AlfalfaGEDB | Msa1308040

M. sativa cultivar zhongmu-4 / Msa1308040

KEGG: -
GO: GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141
PFAM: PF03106.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308040	XP_003626678.1	71.782	202	44	6	3	204	89	277	8.53e-82	254

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308040	sp\|K4BIZ9\|WRK70_SOLLC	63.158	76	26	2	3	77	103	177	5.72e-23	96.3

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308040	G7LAR2	71.782	202	44	6	3	204	89	277	4.08e-82	254

TFs/TRs:

Gene ID	Type	Classification
Msa1308040	TF	WRKY

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1227810	Msa1308040	0.823734	1.180623e-53	-8.615850e-47
Msa1270920	Msa1308040	0.839386	1.634162e-57	-8.615850e-47
Msa1188270	Msa1308040	0.819149	1.351706e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308040	MtrunA17_Chr8g0334541	71.782	202	44	6	3	204	89	277	7.85e-86	254
Msa1308040	MtrunA17_Chr8g0350621	59.868	152	56	3	3	154	97	243	1.06e-50	164
Msa1308040	MtrunA17_Chr7g0244971	49.010	202	67	8	3	190	109	288	2.39e-49	162
Msa1308040	MtrunA17_Chr7g0244981	48.718	195	68	8	3	190	108	277	3.63e-49	161
Msa1308040	MtrunA17_Chr8g0350631	48.837	172	58	7	38	205	5	150	1.19e-37	127
Msa1308040	MtrunA17_Chr2g0315371	56.566	99	43	0	7	105	131	229	4.56e-32	117
Msa1308040	MtrunA17_Chr2g0315381	50.427	117	53	1	7	118	134	250	1.70e-30	114
Msa1308040	MtrunA17_Chr2g0315361	53.509	114	49	3	7	118	138	249	3.70e-30	112
Msa1308040	MtrunA17_Chr7g0275531	59.420	69	28	0	11	79	112	180	1.62e-21	90.1
Msa1308040	MtrunA17_Chr3g0126391	53.521	71	33	0	13	83	129	199	6.35e-21	88.6
Msa1308040	MtrunA17_Chr8g0387981	53.521	71	33	0	13	83	128	198	1.30e-19	85.5
Msa1308040	MtrunA17_Chr5g0428351	48.276	87	38	2	4	84	171	256	1.64e-19	84.3
Msa1308040	MtrunA17_Chr3g0128671	41.964	112	61	1	18	125	128	239	1.70e-19	84.3
Msa1308040	MtrunA17_Chr8g0347251	49.315	73	37	0	11	83	130	202	1.48e-18	82.4
Msa1308040	MtrunA17_Chr7g0224801	54.237	59	24	1	17	75	93	148	4.02e-14	67.4
Msa1308040	MtrunA17_Chr8g0383351	43.939	66	34	1	17	82	160	222	6.94e-13	65.1
Msa1308040	MtrunA17_Chr3g0129361	45.455	66	33	1	17	82	144	206	7.09e-13	65.1
Msa1308040	MtrunA17_Chr7g0238921	55.172	58	23	1	17	74	124	178	1.01e-12	65.5
Msa1308040	MtrunA17_Chr4g0051881	51.724	58	25	1	17	74	178	232	1.09e-12	65.9
Msa1308040	MtrunA17_Chr5g0443131	49.153	59	27	1	17	75	157	212	3.78e-12	63.9
Msa1308040	MtrunA17_Chr2g0315401	46.341	82	33	3	45	122	19	93	7.35e-12	60.8
Msa1308040	MtrunA17_Chr5g0418781	48.276	58	27	1	17	74	124	178	1.96e-11	61.6
Msa1308040	MtrunA17_Chr8g0335811	46.269	67	30	2	17	80	154	217	2.17e-11	60.8
Msa1308040	MtrunA17_Chr5g0431811	36.000	100	57	3	13	109	668	763	2.78e-11	62.0
Msa1308040	MtrunA17_Chr4g0068541	32.624	141	74	6	17	141	208	343	6.10e-11	60.8
Msa1308040	MtrunA17_Chr7g0248721	47.945	73	32	3	17	89	141	207	7.52e-11	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308040	AT1G66550.2	46.316	95	42	2	14	108	101	186	2.02e-22	91.7
Msa1308040	AT1G66550.1	46.316	95	42	2	14	108	106	191	2.53e-22	91.3
Msa1308040	AT1G66600.1	36.923	130	73	2	17	146	103	223	4.45e-22	90.5
Msa1308040	AT1G66560.1	46.316	95	40	2	13	104	96	182	1.40e-20	86.7
Msa1308040	AT3G56400.1	53.846	65	30	0	17	81	120	184	2.16e-20	87.0
Msa1308040	AT5G22570.1	45.455	88	45	1	18	102	111	198	7.48e-20	85.5
Msa1308040	AT2G40740.1	44.186	86	48	0	12	97	168	253	1.40e-18	82.0
Msa1308040	AT2G46400.1	47.191	89	40	1	17	105	104	185	1.41e-18	82.0
Msa1308040	AT1G80590.1	57.627	59	25	0	18	76	86	144	1.59e-18	80.9
Msa1308040	AT5G01900.1	57.627	59	25	0	18	76	111	169	1.62e-18	81.3
Msa1308040	AT2G40740.3	44.186	86	48	0	12	97	177	262	1.74e-18	82.0
Msa1308040	AT4G23810.1	50.704	71	35	0	9	79	150	220	2.34e-18	82.0
Msa1308040	AT2G40750.1	40.000	110	62	2	3	112	138	243	1.08e-17	80.1
Msa1308040	AT4G11070.2	50.704	71	35	0	9	79	101	171	1.12e-17	79.3
Msa1308040	AT4G11070.1	50.704	71	35	0	9	79	133	203	1.49e-17	79.7
Msa1308040	AT5G24110.1	48.485	66	34	0	17	82	113	178	8.52e-16	74.7
Msa1308040	AT5G46350.1	43.373	83	41	2	17	96	183	262	6.31e-13	66.6
Msa1308040	AT1G64000.1	46.575	73	34	2	17	89	114	181	7.65e-13	64.7
Msa1308040	AT2G46130.1	44.737	76	37	2	17	92	30	100	1.03e-12	62.4
Msa1308040	AT5G45260.1	45.833	72	36	2	6	74	1194	1265	6.51e-12	64.3
Msa1308040	AT1G69310.4	48.276	58	27	1	17	74	147	201	1.36e-11	62.8
Msa1308040	AT1G69310.2	48.276	58	27	1	17	74	147	201	1.36e-11	62.8
Msa1308040	AT1G69310.1	48.276	58	27	1	17	74	147	201	1.36e-11	62.8
Msa1308040	AT5G49520.1	50.847	59	26	1	17	75	221	276	1.40e-11	63.2
Msa1308040	AT2G44745.1	50.000	58	26	1	17	74	145	199	1.75e-11	61.6
Msa1308040	AT4G39410.1	46.552	58	28	1	17	74	223	277	1.82e-11	62.4
Msa1308040	AT1G29860.1	49.153	59	27	1	17	75	136	191	3.91e-11	61.2
Msa1308040	AT5G41570.1	43.836	73	36	2	17	89	98	165	4.05e-11	59.7
Msa1308040	AT4G18170.1	50.000	58	26	1	17	74	172	226	4.34e-11	61.2
Msa1308040	AT5G13080.1	49.153	59	27	1	17	75	67	122	4.90e-11	58.9
Msa1308040	AT4G26440.1	54.167	48	19	1	14	61	175	219	6.96e-11	61.2
Msa1308040	AT4G23550.1	47.368	57	28	1	18	74	141	195	8.88e-11	60.5

Find 42 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATATACACACCTTGAGTATT+TGG	0.165030	8_4:-4175122	None:intergenic
TGAATCATGTGATGATAAAA+AGG	0.256485	8_4:-4175548	None:intergenic
TTGAATTCTTTGCACTTGTT+TGG	0.303242	8_4:-4175365	None:intergenic
TTTGCACTTGTTTGGTTGCT+AGG	0.328601	8_4:-4175357	None:intergenic
GGGTATGAATGGAGAAAATA+TGG	0.368996	8_4:+4175079	Msa1308040:CDS
CAATCTTGTTTGGTTGGAGT+TGG	0.387905	8_4:-4175523	None:intergenic
ACCTTGAGTATTTGGAATTG+AGG	0.393271	8_4:-4175114	None:intergenic
AATCTTGTTTGGTTGGAGTT+GGG	0.426902	8_4:-4175522	None:intergenic
ATCTACAAAAGCCCTAGAAA+AGG	0.443182	8_4:-4175805	None:intergenic
AAGGGACAATCTTGTTTGGT+TGG	0.445134	8_4:-4175529	None:intergenic
TCAGAATGTCCAACAGATGA+TGG	0.456231	8_4:+4175058	Msa1308040:CDS
GTTGTTAAAGCTAAGCAATA+TGG	0.457680	8_4:-4175494	None:intergenic
TTCAGTACTCGAACATTGTA+AGG	0.480995	8_4:+4175567	Msa1308040:CDS
TTCCTTGAATATTGATTACC+TGG	0.492891	8_4:+4175612	Msa1308040:CDS
GAAATATCTAAAGTGTGCTC+AGG	0.504315	8_4:-4175640	None:intergenic
AGCCAGGTAATCAATATTCA+AGG	0.512148	8_4:-4175614	None:intergenic
TCTACAAAAGCCCTAGAAAA+GGG	0.519570	8_4:-4175804	None:intergenic
ATCAATATTCAAGGAAGGTG+AGG	0.528994	8_4:-4175605	None:intergenic
CATTCATACCCATCATCTGT+TGG	0.541481	8_4:-4175067	None:intergenic
CAACAGATGATGGGTATGAA+TGG	0.546718	8_4:+4175068	Msa1308040:CDS
TAATATGTGGTCTTATATGA+AGG	0.547746	8_4:-4175397	None:intergenic
ATATATGCAGGGACTACTAC+AGG	0.552760	8_4:+4175308	Msa1308040:intron
AAGGATATGATGATGATGTA+TGG	0.557692	8_4:+4175733	Msa1308040:CDS
TCCTCAATTCCAAATACTCA+AGG	0.566315	8_4:+4175113	Msa1308040:CDS
AACTACATCAACATGGGAGA+AGG	0.572317	8_4:+4175033	Msa1308040:CDS
ATTGTGATCATGAGGAGAAG+TGG	0.579266	8_4:-4175464	None:intergenic
AAGTGTGCTCAGGAGAAGCC+AGG	0.580836	8_4:-4175630	None:intergenic
CATCTGAGTTATTGCAAGTG+TGG	0.586195	8_4:-4175426	None:intergenic
CAGAATGTCCAACAGATGAT+GGG	0.586212	8_4:+4175059	Msa1308040:CDS
TTGTGATCATGAGGAGAAGT+GGG	0.590420	8_4:-4175463	None:intergenic
ATTAATAATAAATAAAACAC+AGG	0.602532	8_4:-4175842	None:intergenic
GAGGAAGTATTGTGATCATG+AGG	0.607427	8_4:-4175472	None:intergenic
TCAATATTCAAGGAAGGTGA+GGG	0.611078	8_4:-4175604	None:intergenic
GTTAAAGCTAAGCAATATGG+AGG	0.618068	8_4:-4175491	None:intergenic
AGGTAATCAATATTCAAGGA+AGG	0.627082	8_4:-4175610	None:intergenic
ATTGAGTGCTACTACTGACT+TGG	0.641003	8_4:-4175675	None:intergenic
TGAATCTGATGATGATCACA+AGG	0.649265	8_4:+4175714	Msa1308040:CDS
TATGTGGTCTTATATGAAGG+AGG	0.655421	8_4:-4175394	None:intergenic
AGTGTGGTGGTCGTAATATG+TGG	0.655558	8_4:-4175410	None:intergenic
CTGAGTTATTGCAAGTGTGG+TGG	0.658914	8_4:-4175423	None:intergenic
AGTACTCGAACATTGTAAGG+AGG	0.678069	8_4:+4175570	Msa1308040:CDS
AAGGGTAAAAGAAATCACGA+TGG	0.749869	8_4:-4175786	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	CATATATTAATTTAATTCAT+TGG	-	chr8_4:4175295-4175314	None:intergenic	10.0%
!!	ATTAATAATAAATAAAACAC+AGG	-	chr8_4:4175845-4175864	None:intergenic	10.0%
!!	CATATATTAATTTAATTCAT+TGG	-	chr8_4:4175295-4175314	None:intergenic	10.0%
!!	ATTAATAATAAATAAAACAC+AGG	-	chr8_4:4175845-4175864	None:intergenic	10.0%
!!	CGAAATAATTAATAAATGAT+TGG	-	chr8_4:4175180-4175199	None:intergenic	15.0%
!!	TGAATTAAATTAATATATGC+AGG	+	chr8_4:4175296-4175315	Msa1308040:intron	15.0%
!!	GAATTAAATTAATATATGCA+GGG	+	chr8_4:4175297-4175316	Msa1308040:intron	15.0%
!!!	TTTTTATATATTCTTCTGAA+AGG	+	chr8_4:4175881-4175900	Msa1308040:three_prime_UTR	15.0%
!!!	TTTTTTTGTTTTTTTGTTTG+AGG	+	chr8_4:4175923-4175942	Msa1308040:three_prime_UTR	15.0%
!!!	TTTTTTGTTTTTTTGTTTGA+GGG	+	chr8_4:4175924-4175943	Msa1308040:three_prime_UTR	15.0%
!!	CGAAATAATTAATAAATGAT+TGG	-	chr8_4:4175180-4175199	None:intergenic	15.0%
!!	TGAATTAAATTAATATATGC+AGG	+	chr8_4:4175296-4175315	Msa1308040:intron	15.0%
!!	GAATTAAATTAATATATGCA+GGG	+	chr8_4:4175297-4175316	Msa1308040:intron	15.0%
!!!	TTTTTATATATTCTTCTGAA+AGG	+	chr8_4:4175881-4175900	Msa1308040:three_prime_UTR	15.0%
!!!	TTTTTTTGTTTTTTTGTTTG+AGG	+	chr8_4:4175923-4175942	Msa1308040:three_prime_UTR	15.0%
!!!	TTTTTTGTTTTTTTGTTTGA+GGG	+	chr8_4:4175924-4175943	Msa1308040:three_prime_UTR	15.0%
!!	CAAGAGAAGATATATTTATT+AGG	-	chr8_4:4175246-4175265	None:intergenic	20.0%
!!	TTCATTGGATCATATATATT+AGG	-	chr8_4:4175280-4175299	None:intergenic	20.0%
!!	CAAGAGAAGATATATTTATT+AGG	-	chr8_4:4175246-4175265	None:intergenic	20.0%
!!	TTCATTGGATCATATATATT+AGG	-	chr8_4:4175280-4175299	None:intergenic	20.0%
!!!	TAATATGTGGTCTTATATGA+AGG	-	chr8_4:4175400-4175419	None:intergenic	25.0%
!	GAATCATGTGATGATAAAAA+GGG	-	chr8_4:4175550-4175569	None:intergenic	25.0%
!	TGAATCATGTGATGATAAAA+AGG	-	chr8_4:4175551-4175570	None:intergenic	25.0%
!!	ATTTCTTTTACCCTTTTCTA+GGG	+	chr8_4:4175794-4175813	Msa1308040:CDS	25.0%
!!!	TAATATGTGGTCTTATATGA+AGG	-	chr8_4:4175400-4175419	None:intergenic	25.0%
!	GAATCATGTGATGATAAAAA+GGG	-	chr8_4:4175550-4175569	None:intergenic	25.0%
!	TGAATCATGTGATGATAAAA+AGG	-	chr8_4:4175551-4175570	None:intergenic	25.0%
!!	ATTTCTTTTACCCTTTTCTA+GGG	+	chr8_4:4175794-4175813	Msa1308040:CDS	25.0%
	GAGTTTATGCAAAGAGTTAA+TGG	+	chr8_4:4174980-4174999	Msa1308040:intron	30.0%
	CAGAAAAACTACATCAACAT+GGG	+	chr8_4:4175027-4175046	Msa1308040:intron	30.0%
	ATATACACACCTTGAGTATT+TGG	-	chr8_4:4175125-4175144	None:intergenic	30.0%
	AAACAGATCTATCTATGTAG+AGG	-	chr8_4:4175223-4175242	None:intergenic	30.0%
	TTGAATTCTTTGCACTTGTT+TGG	-	chr8_4:4175368-4175387	None:intergenic	30.0%
	GTTGTTAAAGCTAAGCAATA+TGG	-	chr8_4:4175497-4175516	None:intergenic	30.0%
	TAAAAAGGGACAATCTTGTT+TGG	-	chr8_4:4175536-4175555	None:intergenic	30.0%
	AGGTAATCAATATTCAAGGA+AGG	-	chr8_4:4175613-4175632	None:intergenic	30.0%
!	TTCCTTGAATATTGATTACC+TGG	+	chr8_4:4175612-4175631	Msa1308040:CDS	30.0%
!	AAGGATATGATGATGATGTA+TGG	+	chr8_4:4175733-4175752	Msa1308040:CDS	30.0%
!	GATTTCTTTTACCCTTTTCT+AGG	+	chr8_4:4175793-4175812	Msa1308040:CDS	30.0%
	GAGTTTATGCAAAGAGTTAA+TGG	+	chr8_4:4174980-4174999	Msa1308040:intron	30.0%
	CAGAAAAACTACATCAACAT+GGG	+	chr8_4:4175027-4175046	Msa1308040:intron	30.0%
	ATATACACACCTTGAGTATT+TGG	-	chr8_4:4175125-4175144	None:intergenic	30.0%
	AAACAGATCTATCTATGTAG+AGG	-	chr8_4:4175223-4175242	None:intergenic	30.0%
	TTGAATTCTTTGCACTTGTT+TGG	-	chr8_4:4175368-4175387	None:intergenic	30.0%
	GTTGTTAAAGCTAAGCAATA+TGG	-	chr8_4:4175497-4175516	None:intergenic	30.0%
	TAAAAAGGGACAATCTTGTT+TGG	-	chr8_4:4175536-4175555	None:intergenic	30.0%
	AGGTAATCAATATTCAAGGA+AGG	-	chr8_4:4175613-4175632	None:intergenic	30.0%
!	TTCCTTGAATATTGATTACC+TGG	+	chr8_4:4175612-4175631	Msa1308040:CDS	30.0%
!	AAGGATATGATGATGATGTA+TGG	+	chr8_4:4175733-4175752	Msa1308040:CDS	30.0%
!	GATTTCTTTTACCCTTTTCT+AGG	+	chr8_4:4175793-4175812	Msa1308040:CDS	30.0%
!!!	CTAGGTTGTGGTTTAGTTTT+TGG	+	chr8_4:4174937-4174956	Msa1308040:intron	35.0%
	GCAGAAAAACTACATCAACA+TGG	+	chr8_4:4175026-4175045	Msa1308040:intron	35.0%
	GGGTATGAATGGAGAAAATA+TGG	+	chr8_4:4175079-4175098	Msa1308040:CDS	35.0%
	TCCTCAATTCCAAATACTCA+AGG	+	chr8_4:4175113-4175132	Msa1308040:CDS	35.0%
!	ACCTTGAGTATTTGGAATTG+AGG	-	chr8_4:4175117-4175136	None:intergenic	35.0%
!!	TATGTGGTCTTATATGAAGG+AGG	-	chr8_4:4175397-4175416	None:intergenic	35.0%
	GTTAAAGCTAAGCAATATGG+AGG	-	chr8_4:4175494-4175513	None:intergenic	35.0%
!	AATCTTGTTTGGTTGGAGTT+GGG	-	chr8_4:4175525-4175544	None:intergenic	35.0%
	TTCAGTACTCGAACATTGTA+AGG	+	chr8_4:4175567-4175586	Msa1308040:CDS	35.0%
	TCAATATTCAAGGAAGGTGA+GGG	-	chr8_4:4175607-4175626	None:intergenic	35.0%
	ATCAATATTCAAGGAAGGTG+AGG	-	chr8_4:4175608-4175627	None:intergenic	35.0%
	AGCCAGGTAATCAATATTCA+AGG	-	chr8_4:4175617-4175636	None:intergenic	35.0%
!	GAAATATCTAAAGTGTGCTC+AGG	-	chr8_4:4175643-4175662	None:intergenic	35.0%
!	TGAATCTGATGATGATCACA+AGG	+	chr8_4:4175714-4175733	Msa1308040:CDS	35.0%
	AAGGGTAAAAGAAATCACGA+TGG	-	chr8_4:4175789-4175808	None:intergenic	35.0%
	TCTACAAAAGCCCTAGAAAA+GGG	-	chr8_4:4175807-4175826	None:intergenic	35.0%
	ATCTACAAAAGCCCTAGAAA+AGG	-	chr8_4:4175808-4175827	None:intergenic	35.0%
!!!	CTAGGTTGTGGTTTAGTTTT+TGG	+	chr8_4:4174937-4174956	Msa1308040:intron	35.0%
	GCAGAAAAACTACATCAACA+TGG	+	chr8_4:4175026-4175045	Msa1308040:intron	35.0%
	GGGTATGAATGGAGAAAATA+TGG	+	chr8_4:4175079-4175098	Msa1308040:CDS	35.0%
	TCCTCAATTCCAAATACTCA+AGG	+	chr8_4:4175113-4175132	Msa1308040:CDS	35.0%
!	ACCTTGAGTATTTGGAATTG+AGG	-	chr8_4:4175117-4175136	None:intergenic	35.0%
!!	TATGTGGTCTTATATGAAGG+AGG	-	chr8_4:4175397-4175416	None:intergenic	35.0%
	GTTAAAGCTAAGCAATATGG+AGG	-	chr8_4:4175494-4175513	None:intergenic	35.0%
!	AATCTTGTTTGGTTGGAGTT+GGG	-	chr8_4:4175525-4175544	None:intergenic	35.0%
	TTCAGTACTCGAACATTGTA+AGG	+	chr8_4:4175567-4175586	Msa1308040:CDS	35.0%
	TCAATATTCAAGGAAGGTGA+GGG	-	chr8_4:4175607-4175626	None:intergenic	35.0%
	ATCAATATTCAAGGAAGGTG+AGG	-	chr8_4:4175608-4175627	None:intergenic	35.0%
	AGCCAGGTAATCAATATTCA+AGG	-	chr8_4:4175617-4175636	None:intergenic	35.0%
!	GAAATATCTAAAGTGTGCTC+AGG	-	chr8_4:4175643-4175662	None:intergenic	35.0%
!	TGAATCTGATGATGATCACA+AGG	+	chr8_4:4175714-4175733	Msa1308040:CDS	35.0%
	AAGGGTAAAAGAAATCACGA+TGG	-	chr8_4:4175789-4175808	None:intergenic	35.0%
	TCTACAAAAGCCCTAGAAAA+GGG	-	chr8_4:4175807-4175826	None:intergenic	35.0%
	ATCTACAAAAGCCCTAGAAA+AGG	-	chr8_4:4175808-4175827	None:intergenic	35.0%
	CTTCCTCGTTGAAATGTACT+AGG	+	chr8_4:4174919-4174938	Msa1308040:intron	40.0%
	CAACCTAGTACATTTCAACG+AGG	-	chr8_4:4174925-4174944	None:intergenic	40.0%
	CGTTGAAATGTACTAGGTTG+TGG	+	chr8_4:4174925-4174944	Msa1308040:intron	40.0%
	AACTACATCAACATGGGAGA+AGG	+	chr8_4:4175033-4175052	Msa1308040:CDS	40.0%
	TCAGAATGTCCAACAGATGA+TGG	+	chr8_4:4175058-4175077	Msa1308040:CDS	40.0%
	CAGAATGTCCAACAGATGAT+GGG	+	chr8_4:4175059-4175078	Msa1308040:CDS	40.0%
	CATTCATACCCATCATCTGT+TGG	-	chr8_4:4175070-4175089	None:intergenic	40.0%
!!	CAACAGATGATGGGTATGAA+TGG	+	chr8_4:4175068-4175087	Msa1308040:CDS	40.0%
	ATATATGCAGGGACTACTAC+AGG	+	chr8_4:4175308-4175327	Msa1308040:intron	40.0%
	TTTGCACTTGTTTGGTTGCT+AGG	-	chr8_4:4175360-4175379	None:intergenic	40.0%
	CATCTGAGTTATTGCAAGTG+TGG	-	chr8_4:4175429-4175448	None:intergenic	40.0%
	TTGTGATCATGAGGAGAAGT+GGG	-	chr8_4:4175466-4175485	None:intergenic	40.0%
	ATTGTGATCATGAGGAGAAG+TGG	-	chr8_4:4175467-4175486	None:intergenic	40.0%
!!	GAGGAAGTATTGTGATCATG+AGG	-	chr8_4:4175475-4175494	None:intergenic	40.0%
!	CAATCTTGTTTGGTTGGAGT+TGG	-	chr8_4:4175526-4175545	None:intergenic	40.0%
!	AAGGGACAATCTTGTTTGGT+TGG	-	chr8_4:4175532-4175551	None:intergenic	40.0%
	AGTACTCGAACATTGTAAGG+AGG	+	chr8_4:4175570-4175589	Msa1308040:CDS	40.0%
!	ATTGAGTGCTACTACTGACT+TGG	-	chr8_4:4175678-4175697	None:intergenic	40.0%
	CTTCCTCGTTGAAATGTACT+AGG	+	chr8_4:4174919-4174938	Msa1308040:intron	40.0%
	CAACCTAGTACATTTCAACG+AGG	-	chr8_4:4174925-4174944	None:intergenic	40.0%
	CGTTGAAATGTACTAGGTTG+TGG	+	chr8_4:4174925-4174944	Msa1308040:intron	40.0%
	AACTACATCAACATGGGAGA+AGG	+	chr8_4:4175033-4175052	Msa1308040:CDS	40.0%
	TCAGAATGTCCAACAGATGA+TGG	+	chr8_4:4175058-4175077	Msa1308040:CDS	40.0%
	CAGAATGTCCAACAGATGAT+GGG	+	chr8_4:4175059-4175078	Msa1308040:CDS	40.0%
	CATTCATACCCATCATCTGT+TGG	-	chr8_4:4175070-4175089	None:intergenic	40.0%
!!	CAACAGATGATGGGTATGAA+TGG	+	chr8_4:4175068-4175087	Msa1308040:CDS	40.0%
	ATATATGCAGGGACTACTAC+AGG	+	chr8_4:4175308-4175327	Msa1308040:intron	40.0%
	TTTGCACTTGTTTGGTTGCT+AGG	-	chr8_4:4175360-4175379	None:intergenic	40.0%
	CATCTGAGTTATTGCAAGTG+TGG	-	chr8_4:4175429-4175448	None:intergenic	40.0%
	TTGTGATCATGAGGAGAAGT+GGG	-	chr8_4:4175466-4175485	None:intergenic	40.0%
	ATTGTGATCATGAGGAGAAG+TGG	-	chr8_4:4175467-4175486	None:intergenic	40.0%
!!	GAGGAAGTATTGTGATCATG+AGG	-	chr8_4:4175475-4175494	None:intergenic	40.0%
!	CAATCTTGTTTGGTTGGAGT+TGG	-	chr8_4:4175526-4175545	None:intergenic	40.0%
!	AAGGGACAATCTTGTTTGGT+TGG	-	chr8_4:4175532-4175551	None:intergenic	40.0%
	AGTACTCGAACATTGTAAGG+AGG	+	chr8_4:4175570-4175589	Msa1308040:CDS	40.0%
!	ATTGAGTGCTACTACTGACT+TGG	-	chr8_4:4175678-4175697	None:intergenic	40.0%
	AGTGTGGTGGTCGTAATATG+TGG	-	chr8_4:4175413-4175432	None:intergenic	45.0%
	CTGAGTTATTGCAAGTGTGG+TGG	-	chr8_4:4175426-4175445	None:intergenic	45.0%
	AGTGTGGTGGTCGTAATATG+TGG	-	chr8_4:4175413-4175432	None:intergenic	45.0%
	CTGAGTTATTGCAAGTGTGG+TGG	-	chr8_4:4175426-4175445	None:intergenic	45.0%
	AAGTGTGCTCAGGAGAAGCC+AGG	-	chr8_4:4175633-4175652	None:intergenic	55.0%
	AAGTGTGCTCAGGAGAAGCC+AGG	-	chr8_4:4175633-4175652	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	4174886	4175955	4174886	ID=Msa1308040;Name=Msa1308040
chr8_4	mRNA	4174886	4175955	4174886	ID=Msa1308040-mRNA-1;Parent=Msa1308040;Name=Msa1308040-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0\|0.5\|0.33\|0.66\|1\|1\|3\|130\|205
chr8_4	exon	4174886	4174890	4174886	ID=Msa1308040-mRNA-1:exon:1200;Parent=Msa1308040-mRNA-1
chr8_4	exon	4175030	4175134	4175030	ID=Msa1308040-mRNA-1:exon:1201;Parent=Msa1308040-mRNA-1
chr8_4	exon	4175318	4175955	4175318	ID=Msa1308040-mRNA-1:exon:1202;Parent=Msa1308040-mRNA-1
chr8_4	CDS	4174886	4174890	4174886	ID=Msa1308040-mRNA-1:cds;Parent=Msa1308040-mRNA-1
chr8_4	CDS	4175030	4175134	4175030	ID=Msa1308040-mRNA-1:cds;Parent=Msa1308040-mRNA-1
chr8_4	CDS	4175318	4175825	4175318	ID=Msa1308040-mRNA-1:cds;Parent=Msa1308040-mRNA-1
chr8_4	three_prime_UTR	4175826	4175955	4175826	ID=Msa1308040-mRNA-1:three_prime_utr;Parent=Msa1308040-mRNA-1

Gene Sequence

>Msa1308040

ATGTTAAAAACTACATCAACATGGGAGAAGGTGTCAGAATGTCCAACAGATGATGGGTATGAATGGAGAAAATATGGTCAAAAAACAATCCTCAATTCCAAATACTCAAGGGACTACTACAGGTGTACTCACAAACTTGATCAAAGATGCCTAGCAACCAAACAAGTGCAAAGAATTCAAGAGAAGCCTCCTTCATATAAGACCACATATTACGACCACCACACTTGCAATAACTCAGATGAAATCATATTTGAACCCACTTCTCCTCATGATCACAATACTTCCTCCATATTGCTTAGCTTTAACAACACATTCCCAACTCCAACCAAACAAGATTGTCCCTTTTTATCATCACATGATTCAGTACTCGAACATTGTAAGGAGGAATTAGTAATTCCCTCACCTTCCTTGAATATTGATTACCTGGCTTCTCCTGAGCACACTTTAGATATTTCTATTTCTACAAGCCAAGTCAGTAGTAGCACTCAATCATCATCAACTACACTTGAATCTGATGATGATCACAAGGATATGATGATGATGTATGGCGATCTCTTGTATGATTCTGTTGAGCTTGACCATCGTGATTTCTTTTACCCTTTTCTAGGGCTTTTGTAG

Protein sequence

>Msa1308040

MLKTTSTWEKVSECPTDDGYEWRKYGQKTILNSKYSRDYYRCTHKLDQRCLATKQVQRIQEKPPSYKTTYYDHHTCNNSDEIIFEPTSPHDHNTSSILLSFNNTFPTPTKQDCPFLSSHDSVLEHCKEELVIPSPSLNIDYLASPEHTLDISISTSQVSSSTQSSSTTLESDDDHKDMMMMYGDLLYDSVELDHRDFFYPFLGLL*