AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1188270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1188270 MtrunA17_Chr8g0334541 64.310 297 80 11 3 293 1 277 5.11e-110 320
Msa1188270 MtrunA17_Chr8g0350621 52.174 253 101 8 1 243 1 243 1.79e-68 213
Msa1188270 MtrunA17_Chr7g0244971 48.148 243 98 9 10 231 17 252 8.38e-61 195
Msa1188270 MtrunA17_Chr7g0244981 42.403 283 129 9 10 279 16 277 1.38e-60 194
Msa1188270 MtrunA17_Chr2g0315371 40.826 218 98 5 6 194 14 229 1.07e-43 150
Msa1188270 MtrunA17_Chr8g0350631 47.093 172 61 7 127 294 5 150 1.85e-34 122
Msa1188270 MtrunA17_Chr2g0315381 33.600 250 127 5 6 219 13 259 3.13e-33 124
Msa1188270 MtrunA17_Chr2g0315361 35.714 238 115 7 6 207 14 249 3.46e-32 120
Msa1188270 MtrunA17_Chr7g0275531 38.764 178 91 3 4 168 8 180 1.74e-31 119
Msa1188270 MtrunA17_Chr5g0428351 40.223 179 91 7 3 173 86 256 1.42e-30 117
Msa1188270 MtrunA17_Chr3g0128671 35.616 219 121 6 14 214 23 239 1.21e-26 106
Msa1188270 MtrunA17_Chr3g0126391 31.443 194 99 5 10 172 9 199 1.85e-21 92.4
Msa1188270 MtrunA17_Chr8g0387981 32.447 188 97 5 11 172 15 198 2.13e-20 89.7
Msa1188270 MtrunA17_Chr8g0347251 31.746 189 101 5 11 172 15 202 1.64e-19 87.4
Msa1188270 MtrunA17_Chr8g0350641 45.113 133 54 6 10 126 10 139 1.79e-18 80.1
Msa1188270 MtrunA17_Chr7g0224801 54.237 59 24 1 106 164 93 148 6.14e-14 68.6
Msa1188270 MtrunA17_Chr3g0129361 46.970 66 32 1 106 171 144 206 1.51e-13 68.6
Msa1188270 MtrunA17_Chr8g0383351 45.455 66 33 1 106 171 160 222 1.57e-13 68.6
Msa1188270 MtrunA17_Chr7g0238921 55.172 58 23 1 106 163 124 178 1.25e-12 67.0
Msa1188270 MtrunA17_Chr4g0051881 51.724 58 25 1 106 163 178 232 2.32e-12 66.6
Msa1188270 MtrunA17_Chr8g0335811 47.761 67 29 2 106 169 154 217 7.94e-12 63.9
Msa1188270 MtrunA17_Chr5g0431811 37.500 96 53 3 104 196 670 761 2.07e-11 64.7
Msa1188270 MtrunA17_Chr5g0443131 50.000 58 26 1 106 163 157 211 4.03e-11 62.8
Msa1188270 MtrunA17_Chr7g0248721 47.945 73 32 3 106 178 141 207 5.48e-11 61.2
Msa1188270 MtrunA17_Chr5g0418781 48.276 58 27 1 106 163 124 178 5.69e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1188270 AT1G66550.2 32.500 240 131 9 2 232 4 221 1.66e-26 104
Msa1188270 AT1G66550.1 32.520 246 128 10 2 232 4 226 4.02e-26 103
Msa1188270 AT3G56400.1 34.392 189 95 4 11 179 14 193 1.06e-24 101
Msa1188270 AT1G66560.1 36.757 185 95 6 12 191 13 180 1.29e-24 99.8
Msa1188270 AT1G66600.1 31.658 199 116 4 42 235 40 223 2.03e-23 96.3
Msa1188270 AT5G22570.1 35.849 159 90 4 42 191 43 198 3.22e-22 94.4
Msa1188270 AT1G80590.1 37.662 154 74 3 12 165 13 144 4.22e-22 92.8
Msa1188270 AT5G01900.1 35.465 172 94 6 4 165 5 169 8.35e-22 92.4
Msa1188270 AT4G11070.2 34.091 176 100 4 1 168 4 171 4.85e-20 88.2
Msa1188270 AT2G46400.1 33.333 201 102 8 8 194 3 185 6.02e-20 88.2
Msa1188270 AT4G11070.1 32.000 200 104 5 1 168 4 203 8.13e-20 88.2
Msa1188270 AT2G40750.1 31.064 235 111 8 10 201 17 243 2.06e-19 87.4
Msa1188270 AT5G24110.1 31.844 179 99 6 3 171 13 178 2.07e-19 86.7
Msa1188270 AT2G40740.1 44.186 86 48 0 101 186 168 253 1.79e-18 84.0
Msa1188270 AT2G40740.3 44.186 86 48 0 101 186 177 262 2.40e-18 83.6
Msa1188270 AT4G23810.1 47.727 88 38 2 89 168 133 220 2.72e-18 84.0
Msa1188270 AT1G64000.1 46.575 73 34 2 106 178 114 181 5.76e-13 66.6
Msa1188270 AT2G46130.1 44.737 76 37 2 106 181 30 100 1.07e-12 63.9
Msa1188270 AT5G45260.1 43.590 78 41 2 89 163 1188 1265 1.22e-12 68.9
Msa1188270 AT5G46350.1 43.373 83 41 2 106 185 183 262 1.60e-12 67.4
Msa1188270 AT4G39410.1 36.207 116 54 4 59 163 171 277 2.97e-12 66.2
Msa1188270 AT2G44745.1 51.724 58 25 1 106 163 145 199 3.74e-12 65.1
Msa1188270 AT4G26440.1 45.312 64 31 2 88 150 159 219 8.31e-12 65.9
Msa1188270 AT1G29860.1 50.000 58 26 1 106 163 136 190 1.33e-11 64.3
Msa1188270 AT5G49520.1 50.847 59 26 1 106 164 221 276 1.75e-11 64.7
Msa1188270 AT5G41570.1 43.836 73 36 2 106 178 98 165 3.17e-11 61.6
Msa1188270 AT1G69310.4 48.276 58 27 1 106 163 147 201 3.95e-11 62.8
Msa1188270 AT1G69310.2 48.276 58 27 1 106 163 147 201 3.95e-11 62.8
Msa1188270 AT1G69310.1 48.276 58 27 1 106 163 147 201 3.95e-11 62.8
Msa1188270 AT4G18170.1 50.000 58 26 1 106 163 172 226 5.39e-11 62.8
Msa1188270 AT5G13080.1 49.153 59 27 1 106 164 67 122 6.01e-11 60.1

Find 66 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACACACACCTTGAGTATT+TGG 0.184403 8_1:-28453783 None:intergenic
TGAATCATGTGATGATAAAA+AGG 0.256485 8_1:-28454132 None:intergenic
TTTGCACTTGTTTGGTTGCT+TGG 0.274159 8_1:-28453941 None:intergenic
TTGAATTCTTTGCACTTGTT+TGG 0.303242 8_1:-28453949 None:intergenic
GTTCAAAAGGGTGAGGGTAT+TGG 0.366925 8_1:-28453016 None:intergenic
GGGTATGAATGGAGAAAATA+TGG 0.368996 8_1:+28453740 Msa1188270:CDS
CAATCTTGTTTGGTTGGAGT+TGG 0.387905 8_1:-28454107 None:intergenic
ACCTTGAGTATTTGGAATTG+AGG 0.393271 8_1:-28453775 None:intergenic
AATCTTGTTTGGTTGGAGTT+GGG 0.426902 8_1:-28454106 None:intergenic
GAGATCTCCTGAGATTTAGT+TGG 0.441487 8_1:-28453072 None:intergenic
ATCTACAAAAGCCCTAGAAA+AGG 0.443182 8_1:-28454389 None:intergenic
AAGGGACAATCTTGTTTGGT+TGG 0.445134 8_1:-28454113 None:intergenic
TCAGAATGTCCAACAGATGA+TGG 0.456231 8_1:+28453719 Msa1188270:CDS
GTTGTTAAAGCTAAGCAATA+TGG 0.457680 8_1:-28454078 None:intergenic
AGATTTAGTTGGACTAATGA+AGG 0.473744 8_1:-28453061 None:intergenic
CGTGAGTTTGCAAACCAGCT+TGG 0.479698 8_1:+28452910 Msa1188270:CDS
TTCAGTACTCGAACATTGTA+AGG 0.480995 8_1:+28454151 Msa1188270:CDS
TTTGAACAAACATCACAAAA+CGG 0.482778 8_1:+28453032 Msa1188270:CDS
CATTAGTCCAACTAAATCTC+AGG 0.483913 8_1:+28453065 Msa1188270:CDS
TTCCTTGAATATTGATTACC+TGG 0.493626 8_1:+28454196 Msa1188270:CDS
AACCAGGTAATCAATATTCA+AGG 0.496471 8_1:-28454198 None:intergenic
GAAATATCTAAAGTGTGCTC+AGG 0.504315 8_1:-28454224 None:intergenic
TCTACAAAAGCCCTAGAAAA+GGG 0.519570 8_1:-28454388 None:intergenic
TTTGTGATGTTTGTTCAAAA+GGG 0.523519 8_1:-28453028 None:intergenic
ATCAATATTCAAGGAAGGTG+AGG 0.528994 8_1:-28454189 None:intergenic
CATACTTCCACCACTGGTAG+AGG 0.539107 8_1:+28453099 Msa1188270:CDS
CATTCATACCCATCATCTGT+TGG 0.541481 8_1:-28453728 None:intergenic
TTATTACAAGTTGTCCAAGC+TGG 0.545077 8_1:-28452924 None:intergenic
CAACAGATGATGGGTATGAA+TGG 0.546718 8_1:+28453729 Msa1188270:CDS
GTAGAGGATCTTACAAAAGA+AGG 0.546964 8_1:+28453115 Msa1188270:CDS
TAATATGTGGTCTTATATGA+AGG 0.547746 8_1:-28453981 None:intergenic
TAGAAATGAGGCAATGGAGG+AGG 0.549808 8_1:+28452873 Msa1188270:CDS
AATTATGGATCTTAGAAATG+AGG 0.549930 8_1:+28452861 None:intergenic
ATATATGCAGGGACTACTAC+AGG 0.552760 8_1:+28453892 Msa1188270:intron
TTTGTAAGATCCTCTACCAG+TGG 0.556118 8_1:-28453109 None:intergenic
AAGGATATGATGATGATGTA+TGG 0.557692 8_1:+28454317 Msa1188270:CDS
GTTGACAAGAACAAGATGTT+GGG 0.558462 8_1:-28452974 None:intergenic
GATGAATCATCATCATGAGT+TGG 0.560242 8_1:+28452951 Msa1188270:CDS
CATCTGAGTTATTGCAAGTG+TGG 0.563470 8_1:-28454010 None:intergenic
TCCTCAATTCCAAATACTCA+AGG 0.566315 8_1:+28453774 Msa1188270:CDS
AACTACATCAACATGGGAGA+AGG 0.572317 8_1:+28453694 Msa1188270:CDS
TCACAACATACTTCCACCAC+TGG 0.575996 8_1:+28453093 Msa1188270:CDS
GTAAGATCCTCTACCAGTGG+TGG 0.578848 8_1:-28453106 None:intergenic
ATTGTGATCATGAGGAGAAG+TGG 0.579266 8_1:-28454048 None:intergenic
CAGAATGTCCAACAGATGAT+GGG 0.586212 8_1:+28453720 Msa1188270:CDS
TTGTGATCATGAGGAGAAGT+GGG 0.590420 8_1:-28454047 None:intergenic
GGATCTTAGAAATGAGGCAA+TGG 0.593677 8_1:+28452867 Msa1188270:CDS
TGGAGGAGGAGCTAGTGAGA+GGG 0.597611 8_1:+28452887 Msa1188270:CDS
GATGTTTGTTCAAAAGGGTG+AGG 0.598856 8_1:-28453023 None:intergenic
ATTAATAATAAATAAAACAC+AGG 0.602532 8_1:-28454426 None:intergenic
TGTTGACAAGAACAAGATGT+TGG 0.603924 8_1:-28452975 None:intergenic
ATGGAGGAGGAGCTAGTGAG+AGG 0.606187 8_1:+28452886 Msa1188270:CDS
TCTTAGAAATGAGGCAATGG+AGG 0.606927 8_1:+28452870 Msa1188270:CDS
GAGGAAGTATTGTGATCATG+AGG 0.607427 8_1:-28454056 None:intergenic
TCAATATTCAAGGAAGGTGA+GGG 0.611078 8_1:-28454188 None:intergenic
GTTAAAGCTAAGCAATATGG+AGG 0.618068 8_1:-28454075 None:intergenic
AGGTAATCAATATTCAAGGA+AGG 0.620262 8_1:-28454194 None:intergenic
CTGAGTTATTGCAAGTGTGG+CGG 0.632598 8_1:-28454007 None:intergenic
AAGTGTGCTCAGGAGAAACC+AGG 0.635271 8_1:-28454214 None:intergenic
ATTGAGTGCTACTACTGACT+TGG 0.641003 8_1:-28454259 None:intergenic
ATGTTTGTTCAAAAGGGTGA+GGG 0.642130 8_1:-28453022 None:intergenic
TGAATCTGATGATGATCACA+AGG 0.649265 8_1:+28454298 Msa1188270:CDS
TATGTGGTCTTATATGAAGG+AGG 0.655421 8_1:-28453978 None:intergenic
AGTGTGGCGGTCGTAATATG+TGG 0.655558 8_1:-28453994 None:intergenic
AGTACTCGAACATTGTAAGG+AGG 0.678069 8_1:+28454154 Msa1188270:CDS
AAGGGTAAAAGAAATCACGA+TGG 0.749869 8_1:-28454370 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATTATATATATAAT+TGG - chr8_1:28453496-28453515 None:intergenic 0.0%
!!! TTATATATATAATATTTTTT+AGG + chr8_1:28453497-28453516 Msa1188270:intron 0.0%
!! AAAAATATTATATATATAAT+TGG - chr8_1:28453496-28453515 None:intergenic 0.0%
!!! TTATATATATAATATTTTTT+AGG + chr8_1:28453497-28453516 Msa1188270:intron 0.0%
!!! TATTTTTTTTTAGATTCATA+TGG + chr8_1:28453349-28453368 Msa1188270:intron 10.0%
!!! AGTAATTTTTTGTTTATAAT+AGG + chr8_1:28453426-28453445 Msa1188270:intron 10.0%
!!! GTAATTTTTTGTTTATAATA+GGG + chr8_1:28453427-28453446 Msa1188270:intron 10.0%
!! TATATATTAATTCAATTCAT+TGG - chr8_1:28453877-28453896 None:intergenic 10.0%
!! ATTAATAATAAATAAAACAC+AGG - chr8_1:28454429-28454448 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTGTTTG+AGG + chr8_1:28454506-28454525 Msa1188270:three_prime_UTR 10.0%
!!! TTTTTTTTTTTTTTGTTTGA+GGG + chr8_1:28454507-28454526 Msa1188270:three_prime_UTR 10.0%
!!! TATTTTTTTTTAGATTCATA+TGG + chr8_1:28453349-28453368 Msa1188270:intron 10.0%
!!! AGTAATTTTTTGTTTATAAT+AGG + chr8_1:28453426-28453445 Msa1188270:intron 10.0%
!!! GTAATTTTTTGTTTATAATA+GGG + chr8_1:28453427-28453446 Msa1188270:intron 10.0%
!! TATATATTAATTCAATTCAT+TGG - chr8_1:28453877-28453896 None:intergenic 10.0%
!! ATTAATAATAAATAAAACAC+AGG - chr8_1:28454429-28454448 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTGTTTG+AGG + chr8_1:28454506-28454525 Msa1188270:three_prime_UTR 10.0%
!!! TTTTTTTTTTTTTTGTTTGA+GGG + chr8_1:28454507-28454526 Msa1188270:three_prime_UTR 10.0%
!! AATTGAATTAATATATATGC+AGG + chr8_1:28453880-28453899 Msa1188270:intron 15.0%
!! ATTGAATTAATATATATGCA+GGG + chr8_1:28453881-28453900 Msa1188270:intron 15.0%
!!! TTTTTATATATTCTTCTGAA+AGG + chr8_1:28454465-28454484 Msa1188270:three_prime_UTR 15.0%
!! AATTGAATTAATATATATGC+AGG + chr8_1:28453880-28453899 Msa1188270:intron 15.0%
!! ATTGAATTAATATATATGCA+GGG + chr8_1:28453881-28453900 Msa1188270:intron 15.0%
!!! TTTTTATATATTCTTCTGAA+AGG + chr8_1:28454465-28454484 Msa1188270:three_prime_UTR 15.0%
!! AAGAAAAGAATTAGTAAACA+TGG - chr8_1:28453169-28453188 None:intergenic 20.0%
!! AAGAAAAGAATTAGTAAACA+TGG - chr8_1:28453169-28453188 None:intergenic 20.0%
! TTTGTGATGTTTGTTCAAAA+GGG - chr8_1:28453031-28453050 None:intergenic 25.0%
!! TTTTGTGATGTTTGTTCAAA+AGG - chr8_1:28453032-28453051 None:intergenic 25.0%
! TTTGAACAAACATCACAAAA+CGG + chr8_1:28453032-28453051 Msa1188270:CDS 25.0%
! TTGTCCTTTCATTTGTTTAA+AGG + chr8_1:28453205-28453224 Msa1188270:intron 25.0%
!!! TTTTTGTTTATAATAGGGAC+CGG + chr8_1:28453432-28453451 Msa1188270:intron 25.0%
! TTATAATCATGTTGTTCGTT+TGG + chr8_1:28453544-28453563 Msa1188270:intron 25.0%
! GTTTATGCAAAAAGAGTTAA+TGG + chr8_1:28453641-28453660 Msa1188270:intron 25.0%
! TCAAGAGAAGATTTATTAGT+AGG - chr8_1:28453853-28453872 None:intergenic 25.0%
!!! TAATATGTGGTCTTATATGA+AGG - chr8_1:28453984-28454003 None:intergenic 25.0%
! GAATCATGTGATGATAAAAA+GGG - chr8_1:28454134-28454153 None:intergenic 25.0%
! TGAATCATGTGATGATAAAA+AGG - chr8_1:28454135-28454154 None:intergenic 25.0%
!! ATTTCTTTTACCCTTTTCTA+GGG + chr8_1:28454378-28454397 Msa1188270:CDS 25.0%
! TTTGTGATGTTTGTTCAAAA+GGG - chr8_1:28453031-28453050 None:intergenic 25.0%
!! TTTTGTGATGTTTGTTCAAA+AGG - chr8_1:28453032-28453051 None:intergenic 25.0%
! TTTGAACAAACATCACAAAA+CGG + chr8_1:28453032-28453051 Msa1188270:CDS 25.0%
! TTGTCCTTTCATTTGTTTAA+AGG + chr8_1:28453205-28453224 Msa1188270:intron 25.0%
!!! TTTTTGTTTATAATAGGGAC+CGG + chr8_1:28453432-28453451 Msa1188270:intron 25.0%
! TTATAATCATGTTGTTCGTT+TGG + chr8_1:28453544-28453563 Msa1188270:intron 25.0%
! GTTTATGCAAAAAGAGTTAA+TGG + chr8_1:28453641-28453660 Msa1188270:intron 25.0%
! TCAAGAGAAGATTTATTAGT+AGG - chr8_1:28453853-28453872 None:intergenic 25.0%
!!! TAATATGTGGTCTTATATGA+AGG - chr8_1:28453984-28454003 None:intergenic 25.0%
! GAATCATGTGATGATAAAAA+GGG - chr8_1:28454134-28454153 None:intergenic 25.0%
! TGAATCATGTGATGATAAAA+AGG - chr8_1:28454135-28454154 None:intergenic 25.0%
!! ATTTCTTTTACCCTTTTCTA+GGG + chr8_1:28454378-28454397 Msa1188270:CDS 25.0%
AGATTTAGTTGGACTAATGA+AGG - chr8_1:28453064-28453083 None:intergenic 30.0%
ACGTCCTTTAAACAAATGAA+AGG - chr8_1:28453212-28453231 None:intergenic 30.0%
!! TTTTGTTTATAATAGGGACC+GGG + chr8_1:28453433-28453452 Msa1188270:intron 30.0%
!! GGTTTGAGTTTTAATCAACA+AGG - chr8_1:28453475-28453494 None:intergenic 30.0%
CAGAAAAACTACATCAACAT+GGG + chr8_1:28453688-28453707 Msa1188270:intron 30.0%
TTGAATTCTTTGCACTTGTT+TGG - chr8_1:28453952-28453971 None:intergenic 30.0%
GTTGTTAAAGCTAAGCAATA+TGG - chr8_1:28454081-28454100 None:intergenic 30.0%
TAAAAAGGGACAATCTTGTT+TGG - chr8_1:28454120-28454139 None:intergenic 30.0%
AGGTAATCAATATTCAAGGA+AGG - chr8_1:28454197-28454216 None:intergenic 30.0%
! TTCCTTGAATATTGATTACC+TGG + chr8_1:28454196-28454215 Msa1188270:CDS 30.0%
AACCAGGTAATCAATATTCA+AGG - chr8_1:28454201-28454220 None:intergenic 30.0%
! AAGGATATGATGATGATGTA+TGG + chr8_1:28454317-28454336 Msa1188270:CDS 30.0%
! GATTTCTTTTACCCTTTTCT+AGG + chr8_1:28454377-28454396 Msa1188270:CDS 30.0%
AGATTTAGTTGGACTAATGA+AGG - chr8_1:28453064-28453083 None:intergenic 30.0%
ACGTCCTTTAAACAAATGAA+AGG - chr8_1:28453212-28453231 None:intergenic 30.0%
!! TTTTGTTTATAATAGGGACC+GGG + chr8_1:28453433-28453452 Msa1188270:intron 30.0%
!! GGTTTGAGTTTTAATCAACA+AGG - chr8_1:28453475-28453494 None:intergenic 30.0%
CAGAAAAACTACATCAACAT+GGG + chr8_1:28453688-28453707 Msa1188270:intron 30.0%
TTGAATTCTTTGCACTTGTT+TGG - chr8_1:28453952-28453971 None:intergenic 30.0%
GTTGTTAAAGCTAAGCAATA+TGG - chr8_1:28454081-28454100 None:intergenic 30.0%
TAAAAAGGGACAATCTTGTT+TGG - chr8_1:28454120-28454139 None:intergenic 30.0%
AGGTAATCAATATTCAAGGA+AGG - chr8_1:28454197-28454216 None:intergenic 30.0%
! TTCCTTGAATATTGATTACC+TGG + chr8_1:28454196-28454215 Msa1188270:CDS 30.0%
AACCAGGTAATCAATATTCA+AGG - chr8_1:28454201-28454220 None:intergenic 30.0%
! AAGGATATGATGATGATGTA+TGG + chr8_1:28454317-28454336 Msa1188270:CDS 30.0%
! GATTTCTTTTACCCTTTTCT+AGG + chr8_1:28454377-28454396 Msa1188270:CDS 30.0%
TTATTACAAGTTGTCCAAGC+TGG - chr8_1:28452927-28452946 None:intergenic 35.0%
GATGAATCATCATCATGAGT+TGG + chr8_1:28452951-28452970 Msa1188270:CDS 35.0%
GTTGACAAGAACAAGATGTT+GGG - chr8_1:28452977-28452996 None:intergenic 35.0%
TGTTGACAAGAACAAGATGT+TGG - chr8_1:28452978-28452997 None:intergenic 35.0%
ATGTTTGTTCAAAAGGGTGA+GGG - chr8_1:28453025-28453044 None:intergenic 35.0%
CATTAGTCCAACTAAATCTC+AGG + chr8_1:28453065-28453084 Msa1188270:CDS 35.0%
GTAGAGGATCTTACAAAAGA+AGG + chr8_1:28453115-28453134 Msa1188270:CDS 35.0%
AATGAAAGGACAAAGTGAGA+TGG - chr8_1:28453198-28453217 None:intergenic 35.0%
AAATGTACTAGGTTGTGGTT+TGG + chr8_1:28453596-28453615 Msa1188270:intron 35.0%
GCAGAAAAACTACATCAACA+TGG + chr8_1:28453687-28453706 Msa1188270:intron 35.0%
GGGTATGAATGGAGAAAATA+TGG + chr8_1:28453740-28453759 Msa1188270:CDS 35.0%
TCCTCAATTCCAAATACTCA+AGG + chr8_1:28453774-28453793 Msa1188270:CDS 35.0%
! ACCTTGAGTATTTGGAATTG+AGG - chr8_1:28453778-28453797 None:intergenic 35.0%
ATACACACACCTTGAGTATT+TGG - chr8_1:28453786-28453805 None:intergenic 35.0%
CTATATATGCAGAGGAATTG+AGG - chr8_1:28453814-28453833 None:intergenic 35.0%
CTATCTAGCTATATATGCAG+AGG - chr8_1:28453822-28453841 None:intergenic 35.0%
!! TATGTGGTCTTATATGAAGG+AGG - chr8_1:28453981-28454000 None:intergenic 35.0%
GTTAAAGCTAAGCAATATGG+AGG - chr8_1:28454078-28454097 None:intergenic 35.0%
! AATCTTGTTTGGTTGGAGTT+GGG - chr8_1:28454109-28454128 None:intergenic 35.0%
TTCAGTACTCGAACATTGTA+AGG + chr8_1:28454151-28454170 Msa1188270:CDS 35.0%
TCAATATTCAAGGAAGGTGA+GGG - chr8_1:28454191-28454210 None:intergenic 35.0%
ATCAATATTCAAGGAAGGTG+AGG - chr8_1:28454192-28454211 None:intergenic 35.0%
! GAAATATCTAAAGTGTGCTC+AGG - chr8_1:28454227-28454246 None:intergenic 35.0%
! TGAATCTGATGATGATCACA+AGG + chr8_1:28454298-28454317 Msa1188270:CDS 35.0%
AAGGGTAAAAGAAATCACGA+TGG - chr8_1:28454373-28454392 None:intergenic 35.0%
TCTACAAAAGCCCTAGAAAA+GGG - chr8_1:28454391-28454410 None:intergenic 35.0%
ATCTACAAAAGCCCTAGAAA+AGG - chr8_1:28454392-28454411 None:intergenic 35.0%
TTATTACAAGTTGTCCAAGC+TGG - chr8_1:28452927-28452946 None:intergenic 35.0%
GATGAATCATCATCATGAGT+TGG + chr8_1:28452951-28452970 Msa1188270:CDS 35.0%
GTTGACAAGAACAAGATGTT+GGG - chr8_1:28452977-28452996 None:intergenic 35.0%
TGTTGACAAGAACAAGATGT+TGG - chr8_1:28452978-28452997 None:intergenic 35.0%
ATGTTTGTTCAAAAGGGTGA+GGG - chr8_1:28453025-28453044 None:intergenic 35.0%
CATTAGTCCAACTAAATCTC+AGG + chr8_1:28453065-28453084 Msa1188270:CDS 35.0%
GTAGAGGATCTTACAAAAGA+AGG + chr8_1:28453115-28453134 Msa1188270:CDS 35.0%
AATGAAAGGACAAAGTGAGA+TGG - chr8_1:28453198-28453217 None:intergenic 35.0%
AAATGTACTAGGTTGTGGTT+TGG + chr8_1:28453596-28453615 Msa1188270:intron 35.0%
GCAGAAAAACTACATCAACA+TGG + chr8_1:28453687-28453706 Msa1188270:intron 35.0%
GGGTATGAATGGAGAAAATA+TGG + chr8_1:28453740-28453759 Msa1188270:CDS 35.0%
TCCTCAATTCCAAATACTCA+AGG + chr8_1:28453774-28453793 Msa1188270:CDS 35.0%
! ACCTTGAGTATTTGGAATTG+AGG - chr8_1:28453778-28453797 None:intergenic 35.0%
ATACACACACCTTGAGTATT+TGG - chr8_1:28453786-28453805 None:intergenic 35.0%
CTATATATGCAGAGGAATTG+AGG - chr8_1:28453814-28453833 None:intergenic 35.0%
CTATCTAGCTATATATGCAG+AGG - chr8_1:28453822-28453841 None:intergenic 35.0%
!! TATGTGGTCTTATATGAAGG+AGG - chr8_1:28453981-28454000 None:intergenic 35.0%
GTTAAAGCTAAGCAATATGG+AGG - chr8_1:28454078-28454097 None:intergenic 35.0%
! AATCTTGTTTGGTTGGAGTT+GGG - chr8_1:28454109-28454128 None:intergenic 35.0%
TTCAGTACTCGAACATTGTA+AGG + chr8_1:28454151-28454170 Msa1188270:CDS 35.0%
TCAATATTCAAGGAAGGTGA+GGG - chr8_1:28454191-28454210 None:intergenic 35.0%
ATCAATATTCAAGGAAGGTG+AGG - chr8_1:28454192-28454211 None:intergenic 35.0%
! GAAATATCTAAAGTGTGCTC+AGG - chr8_1:28454227-28454246 None:intergenic 35.0%
! TGAATCTGATGATGATCACA+AGG + chr8_1:28454298-28454317 Msa1188270:CDS 35.0%
AAGGGTAAAAGAAATCACGA+TGG - chr8_1:28454373-28454392 None:intergenic 35.0%
TCTACAAAAGCCCTAGAAAA+GGG - chr8_1:28454391-28454410 None:intergenic 35.0%
ATCTACAAAAGCCCTAGAAA+AGG - chr8_1:28454392-28454411 None:intergenic 35.0%
GGATCTTAGAAATGAGGCAA+TGG + chr8_1:28452867-28452886 Msa1188270:CDS 40.0%
TCTTAGAAATGAGGCAATGG+AGG + chr8_1:28452870-28452889 Msa1188270:CDS 40.0%
GATGTTTGTTCAAAAGGGTG+AGG - chr8_1:28453026-28453045 None:intergenic 40.0%
GAGATCTCCTGAGATTTAGT+TGG - chr8_1:28453075-28453094 None:intergenic 40.0%
TTTGTAAGATCCTCTACCAG+TGG - chr8_1:28453112-28453131 None:intergenic 40.0%
CTTCCTCGTTGAAATGTACT+AGG + chr8_1:28453585-28453604 Msa1188270:intron 40.0%
CAACCTAGTACATTTCAACG+AGG - chr8_1:28453591-28453610 None:intergenic 40.0%
CGTTGAAATGTACTAGGTTG+TGG + chr8_1:28453591-28453610 Msa1188270:intron 40.0%
AACTACATCAACATGGGAGA+AGG + chr8_1:28453694-28453713 Msa1188270:CDS 40.0%
TCAGAATGTCCAACAGATGA+TGG + chr8_1:28453719-28453738 Msa1188270:CDS 40.0%
CAGAATGTCCAACAGATGAT+GGG + chr8_1:28453720-28453739 Msa1188270:CDS 40.0%
CATTCATACCCATCATCTGT+TGG - chr8_1:28453731-28453750 None:intergenic 40.0%
!! CAACAGATGATGGGTATGAA+TGG + chr8_1:28453729-28453748 Msa1188270:CDS 40.0%
ATATATGCAGGGACTACTAC+AGG + chr8_1:28453892-28453911 Msa1188270:intron 40.0%
TTTGCACTTGTTTGGTTGCT+TGG - chr8_1:28453944-28453963 None:intergenic 40.0%
CATCTGAGTTATTGCAAGTG+TGG - chr8_1:28454013-28454032 None:intergenic 40.0%
TTGTGATCATGAGGAGAAGT+GGG - chr8_1:28454050-28454069 None:intergenic 40.0%
ATTGTGATCATGAGGAGAAG+TGG - chr8_1:28454051-28454070 None:intergenic 40.0%
!! GAGGAAGTATTGTGATCATG+AGG - chr8_1:28454059-28454078 None:intergenic 40.0%
! CAATCTTGTTTGGTTGGAGT+TGG - chr8_1:28454110-28454129 None:intergenic 40.0%
! AAGGGACAATCTTGTTTGGT+TGG - chr8_1:28454116-28454135 None:intergenic 40.0%
AGTACTCGAACATTGTAAGG+AGG + chr8_1:28454154-28454173 Msa1188270:CDS 40.0%
! ATTGAGTGCTACTACTGACT+TGG - chr8_1:28454262-28454281 None:intergenic 40.0%
GGATCTTAGAAATGAGGCAA+TGG + chr8_1:28452867-28452886 Msa1188270:CDS 40.0%
TCTTAGAAATGAGGCAATGG+AGG + chr8_1:28452870-28452889 Msa1188270:CDS 40.0%
GATGTTTGTTCAAAAGGGTG+AGG - chr8_1:28453026-28453045 None:intergenic 40.0%
GAGATCTCCTGAGATTTAGT+TGG - chr8_1:28453075-28453094 None:intergenic 40.0%
TTTGTAAGATCCTCTACCAG+TGG - chr8_1:28453112-28453131 None:intergenic 40.0%
CTTCCTCGTTGAAATGTACT+AGG + chr8_1:28453585-28453604 Msa1188270:intron 40.0%
CAACCTAGTACATTTCAACG+AGG - chr8_1:28453591-28453610 None:intergenic 40.0%
CGTTGAAATGTACTAGGTTG+TGG + chr8_1:28453591-28453610 Msa1188270:intron 40.0%
AACTACATCAACATGGGAGA+AGG + chr8_1:28453694-28453713 Msa1188270:CDS 40.0%
TCAGAATGTCCAACAGATGA+TGG + chr8_1:28453719-28453738 Msa1188270:CDS 40.0%
CAGAATGTCCAACAGATGAT+GGG + chr8_1:28453720-28453739 Msa1188270:CDS 40.0%
CATTCATACCCATCATCTGT+TGG - chr8_1:28453731-28453750 None:intergenic 40.0%
!! CAACAGATGATGGGTATGAA+TGG + chr8_1:28453729-28453748 Msa1188270:CDS 40.0%
ATATATGCAGGGACTACTAC+AGG + chr8_1:28453892-28453911 Msa1188270:intron 40.0%
TTTGCACTTGTTTGGTTGCT+TGG - chr8_1:28453944-28453963 None:intergenic 40.0%
CATCTGAGTTATTGCAAGTG+TGG - chr8_1:28454013-28454032 None:intergenic 40.0%
TTGTGATCATGAGGAGAAGT+GGG - chr8_1:28454050-28454069 None:intergenic 40.0%
ATTGTGATCATGAGGAGAAG+TGG - chr8_1:28454051-28454070 None:intergenic 40.0%
!! GAGGAAGTATTGTGATCATG+AGG - chr8_1:28454059-28454078 None:intergenic 40.0%
! CAATCTTGTTTGGTTGGAGT+TGG - chr8_1:28454110-28454129 None:intergenic 40.0%
! AAGGGACAATCTTGTTTGGT+TGG - chr8_1:28454116-28454135 None:intergenic 40.0%
AGTACTCGAACATTGTAAGG+AGG + chr8_1:28454154-28454173 Msa1188270:CDS 40.0%
! ATTGAGTGCTACTACTGACT+TGG - chr8_1:28454262-28454281 None:intergenic 40.0%
TAGAAATGAGGCAATGGAGG+AGG + chr8_1:28452873-28452892 Msa1188270:CDS 45.0%
! GTTCAAAAGGGTGAGGGTAT+TGG - chr8_1:28453019-28453038 None:intergenic 45.0%
TCACAACATACTTCCACCAC+TGG + chr8_1:28453093-28453112 Msa1188270:CDS 45.0%
GGAGCTACTAGCTATTATCC+CGG - chr8_1:28453454-28453473 None:intergenic 45.0%
CTGAGTTATTGCAAGTGTGG+CGG - chr8_1:28454010-28454029 None:intergenic 45.0%
TAGAAATGAGGCAATGGAGG+AGG + chr8_1:28452873-28452892 Msa1188270:CDS 45.0%
! GTTCAAAAGGGTGAGGGTAT+TGG - chr8_1:28453019-28453038 None:intergenic 45.0%
TCACAACATACTTCCACCAC+TGG + chr8_1:28453093-28453112 Msa1188270:CDS 45.0%
GGAGCTACTAGCTATTATCC+CGG - chr8_1:28453454-28453473 None:intergenic 45.0%
CTGAGTTATTGCAAGTGTGG+CGG - chr8_1:28454010-28454029 None:intergenic 45.0%
CGTGAGTTTGCAAACCAGCT+TGG + chr8_1:28452910-28452929 Msa1188270:CDS 50.0%
CATACTTCCACCACTGGTAG+AGG + chr8_1:28453099-28453118 Msa1188270:CDS 50.0%
GTAAGATCCTCTACCAGTGG+TGG - chr8_1:28453109-28453128 None:intergenic 50.0%
AGTGTGGCGGTCGTAATATG+TGG - chr8_1:28453997-28454016 None:intergenic 50.0%
AAGTGTGCTCAGGAGAAACC+AGG - chr8_1:28454217-28454236 None:intergenic 50.0%
CGTGAGTTTGCAAACCAGCT+TGG + chr8_1:28452910-28452929 Msa1188270:CDS 50.0%
CATACTTCCACCACTGGTAG+AGG + chr8_1:28453099-28453118 Msa1188270:CDS 50.0%
GTAAGATCCTCTACCAGTGG+TGG - chr8_1:28453109-28453128 None:intergenic 50.0%
AGTGTGGCGGTCGTAATATG+TGG - chr8_1:28453997-28454016 None:intergenic 50.0%
AAGTGTGCTCAGGAGAAACC+AGG - chr8_1:28454217-28454236 None:intergenic 50.0%
ATGGAGGAGGAGCTAGTGAG+AGG + chr8_1:28452886-28452905 Msa1188270:CDS 55.0%
TGGAGGAGGAGCTAGTGAGA+GGG + chr8_1:28452887-28452906 Msa1188270:CDS 55.0%
ATGGAGGAGGAGCTAGTGAG+AGG + chr8_1:28452886-28452905 Msa1188270:CDS 55.0%
TGGAGGAGGAGCTAGTGAGA+GGG + chr8_1:28452887-28452906 Msa1188270:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 28452865 28454538 28452865 ID=Msa1188270;Name=Msa1188270
chr8_1 mRNA 28452865 28454538 28452865 ID=Msa1188270-mRNA-1;Parent=Msa1188270;Name=Msa1188270-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.33|1|1|1|3|129|294
chr8_1 exon 28452865 28453136 28452865 ID=Msa1188270-mRNA-1:exon:10012;Parent=Msa1188270-mRNA-1
chr8_1 exon 28453691 28453795 28453691 ID=Msa1188270-mRNA-1:exon:10013;Parent=Msa1188270-mRNA-1
chr8_1 exon 28453902 28454538 28453902 ID=Msa1188270-mRNA-1:exon:10014;Parent=Msa1188270-mRNA-1
chr8_1 CDS 28452865 28453136 28452865 ID=Msa1188270-mRNA-1:cds;Parent=Msa1188270-mRNA-1
chr8_1 CDS 28453691 28453795 28453691 ID=Msa1188270-mRNA-1:cds;Parent=Msa1188270-mRNA-1
chr8_1 CDS 28453902 28454409 28453902 ID=Msa1188270-mRNA-1:cds;Parent=Msa1188270-mRNA-1
chr8_1 three_prime_UTR 28454410 28454538 28454410 ID=Msa1188270-mRNA-1:three_prime_utr;Parent=Msa1188270-mRNA-1
Gene Sequence

>Msa1188270

ATGGATCTTAGAAATGAGGCAATGGAGGAGGAGCTAGTGAGAGGGCGTGAGTTTGCAAACCAGCTTGGACAACTTGTAATAACATTGATGAATCATCATCATGAGTTGGCCCAACATCTTGTTCTTGTCAACAACATTATCAACTCATTTACCAATACCCTCACCCTTTTGAACAAACATCACAAAACGGATTCTTCCTTCATTAGTCCAACTAAATCTCAGGAGATCTCACAACATACTTCCACCACTGGTAGAGGATCTTACAAAAGAAGAAAAACTACATCAACATGGGAGAAGGTGTCAGAATGTCCAACAGATGATGGGTATGAATGGAGAAAATATGGTCAAAAAACAATCCTCAATTCCAAATACTCAAGGGACTACTACAGGTGTACTCACAAGCTTGATCAAAGATGCCAAGCAACCAAACAAGTGCAAAGAATTCAAGAGAAGCCTCCTTCATATAAGACCACATATTACGACCGCCACACTTGCAATAACTCAGATGAAATCATATTTGAACCCACTTCTCCTCATGATCACAATACTTCCTCCATATTGCTTAGCTTTAACAACACATTCCCAACTCCAACCAAACAAGATTGTCCCTTTTTATCATCACATGATTCAGTACTCGAACATTGTAAGGAGGAATTAGTAATTCCCTCACCTTCCTTGAATATTGATTACCTGGTTTCTCCTGAGCACACTTTAGATATTTCTATTTCTACAAGCCAAGTCAGTAGTAGCACTCAATCATCATCAACTACACTTGAATCTGATGATGATCACAAGGATATGATGATGATGTATGGCGATCTCTTCTATGATTCTGTTGAGCTTGACCATCGTGATTTCTTTTACCCTTTTCTAGGGCTTTTGTAG

Protein sequence

>Msa1188270

MDLRNEAMEEELVRGREFANQLGQLVITLMNHHHELAQHLVLVNNIINSFTNTLTLLNKHHKTDSSFISPTKSQEISQHTSTTGRGSYKRRKTTSTWEKVSECPTDDGYEWRKYGQKTILNSKYSRDYYRCTHKLDQRCQATKQVQRIQEKPPSYKTTYYDRHTCNNSDEIIFEPTSPHDHNTSSILLSFNNTFPTPTKQDCPFLSSHDSVLEHCKEELVIPSPSLNIDYLVSPEHTLDISISTSQVSSSTQSSSTTLESDDDHKDMMMMYGDLFYDSVELDHRDFFYPFLGLL*