTCCT+AGG | - | chr8_4:225506-225525 | None:intergenic | 30.0% |
| !! | AACCATTAGAAAGGTTTTAG+AGG | + | chr8_4:225523-225542 | Msa1305890:intron | 30.0% |
| !! | AACCTCTAAAACCTTTCTAA+TGG | - | chr8_4:225528-225547 | None:intergenic | 30.0% |
| ! | TAATGAGTTGGATCCAAATT+TGG | + | chr8_4:225547-225566 | Msa1305890:intron | 30.0% |
| !!! | GTTGTTGTTGTTTTGATTGT+TGG | + | chr8_4:225649-225668 | Msa1305890:intron | 30.0% |
| ! | AAGAATTTTGCACAACTTTG+AGG | + | chr8_4:225884-225903 | Msa1305890:intron | 30.0% |
| ! | TAAACTCACTGACTAATCAA+AGG | + | chr8_4:225957-225976 | Msa1305890:intron | 30.0% |
| ! | AAACTCACTGACTAATCAAA+GGG | + | chr8_4:225958-225977 | Msa1305890:intron | 30.0% |
| TAATATACACATTGGTCCTA+GGG | - | chr8_4:226204-226223 | None:intergenic | 30.0% | |
| ATAATATACACATTGGTCCT+AGG | - | chr8_4:226205-226224 | None:intergenic | 30.0% | |
| ATTTAAAGATCTTCAGCCAT+TGG | - | chr8_4:226283-226302 | None:intergenic | 30.0% | |
| GTGTGATTGTTTGATATGTT+TGG | + | chr8_4:226358-226377 | Msa1305890:intron | 30.0% | |
| ATTGTGGAATTCTTACAGAA+TGG | + | chr8_4:226750-226769 | Msa1305890:intron | 30.0% | |
| ! | ATTACATTTGAAGTATCCAG+AGG | - | chr8_4:226858-226877 | None:intergenic | 30.0% |
| ! | TGTAATGTCATTTATCATGC+AGG | + | chr8_4:226872-226891 | Msa1305890:intron | 30.0% |
| ! | GTAATGTCATTTATCATGCA+GGG | + | chr8_4:226873-226892 | Msa1305890:intron | 30.0% |
| TGATTTAAAAAGGAGAGAGA+AGG | + | chr8_4:227009-227028 | Msa1305890:CDS | 30.0% | |
| AAGCAAAAACTTGTATATGC+AGG | - | chr8_4:227148-227167 | None:intergenic | 30.0% | |
| ACTCTTTCAAATGCATATGT+AGG | + | chr8_4:227213-227232 | Msa1305890:intron | 30.0% | |
| TGAAAAGACCATTGAAAATC+TGG | - | chr8_4:227295-227314 | None:intergenic | 30.0% | |
| CAATATCATGGTGAATGATT+GGG | - | chr8_4:227424-227443 | None:intergenic | 30.0% | |
| !! | ATTATAGCTATTGGCTCTAA+TGG | + | chr8_4:227654-227673 | Msa1305890:intron | 30.0% |
| ! | AACATCTACTCTAGAAATCT+TGG | + | chr8_4:227775-227794 | Msa1305890:intron | 30.0% |
| CCTGCAAATGATATCAAAAT+AGG | - | chr8_4:227861-227880 | None:intergenic | 30.0% | |
| !!! | CCTATTTTGATATCATTTGC+AGG | + | chr8_4:227858-227877 | Msa1305890:intron | 30.0% |
| AAGTGCTAGTGAATATACAA+AGG | - | chr8_4:228145-228164 | None:intergenic | 30.0% | |
| TCATTTGCCTGTAACTAAAA+GGG | - | chr8_4:228217-228236 | None:intergenic | 30.0% | |
| ATCATTTGCCTGTAACTAAA+AGG | - | chr8_4:228218-228237 | None:intergenic | 30.0% | |
| !! | TTGGTTTTTCATGTTCTACT+TGG | + | chr8_4:228337-228356 | Msa1305890:CDS | 30.0% |
| ! | TTTTGATCTCTTTATCTGCT+TGG | + | chr8_4:228553-228572 | Msa1305890:intron | 30.0% |
| !! | TGTTGATAGGAAATTTTGCA+GGG | + | chr8_4:228753-228772 | Msa1305890:intron | 30.0% |
| CTTATGCTAAAACAAGTAAG+AGG | - | chr8_4:229073-229092 | None:intergenic | 30.0% | |
| TCAGCAATGAAACAATATAG+TGG | + | chr8_4:229093-229112 | Msa1305890:intron | 30.0% | |
| CAGCAATGAAACAATATAGT+GGG | + | chr8_4:229094-229113 | Msa1305890:intron | 30.0% | |
| !!! | AGACCAAAATGTTTTGAAAG+GGG | - | chr8_4:229191-229210 | None:intergenic | 30.0% |
| AAAGAGATAACAGCACAAAA+TGG | - | chr8_4:229234-229253 | None:intergenic | 30.0% | |
| ACGAGCATGACTTAAAAAAA+GGG | - | chr8_4:229261-229280 | None:intergenic | 30.0% | |
| TACGAGCATGACTTAAAAAA+AGG | - | chr8_4:229262-229281 | None:intergenic | 30.0% | |
| ! | GTTTGTTGAATATATTGCAC+TGG | + | chr8_4:229433-229452 | Msa1305890:intron | 30.0% |
| ACATCAGATCATAATTCCAT+AGG | - | chr8_4:229837-229856 | None:intergenic | 30.0% | |
| AGGTTCTACATTCAGTTATT+TGG | - | chr8_4:229957-229976 | None:intergenic | 30.0% | |
| ! | GATGTAAATTTTGTGGGAAT+TGG | + | chr8_4:229993-230012 | Msa1305890:intron | 30.0% |
| ! | AATTTTGTGGGAATTGGATA+TGG | + | chr8_4:229999-230018 | Msa1305890:intron | 30.0% |
| ATTCAAAATGAAAAGTAGGG+AGG | - | chr8_4:230169-230188 | None:intergenic | 30.0% | |
| GTTATAGAACTATAGACAAC+AGG | + | chr8_4:230499-230518 | Msa1305890:intron | 30.0% | |
| TGGTTCTTCATAGATACAAA+TGG | + | chr8_4:230625-230644 | Msa1305890:intron | 30.0% | |
| ! | TACAAATGGTTTCTTGCTAT+TGG | + | chr8_4:230639-230658 | Msa1305890:intron | 30.0% |
| !! | ACAAATGGTTTCTTGCTATT+GGG | + | chr8_4:230640-230659 | Msa1305890:intron | 30.0% |
| !!! | AAGGCTTTTTTTTGCTATTG+TGG | + | chr8_4:230842-230861 | Msa1305890:intron | 30.0% |
| GCAGAAGCAACAAAAATAAA+AGG | - | chr8_4:231010-231029 | None:intergenic | 30.0% | |
| ! | GAGAATATACATGTTTTTCC+GGG | + | chr8_4:231031-231050 | Msa1305890:intron | 30.0% |
| ! | AGAATATACATGTTTTTCCG+GGG | + | chr8_4:231032-231051 | Msa1305890:intron | 30.0% |
| !! | TTCTCAAGATTTTGTTGTAG+CGG | + | chr8_4:231070-231089 | Msa1305890:intron | 30.0% |
| GCATATATGTATTGGATTTC+CGG | + | chr8_4:231310-231329 | Msa1305890:intron | 30.0% | |
| !! | TTTTCTGCTTATTTGGAACG+CGG | - | chr8_4:224629-224648 | None:intergenic | 35.0% |
| AGTGATTCTCTCAACACATT+CGG | + | chr8_4:224686-224705 | Msa1305890:five_prime_UTR | 35.0% | |
| ! | GTGTTTTCGCACATTTTCTT+CGG | + | chr8_4:224708-224727 | Msa1305890:five_prime_UTR | 35.0% |
| TCTTCTTCTTCGAAAGGATT+GGG | - | chr8_4:224767-224786 | None:intergenic | 35.0% | |
| TTCTTCTTCTTCGAAAGGAT+TGG | - | chr8_4:224768-224787 | None:intergenic | 35.0% | |
| TTGACTTCTTCTTCTTCGAA+AGG | - | chr8_4:224773-224792 | None:intergenic | 35.0% | |
| TCCAACATTCTCTAGATTTG+CGG | + | chr8_4:224893-224912 | Msa1305890:intron | 35.0% | |
| ! | TTTAGTTTCGATGTTTGTGG+AGG | + | chr8_4:225061-225080 | Msa1305890:intron | 35.0% |
| ! | CTACTGTTTGATTTCACAGT+AGG | - | chr8_4:225334-225353 | None:intergenic | 35.0% |
| TGGTAGAAAATAGGCTTAGA+TGG | + | chr8_4:225390-225409 | Msa1305890:intron | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | + | chr8_4:225395-225414 | Msa1305890:intron | 35.0% | |
| AGTCAAGTTAAAAGTGGTAG+AGG | + | chr8_4:225476-225495 | Msa1305890:intron | 35.0% | |
| !!! | GGTTTTAGAGGTTAATGAGT+TGG | + | chr8_4:225535-225554 | Msa1305890:intron | 35.0% |
| GTCAGTGAGTTTATAGTACA+GGG | - | chr8_4:225950-225969 | None:intergenic | 35.0% | |
| AGTCAGTGAGTTTATAGTAC+AGG | - | chr8_4:225951-225970 | None:intergenic | 35.0% | |
| TACTGCTATTATTGCTAGGT+AGG | - | chr8_4:225989-226008 | None:intergenic | 35.0% | |
| !! | AAACACAGTGTAGAGGTATT+GGG | + | chr8_4:226088-226107 | Msa1305890:intron | 35.0% |
| TATAAGTTTACACCCAGAAG+AGG | - | chr8_4:226162-226181 | None:intergenic | 35.0% | |
| AATATACACATTGGTCCTAG+GGG | - | chr8_4:226203-226222 | None:intergenic | 35.0% | |
| !!! | GGTAGTTTTTTTGGAAACCT+TGG | + | chr8_4:226672-226691 | Msa1305890:intron | 35.0% |
| GAATTCTTACAGAATGGTGT+TGG | + | chr8_4:226756-226775 | Msa1305890:intron | 35.0% | |
| !!! | TAGCTCTTGACCTTTTTTCT+TGG | - | chr8_4:226975-226994 | None:intergenic | 35.0% |
| TTAAAAAGGAGAGAGAAGGT+TGG | + | chr8_4:227013-227032 | Msa1305890:intron | 35.0% | |
| GTCAAAATCCTCAAAAGCAA+AGG | - | chr8_4:227195-227214 | None:intergenic | 35.0% | |
| AGAGAAGATTCTGTTGCTAA+AGG | + | chr8_4:227247-227266 | Msa1305890:CDS | 35.0% | |
| TTCGAAATATGCTTATCAGC+TGG | + | chr8_4:227362-227381 | Msa1305890:intron | 35.0% | |
| AGGCCAATTCTTATCATCAA+CGG | - | chr8_4:227393-227412 | None:intergenic | 35.0% | |
| TGAATGATTGGGAAAAATGG+AGG | - | chr8_4:227413-227432 | None:intergenic | 35.0% | |
| TGGTGAATGATTGGGAAAAA+TGG | - | chr8_4:227416-227435 | None:intergenic | 35.0% | |
| GCAATATCATGGTGAATGAT+TGG | - | chr8_4:227425-227444 | None:intergenic | 35.0% | |
| GAATCTCATTGGCAATATCA+TGG | - | chr8_4:227436-227455 | None:intergenic | 35.0% | |
| ! | ACTTCTTACCAGCATTTTCT+TGG | + | chr8_4:227572-227591 | Msa1305890:intron | 35.0% |
| ! | TTTGCTTTGGTTTAACGACA+TGG | - | chr8_4:227610-227629 | None:intergenic | 35.0% |
| ATGTCGTTAAACCAAAGCAA+AGG | + | chr8_4:227609-227628 | Msa1305890:intron | 35.0% | |
| TGTCGTTAAACCAAAGCAAA+GGG | + | chr8_4:227610-227629 | Msa1305890:intron | 35.0% | |
| TTTCCCGTGATTATAGCTAT+TGG | + | chr8_4:227645-227664 | Msa1305890:intron | 35.0% | |
| AGAGCCAATAGCTATAATCA+CGG | - | chr8_4:227652-227671 | None:intergenic | 35.0% | |
| GAGTAGATGTTTGTGTTTGA+GGG | - | chr8_4:227766-227785 | None:intergenic | 35.0% | |
| AGAGTAGATGTTTGTGTTTG+AGG | - | chr8_4:227767-227786 | None:intergenic | 35.0% | |
| ACAACACGAAACTAGAGAAT+TGG | - | chr8_4:227977-227996 | None:intergenic | 35.0% | |
| ! | AATTCTCTAGTTTCGTGTTG+TGG | + | chr8_4:227976-227995 | Msa1305890:intron | 35.0% |
| ACATTGTAAACTTCACAGTG+AGG | - | chr8_4:228009-228028 | None:intergenic | 35.0% | |
| TACCAAAGCACATATGAAAG+GGG | - | chr8_4:228083-228102 | None:intergenic | 35.0% | |
| GTACCAAAGCACATATGAAA+GGG | - | chr8_4:228084-228103 | None:intergenic | 35.0% | |
| TGTACCAAAGCACATATGAA+AGG | - | chr8_4:228085-228104 | None:intergenic | 35.0% | |
| TTTCATATGTGCTTTGGTAC+AGG | + | chr8_4:228084-228103 | Msa1305890:CDS | 35.0% | |
| TCATAATGCACAATCAGGTT+AGG | - | chr8_4:228260-228279 | None:intergenic | 35.0% | |
| AACCTGATTGTGCATTATGA+TGG | + | chr8_4:228260-228279 | Msa1305890:intron | 35.0% | |
| AACCATCATAATGCACAATC+AGG | - | chr8_4:228265-228284 | None:intergenic | 35.0% | |
| ! | TATGATTGTTTCTCTTCTGC+AGG | + | chr8_4:228291-228310 | Msa1305890:intron | 35.0% |
| TTTCCATGAAAAACAACTGG+AGG | - | chr8_4:228483-228502 | None:intergenic | 35.0% | |
| GACTTTCCATGAAAAACAAC+TGG | - | chr8_4:228486-228505 | None:intergenic | 35.0% | |
| ! | GTGGGACATTTTAAATGACA+TGG | - | chr8_4:228677-228696 | None:intergenic | 35.0% |
| GTAAACTCGTGTTTGACTAA+TGG | - | chr8_4:228708-228727 | None:intergenic | 35.0% | |
| AGGGAACTAAAACTGTTGAT+AGG | + | chr8_4:228740-228759 | Msa1305890:intron | 35.0% | |
| !! | CTGTTGATAGGAAATTTTGC+AGG | + | chr8_4:228752-228771 | Msa1305890:intron | 35.0% |
| AATTCAATGTAACCATGCGT+CGG | + | chr8_4:228970-228989 | Msa1305890:intron | 35.0% | |
| ACATGATATGTATCTGACAC+CGG | + | chr8_4:228999-229018 | Msa1305890:intron | 35.0% | |
| ! | TTTGTCATTCGTTTGAGTTC+AGG | + | chr8_4:229141-229160 | Msa1305890:intron | 35.0% |
| ! | GTTCCCCTTTCAAAACATTT+TGG | + | chr8_4:229185-229204 | Msa1305890:intron | 35.0% |
| GGTCTTTCTCATATTGTAGT+TGG | + | chr8_4:229206-229225 | Msa1305890:intron | 35.0% | |
| AGCATGACTTAAAAAAAGGG+TGG | - | chr8_4:229258-229277 | None:intergenic | 35.0% | |
| AGATCATAATTCCATAGGAG+AGG | - | chr8_4:229832-229851 | None:intergenic | 35.0% | |
| GTTAAGAGCCAATAACTACA+TGG | - | chr8_4:229909-229928 | None:intergenic | 35.0% | |
| GGATATGGAACTAGATTTAG+TGG | + | chr8_4:230014-230033 | Msa1305890:intron | 35.0% | |
| AAAAATGCATCCATGTTCAC+TGG | - | chr8_4:230101-230120 | None:intergenic | 35.0% | |
| AGCATGTAAGCACAGTTAAA+AGG | - | chr8_4:230232-230251 | None:intergenic | 35.0% | |
| AGGGCAAGAGTAAATTAGAA+CGG | + | chr8_4:230537-230556 | Msa1305890:intron | 35.0% | |
| AACACACTTCAGTCTTCAAA+AGG | - | chr8_4:230584-230603 | None:intergenic | 35.0% | |
| TTGTATCTATGAAGAACCAC+TGG | - | chr8_4:230624-230643 | None:intergenic | 35.0% | |
| !! | CAAATGGTTTCTTGCTATTG+GGG | + | chr8_4:230641-230660 | Msa1305890:intron | 35.0% |
| !! | AAATGGTTTCTTGCTATTGG+GGG | + | chr8_4:230642-230661 | Msa1305890:intron | 35.0% |
| !!! | TTTTTTGCTATTGTGGACTC+TGG | + | chr8_4:230849-230868 | Msa1305890:intron | 35.0% |
| !!! | TTTTTGCTATTGTGGACTCT+GGG | + | chr8_4:230850-230869 | Msa1305890:intron | 35.0% |
| AGTGAAAAACACAGAAGTCA+TGG | - | chr8_4:230922-230941 | None:intergenic | 35.0% | |
| ! | GAATATACATGTTTTTCCGG+GGG | + | chr8_4:231033-231052 | Msa1305890:intron | 35.0% |
| TATTGCAAAGAATGGAGAAG+AGG | - | chr8_4:231153-231172 | None:intergenic | 35.0% | |
| CACGAAGATATTGCAAAGAA+TGG | - | chr8_4:231161-231180 | None:intergenic | 35.0% | |
| TTCTTTGCAATATCTTCGTG+TGG | + | chr8_4:231161-231180 | Msa1305890:intron | 35.0% | |
| ! | TTTCTGCTTATTTGGAACGC+GGG | - | chr8_4:224628-224647 | None:intergenic | 40.0% |
| ACCGCAAATCTAGAGAATGT+TGG | - | chr8_4:224897-224916 | None:intergenic | 40.0% | |
| ACTTGGATCTGGAGAAATGT+AGG | + | chr8_4:225084-225103 | Msa1305890:intron | 40.0% | |
| ! | TGTTTGATTTCACAGTAGGG+AGG | - | chr8_4:225330-225349 | None:intergenic | 40.0% |
| CAAACAGTAGCAAAGTAGAG+TGG | + | chr8_4:225344-225363 | Msa1305890:intron | 40.0% | |
| ! | TTGATCGACTCTTCTTACGA+CGG | - | chr8_4:225447-225466 | None:intergenic | 40.0% |
| CGTAAGAAGAGTCGATCAAA+CGG | + | chr8_4:225448-225467 | Msa1305890:intron | 40.0% | |
| GAGGAGAGTCAAGTTAAAAG+TGG | + | chr8_4:225470-225489 | Msa1305890:intron | 40.0% | |
| GCTCTGTCATGAACCAAATT+TGG | - | chr8_4:225563-225582 | None:intergenic | 40.0% | |
| ! | TGGTTCATGACAGAGCATTA+TGG | + | chr8_4:225567-225586 | Msa1305890:intron | 40.0% |
| TGACATTATTAGGCACAGAG+AGG | + | chr8_4:225805-225824 | Msa1305890:intron | 40.0% | |
| TATTAGGCACAGAGAGGTTT+AGG | + | chr8_4:225811-225830 | Msa1305890:intron | 40.0% | |
| ! | AGCAGATGAAGTTTTTCTCG+TGG | + | chr8_4:226037-226056 | Msa1305890:intron | 40.0% |
| ! | CAAACACAGTGTAGAGGTAT+TGG | + | chr8_4:226087-226106 | Msa1305890:intron | 40.0% |
| AAATTGTAGACGCCTCTTCT+GGG | + | chr8_4:226147-226166 | Msa1305890:intron | 40.0% | |
| !! | CAAAAAGGCATCAAATGCCA+AGG | - | chr8_4:226692-226711 | None:intergenic | 40.0% |
| ! | CGTGGGAAGCTGATTTAAAA+AGG | + | chr8_4:226999-227018 | Msa1305890:CDS | 40.0% |
| GCAGGCATTTAAGAGAATAC+AGG | - | chr8_4:227130-227149 | None:intergenic | 40.0% | |
| TTCTGCCACTATTAGTCAAC+TGG | + | chr8_4:227166-227185 | Msa1305890:intron | 40.0% | |
| GGATACCAGTTGACTAATAG+TGG | - | chr8_4:227174-227193 | None:intergenic | 40.0% | |
| !! | ACTGGTATCCTTTGCTTTTG+AGG | + | chr8_4:227184-227203 | Msa1305890:intron | 40.0% |
| CATTGAAAATCTGGCATGGA+GGG | - | chr8_4:227286-227305 | None:intergenic | 40.0% | |
| AGACCATTGAAAATCTGGCA+TGG | - | chr8_4:227290-227309 | None:intergenic | 40.0% | |
| !! | TGCCCGTTGATGATAAGAAT+TGG | + | chr8_4:227387-227406 | Msa1305890:CDS | 40.0% |
| GGCCAATTCTTATCATCAAC+GGG | - | chr8_4:227392-227411 | None:intergenic | 40.0% | |
| AGCATGAACTGGAATCTCAT+TGG | - | chr8_4:227447-227466 | None:intergenic | 40.0% | |
| TGCTCAGAGACTGCAATATT+CGG | + | chr8_4:227463-227482 | Msa1305890:CDS | 40.0% | |
| AATATTCGGCCTTTGCTAGT+TGG | + | chr8_4:227477-227496 | Msa1305890:CDS | 40.0% | |
| GCTACTTACCAAGAAAATGC+TGG | - | chr8_4:227583-227602 | None:intergenic | 40.0% | |
| AAAATGCATGCCCTTTGCTT+TGG | - | chr8_4:227623-227642 | None:intergenic | 40.0% | |
| GAGCCAATAGCTATAATCAC+GGG | - | chr8_4:227651-227670 | None:intergenic | 40.0% | |
| !! | ATAGCTATTGGCTCTAATGG+TGG | + | chr8_4:227657-227676 | Msa1305890:intron | 40.0% |
| !! | TAGCTATTGGCTCTAATGGT+GGG | + | chr8_4:227658-227677 | Msa1305890:intron | 40.0% |
| TGATATAAATGCCTGCCCAA+TGG | - | chr8_4:227726-227745 | None:intergenic | 40.0% | |
| TAGTTGCAGTGATTGTCTGT+TGG | + | chr8_4:227907-227926 | Msa1305890:CDS | 40.0% | |
| CTGTGAAGTTTACAATGTGC+AGG | + | chr8_4:228011-228030 | Msa1305890:intron | 40.0% | |
| TTCCCCTTTCATATGTGCTT+TGG | + | chr8_4:228078-228097 | Msa1305890:CDS | 40.0% | |
| TTACCTCATAGCACGATAGA+GGG | - | chr8_4:228111-228130 | None:intergenic | 40.0% | |
| TTTACCTCATAGCACGATAG+AGG | - | chr8_4:228112-228131 | None:intergenic | 40.0% | |
| ACTGTAAACACATAGGGCTT+AGG | + | chr8_4:228178-228197 | Msa1305890:intron | 40.0% | |
| ATAGGGCTTAGGACTACTTA+GGG | + | chr8_4:228189-228208 | Msa1305890:intron | 40.0% | |
| !! | TAGGGATCCCTTTTAGTTAC+AGG | + | chr8_4:228207-228226 | Msa1305890:intron | 40.0% |
| AATGCACAATCAGGTTAGGA+GGG | - | chr8_4:228256-228275 | None:intergenic | 40.0% | |
| TAATGCACAATCAGGTTAGG+AGG | - | chr8_4:228257-228276 | None:intergenic | 40.0% | |
| ATAGTGCACTGAAGTTCAGT+TGG | + | chr8_4:228318-228337 | Msa1305890:CDS | 40.0% | |
| AAGTCGGTCACTAAGTAACA+TGG | - | chr8_4:228388-228407 | None:intergenic | 40.0% | |
| !! | AGTTCTACAAGCTGTTTTGC+AGG | + | chr8_4:228515-228534 | Msa1305890:intron | 40.0% |
| !! | GTTCTACAAGCTGTTTTGCA+GGG | + | chr8_4:228516-228535 | Msa1305890:intron | 40.0% |
| ! | GTCATTTAAAATGTCCCACG+TGG | + | chr8_4:228678-228697 | Msa1305890:intron | 40.0% |
| TATGAAGCACAGATACTCCT+AGG | - | chr8_4:229036-229055 | None:intergenic | 40.0% | |
| !! | TAGGAGTATCTGTGCTTCAT+AGG | + | chr8_4:229035-229054 | Msa1305890:intron | 40.0% |
| ACACAATCAAACAGACCCTT+AGG | - | chr8_4:229576-229595 | None:intergenic | 40.0% | |
| GGGTCTGTTTGATTGTGTTT+AGG | + | chr8_4:229578-229597 | Msa1305890:intron | 40.0% | |
| ACTAATTGCCTTCGAGACTT+GGG | - | chr8_4:229784-229803 | None:intergenic | 40.0% | |
| AGTGGTGTCTAGCTACTATA+AGG | + | chr8_4:230032-230051 | Msa1305890:intron | 40.0% | |
| !! | TGGATTTGGTCTGTTTTGCT+TGG | + | chr8_4:230298-230317 | Msa1305890:CDS | 40.0% |
| ! | ATTTGGTCTGTTTTGCTTGG+AGG | + | chr8_4:230301-230320 | Msa1305890:CDS | 40.0% |
| TCTAAGCTTGTGGGTAATTC+AGG | + | chr8_4:230328-230347 | Msa1305890:CDS | 40.0% | |
| AACAGTGAATGATTCACCAG+TGG | + | chr8_4:230605-230624 | Msa1305890:intron | 40.0% | |
| !! | AATGGTTTCTTGCTATTGGG+GGG | + | chr8_4:230643-230662 | Msa1305890:intron | 40.0% |
| AGCTCACTTGGTTGAGTTTA+AGG | + | chr8_4:230672-230691 | Msa1305890:intron | 40.0% | |
| GGGAAACTCAAGACTATGTT+TGG | + | chr8_4:230870-230889 | Msa1305890:intron | 40.0% | |
| AAGAAACTTGCAAGTGTAGC+TGG | - | chr8_4:230948-230967 | None:intergenic | 40.0% | |
| CTGTCAAGTACAGACAACTA+TGG | - | chr8_4:231219-231238 | None:intergenic | 40.0% | |
| TATGTATTGGATTTCCGGTG+TGG | + | chr8_4:231315-231334 | Msa1305890:intron | 40.0% | |
| CATCTACACTATATCCACAC+CGG | - | chr8_4:231332-231351 | None:intergenic | 40.0% | |
| ! | CTTATTTGGAACGCGGGATT+TGG | - | chr8_4:224622-224641 | None:intergenic | 45.0% |
| ! | TCAGAGTGTGATAGTGCATG+CGG | - | chr8_4:224666-224685 | None:intergenic | 45.0% |
| ! | TTTGAGATTGCGAATCGGTG+TGG | + | chr8_4:225036-225055 | Msa1305890:intron | 45.0% |
| TTCGATGTTTGTGGAGGACT+TGG | + | chr8_4:225067-225086 | Msa1305890:intron | 45.0% | |
| TTTGTGTTCACGTAACGCAG+TGG | + | chr8_4:225131-225150 | Msa1305890:intron | 45.0% | |
| AAGAAGAGTCGATCAAACGG+AGG | + | chr8_4:225451-225470 | Msa1305890:intron | 45.0% | |
| AAAGTGGTAGAGGAAGACCT+AGG | + | chr8_4:225486-225505 | Msa1305890:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr8_4:225616-225635 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr8_4:225617-225636 | None:intergenic | 45.0% |
| CTAGGACAAACACAGTGTAG+AGG | + | chr8_4:226081-226100 | Msa1305890:intron | 45.0% | |
| !! | AGAGGTATTGGGTATGCTGA+AGG | + | chr8_4:226099-226118 | Msa1305890:intron | 45.0% |
| GAAATTGTAGACGCCTCTTC+TGG | + | chr8_4:226146-226165 | Msa1305890:intron | 45.0% | |
| ATACCTTCTGTGAAACCCCT+AGG | + | chr8_4:226185-226204 | Msa1305890:intron | 45.0% | |
| AAAATCACGTGTTCCACCGT+TGG | + | chr8_4:226782-226801 | Msa1305890:CDS | 45.0% | |
| TAGGGGGACTCCAAGAAAAA+AGG | + | chr8_4:226962-226981 | Msa1305890:intron | 45.0% | |
| CCATTGAAAATCTGGCATGG+AGG | - | chr8_4:227287-227306 | None:intergenic | 45.0% | |
| ! | CCTCCATGCCAGATTTTCAA+TGG | + | chr8_4:227284-227303 | Msa1305890:intron | 45.0% |
| CATACCCAACCAACTAGCAA+AGG | - | chr8_4:227489-227508 | None:intergenic | 45.0% | |
| CTTTGCTAGTTGGTTGGGTA+TGG | + | chr8_4:227487-227506 | Msa1305890:intron | 45.0% | |
| TTGGCAAGACTCGTTCCATT+GGG | + | chr8_4:227708-227727 | Msa1305890:intron | 45.0% | |
| GTGATTGTCTGTTGGATCAG+AGG | + | chr8_4:227915-227934 | Msa1305890:CDS | 45.0% | |
| ATTGTCTGTTGGATCAGAGG+CGG | + | chr8_4:227918-227937 | Msa1305890:CDS | 45.0% | |
| ! | TCTAGTTTCGTGTTGTGGCT+TGG | + | chr8_4:227981-228000 | Msa1305890:intron | 45.0% |
| CTAGTTTCGTGTTGTGGCTT+GGG | + | chr8_4:227982-228001 | Msa1305890:intron | 45.0% | |
| CAGTGATTTATGCGCTGCTT+GGG | + | chr8_4:228054-228073 | Msa1305890:intron | 45.0% | |
| TACCTCATAGCACGATAGAG+GGG | - | chr8_4:228110-228129 | None:intergenic | 45.0% | |
| CATAGGGCTTAGGACTACTT+AGG | + | chr8_4:228188-228207 | Msa1305890:intron | 45.0% | |
| !!! | GCACCTCCAGTTGTTTTTCA+TGG | + | chr8_4:228477-228496 | Msa1305890:CDS | 45.0% |
| TGACTAATGGAAGTCCACGT+GGG | - | chr8_4:228695-228714 | None:intergenic | 45.0% | |
| TTGACTAATGGAAGTCCACG+TGG | - | chr8_4:228696-228715 | None:intergenic | 45.0% | |
| GTTTATGTCTGTGTCGTGTC+TGG | - | chr8_4:228915-228934 | None:intergenic | 45.0% | |
| GCACAGATACTCCTAGGATT+AGG | - | chr8_4:229030-229049 | None:intergenic | 45.0% | |
| ! | GTCATTCGTTTGAGTTCAGG+TGG | + | chr8_4:229144-229163 | Msa1305890:intron | 45.0% |
| ! | ATTCGTTTGAGTTCAGGTGG+TGG | + | chr8_4:229147-229166 | Msa1305890:intron | 45.0% |
| ! | TTCGTTTGAGTTCAGGTGGT+GGG | + | chr8_4:229148-229167 | Msa1305890:intron | 45.0% |
| AGAACACATCAATCGCTGCA+AGG | - | chr8_4:229359-229378 | None:intergenic | 45.0% | |
| TGTGTTCTCAGACCACGTAT+TGG | + | chr8_4:229371-229390 | Msa1305890:CDS | 45.0% | |
| ! | TTCTCAGACCACGTATTGGT+TGG | + | chr8_4:229375-229394 | Msa1305890:CDS | 45.0% |
| !! | TCTCAGACCACGTATTGGTT+GGG | + | chr8_4:229376-229395 | Msa1305890:CDS | 45.0% |
| AACTTACCCCAACCAATACG+TGG | - | chr8_4:229386-229405 | None:intergenic | 45.0% | |
| CTAATTGCCTTCGAGACTTG+GGG | - | chr8_4:229783-229802 | None:intergenic | 45.0% | |
| CACTAATTGCCTTCGAGACT+TGG | - | chr8_4:229785-229804 | None:intergenic | 45.0% | |
| TTCCATAGGAGAGGAGAAAG+AGG | - | chr8_4:229823-229842 | None:intergenic | 45.0% | |
| ! | TGTTCACTGGTTGCACTTGA+GGG | - | chr8_4:230088-230107 | None:intergenic | 45.0% |
| ! | ATGTTCACTGGTTGCACTTG+AGG | - | chr8_4:230089-230108 | None:intergenic | 45.0% |
| TCAAGTGCAACCAGTGAACA+TGG | + | chr8_4:230088-230107 | Msa1305890:intron | 45.0% | |
| CTTGTGGGTAATTCAGGTGA+GGG | + | chr8_4:230334-230353 | Msa1305890:intron | 45.0% | |
| ! | ACAGGGAGTTGCTTTAGATG+AGG | + | chr8_4:230517-230536 | Msa1305890:intron | 45.0% |
| ! | CAGGGAGTTGCTTTAGATGA+GGG | + | chr8_4:230518-230537 | Msa1305890:intron | 45.0% |
| ! | GAACGGCCTTGTAAGAGTTT+AGG | + | chr8_4:230554-230573 | Msa1305890:intron | 45.0% |
| ! | GGAGTGCCTAAACTCTTACA+AGG | - | chr8_4:230563-230582 | None:intergenic | 45.0% |
| !! | TTTCTTGCTATTGGGGGGAT+GGG | + | chr8_4:230648-230667 | Msa1305890:intron | 45.0% |
| GAGAATATACTAGGCCACAC+TGG | - | chr8_4:231118-231137 | None:intergenic | 45.0% | |
| !!! | TATCTATTTATTAATTATTT+TGG | + | chr8_4:227524-227543 | Msa1305890:intron | 5.0% |
| !! | TAAATGTATTAAAAAAAATT+GGG | - | chr8_4:228622-228641 | None:intergenic | 5.0% |
| !! | TTAAATGTATTAAAAAAAAT+TGG | - | chr8_4:228623-228642 | None:intergenic | 5.0% |
| !!! | AATGAATTTTTAAATTTTAT+AGG | + | chr8_4:228808-228827 | Msa1305890:intron | 5.0% |
| !!! | ATGAATTTTTAAATTTTATA+GGG | + | chr8_4:228809-228828 | Msa1305890:intron | 5.0% |
| CTTCGAAAGGATTGGGATCG+TGG | - | chr8_4:224760-224779 | None:intergenic | 50.0% | |
| GTTTGTGGAGGACTTGGATC+TGG | + | chr8_4:225073-225092 | Msa1305890:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr8_4:225612-225631 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr8_4:225618-225637 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr8_4:225615-225634 | Msa1305890:intron | 50.0% | |
| TTGACCAAAGCCAGCTGGTT+CGG | - | chr8_4:226811-226830 | None:intergenic | 50.0% | |
| TGTCTTTGACCAAAGCCAGC+TGG | - | chr8_4:226816-226835 | None:intergenic | 50.0% | |
| TGCGACAGTTGACATTCCTC+TGG | + | chr8_4:226839-226858 | Msa1305890:CDS | 50.0% | |
| TGCAGTCTCTGAGCATGAAC+TGG | - | chr8_4:227458-227477 | None:intergenic | 50.0% | |
| TTCGGCCTTTGCTAGTTGGT+TGG | + | chr8_4:227481-227500 | Msa1305890:CDS | 50.0% | |
| TCGGCCTTTGCTAGTTGGTT+GGG | + | chr8_4:227482-227501 | Msa1305890:CDS | 50.0% | |
| !! | GGCTCTAATGGTGGGTGAAA+TGG | + | chr8_4:227666-227685 | Msa1305890:intron | 50.0% |
| CTTGGCAAGACTCGTTCCAT+TGG | + | chr8_4:227707-227726 | Msa1305890:intron | 50.0% | |
| GCAGCGCATAAATCACTGCA+AGG | - | chr8_4:228052-228071 | None:intergenic | 50.0% | |
| GCAGTGATTTATGCGCTGCT+TGG | + | chr8_4:228053-228072 | Msa1305890:intron | 50.0% | |
| ! | ATGTAACCATGCGTCGGTGT+CGG | + | chr8_4:228976-228995 | Msa1305890:intron | 50.0% |
| !! | CTCAGACCACGTATTGGTTG+GGG | + | chr8_4:229377-229396 | Msa1305890:CDS | 50.0% |
| AAACAAGCCCCAAGTCTCGA+AGG | + | chr8_4:229773-229792 | Msa1305890:intron | 50.0% | |
| CACCTCTTTCTCCTCTCCTA+TGG | + | chr8_4:229818-229837 | Msa1305890:intron | 50.0% | |
| TGGAGGCTCTTCTAAGCTTG+TGG | + | chr8_4:230318-230337 | Msa1305890:CDS | 50.0% | |
| GGAGGCTCTTCTAAGCTTGT+GGG | + | chr8_4:230319-230338 | Msa1305890:CDS | 50.0% | |
| GCTTGTGGGTAATTCAGGTG+AGG | + | chr8_4:230333-230352 | Msa1305890:intron | 50.0% | |
| !! | GTTTCTTGCTATTGGGGGGA+TGG | + | chr8_4:230647-230666 | Msa1305890:intron | 50.0% |
| AATAGTCTCACTTGTGCCCC+CGG | - | chr8_4:231052-231071 | None:intergenic | 50.0% | |
| GTGTCAGTCACTATCCAGTG+TGG | + | chr8_4:231101-231120 | Msa1305890:intron | 50.0% | |
| GGGATCGTGGTTGCGATTCA+TGG | - | chr8_4:224747-224766 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr8_4:225604-225623 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr8_4:225603-225622 | Msa1305890:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr8_4:225604-225623 | Msa1305890:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr8_4:225610-225629 | Msa1305890:intron | 55.0% | |
| GGTCCTAGGGGTTTCACAGA+AGG | - | chr8_4:226191-226210 | None:intergenic | 55.0% | |
| AAGGTCAAGAGCTAGCAGCG+TGG | + | chr8_4:226981-227000 | Msa1305890:CDS | 55.0% | |
| AGGTCAAGAGCTAGCAGCGT+GGG | + | chr8_4:226982-227001 | Msa1305890:CDS | 55.0% | |
| CAAGACTCGTTCCATTGGGC+AGG | + | chr8_4:227712-227731 | Msa1305890:intron | 55.0% | |
| CTCCTAGGATTAGGCGTGTC+CGG | - | chr8_4:229021-229040 | None:intergenic | 55.0% | |
| !! | CCAGCTGGTTCGGATGCCAA+CGG | - | chr8_4:226801-226820 | None:intergenic | 60.0% |
| ! | GCATCCGAACCAGCTGGCTT+TGG | + | chr8_4:226804-226823 | Msa1305890:CDS | 60.0% |
| GTCTGTTGGATCAGAGGCGG+CGG | + | chr8_4:227921-227940 | Msa1305890:CDS | 60.0% | |
| GGCCCCTCTATCGTGCTATG+AGG | + | chr8_4:228105-228124 | Msa1305890:CDS | 60.0% | |
| TCATGTCCGACACCGACGCA+TGG | - | chr8_4:228985-229004 | None:intergenic | 60.0% | |
| CACCGGACACGCCTAATCCT+AGG | + | chr8_4:229016-229035 | Msa1305890:intron | 60.0% | |
| !! | GCTGGTTCGGATGCCAACGG+TGG | - | chr8_4:226798-226817 | None:intergenic | 65.0% |
| CCGTTGGCATCCGAACCAGC+TGG | + | chr8_4:226798-226817 | Msa1305890:CDS | 65.0% | |
| GGGGGGATGGGTAGCTCACT+TGG | + | chr8_4:230660-230679 | Msa1305890:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 224606 | 231396 | 224606 | ID=Msa1305890;Name=Msa1305890 |
| chr8_4 | mRNA | 224606 | 231396 | 224606 | ID=Msa1305890-mRNA-1;Parent=Msa1305890;Name=Msa1305890-mRNA-1;_AED=0.29;_eAED=0.29;_QI=140|0.81|0.83|0.91|0.81|0.91|12|0|252 |
| chr8_4 | exon | 224606 | 224802 | 224606 | ID=Msa1305890-mRNA-1:exon:4;Parent=Msa1305890-mRNA-1 |
| chr8_4 | exon | 226768 | 226872 | 226768 | ID=Msa1305890-mRNA-1:exon:5;Parent=Msa1305890-mRNA-1 |
| chr8_4 | exon | 226965 | 227030 | 226965 | ID=Msa1305890-mRNA-1:exon:6;Parent=Msa1305890-mRNA-1 |
| chr8_4 | exon | 227235 | 227268 | 227235 | ID=Msa1305890-mRNA-1:exon:7;Parent=Msa1305890-mRNA-1 |
| chr8_4 | exon | 227381 | 227503 | 227381 | ID=Msa1305890-mRNA-1:exon:8;Parent=Msa1305890-mRNA-1 |
| chr8_4 | exon | 227880 | 227942 | 227880 | ID=Msa1305890-mRNA-1:exon:9;Parent=Msa1305890-mRNA-1 |
| chr8_4 | exon | 228057 | 228126 | 228057 | ID=Msa1305890-mRNA-1:exon:10;Parent=Msa1305890-mRNA-1 |
| chr8_4 | exon | 228313 | 228358 | 228313 | ID=Msa1305890-mRNA-1:exon:11;Parent=Msa1305890-mRNA-1 |
| chr8_4 | exon | 228444 | 228511 | 228444 | ID=Msa1305890-mRNA-1:exon:12;Parent=Msa1305890-mRNA-1 |
| chr8_4 | exon | 229350 | 229398 | 229350 | ID=Msa1305890-mRNA-1:exon:13;Parent=Msa1305890-mRNA-1 |
| chr8_4 | exon | 230284 | 230349 | 230284 | ID=Msa1305890-mRNA-1:exon:14;Parent=Msa1305890-mRNA-1 |
| chr8_4 | exon | 231385 | 231396 | 231385 | ID=Msa1305890-mRNA-1:exon:15;Parent=Msa1305890-mRNA-1 |
| chr8_4 | five_prime_UTR | 224606 | 224745 | 224606 | ID=Msa1305890-mRNA-1:five_prime_utr;Parent=Msa1305890-mRNA-1 |
| chr8_4 | CDS | 224746 | 224802 | 224746 | ID=Msa1305890-mRNA-1:cds;Parent=Msa1305890-mRNA-1 |
| chr8_4 | CDS | 226768 | 226872 | 226768 | ID=Msa1305890-mRNA-1:cds;Parent=Msa1305890-mRNA-1 |
| chr8_4 | CDS | 226965 | 227030 | 226965 | ID=Msa1305890-mRNA-1:cds;Parent=Msa1305890-mRNA-1 |
| chr8_4 | CDS | 227235 | 227268 | 227235 | ID=Msa1305890-mRNA-1:cds;Parent=Msa1305890-mRNA-1 |
| chr8_4 | CDS | 227381 | 227503 | 227381 | ID=Msa1305890-mRNA-1:cds;Parent=Msa1305890-mRNA-1 |
| chr8_4 | CDS | 227880 | 227942 | 227880 | ID=Msa1305890-mRNA-1:cds;Parent=Msa1305890-mRNA-1 |
| chr8_4 | CDS | 228057 | 228126 | 228057 | ID=Msa1305890-mRNA-1:cds;Parent=Msa1305890-mRNA-1 |
| chr8_4 | CDS | 228313 | 228358 | 228313 | ID=Msa1305890-mRNA-1:cds;Parent=Msa1305890-mRNA-1 |
| chr8_4 | CDS | 228444 | 228511 | 228444 | ID=Msa1305890-mRNA-1:cds;Parent=Msa1305890-mRNA-1 |
| chr8_4 | CDS | 229350 | 229398 | 229350 | ID=Msa1305890-mRNA-1:cds;Parent=Msa1305890-mRNA-1 |
| chr8_4 | CDS | 230284 | 230349 | 230284 | ID=Msa1305890-mRNA-1:cds;Parent=Msa1305890-mRNA-1 |
| chr8_4 | CDS | 231385 | 231396 | 231385 | ID=Msa1305890-mRNA-1:cds;Parent=Msa1305890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
