AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1227810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1227810 MtrunA17_Chr8g0334541 63.667 300 80 11 18 311 1 277 1.69e-109 319
Msa1227810 MtrunA17_Chr8g0350621 52.756 254 101 8 16 261 1 243 2.26e-69 216
Msa1227810 MtrunA17_Chr7g0244971 43.836 292 125 11 25 297 17 288 5.45e-61 196
Msa1227810 MtrunA17_Chr7g0244981 43.110 283 130 9 25 297 16 277 1.95e-60 194
Msa1227810 MtrunA17_Chr2g0315371 40.553 217 103 4 21 212 14 229 5.33e-44 152
Msa1227810 MtrunA17_Chr8g0350631 47.093 172 61 7 145 312 5 150 2.14e-34 122
Msa1227810 MtrunA17_Chr2g0315381 35.000 240 119 4 21 225 13 250 2.61e-34 127
Msa1227810 MtrunA17_Chr2g0315361 38.075 239 111 9 21 225 14 249 3.85e-33 124
Msa1227810 MtrunA17_Chr5g0428351 39.560 182 91 8 18 191 86 256 4.31e-30 115
Msa1227810 MtrunA17_Chr7g0275531 38.122 181 91 4 19 186 8 180 6.06e-30 115
Msa1227810 MtrunA17_Chr3g0128671 36.036 222 119 6 29 232 23 239 4.92e-27 107
Msa1227810 MtrunA17_Chr3g0126391 31.472 197 98 5 25 190 9 199 1.44e-21 93.2
Msa1227810 MtrunA17_Chr8g0387981 32.461 191 96 6 26 190 15 198 7.65e-20 88.6
Msa1227810 MtrunA17_Chr8g0347251 31.746 189 104 5 26 190 15 202 2.16e-19 87.4
Msa1227810 MtrunA17_Chr8g0350641 46.617 133 55 6 25 144 10 139 3.20e-18 79.7
Msa1227810 MtrunA17_Chr7g0224801 54.237 59 24 1 124 182 93 148 8.57e-14 68.6
Msa1227810 MtrunA17_Chr3g0129361 46.970 66 32 1 124 189 144 206 1.92e-13 68.6
Msa1227810 MtrunA17_Chr8g0383351 45.455 66 33 1 124 189 160 222 2.20e-13 68.6
Msa1227810 MtrunA17_Chr7g0238921 55.172 58 23 1 124 181 124 178 1.49e-12 67.0
Msa1227810 MtrunA17_Chr4g0051881 51.724 58 25 1 124 181 178 232 2.91e-12 66.6
Msa1227810 MtrunA17_Chr8g0335811 47.761 67 29 2 124 187 154 217 9.91e-12 63.5
Msa1227810 MtrunA17_Chr5g0431811 37.500 96 53 3 122 214 670 761 2.13e-11 64.7
Msa1227810 MtrunA17_Chr5g0443131 50.000 58 26 1 124 181 157 211 4.62e-11 62.8
Msa1227810 MtrunA17_Chr7g0248721 47.945 73 32 3 124 196 141 207 5.36e-11 61.2
Msa1227810 MtrunA17_Chr5g0418781 41.111 90 46 4 124 213 124 206 5.72e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1227810 AT1G66550.2 31.429 245 134 9 15 250 2 221 1.56e-25 102
Msa1227810 AT1G66550.1 31.474 251 131 10 15 250 2 226 3.87e-25 101
Msa1227810 AT3G56400.1 33.333 207 96 6 12 197 8 193 3.97e-24 100
Msa1227810 AT1G66560.1 35.638 188 96 6 27 209 13 180 8.81e-24 98.2
Msa1227810 AT1G66600.1 31.658 199 116 4 60 253 40 223 3.94e-23 95.9
Msa1227810 AT5G22570.1 35.849 159 90 4 60 209 43 198 3.41e-22 94.7
Msa1227810 AT5G01900.1 35.503 169 90 5 25 183 10 169 1.05e-21 92.8
Msa1227810 AT1G80590.1 37.580 157 73 4 27 183 13 144 1.88e-21 91.3
Msa1227810 AT4G11070.2 32.418 182 104 3 13 186 1 171 9.96e-21 90.5
Msa1227810 AT2G46400.1 33.824 204 100 8 23 212 3 185 2.51e-20 89.4
Msa1227810 AT4G11070.1 30.049 203 113 3 13 186 1 203 4.04e-20 89.4
Msa1227810 AT2G40750.1 30.638 235 115 7 25 219 17 243 2.40e-19 87.4
Msa1227810 AT5G24110.1 31.868 182 98 7 18 189 13 178 9.96e-19 85.1
Msa1227810 AT2G40740.1 44.186 86 48 0 119 204 168 253 1.56e-18 84.3
Msa1227810 AT2G40740.3 44.186 86 48 0 119 204 177 262 1.88e-18 84.3
Msa1227810 AT4G23810.1 47.727 88 38 2 107 186 133 220 3.47e-18 84.0
Msa1227810 AT1G64000.1 46.575 73 34 2 124 196 114 181 6.42e-13 67.0
Msa1227810 AT2G46130.1 44.737 76 37 2 124 199 30 100 1.17e-12 63.9
Msa1227810 AT5G45260.1 43.590 78 41 2 107 181 1188 1265 1.59e-12 68.6
Msa1227810 AT5G46350.1 43.373 83 41 2 124 203 183 262 1.79e-12 67.4
Msa1227810 AT4G39410.1 48.276 58 27 1 124 181 223 277 3.77e-12 66.2
Msa1227810 AT2G44745.1 51.724 58 25 1 124 181 145 199 4.88e-12 64.7
Msa1227810 AT4G26440.1 45.312 64 31 2 106 168 159 219 1.18e-11 65.9
Msa1227810 AT1G29860.1 50.000 58 26 1 124 181 136 190 1.51e-11 64.3
Msa1227810 AT5G49520.1 50.847 59 26 1 124 182 221 276 2.01e-11 64.7
Msa1227810 AT5G41570.1 43.836 73 36 2 124 196 98 165 3.36e-11 61.6
Msa1227810 AT1G69310.4 48.276 58 27 1 124 181 147 201 4.60e-11 62.8
Msa1227810 AT1G69310.2 48.276 58 27 1 124 181 147 201 4.60e-11 62.8
Msa1227810 AT1G69310.1 48.276 58 27 1 124 181 147 201 4.60e-11 62.8
Msa1227810 AT5G13080.1 49.153 59 27 1 124 182 67 122 6.47e-11 60.1
Msa1227810 AT4G18170.1 50.000 58 26 1 124 181 172 226 6.55e-11 62.8

Find 73 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACACACACCTTGAGTATT+TGG 0.184403 8_2:-3196413 None:intergenic
TCTATCTATCTATCTATAAA+TGG 0.253018 8_2:+3195427 Msa1227810:exon
TGAATCATGTGATGATAAAA+AGG 0.256485 8_2:-3196762 None:intergenic
TTTGCACTTGTTTGGTTGCT+TGG 0.274159 8_2:-3196571 None:intergenic
TTGAATTCTTTGCACTTGTT+TGG 0.303242 8_2:-3196579 None:intergenic
ATATAGTGAATTGAAAATTA+TGG 0.315126 8_2:+3195472 Msa1227810:CDS
GTTCAAAAGGGTGAGGGTAT+TGG 0.366925 8_2:-3195651 None:intergenic
GGGTATGAATGGAGAAAATA+TGG 0.368996 8_2:+3196370 Msa1227810:CDS
CAATCTTGTTTGGTTGGAGT+TGG 0.387905 8_2:-3196737 None:intergenic
ACCTTGAGTATTTGGAATTG+AGG 0.393271 8_2:-3196405 None:intergenic
AATCTTGTTTGGTTGGAGTT+GGG 0.426902 8_2:-3196736 None:intergenic
GAGATCTCCTGAGATTTAGT+TGG 0.441487 8_2:-3195707 None:intergenic
ATCTACAAAAGCCCTAGAAA+AGG 0.443182 8_2:-3197019 None:intergenic
AAGGGACAATCTTGTTTGGT+TGG 0.445134 8_2:-3196743 None:intergenic
TCAGAATGTCCAACAGATGA+TGG 0.456231 8_2:+3196349 Msa1227810:CDS
GTTGTTAAAGCTAAGCAATA+TGG 0.457680 8_2:-3196708 None:intergenic
AGATTTAGTTGGACTAATGA+AGG 0.473744 8_2:-3195696 None:intergenic
CGTGAGTTTGCAAACCAGCT+TGG 0.479698 8_2:+3195536 Msa1227810:CDS
TTCAGTACTCGAACATTGTA+AGG 0.480995 8_2:+3196781 Msa1227810:CDS
TTTGAACAAACATCACAAAA+CGG 0.482778 8_2:+3195667 Msa1227810:CDS
CATTAGTCCAACTAAATCTC+AGG 0.483913 8_2:+3195700 Msa1227810:CDS
TTCCTTGAATATTGATTACC+TGG 0.493626 8_2:+3196826 Msa1227810:CDS
AACCAGGTAATCAATATTCA+AGG 0.496471 8_2:-3196828 None:intergenic
CACACATTTAGCTAGGAAGA+TGG 0.498727 8_2:+3195356 Msa1227810:five_prime_UTR
GAAATATCTAAAGTGTGCTC+AGG 0.504315 8_2:-3196854 None:intergenic
TCTACAAAAGCCCTAGAAAA+GGG 0.519570 8_2:-3197018 None:intergenic
TTTGTGATGTTTGTTCAAAA+GGG 0.523519 8_2:-3195663 None:intergenic
ATCAATATTCAAGGAAGGTG+AGG 0.528994 8_2:-3196819 None:intergenic
GCTAGGAAGATGGGAGGAAA+CGG 0.531101 8_2:+3195366 Msa1227810:five_prime_UTR
CATACTTCCACCACTGGTAG+AGG 0.539107 8_2:+3195734 Msa1227810:CDS
CATTCATACCCATCATCTGT+TGG 0.541481 8_2:-3196358 None:intergenic
TTATTACAAGTTGTCCAAGC+TGG 0.545077 8_2:-3195550 None:intergenic
CAACAGATGATGGGTATGAA+TGG 0.546718 8_2:+3196359 Msa1227810:CDS
GTAGAGGATCTTACAAAAGA+AGG 0.546964 8_2:+3195750 Msa1227810:CDS
TAATATGTGGTCTTATATGA+AGG 0.547746 8_2:-3196611 None:intergenic
TAGAAATGAGGCAATGGAGG+AGG 0.549808 8_2:+3195499 Msa1227810:CDS
AATTATGGATCTTAGAAATG+AGG 0.549930 8_2:+3195487 Msa1227810:CDS
ATATATGCAGGGACTACTAC+AGG 0.552760 8_2:+3196522 Msa1227810:intron
TTTGTAAGATCCTCTACCAG+TGG 0.556118 8_2:-3195744 None:intergenic
AAGGATATGATGATGATGTA+TGG 0.557692 8_2:+3196947 Msa1227810:CDS
GTTGACAAGAACAAGATGTT+GGG 0.558462 8_2:-3195609 None:intergenic
CATCTGAGTTATTGCAAGTG+TGG 0.563470 8_2:-3196640 None:intergenic
TCCTCAATTCCAAATACTCA+AGG 0.566315 8_2:+3196404 Msa1227810:CDS
ACACATTTAGCTAGGAAGAT+GGG 0.568196 8_2:+3195357 Msa1227810:five_prime_UTR
AACTACATCAACATGGGAGA+AGG 0.572317 8_2:+3196324 Msa1227810:CDS
TCACAACATACTTCCACCAC+TGG 0.575996 8_2:+3195728 Msa1227810:CDS
GTAAGATCCTCTACCAGTGG+TGG 0.578848 8_2:-3195741 None:intergenic
ATTGTGATCATGAGGAGAAG+TGG 0.579266 8_2:-3196678 None:intergenic
CAGAATGTCCAACAGATGAT+GGG 0.586212 8_2:+3196350 Msa1227810:CDS
AACTAATCACACATTTAGCT+AGG 0.587849 8_2:+3195349 Msa1227810:five_prime_UTR
CAATAATCATCATCATGAGT+TGG 0.589772 8_2:+3195586 Msa1227810:CDS
TTGTGATCATGAGGAGAAGT+GGG 0.590420 8_2:-3196677 None:intergenic
GGATCTTAGAAATGAGGCAA+TGG 0.593677 8_2:+3195493 Msa1227810:CDS
TGGAGGAGGAGCTAGTGAGA+GGG 0.597611 8_2:+3195513 Msa1227810:CDS
GATGTTTGTTCAAAAGGGTG+AGG 0.598856 8_2:-3195658 None:intergenic
ATTAATAATAAATAAAACAC+AGG 0.602532 8_2:-3197056 None:intergenic
TGTTGACAAGAACAAGATGT+TGG 0.603924 8_2:-3195610 None:intergenic
ATGGAGGAGGAGCTAGTGAG+AGG 0.606187 8_2:+3195512 Msa1227810:CDS
TCTTAGAAATGAGGCAATGG+AGG 0.606927 8_2:+3195496 Msa1227810:CDS
GAGGAAGTATTGTGATCATG+AGG 0.607427 8_2:-3196686 None:intergenic
TCAATATTCAAGGAAGGTGA+GGG 0.611078 8_2:-3196818 None:intergenic
GTTAAAGCTAAGCAATATGG+AGG 0.618068 8_2:-3196705 None:intergenic
AGGTAATCAATATTCAAGGA+AGG 0.620262 8_2:-3196824 None:intergenic
CTGAGTTATTGCAAGTGTGG+CGG 0.632598 8_2:-3196637 None:intergenic
AAGTGTGCTCAGGAGAAACC+AGG 0.635271 8_2:-3196844 None:intergenic
ATTGAGTGCTACTACTGACT+TGG 0.641003 8_2:-3196889 None:intergenic
ATGTTTGTTCAAAAGGGTGA+GGG 0.642130 8_2:-3195657 None:intergenic
TGAATCTGATGATGATCACA+AGG 0.649265 8_2:+3196928 Msa1227810:CDS
TATGTGGTCTTATATGAAGG+AGG 0.655421 8_2:-3196608 None:intergenic
AGTGTGGCGGTCGTAATATG+TGG 0.655558 8_2:-3196624 None:intergenic
AGTACTCGAACATTGTAAGG+AGG 0.678069 8_2:+3196784 Msa1227810:CDS
CATTTAGCTAGGAAGATGGG+AGG 0.687140 8_2:+3195360 Msa1227810:five_prime_UTR
AAGGGTAAAAGAAATCACGA+TGG 0.749869 8_2:-3197000 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATTATATATATAAT+TGG - chr8_2:3196126-3196145 None:intergenic 0.0%
!!! TTATATATATAATATTTTTT+AGG + chr8_2:3196127-3196146 Msa1227810:intron 0.0%
!! AAAAATATTATATATATAAT+TGG - chr8_2:3196126-3196145 None:intergenic 0.0%
!!! TTATATATATAATATTTTTT+AGG + chr8_2:3196127-3196146 Msa1227810:intron 0.0%
!! TATATATTAATTCAATTCAT+TGG - chr8_2:3196507-3196526 None:intergenic 10.0%
!! ATTAATAATAAATAAAACAC+AGG - chr8_2:3197059-3197078 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTGTTTG+AGG + chr8_2:3197140-3197159 Msa1227810:three_prime_UTR 10.0%
!!! TTTTTTTTTTTTTTGTTTGA+GGG + chr8_2:3197141-3197160 Msa1227810:three_prime_UTR 10.0%
!! TATATATTAATTCAATTCAT+TGG - chr8_2:3196507-3196526 None:intergenic 10.0%
!! ATTAATAATAAATAAAACAC+AGG - chr8_2:3197059-3197078 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTGTTTG+AGG + chr8_2:3197140-3197159 Msa1227810:three_prime_UTR 10.0%
!!! TTTTTTTTTTTTTTGTTTGA+GGG + chr8_2:3197141-3197160 Msa1227810:three_prime_UTR 10.0%
!! ATATAGTGAATTGAAAATTA+TGG + chr8_2:3195472-3195491 Msa1227810:CDS 15.0%
!!! TATGTTTTTTTAGATTCATA+TGG + chr8_2:3195996-3196015 Msa1227810:intron 15.0%
!! AATTGAATTAATATATATGC+AGG + chr8_2:3196510-3196529 Msa1227810:intron 15.0%
!! ATTGAATTAATATATATGCA+GGG + chr8_2:3196511-3196530 Msa1227810:intron 15.0%
!!! TTTTTATATATTCTTCTGAA+AGG + chr8_2:3197098-3197117 Msa1227810:three_prime_UTR 15.0%
!! ATATAGTGAATTGAAAATTA+TGG + chr8_2:3195472-3195491 Msa1227810:CDS 15.0%
!!! TATGTTTTTTTAGATTCATA+TGG + chr8_2:3195996-3196015 Msa1227810:intron 15.0%
!! AATTGAATTAATATATATGC+AGG + chr8_2:3196510-3196529 Msa1227810:intron 15.0%
!! ATTGAATTAATATATATGCA+GGG + chr8_2:3196511-3196530 Msa1227810:intron 15.0%
!!! TTTTTATATATTCTTCTGAA+AGG + chr8_2:3197098-3197117 Msa1227810:three_prime_UTR 15.0%
!! TCTATCTATCTATCTATAAA+TGG + chr8_2:3195427-3195446 Msa1227810:exon 20.0%
!! TCTATCTATAAATGGAAAAA+AGG + chr8_2:3195435-3195454 Msa1227810:exon 20.0%
!! AAGAAAAGAATTAGTAAACA+TGG - chr8_2:3195804-3195823 None:intergenic 20.0%
!! TCTATCTATCTATCTATAAA+TGG + chr8_2:3195427-3195446 Msa1227810:exon 20.0%
!! TCTATCTATAAATGGAAAAA+AGG + chr8_2:3195435-3195454 Msa1227810:exon 20.0%
!! AAGAAAAGAATTAGTAAACA+TGG - chr8_2:3195804-3195823 None:intergenic 20.0%
! AATTATGGATCTTAGAAATG+AGG + chr8_2:3195487-3195506 Msa1227810:CDS 25.0%
! TTTGTGATGTTTGTTCAAAA+GGG - chr8_2:3195666-3195685 None:intergenic 25.0%
!! TTTTGTGATGTTTGTTCAAA+AGG - chr8_2:3195667-3195686 None:intergenic 25.0%
! TTTGAACAAACATCACAAAA+CGG + chr8_2:3195667-3195686 Msa1227810:CDS 25.0%
! TTGTCCTTTCATTTGTTTAA+AGG + chr8_2:3195840-3195859 Msa1227810:intron 25.0%
! GATAATAGCTAGTAGTTTAA+AGG + chr8_2:3196035-3196054 Msa1227810:intron 25.0%
! TTATAATCATGTTGTTCGTT+TGG + chr8_2:3196174-3196193 Msa1227810:intron 25.0%
! GTTTATGCAAAAAGAGTTAA+TGG + chr8_2:3196271-3196290 Msa1227810:intron 25.0%
! TCAAGAGAAGATTTATTAGT+AGG - chr8_2:3196483-3196502 None:intergenic 25.0%
!!! TAATATGTGGTCTTATATGA+AGG - chr8_2:3196614-3196633 None:intergenic 25.0%
! GAATCATGTGATGATAAAAA+GGG - chr8_2:3196764-3196783 None:intergenic 25.0%
! TGAATCATGTGATGATAAAA+AGG - chr8_2:3196765-3196784 None:intergenic 25.0%
!! ATTTCTTTTACCCTTTTCTA+GGG + chr8_2:3197008-3197027 Msa1227810:CDS 25.0%
! AATTATGGATCTTAGAAATG+AGG + chr8_2:3195487-3195506 Msa1227810:CDS 25.0%
! TTTGTGATGTTTGTTCAAAA+GGG - chr8_2:3195666-3195685 None:intergenic 25.0%
!! TTTTGTGATGTTTGTTCAAA+AGG - chr8_2:3195667-3195686 None:intergenic 25.0%
! TTTGAACAAACATCACAAAA+CGG + chr8_2:3195667-3195686 Msa1227810:CDS 25.0%
! TTGTCCTTTCATTTGTTTAA+AGG + chr8_2:3195840-3195859 Msa1227810:intron 25.0%
! GATAATAGCTAGTAGTTTAA+AGG + chr8_2:3196035-3196054 Msa1227810:intron 25.0%
! TTATAATCATGTTGTTCGTT+TGG + chr8_2:3196174-3196193 Msa1227810:intron 25.0%
! GTTTATGCAAAAAGAGTTAA+TGG + chr8_2:3196271-3196290 Msa1227810:intron 25.0%
! TCAAGAGAAGATTTATTAGT+AGG - chr8_2:3196483-3196502 None:intergenic 25.0%
!!! TAATATGTGGTCTTATATGA+AGG - chr8_2:3196614-3196633 None:intergenic 25.0%
! GAATCATGTGATGATAAAAA+GGG - chr8_2:3196764-3196783 None:intergenic 25.0%
! TGAATCATGTGATGATAAAA+AGG - chr8_2:3196765-3196784 None:intergenic 25.0%
!! ATTTCTTTTACCCTTTTCTA+GGG + chr8_2:3197008-3197027 Msa1227810:CDS 25.0%
AACTAATCACACATTTAGCT+AGG + chr8_2:3195349-3195368 Msa1227810:five_prime_UTR 30.0%
AATGGAAAAAAGGCTAGAAA+AGG + chr8_2:3195445-3195464 Msa1227810:exon 30.0%
CAATAATCATCATCATGAGT+TGG + chr8_2:3195586-3195605 Msa1227810:CDS 30.0%
AGATTTAGTTGGACTAATGA+AGG - chr8_2:3195699-3195718 None:intergenic 30.0%
ACGTCCTTTAAACAAATGAA+AGG - chr8_2:3195847-3195866 None:intergenic 30.0%
!! GGTTTGAGTTTTAATCAACA+AGG - chr8_2:3196105-3196124 None:intergenic 30.0%
CAGAAAAACTACATCAACAT+GGG + chr8_2:3196318-3196337 Msa1227810:intron 30.0%
TTGAATTCTTTGCACTTGTT+TGG - chr8_2:3196582-3196601 None:intergenic 30.0%
GTTGTTAAAGCTAAGCAATA+TGG - chr8_2:3196711-3196730 None:intergenic 30.0%
TAAAAAGGGACAATCTTGTT+TGG - chr8_2:3196750-3196769 None:intergenic 30.0%
AGGTAATCAATATTCAAGGA+AGG - chr8_2:3196827-3196846 None:intergenic 30.0%
! TTCCTTGAATATTGATTACC+TGG + chr8_2:3196826-3196845 Msa1227810:CDS 30.0%
AACCAGGTAATCAATATTCA+AGG - chr8_2:3196831-3196850 None:intergenic 30.0%
! AAGGATATGATGATGATGTA+TGG + chr8_2:3196947-3196966 Msa1227810:CDS 30.0%
! GATTTCTTTTACCCTTTTCT+AGG + chr8_2:3197007-3197026 Msa1227810:CDS 30.0%
AACTAATCACACATTTAGCT+AGG + chr8_2:3195349-3195368 Msa1227810:five_prime_UTR 30.0%
AATGGAAAAAAGGCTAGAAA+AGG + chr8_2:3195445-3195464 Msa1227810:exon 30.0%
CAATAATCATCATCATGAGT+TGG + chr8_2:3195586-3195605 Msa1227810:CDS 30.0%
AGATTTAGTTGGACTAATGA+AGG - chr8_2:3195699-3195718 None:intergenic 30.0%
ACGTCCTTTAAACAAATGAA+AGG - chr8_2:3195847-3195866 None:intergenic 30.0%
!! GGTTTGAGTTTTAATCAACA+AGG - chr8_2:3196105-3196124 None:intergenic 30.0%
CAGAAAAACTACATCAACAT+GGG + chr8_2:3196318-3196337 Msa1227810:intron 30.0%
TTGAATTCTTTGCACTTGTT+TGG - chr8_2:3196582-3196601 None:intergenic 30.0%
GTTGTTAAAGCTAAGCAATA+TGG - chr8_2:3196711-3196730 None:intergenic 30.0%
TAAAAAGGGACAATCTTGTT+TGG - chr8_2:3196750-3196769 None:intergenic 30.0%
AGGTAATCAATATTCAAGGA+AGG - chr8_2:3196827-3196846 None:intergenic 30.0%
! TTCCTTGAATATTGATTACC+TGG + chr8_2:3196826-3196845 Msa1227810:CDS 30.0%
AACCAGGTAATCAATATTCA+AGG - chr8_2:3196831-3196850 None:intergenic 30.0%
! AAGGATATGATGATGATGTA+TGG + chr8_2:3196947-3196966 Msa1227810:CDS 30.0%
! GATTTCTTTTACCCTTTTCT+AGG + chr8_2:3197007-3197026 Msa1227810:CDS 30.0%
ACACATTTAGCTAGGAAGAT+GGG + chr8_2:3195357-3195376 Msa1227810:five_prime_UTR 35.0%
GAAAAAAGGCTAGAAAAGGA+AGG + chr8_2:3195449-3195468 Msa1227810:CDS 35.0%
TTATTACAAGTTGTCCAAGC+TGG - chr8_2:3195553-3195572 None:intergenic 35.0%
GTTGACAAGAACAAGATGTT+GGG - chr8_2:3195612-3195631 None:intergenic 35.0%
TGTTGACAAGAACAAGATGT+TGG - chr8_2:3195613-3195632 None:intergenic 35.0%
ATGTTTGTTCAAAAGGGTGA+GGG - chr8_2:3195660-3195679 None:intergenic 35.0%
CATTAGTCCAACTAAATCTC+AGG + chr8_2:3195700-3195719 Msa1227810:CDS 35.0%
GTAGAGGATCTTACAAAAGA+AGG + chr8_2:3195750-3195769 Msa1227810:CDS 35.0%
AATGAAAGGACAAAGTGAGA+TGG - chr8_2:3195833-3195852 None:intergenic 35.0%
AAATGTACTAGGTTGTGGTT+TGG + chr8_2:3196226-3196245 Msa1227810:intron 35.0%
GCAGAAAAACTACATCAACA+TGG + chr8_2:3196317-3196336 Msa1227810:intron 35.0%
GGGTATGAATGGAGAAAATA+TGG + chr8_2:3196370-3196389 Msa1227810:CDS 35.0%
TCCTCAATTCCAAATACTCA+AGG + chr8_2:3196404-3196423 Msa1227810:CDS 35.0%
! ACCTTGAGTATTTGGAATTG+AGG - chr8_2:3196408-3196427 None:intergenic 35.0%
ATACACACACCTTGAGTATT+TGG - chr8_2:3196416-3196435 None:intergenic 35.0%
CTATATATGCAGAGGAATTG+AGG - chr8_2:3196444-3196463 None:intergenic 35.0%
CTATCTAGCTATATATGCAG+AGG - chr8_2:3196452-3196471 None:intergenic 35.0%
!! TATGTGGTCTTATATGAAGG+AGG - chr8_2:3196611-3196630 None:intergenic 35.0%
GTTAAAGCTAAGCAATATGG+AGG - chr8_2:3196708-3196727 None:intergenic 35.0%
! AATCTTGTTTGGTTGGAGTT+GGG - chr8_2:3196739-3196758 None:intergenic 35.0%
TTCAGTACTCGAACATTGTA+AGG + chr8_2:3196781-3196800 Msa1227810:CDS 35.0%
TCAATATTCAAGGAAGGTGA+GGG - chr8_2:3196821-3196840 None:intergenic 35.0%
ATCAATATTCAAGGAAGGTG+AGG - chr8_2:3196822-3196841 None:intergenic 35.0%
! GAAATATCTAAAGTGTGCTC+AGG - chr8_2:3196857-3196876 None:intergenic 35.0%
! TGAATCTGATGATGATCACA+AGG + chr8_2:3196928-3196947 Msa1227810:CDS 35.0%
AAGGGTAAAAGAAATCACGA+TGG - chr8_2:3197003-3197022 None:intergenic 35.0%
TCTACAAAAGCCCTAGAAAA+GGG - chr8_2:3197021-3197040 None:intergenic 35.0%
ATCTACAAAAGCCCTAGAAA+AGG - chr8_2:3197022-3197041 None:intergenic 35.0%
ACACATTTAGCTAGGAAGAT+GGG + chr8_2:3195357-3195376 Msa1227810:five_prime_UTR 35.0%
GAAAAAAGGCTAGAAAAGGA+AGG + chr8_2:3195449-3195468 Msa1227810:CDS 35.0%
TTATTACAAGTTGTCCAAGC+TGG - chr8_2:3195553-3195572 None:intergenic 35.0%
GTTGACAAGAACAAGATGTT+GGG - chr8_2:3195612-3195631 None:intergenic 35.0%
TGTTGACAAGAACAAGATGT+TGG - chr8_2:3195613-3195632 None:intergenic 35.0%
ATGTTTGTTCAAAAGGGTGA+GGG - chr8_2:3195660-3195679 None:intergenic 35.0%
CATTAGTCCAACTAAATCTC+AGG + chr8_2:3195700-3195719 Msa1227810:CDS 35.0%
GTAGAGGATCTTACAAAAGA+AGG + chr8_2:3195750-3195769 Msa1227810:CDS 35.0%
AATGAAAGGACAAAGTGAGA+TGG - chr8_2:3195833-3195852 None:intergenic 35.0%
AAATGTACTAGGTTGTGGTT+TGG + chr8_2:3196226-3196245 Msa1227810:intron 35.0%
GCAGAAAAACTACATCAACA+TGG + chr8_2:3196317-3196336 Msa1227810:intron 35.0%
GGGTATGAATGGAGAAAATA+TGG + chr8_2:3196370-3196389 Msa1227810:CDS 35.0%
TCCTCAATTCCAAATACTCA+AGG + chr8_2:3196404-3196423 Msa1227810:CDS 35.0%
! ACCTTGAGTATTTGGAATTG+AGG - chr8_2:3196408-3196427 None:intergenic 35.0%
ATACACACACCTTGAGTATT+TGG - chr8_2:3196416-3196435 None:intergenic 35.0%
CTATATATGCAGAGGAATTG+AGG - chr8_2:3196444-3196463 None:intergenic 35.0%
CTATCTAGCTATATATGCAG+AGG - chr8_2:3196452-3196471 None:intergenic 35.0%
!! TATGTGGTCTTATATGAAGG+AGG - chr8_2:3196611-3196630 None:intergenic 35.0%
GTTAAAGCTAAGCAATATGG+AGG - chr8_2:3196708-3196727 None:intergenic 35.0%
! AATCTTGTTTGGTTGGAGTT+GGG - chr8_2:3196739-3196758 None:intergenic 35.0%
TTCAGTACTCGAACATTGTA+AGG + chr8_2:3196781-3196800 Msa1227810:CDS 35.0%
TCAATATTCAAGGAAGGTGA+GGG - chr8_2:3196821-3196840 None:intergenic 35.0%
ATCAATATTCAAGGAAGGTG+AGG - chr8_2:3196822-3196841 None:intergenic 35.0%
! GAAATATCTAAAGTGTGCTC+AGG - chr8_2:3196857-3196876 None:intergenic 35.0%
! TGAATCTGATGATGATCACA+AGG + chr8_2:3196928-3196947 Msa1227810:CDS 35.0%
AAGGGTAAAAGAAATCACGA+TGG - chr8_2:3197003-3197022 None:intergenic 35.0%
TCTACAAAAGCCCTAGAAAA+GGG - chr8_2:3197021-3197040 None:intergenic 35.0%
ATCTACAAAAGCCCTAGAAA+AGG - chr8_2:3197022-3197041 None:intergenic 35.0%
CACACATTTAGCTAGGAAGA+TGG + chr8_2:3195356-3195375 Msa1227810:five_prime_UTR 40.0%
GGATCTTAGAAATGAGGCAA+TGG + chr8_2:3195493-3195512 Msa1227810:CDS 40.0%
TCTTAGAAATGAGGCAATGG+AGG + chr8_2:3195496-3195515 Msa1227810:CDS 40.0%
GATGTTTGTTCAAAAGGGTG+AGG - chr8_2:3195661-3195680 None:intergenic 40.0%
GAGATCTCCTGAGATTTAGT+TGG - chr8_2:3195710-3195729 None:intergenic 40.0%
TTTGTAAGATCCTCTACCAG+TGG - chr8_2:3195747-3195766 None:intergenic 40.0%
CTTCCTCGTTGAAATGTACT+AGG + chr8_2:3196215-3196234 Msa1227810:intron 40.0%
CAACCTAGTACATTTCAACG+AGG - chr8_2:3196221-3196240 None:intergenic 40.0%
CGTTGAAATGTACTAGGTTG+TGG + chr8_2:3196221-3196240 Msa1227810:intron 40.0%
AACTACATCAACATGGGAGA+AGG + chr8_2:3196324-3196343 Msa1227810:CDS 40.0%
TCAGAATGTCCAACAGATGA+TGG + chr8_2:3196349-3196368 Msa1227810:CDS 40.0%
CAGAATGTCCAACAGATGAT+GGG + chr8_2:3196350-3196369 Msa1227810:CDS 40.0%
CATTCATACCCATCATCTGT+TGG - chr8_2:3196361-3196380 None:intergenic 40.0%
!! CAACAGATGATGGGTATGAA+TGG + chr8_2:3196359-3196378 Msa1227810:CDS 40.0%
ATATATGCAGGGACTACTAC+AGG + chr8_2:3196522-3196541 Msa1227810:intron 40.0%
TTTGCACTTGTTTGGTTGCT+TGG - chr8_2:3196574-3196593 None:intergenic 40.0%
CATCTGAGTTATTGCAAGTG+TGG - chr8_2:3196643-3196662 None:intergenic 40.0%
TTGTGATCATGAGGAGAAGT+GGG - chr8_2:3196680-3196699 None:intergenic 40.0%
ATTGTGATCATGAGGAGAAG+TGG - chr8_2:3196681-3196700 None:intergenic 40.0%
!! GAGGAAGTATTGTGATCATG+AGG - chr8_2:3196689-3196708 None:intergenic 40.0%
! CAATCTTGTTTGGTTGGAGT+TGG - chr8_2:3196740-3196759 None:intergenic 40.0%
! AAGGGACAATCTTGTTTGGT+TGG - chr8_2:3196746-3196765 None:intergenic 40.0%
AGTACTCGAACATTGTAAGG+AGG + chr8_2:3196784-3196803 Msa1227810:CDS 40.0%
! ATTGAGTGCTACTACTGACT+TGG - chr8_2:3196892-3196911 None:intergenic 40.0%
CACACATTTAGCTAGGAAGA+TGG + chr8_2:3195356-3195375 Msa1227810:five_prime_UTR 40.0%
GGATCTTAGAAATGAGGCAA+TGG + chr8_2:3195493-3195512 Msa1227810:CDS 40.0%
TCTTAGAAATGAGGCAATGG+AGG + chr8_2:3195496-3195515 Msa1227810:CDS 40.0%
GATGTTTGTTCAAAAGGGTG+AGG - chr8_2:3195661-3195680 None:intergenic 40.0%
GAGATCTCCTGAGATTTAGT+TGG - chr8_2:3195710-3195729 None:intergenic 40.0%
TTTGTAAGATCCTCTACCAG+TGG - chr8_2:3195747-3195766 None:intergenic 40.0%
CTTCCTCGTTGAAATGTACT+AGG + chr8_2:3196215-3196234 Msa1227810:intron 40.0%
CAACCTAGTACATTTCAACG+AGG - chr8_2:3196221-3196240 None:intergenic 40.0%
CGTTGAAATGTACTAGGTTG+TGG + chr8_2:3196221-3196240 Msa1227810:intron 40.0%
AACTACATCAACATGGGAGA+AGG + chr8_2:3196324-3196343 Msa1227810:CDS 40.0%
TCAGAATGTCCAACAGATGA+TGG + chr8_2:3196349-3196368 Msa1227810:CDS 40.0%
CAGAATGTCCAACAGATGAT+GGG + chr8_2:3196350-3196369 Msa1227810:CDS 40.0%
CATTCATACCCATCATCTGT+TGG - chr8_2:3196361-3196380 None:intergenic 40.0%
!! CAACAGATGATGGGTATGAA+TGG + chr8_2:3196359-3196378 Msa1227810:CDS 40.0%
ATATATGCAGGGACTACTAC+AGG + chr8_2:3196522-3196541 Msa1227810:intron 40.0%
TTTGCACTTGTTTGGTTGCT+TGG - chr8_2:3196574-3196593 None:intergenic 40.0%
CATCTGAGTTATTGCAAGTG+TGG - chr8_2:3196643-3196662 None:intergenic 40.0%
TTGTGATCATGAGGAGAAGT+GGG - chr8_2:3196680-3196699 None:intergenic 40.0%
ATTGTGATCATGAGGAGAAG+TGG - chr8_2:3196681-3196700 None:intergenic 40.0%
!! GAGGAAGTATTGTGATCATG+AGG - chr8_2:3196689-3196708 None:intergenic 40.0%
! CAATCTTGTTTGGTTGGAGT+TGG - chr8_2:3196740-3196759 None:intergenic 40.0%
! AAGGGACAATCTTGTTTGGT+TGG - chr8_2:3196746-3196765 None:intergenic 40.0%
AGTACTCGAACATTGTAAGG+AGG + chr8_2:3196784-3196803 Msa1227810:CDS 40.0%
! ATTGAGTGCTACTACTGACT+TGG - chr8_2:3196892-3196911 None:intergenic 40.0%
CATTTAGCTAGGAAGATGGG+AGG + chr8_2:3195360-3195379 Msa1227810:five_prime_UTR 45.0%
TAGAAATGAGGCAATGGAGG+AGG + chr8_2:3195499-3195518 Msa1227810:CDS 45.0%
! GTTCAAAAGGGTGAGGGTAT+TGG - chr8_2:3195654-3195673 None:intergenic 45.0%
TCACAACATACTTCCACCAC+TGG + chr8_2:3195728-3195747 Msa1227810:CDS 45.0%
CTGAGTTATTGCAAGTGTGG+CGG - chr8_2:3196640-3196659 None:intergenic 45.0%
CATTTAGCTAGGAAGATGGG+AGG + chr8_2:3195360-3195379 Msa1227810:five_prime_UTR 45.0%
TAGAAATGAGGCAATGGAGG+AGG + chr8_2:3195499-3195518 Msa1227810:CDS 45.0%
! GTTCAAAAGGGTGAGGGTAT+TGG - chr8_2:3195654-3195673 None:intergenic 45.0%
TCACAACATACTTCCACCAC+TGG + chr8_2:3195728-3195747 Msa1227810:CDS 45.0%
CTGAGTTATTGCAAGTGTGG+CGG - chr8_2:3196640-3196659 None:intergenic 45.0%
GCTAGGAAGATGGGAGGAAA+CGG + chr8_2:3195366-3195385 Msa1227810:five_prime_UTR 50.0%
CGTGAGTTTGCAAACCAGCT+TGG + chr8_2:3195536-3195555 Msa1227810:CDS 50.0%
CATACTTCCACCACTGGTAG+AGG + chr8_2:3195734-3195753 Msa1227810:CDS 50.0%
GTAAGATCCTCTACCAGTGG+TGG - chr8_2:3195744-3195763 None:intergenic 50.0%
AGTGTGGCGGTCGTAATATG+TGG - chr8_2:3196627-3196646 None:intergenic 50.0%
AAGTGTGCTCAGGAGAAACC+AGG - chr8_2:3196847-3196866 None:intergenic 50.0%
GCTAGGAAGATGGGAGGAAA+CGG + chr8_2:3195366-3195385 Msa1227810:five_prime_UTR 50.0%
CGTGAGTTTGCAAACCAGCT+TGG + chr8_2:3195536-3195555 Msa1227810:CDS 50.0%
CATACTTCCACCACTGGTAG+AGG + chr8_2:3195734-3195753 Msa1227810:CDS 50.0%
GTAAGATCCTCTACCAGTGG+TGG - chr8_2:3195744-3195763 None:intergenic 50.0%
AGTGTGGCGGTCGTAATATG+TGG - chr8_2:3196627-3196646 None:intergenic 50.0%
AAGTGTGCTCAGGAGAAACC+AGG - chr8_2:3196847-3196866 None:intergenic 50.0%
ATGGAGGAGGAGCTAGTGAG+AGG + chr8_2:3195512-3195531 Msa1227810:CDS 55.0%
TGGAGGAGGAGCTAGTGAGA+GGG + chr8_2:3195513-3195532 Msa1227810:CDS 55.0%
ATGGAGGAGGAGCTAGTGAG+AGG + chr8_2:3195512-3195531 Msa1227810:CDS 55.0%
TGGAGGAGGAGCTAGTGAGA+GGG + chr8_2:3195513-3195532 Msa1227810:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 3195339 3197172 3195339 ID=Msa1227810;Name=Msa1227810
chr8_2 mRNA 3195339 3197172 3195339 ID=Msa1227810-mRNA-1;Parent=Msa1227810;Name=Msa1227810-mRNA-1;_AED=0.26;_eAED=0.26;_QI=107|1|1|1|1|1|3|133|312
chr8_2 exon 3195339 3195771 3195339 ID=Msa1227810-mRNA-1:exon:961;Parent=Msa1227810-mRNA-1
chr8_2 exon 3196321 3196425 3196321 ID=Msa1227810-mRNA-1:exon:962;Parent=Msa1227810-mRNA-1
chr8_2 exon 3196532 3197172 3196532 ID=Msa1227810-mRNA-1:exon:963;Parent=Msa1227810-mRNA-1
chr8_2 five_prime_UTR 3195339 3195445 3195339 ID=Msa1227810-mRNA-1:five_prime_utr;Parent=Msa1227810-mRNA-1
chr8_2 CDS 3195446 3195771 3195446 ID=Msa1227810-mRNA-1:cds;Parent=Msa1227810-mRNA-1
chr8_2 CDS 3196321 3196425 3196321 ID=Msa1227810-mRNA-1:cds;Parent=Msa1227810-mRNA-1
chr8_2 CDS 3196532 3197039 3196532 ID=Msa1227810-mRNA-1:cds;Parent=Msa1227810-mRNA-1
chr8_2 three_prime_UTR 3197040 3197172 3197040 ID=Msa1227810-mRNA-1:three_prime_utr;Parent=Msa1227810-mRNA-1
Gene Sequence

>Msa1227810

ATGGAAAAAAGGCTAGAAAAGGAAGGATATAGTGAATTGAAAATTATGGATCTTAGAAATGAGGCAATGGAGGAGGAGCTAGTGAGAGGGCGTGAGTTTGCAAACCAGCTTGGACAACTTGTAATAACATTGATGAAGAACAATAATCATCATCATGAGTTGGCCCAACATCTTGTTCTTGTCAACAACATTATCAACTCATTTACCAATACCCTCACCCTTTTGAACAAACATCACAAAACGGATTCTTCCTTCATTAGTCCAACTAAATCTCAGGAGATCTCACAACATACTTCCACCACTGGTAGAGGATCTTACAAAAGAAGAAAAACTACATCAACATGGGAGAAGGTGTCAGAATGTCCAACAGATGATGGGTATGAATGGAGAAAATATGGTCAAAAAACAATCCTCAATTCCAAATACTCAAGGGACTACTACAGGTGTACTCACAAGCTTGATCAAAGATGCCAAGCAACCAAACAAGTGCAAAGAATTCAAGAGAAGCCTCCTTCATATAAGACCACATATTACGACCGCCACACTTGCAATAACTCAGATGAAATCATATTTGAACCCACTTCTCCTCATGATCACAATACTTCCTCCATATTGCTTAGCTTTAACAACACATTCCCAACTCCAACCAAACAAGATTGTCCCTTTTTATCATCACATGATTCAGTACTCGAACATTGTAAGGAGGAATTAGTAATTCCCTCACCTTCCTTGAATATTGATTACCTGGTTTCTCCTGAGCACACTTTAGATATTTCTATTTCTACAAGCCAAGTCAGTAGTAGCACTCAATCATCATCAACTACACTTGAATCTGATGATGATCACAAGGATATGATGATGATGTATGGCGATCTCTTCTATGATTCTGTTGAGCTTGACCATCGTGATTTCTTTTACCCTTTTCTAGGGCTTTTGTAG

Protein sequence

>Msa1227810

MEKRLEKEGYSELKIMDLRNEAMEEELVRGREFANQLGQLVITLMKNNNHHHELAQHLVLVNNIINSFTNTLTLLNKHHKTDSSFISPTKSQEISQHTSTTGRGSYKRRKTTSTWEKVSECPTDDGYEWRKYGQKTILNSKYSRDYYRCTHKLDQRCQATKQVQRIQEKPPSYKTTYYDRHTCNNSDEIIFEPTSPHDHNTSSILLSFNNTFPTPTKQDCPFLSSHDSVLEHCKEELVIPSPSLNIDYLVSPEHTLDISISTSQVSSSTQSSSTTLESDDDHKDMMMMYGDLFYDSVELDHRDFFYPFLGLL*