Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1308440 | XP_013443746.1 | 94.872 | 468 | 24 | 0 | 13 | 480 | 97 | 564 | 0.0 | 919 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1308440 | sp|Q9M219|MTEFH_ARATH | 47.854 | 466 | 240 | 2 | 14 | 478 | 91 | 554 | 8.20e-155 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1308440 | A0A072TKN3 | 94.872 | 468 | 24 | 0 | 13 | 480 | 97 | 564 | 0.0 | 919 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1308440 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1271180 | Msa1308440 | 0.807206 | 5.661219e-50 | -8.615850e-47 |
| Msa1184090 | Msa1308440 | 0.815890 | 7.332471e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1308440 | MtrunA17_Chr8g0335121 | 94.872 | 468 | 24 | 0 | 13 | 480 | 97 | 564 | 0.0 | 919 |
| Msa1308440 | MtrunA17_Chr7g0249711 | 57.940 | 466 | 187 | 3 | 13 | 472 | 114 | 576 | 0.0 | 561 |
| Msa1308440 | MtrunA17_Chr5g0438661 | 24.183 | 459 | 330 | 7 | 14 | 468 | 163 | 607 | 4.86e-42 | 158 |
| Msa1308440 | MtrunA17_Chr7g0258521 | 26.490 | 151 | 108 | 3 | 321 | 470 | 313 | 461 | 8.94e-13 | 70.1 |
| Msa1308440 | MtrunA17_Chr7g0258521 | 45.000 | 80 | 40 | 2 | 13 | 88 | 107 | 186 | 2.95e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1308440 | AT3G60400.1 | 47.854 | 466 | 240 | 2 | 14 | 478 | 91 | 554 | 8.33e-156 | 454 |
| Msa1308440 | AT4G19650.2 | 24.464 | 466 | 321 | 7 | 13 | 468 | 140 | 584 | 7.62e-40 | 152 |
| Msa1308440 | AT4G19650.1 | 24.464 | 466 | 321 | 7 | 13 | 468 | 123 | 567 | 1.04e-39 | 151 |
| Msa1308440 | AT5G06811.1 | 23.605 | 466 | 324 | 10 | 14 | 467 | 125 | 570 | 3.47e-30 | 124 |
| Msa1308440 | AT5G06810.1 | 23.922 | 464 | 323 | 10 | 13 | 467 | 132 | 574 | 1.14e-28 | 119 |
| Msa1308440 | AT5G45113.1 | 23.515 | 421 | 292 | 13 | 57 | 468 | 7 | 406 | 5.92e-22 | 98.2 |
Find 82 sgRNAs with CRISPR-Local
Find 337 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGTGTGCTTTGTGAATT+TGG | 0.075830 | 8_4:-4724587 | Msa1308440:CDS |
| TCTCTAGAGTTTCAGGATTT+TGG | 0.108976 | 8_4:+4723607 | None:intergenic |
| TTTGATTGCCTTCTACATTT+AGG | 0.135769 | 8_4:-4723684 | Msa1308440:CDS |
| GGGACACTCCTTAGAGCTTT+TGG | 0.239993 | 8_4:-4723556 | Msa1308440:CDS |
| TAATTTCCTATGTCAGGATA+TGG | 0.244795 | 8_4:-4723577 | Msa1308440:CDS |
| TCATGAAGCTCGAAATTTAT+TGG | 0.254864 | 8_4:+4723329 | None:intergenic |
| AAACATTTGATTCTTGAGTA+TGG | 0.263491 | 8_4:-4724209 | Msa1308440:CDS |
| TTGATTGCCTTCTACATTTA+GGG | 0.265986 | 8_4:-4723683 | Msa1308440:CDS |
| TTAAATTTCATGCATACTAT+TGG | 0.285045 | 8_4:-4723780 | Msa1308440:CDS |
| AATTGCTCAAACCAATGTTT+TGG | 0.304518 | 8_4:+4723357 | None:intergenic |
| CTTTGTTTGTTGAAAAGATA+TGG | 0.308280 | 8_4:-4724482 | Msa1308440:CDS |
| CATGAAGCTCGAAATTTATT+GGG | 0.313412 | 8_4:+4723330 | None:intergenic |
| ACCTTTATCATGCTCTTCAT+TGG | 0.329479 | 8_4:+4723863 | None:intergenic |
| TAAGCTTGGTATGATTTATA+CGG | 0.362686 | 8_4:-4724552 | Msa1308440:CDS |
| TTCATGCATACTATTGGCTT+TGG | 0.365567 | 8_4:-4723774 | Msa1308440:CDS |
| CATGTGATTTAAGATATTCA+TGG | 0.366992 | 8_4:+4723737 | None:intergenic |
| CCCAATGAAGAGCATGATAA+AGG | 0.371844 | 8_4:-4723864 | Msa1308440:CDS |
| ATCTGAACCTCGGCTTAATT+CGG | 0.372746 | 8_4:+4723496 | None:intergenic |
| GGAGTTGTTGAGTCTCAATT+TGG | 0.376264 | 8_4:-4724099 | Msa1308440:CDS |
| ATAGGTTGCTTTCTGATTTG+AGG | 0.392968 | 8_4:-4724370 | Msa1308440:CDS |
| CCTTTATCATGCTCTTCATT+GGG | 0.406357 | 8_4:+4723864 | None:intergenic |
| AAAGATTAATTTCCTATGTC+AGG | 0.406425 | 8_4:-4723583 | Msa1308440:CDS |
| GGGCTATGGGTTTACGTGAA+TGG | 0.411227 | 8_4:-4723947 | Msa1308440:CDS |
| TTATCGATGATGAGGTTGAT+AGG | 0.413270 | 8_4:-4724388 | Msa1308440:CDS |
| ATGTTTGGTATGATGTTTGT+AGG | 0.414620 | 8_4:-4724298 | Msa1308440:CDS |
| AAAAGTGTCCAAAAGCTCTA+AGG | 0.419374 | 8_4:+4723548 | None:intergenic |
| ATTCAATCCCTAAATGTAGA+AGG | 0.419800 | 8_4:+4723676 | None:intergenic |
| AGTGATGGTAAGGGGAAGAT+AGG | 0.419950 | 8_4:-4724251 | Msa1308440:CDS |
| CCCAATGTGATGAGGGCTAT+GGG | 0.438164 | 8_4:-4723960 | Msa1308440:CDS |
| TTTGTAATGTGCAAATTGTT+GGG | 0.448783 | 8_4:-4724457 | Msa1308440:CDS |
| GATTTGGGAGGGTGTGTTGA+AGG | 0.450135 | 8_4:-4724329 | Msa1308440:CDS |
| AATTTCCTATGTCAGGATAT+GGG | 0.450989 | 8_4:-4723576 | Msa1308440:CDS |
| GGAATGGATTCTAAAGGTCT+TGG | 0.453391 | 8_4:-4724038 | Msa1308440:CDS |
| TCGGTTGATTCTACAAGGTT+CGG | 0.454814 | 8_4:-4724120 | Msa1308440:CDS |
| AAGAACTATGCTCATGCGTT+GGG | 0.457899 | 8_4:-4724005 | Msa1308440:CDS |
| TTGAAGGGAATGTGGATGTT+TGG | 0.467882 | 8_4:-4724313 | Msa1308440:CDS |
| AGAAGAGGAGTTGATTGAAA+AGG | 0.470802 | 8_4:-4724186 | Msa1308440:CDS |
| CCCATAGCCCTCATCACATT+GGG | 0.482342 | 8_4:+4723960 | None:intergenic |
| AAACTATTCCATTGCAAGCA+TGG | 0.484064 | 8_4:-4723436 | Msa1308440:CDS |
| GATTCTTGAGTATGGAGAAG+AGG | 0.500875 | 8_4:-4724201 | Msa1308440:CDS |
| CGAGGTTCAGATTCCATATG+TGG | 0.503568 | 8_4:-4723485 | Msa1308440:CDS |
| TCCCAATGTGATGAGGGCTA+TGG | 0.506843 | 8_4:-4723961 | Msa1308440:CDS |
| ATTTGGGAGGGTGTGTTGAA+GGG | 0.510382 | 8_4:-4724328 | Msa1308440:CDS |
| GAAGAACTATGCTCATGCGT+TGG | 0.510932 | 8_4:-4724006 | Msa1308440:CDS |
| TTATGATTTGAGTGATGGTA+AGG | 0.517430 | 8_4:-4724261 | Msa1308440:CDS |
| GGATTTCCGTGGGATAAGCT+TGG | 0.517976 | 8_4:-4724566 | Msa1308440:CDS |
| AGGGTGTGTTGAAGGGAATG+TGG | 0.519392 | 8_4:-4724321 | Msa1308440:CDS |
| GGGAAGATAGGTGAACTCAT+TGG | 0.519466 | 8_4:-4724239 | Msa1308440:CDS |
| AAGTCAAAACATATAAATGC+CGG | 0.520806 | 8_4:+4723525 | None:intergenic |
| CACATTGGAATGGATTCTAA+AGG | 0.534379 | 8_4:-4724044 | Msa1308440:CDS |
| ACCCGGCTGCTCCAAAACAT+TGG | 0.539925 | 8_4:-4723368 | Msa1308440:CDS |
| GTTGCTTTCTGATTTGAGGT+TGG | 0.540360 | 8_4:-4724366 | Msa1308440:CDS |
| ACCCATAGCCCTCATCACAT+TGG | 0.543963 | 8_4:+4723959 | None:intergenic |
| TTAAGGCAATTCATGATGCA+AGG | 0.553764 | 8_4:-4723827 | Msa1308440:CDS |
| GCTGTTGAAACACATTGGAA+TGG | 0.554139 | 8_4:-4724054 | Msa1308440:CDS |
| CATGATAAAGGTTATCAAAG+TGG | 0.567037 | 8_4:-4723852 | Msa1308440:CDS |
| TTGTAGATTCAGTGTCGAGA+AGG | 0.567935 | 8_4:-4724153 | Msa1308440:CDS |
| AGTGTCCCATATCCTGACAT+AGG | 0.569168 | 8_4:+4723571 | None:intergenic |
| GGTATGATTTATACGGAGAG+TGG | 0.572636 | 8_4:-4724545 | Msa1308440:CDS |
| AGTCGCAACCATGCTTGCAA+TGG | 0.573982 | 8_4:+4723428 | None:intergenic |
| CGAATCTTCCCAATGTGATG+AGG | 0.576232 | 8_4:-4723968 | Msa1308440:CDS |
| ATGATTTGAGTGATGGTAAG+GGG | 0.577556 | 8_4:-4724259 | Msa1308440:CDS |
| AATATCTTAAATCACATGCA+TGG | 0.582398 | 8_4:-4723732 | Msa1308440:CDS |
| ATAGCTCGGTTGATTCTACA+AGG | 0.584030 | 8_4:-4724125 | Msa1308440:CDS |
| AATTTACTCATATTGTGAGA+CGG | 0.584295 | 8_4:+4723801 | None:intergenic |
| TATGATTTGAGTGATGGTAA+GGG | 0.587020 | 8_4:-4724260 | Msa1308440:CDS |
| CATGGTTGCGACTAGTGACA+AGG | 0.592546 | 8_4:-4723418 | Msa1308440:CDS |
| TAGATTCAGTGTCGAGAAGG+AGG | 0.595864 | 8_4:-4724150 | Msa1308440:CDS |
| GAATCTTCCCAATGTGATGA+GGG | 0.598004 | 8_4:-4723967 | Msa1308440:CDS |
| TTTGTGAATTTGGATTTCCG+TGG | 0.607087 | 8_4:-4724577 | Msa1308440:CDS |
| ATCATACCAAGCTTATCCCA+CGG | 0.620191 | 8_4:+4724560 | None:intergenic |
| TTGAAGCTGTTGAAACACAT+TGG | 0.621474 | 8_4:-4724059 | Msa1308440:CDS |
| TTGTGAATTTGGATTTCCGT+GGG | 0.625513 | 8_4:-4724576 | Msa1308440:CDS |
| CACATATGGAATCTGAACCT+CGG | 0.628454 | 8_4:+4723486 | None:intergenic |
| AGATAGGTGAACTCATTGGA+AGG | 0.629844 | 8_4:-4724235 | Msa1308440:CDS |
| AAGCACAACATGTGCCACAA+AGG | 0.652476 | 8_4:-4728611 | Msa1308440:intron |
| AAAACTCAAACTCATTGATG+GGG | 0.654476 | 8_4:+4724705 | None:intergenic |
| ATGGTTCTGAGATAAAGGGT+AGG | 0.659181 | 8_4:-4724505 | Msa1308440:CDS |
| TCGAGAAGGAGGAAATAGCT+CGG | 0.662293 | 8_4:-4724139 | Msa1308440:CDS |
| GAGGTTCAGATTCCATATGT+GGG | 0.667584 | 8_4:-4723484 | Msa1308440:CDS |
| TAGAGAACCGAATTAAGCCG+AGG | 0.677310 | 8_4:-4723503 | Msa1308440:CDS |
| ATGGTTGCGACTAGTGACAA+GGG | 0.685800 | 8_4:-4723417 | Msa1308440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATAATATTATTTA+AGG | + | chr8_4:4726734-4726753 | None:intergenic | 0.0% |
| !!! | AAAAAATTTAGTAAACTTTT+TGG | + | chr8_4:4724638-4724657 | None:intergenic | 10.0% |
| !! | TATTTGATTATTAATTAAAC+AGG | + | chr8_4:4726139-4726158 | None:intergenic | 10.0% |
| !!! | AAGAAGTAATTTTTTTTTTT+TGG | - | chr8_4:4726876-4726895 | Msa1308440:intron | 10.0% |
| !!! | NNNNATCAAATTTTTTGAAA+TGG | - | chr8_4:4727044-4727063 | Msa1308440:intron | 10.0% |
| !! | TATACATAAATAAACAGAAT+TGG | + | chr8_4:4723812-4723831 | None:intergenic | 15.0% |
| !!! | ATAATAAAAAGTTCTGATAT+CGG | + | chr8_4:4724003-4724022 | None:intergenic | 15.0% |
| !! | TTCACATATAAAAACTAAAT+TGG | - | chr8_4:4724294-4724313 | Msa1308440:CDS | 15.0% |
| !! | ATATAAAAACTAAATTGGTT+TGG | - | chr8_4:4724299-4724318 | Msa1308440:CDS | 15.0% |
| !!! | TTACATTTTCTTAAACTTTA+CGG | - | chr8_4:4725202-4725221 | Msa1308440:intron | 15.0% |
| !!! | TCATTTTTTTGTTTTATGAA+TGG | + | chr8_4:4725515-4725534 | None:intergenic | 15.0% |
| !!! | TTTTGTATGTATTTTTTTAC+TGG | + | chr8_4:4726419-4726438 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTTTTGGTAACA+AGG | - | chr8_4:4726884-4726903 | Msa1308440:intron | 15.0% |
| !!! | TATTTCTAATTACACAATTT+TGG | + | chr8_4:4727074-4727093 | None:intergenic | 15.0% |
| !! | AAATTGTGTAATTAGAAATA+AGG | - | chr8_4:4727074-4727093 | Msa1308440:intron | 15.0% |
| !! | AATTGTGTAATTAGAAATAA+GGG | - | chr8_4:4727075-4727094 | Msa1308440:intron | 15.0% |
| !! | AAAGAAAGAAAGAAAAAAAG+AGG | - | chr8_4:4723903-4723922 | Msa1308440:CDS | 20.0% |
| !! | TTTATATCAATCTTTACAGT+GGG | + | chr8_4:4725921-4725940 | None:intergenic | 20.0% |
| !! | TAAGTTAGAAAAAGAAAAAG+AGG | - | chr8_4:4726178-4726197 | Msa1308440:intron | 20.0% |
| !! | ATATAATAGTTGTGTTTCAT+TGG | + | chr8_4:4726273-4726292 | None:intergenic | 20.0% |
| !! | AATACATACAAAAAAACAAG+TGG | - | chr8_4:4726426-4726445 | Msa1308440:intron | 20.0% |
| !! | ATACATACAAAAAAACAAGT+GGG | - | chr8_4:4726427-4726446 | Msa1308440:intron | 20.0% |
| !! | TCTTAATTAATATACGTGTT+TGG | + | chr8_4:4726455-4726474 | None:intergenic | 20.0% |
| !!! | AAAACATTCTTTTTTTTGTC+AGG | - | chr8_4:4726831-4726850 | Msa1308440:intron | 20.0% |
| !!! | AAACATTCTTTTTTTTGTCA+GGG | - | chr8_4:4726832-4726851 | Msa1308440:intron | 20.0% |
| !!! | NATCAAATTTTTTGAAATGG+AGG | - | chr8_4:4727047-4727066 | Msa1308440:intron | 20.0% |
| !!! | TAGTAATAATAATGCAGTTT+TGG | + | chr8_4:4727135-4727154 | None:intergenic | 20.0% |
| !! | AAAACTGCATTATTATTACT+AGG | - | chr8_4:4727134-4727153 | Msa1308440:intron | 20.0% |
| !!! | TTAACTTTTCCTTTTGTTTT+TGG | - | chr8_4:4727528-4727547 | Msa1308440:intron | 20.0% |
| !! | TTAAATTTCATGCATACTAT+TGG | - | chr8_4:4728176-4728195 | Msa1308440:intron | 20.0% |
| !!! | AATCATGTGTTTTGCTTTTT+TGG | + | chr8_4:4723415-4723434 | None:intergenic | 25.0% |
| ! | TACTCAACTACTACTAATTT+AGG | + | chr8_4:4723442-4723461 | None:intergenic | 25.0% |
| !!! | GAATTTTTGGCTTCTTTATA+TGG | + | chr8_4:4723562-4723581 | None:intergenic | 25.0% |
| ! | TAAAATTGTGAAACTTGTAC+CGG | - | chr8_4:4723671-4723690 | Msa1308440:CDS | 25.0% |
| ! | TTTGCAAAATAGTCAACTTA+AGG | + | chr8_4:4723785-4723804 | None:intergenic | 25.0% |
| !!! | ATATGTGAACAATTTTGAGA+AGG | + | chr8_4:4724283-4724302 | None:intergenic | 25.0% |
| !!! | ACTAATTTGTTTTCCATTTC+TGG | - | chr8_4:4724443-4724462 | Msa1308440:CDS | 25.0% |
| ! | ATGATTATGGTAAAACTTAC+AGG | - | chr8_4:4724680-4724699 | Msa1308440:CDS | 25.0% |
| ! | TCAATCTGCATAATTTATAG+TGG | - | chr8_4:4724764-4724783 | Msa1308440:intron | 25.0% |
| ! | GACAAAATACATACTAAGTA+AGG | + | chr8_4:4724821-4724840 | None:intergenic | 25.0% |
| !!! | TTATATTTGGGACATGATTT+TGG | + | chr8_4:4724864-4724883 | None:intergenic | 25.0% |
| ! | TTGAAACCCATTCATATAAA+GGG | - | chr8_4:4724945-4724964 | Msa1308440:intron | 25.0% |
| ! | TTCAAAGTATGCATCTAATT+CGG | + | chr8_4:4724985-4725004 | None:intergenic | 25.0% |
| ! | CATACACAATTATAGATGTT+TGG | - | chr8_4:4725051-4725070 | Msa1308440:intron | 25.0% |
| ! | ACAATTATAGATGTTTGGAT+TGG | - | chr8_4:4725056-4725075 | Msa1308440:intron | 25.0% |
| !!! | GTTCTGTGTTTTTTGAATAA+AGG | + | chr8_4:4725306-4725325 | None:intergenic | 25.0% |
| !! | ACTACAACTTTTACTTGTTT+TGG | - | chr8_4:4725562-4725581 | Msa1308440:intron | 25.0% |
| ! | TTCAAGAAAACAAGAATAAC+TGG | - | chr8_4:4725618-4725637 | Msa1308440:intron | 25.0% |
| !! | AGAAAGACTAGATTTTCTAT+TGG | + | chr8_4:4725722-4725741 | None:intergenic | 25.0% |
| ! | CTTTATATCAATCTTTACAG+TGG | + | chr8_4:4725922-4725941 | None:intergenic | 25.0% |
| ! | AATCAAATAAGAAACCCTAA+AGG | - | chr8_4:4726150-4726169 | Msa1308440:intron | 25.0% |
| ! | TGTGTTTCATTGGAATTTAA+AGG | + | chr8_4:4726263-4726282 | None:intergenic | 25.0% |
| ! | TAATCAAAAAACAGCAGAAA+AGG | - | chr8_4:4726908-4726927 | Msa1308440:intron | 25.0% |
| !!! | TGATTATCTGTTTTGTTAAC+AGG | - | chr8_4:4727223-4727242 | Msa1308440:intron | 25.0% |
| ! | AAAAACTCAAACTCATTGAT+GGG | + | chr8_4:4727255-4727274 | None:intergenic | 25.0% |
| ! | CAAAAAAAGAACTTATCGTT+CGG | + | chr8_4:4727324-4727343 | None:intergenic | 25.0% |
| ! | TAAGCTTGGTATGATTTATA+CGG | - | chr8_4:4727404-4727423 | Msa1308440:intron | 25.0% |
| !!! | GGTTTTATGTTTAGGAAAAA+TGG | - | chr8_4:4727432-4727451 | Msa1308440:intron | 25.0% |
| !!! | AAAAATGGTTCTGAGATAAA+GGG | - | chr8_4:4727447-4727466 | Msa1308440:intron | 25.0% |
| !! | CTTTGTTTGTTGAAAAGATA+TGG | - | chr8_4:4727474-4727493 | Msa1308440:intron | 25.0% |
| !! | TTTTGTAATGTGCAAATTGT+TGG | - | chr8_4:4727498-4727517 | Msa1308440:intron | 25.0% |
| ! | TTTGTAATGTGCAAATTGTT+GGG | - | chr8_4:4727499-4727518 | Msa1308440:intron | 25.0% |
| !!! | GTGTTTTTGGATTTTGATTT+GGG | - | chr8_4:4727612-4727631 | Msa1308440:intron | 25.0% |
| ! | AAACATTTGATTCTTGAGTA+TGG | - | chr8_4:4727747-4727766 | Msa1308440:intron | 25.0% |
| !!! | ATGGTTTTTCGATAAAATCA+AGG | - | chr8_4:4728028-4728047 | Msa1308440:intron | 25.0% |
| !!! | TTTTTCGATAAAATCAAGGA+TGG | - | chr8_4:4728032-4728051 | Msa1308440:intron | 25.0% |
| !! | TTTTCGATAAAATCAAGGAT+GGG | - | chr8_4:4728033-4728052 | Msa1308440:intron | 25.0% |
| ! | AATTTACTCATATTGTGAGA+CGG | + | chr8_4:4728158-4728177 | None:intergenic | 25.0% |
| !! | CATGTGATTTAAGATATTCA+TGG | + | chr8_4:4728222-4728241 | None:intergenic | 25.0% |
| ! | AATATCTTAAATCACATGCA+TGG | - | chr8_4:4728224-4728243 | Msa1308440:intron | 25.0% |
| ! | AAAGATTAATTTCCTATGTC+AGG | - | chr8_4:4728373-4728392 | Msa1308440:intron | 25.0% |
| ! | AAGTCAAAACATATAAATGC+CGG | + | chr8_4:4728434-4728453 | None:intergenic | 25.0% |
| CAACTACTACTAATTTAGGT+TGG | + | chr8_4:4723438-4723457 | None:intergenic | 30.0% | |
| !!! | TATACCAAGCTCTTTTTTAG+AGG | + | chr8_4:4723975-4723994 | None:intergenic | 30.0% |
| TACATTCTTTGATTCTTCGA+TGG | - | chr8_4:4724077-4724096 | Msa1308440:CDS | 30.0% | |
| !! | TGATTGTATGATAGTGGAAA+AGG | + | chr8_4:4724144-4724163 | None:intergenic | 30.0% |
| TTCAAATGCAACAACATCAA+AGG | + | chr8_4:4724259-4724278 | None:intergenic | 30.0% | |
| AAAGTTCCTGATCATTTGAT+TGG | - | chr8_4:4724329-4724348 | Msa1308440:CDS | 30.0% | |
| CATAAACCAATCAAATGATC+AGG | + | chr8_4:4724338-4724357 | None:intergenic | 30.0% | |
| ! | CTCATGTATTTTATTGCTCT+TGG | - | chr8_4:4724478-4724497 | Msa1308440:CDS | 30.0% |
| GAAGTGTATAAATGAACTAC+TGG | + | chr8_4:4724542-4724561 | None:intergenic | 30.0% | |
| ACTAAGTAAGGAGTTTAGAT+TGG | + | chr8_4:4724809-4724828 | None:intergenic | 30.0% | |
| CTTGAAACCCATTCATATAA+AGG | - | chr8_4:4724944-4724963 | Msa1308440:intron | 30.0% | |
| TCAAAGTATGCATCTAATTC+GGG | + | chr8_4:4724984-4725003 | None:intergenic | 30.0% | |
| ! | GTCTATGTTATTAGCTTCTA+TGG | + | chr8_4:4725280-4725299 | None:intergenic | 30.0% |
| TCTTGAACCTATCAACAAAT+TGG | + | chr8_4:4725605-4725624 | None:intergenic | 30.0% | |
| !! | AGATTTTCTATTGGCTATGT+GGG | + | chr8_4:4725713-4725732 | None:intergenic | 30.0% |
| !! | TAGATTTTCTATTGGCTATG+TGG | + | chr8_4:4725714-4725733 | None:intergenic | 30.0% |
| CAAAAGAAAGCTACAAAGAA+AGG | + | chr8_4:4725861-4725880 | None:intergenic | 30.0% | |
| ! | CTTTCTTTGTAGCTTTCTTT+TGG | - | chr8_4:4725859-4725878 | Msa1308440:intron | 30.0% |
| ATACACAAACAAGAGTTTCT+AGG | + | chr8_4:4726111-4726130 | None:intergenic | 30.0% | |
| ! | TAGAAACTCTTGTTTGTGTA+TGG | - | chr8_4:4726110-4726129 | Msa1308440:intron | 30.0% |
| TCTAACTTACTTCACCTTTA+GGG | + | chr8_4:4726167-4726186 | None:intergenic | 30.0% | |
| TTCTAACTTACTTCACCTTT+AGG | + | chr8_4:4726168-4726187 | None:intergenic | 30.0% | |
| TATGTATGAGATGTTGTGAT+CGG | - | chr8_4:4726347-4726366 | Msa1308440:intron | 30.0% | |
| AATGCAAAAATGCTAATGGA+AGG | + | chr8_4:4726561-4726580 | None:intergenic | 30.0% | |
| GAGAAATGCAAAAATGCTAA+TGG | + | chr8_4:4726565-4726584 | None:intergenic | 30.0% | |
| AATAAGACATATGAAGAGCA+AGG | + | chr8_4:4726671-4726690 | None:intergenic | 30.0% | |
| AGAAAAGGAAAAACTACAGA+AGG | - | chr8_4:4726923-4726942 | Msa1308440:intron | 30.0% | |
| ! | TACTGACAAAACAGCTATTT+TGG | + | chr8_4:4727103-4727122 | None:intergenic | 30.0% |
| !! | AATAGCTGTTTTGTCAGTAT+TGG | - | chr8_4:4727104-4727123 | Msa1308440:intron | 30.0% |
| !! | ATAGCTGTTTTGTCAGTATT+GGG | - | chr8_4:4727105-4727124 | Msa1308440:intron | 30.0% |
| AAAACTCAAACTCATTGATG+GGG | + | chr8_4:4727254-4727273 | None:intergenic | 30.0% | |
| GAAAAACTCAAACTCATTGA+TGG | + | chr8_4:4727256-4727275 | None:intergenic | 30.0% | |
| !! | GAGTTTTTCTTTGAAAGCAT+TGG | - | chr8_4:4727267-4727286 | Msa1308440:intron | 30.0% |
| !! | GAAAAATGGTTCTGAGATAA+AGG | - | chr8_4:4727446-4727465 | Msa1308440:intron | 30.0% |
| !!! | GGTGTTTTTGGATTTTGATT+TGG | - | chr8_4:4727611-4727630 | Msa1308440:intron | 30.0% |
| !!! | TTTTTGGATTTTGATTTGGG+AGG | - | chr8_4:4727615-4727634 | Msa1308440:intron | 30.0% |
| !!! | TTTTGGATTTTGATTTGGGA+GGG | - | chr8_4:4727616-4727635 | Msa1308440:intron | 30.0% |
| ATGTTTGGTATGATGTTTGT+AGG | - | chr8_4:4727658-4727677 | Msa1308440:intron | 30.0% | |
| ! | GTGTTTTATGATTTGAGTGA+TGG | - | chr8_4:4727690-4727709 | Msa1308440:intron | 30.0% |
| TTATGATTTGAGTGATGGTA+AGG | - | chr8_4:4727695-4727714 | Msa1308440:intron | 30.0% | |
| TATGATTTGAGTGATGGTAA+GGG | - | chr8_4:4727696-4727715 | Msa1308440:intron | 30.0% | |
| CATGATAAAGGTTATCAAAG+TGG | - | chr8_4:4728104-4728123 | Msa1308440:intron | 30.0% | |
| !! | AGGTTATCAAAGTGGTTTTA+AGG | - | chr8_4:4728112-4728131 | Msa1308440:intron | 30.0% |
| TTTGATTGCCTTCTACATTT+AGG | - | chr8_4:4728272-4728291 | Msa1308440:intron | 30.0% | |
| TTGATTGCCTTCTACATTTA+GGG | - | chr8_4:4728273-4728292 | Msa1308440:intron | 30.0% | |
| ATTCAATCCCTAAATGTAGA+AGG | + | chr8_4:4728283-4728302 | None:intergenic | 30.0% | |
| !!! | ATCTTTTTCTCTAGAGTTTC+AGG | + | chr8_4:4728359-4728378 | None:intergenic | 30.0% |
| TAATTTCCTATGTCAGGATA+TGG | - | chr8_4:4728379-4728398 | Msa1308440:intron | 30.0% | |
| AATTTCCTATGTCAGGATAT+GGG | - | chr8_4:4728380-4728399 | Msa1308440:intron | 30.0% | |
| ! | AATTGCTCAAACCAATGTTT+TGG | + | chr8_4:4728602-4728621 | None:intergenic | 30.0% |
| CATGAAGCTCGAAATTTATT+GGG | + | chr8_4:4728629-4728648 | None:intergenic | 30.0% | |
| TCATGAAGCTCGAAATTTAT+TGG | + | chr8_4:4728630-4728649 | None:intergenic | 30.0% | |
| ! | CTATGTTTTGCTAACCTTTG+TGG | + | chr8_4:4723362-4723381 | None:intergenic | 35.0% |
| AGCAAAACATAGTCAAGAAC+TGG | - | chr8_4:4723370-4723389 | Msa1308440:CDS | 35.0% | |
| TCTTTCTTCTTCTTTGCTCT+TGG | - | chr8_4:4723493-4723512 | Msa1308440:CDS | 35.0% | |
| TTTATATGGAAGCGATTCAG+GGG | + | chr8_4:4723548-4723567 | None:intergenic | 35.0% | |
| CTTTATATGGAAGCGATTCA+GGG | + | chr8_4:4723549-4723568 | None:intergenic | 35.0% | |
| TCTTTATATGGAAGCGATTC+AGG | + | chr8_4:4723550-4723569 | None:intergenic | 35.0% | |
| GTTTCATCCAAGATTACCTA+AGG | + | chr8_4:4723707-4723726 | None:intergenic | 35.0% | |
| TCTGGTTGGCATATAAAGAA+AGG | - | chr8_4:4723735-4723754 | Msa1308440:CDS | 35.0% | |
| CTGGTTGGCATATAAAGAAA+GGG | - | chr8_4:4723736-4723755 | Msa1308440:CDS | 35.0% | |
| ! | CATCACTGATTGTATGATAG+TGG | + | chr8_4:4724150-4724169 | None:intergenic | 35.0% |
| CACTATCATACAATCAGTGA+TGG | - | chr8_4:4724148-4724167 | Msa1308440:CDS | 35.0% | |
| ! | TCTCTTGTGAAGTACTAGAT+TGG | + | chr8_4:4724225-4724244 | None:intergenic | 35.0% |
| AAATGCAACAACATCAAAGG+AGG | + | chr8_4:4724256-4724275 | None:intergenic | 35.0% | |
| TTGCATTATGATCTCTGCTT+AGG | - | chr8_4:4724369-4724388 | Msa1308440:CDS | 35.0% | |
| GCGTCAAATTTGAATGAGTT+TGG | - | chr8_4:4724396-4724415 | Msa1308440:CDS | 35.0% | |
| !! | AGTGATTGGTTTGGCTATTA+AGG | + | chr8_4:4724519-4724538 | None:intergenic | 35.0% |
| AAATGAACTACTGGAGTGAT+TGG | + | chr8_4:4724533-4724552 | None:intergenic | 35.0% | |
| !! | ATTTGGGACATGATTTTGGA+GGG | + | chr8_4:4724860-4724879 | None:intergenic | 35.0% |
| !! | TATTTGGGACATGATTTTGG+AGG | + | chr8_4:4724861-4724880 | None:intergenic | 35.0% |
| !! | CCGGTTTTGTGCTTATATTT+GGG | + | chr8_4:4724876-4724895 | None:intergenic | 35.0% |
| CCCAAATATAAGCACAAAAC+CGG | - | chr8_4:4724873-4724892 | Msa1308440:intron | 35.0% | |
| GAGCAACCCTTTATATGAAT+GGG | + | chr8_4:4724954-4724973 | None:intergenic | 35.0% | |
| AGAGCAACCCTTTATATGAA+TGG | + | chr8_4:4724955-4724974 | None:intergenic | 35.0% | |
| GTCTAATGTCCAACTTATGT+TGG | - | chr8_4:4725119-4725138 | Msa1308440:intron | 35.0% | |
| !!! | GTGTTTTGTTTGGTACATAG+TGG | + | chr8_4:4725338-4725357 | None:intergenic | 35.0% |
| !! | GCTGTTTTCTGTGTTTTGTT+TGG | + | chr8_4:4725348-4725367 | None:intergenic | 35.0% |
| ! | TGTGTGACTTTGTTTGTGTA+GGG | + | chr8_4:4725376-4725395 | None:intergenic | 35.0% |
| ! | TGTGTGACTTTGTTTGTGTA+GGG | + | chr8_4:4725376-4725395 | None:intergenic | 35.0% |
| !! | CAGACTTCCAATTTGTTGAT+AGG | - | chr8_4:4725595-4725614 | Msa1308440:intron | 35.0% |
| TAATGCGTAACTTATGCTGT+TGG | + | chr8_4:4725753-4725772 | None:intergenic | 35.0% | |
| AGAAAACGAGAAAATGAGAG+AGG | + | chr8_4:4725792-4725811 | None:intergenic | 35.0% | |
| ATATCAATCTTTACAGTGGG+AGG | + | chr8_4:4725918-4725937 | None:intergenic | 35.0% | |
| ATGCATAAACACAAACCTAG+TGG | - | chr8_4:4726488-4726507 | Msa1308440:intron | 35.0% | |
| ACAGTGATGAAAATAGTTGC+TGG | + | chr8_4:4726520-4726539 | None:intergenic | 35.0% | |
| !! | TAGCTGTTTTGTCAGTATTG+GGG | - | chr8_4:4727106-4727125 | Msa1308440:intron | 35.0% |
| ATCAGAGAGAGTAACAAATG+AGG | + | chr8_4:4727207-4727226 | None:intergenic | 35.0% | |
| TTTGTGAATTTGGATTTCCG+TGG | - | chr8_4:4727379-4727398 | Msa1308440:intron | 35.0% | |
| TTGTGAATTTGGATTTCCGT+GGG | - | chr8_4:4727380-4727399 | Msa1308440:intron | 35.0% | |
| ! | TTATCGATGATGAGGTTGAT+AGG | - | chr8_4:4727568-4727587 | Msa1308440:intron | 35.0% |
| ! | ATAGGTTGCTTTCTGATTTG+AGG | - | chr8_4:4727586-4727605 | Msa1308440:intron | 35.0% |
| !!! | TGATTTGAGGTTGGTGTTTT+TGG | - | chr8_4:4727599-4727618 | Msa1308440:intron | 35.0% |
| ATGATTTGAGTGATGGTAAG+GGG | - | chr8_4:4727697-4727716 | Msa1308440:intron | 35.0% | |
| ! | AGAAGAGGAGTTGATTGAAA+AGG | - | chr8_4:4727770-4727789 | Msa1308440:intron | 35.0% |
| TTGAAGCTGTTGAAACACAT+TGG | - | chr8_4:4727897-4727916 | Msa1308440:intron | 35.0% | |
| ! | CACATTGGAATGGATTCTAA+AGG | - | chr8_4:4727912-4727931 | Msa1308440:intron | 35.0% |
| TGCGTTGGGAACAATAAAAA+TGG | - | chr8_4:4727965-4727984 | Msa1308440:intron | 35.0% | |
| ! | TGGGAATCATAAGCTTTTAG+TGG | - | chr8_4:4728052-4728071 | Msa1308440:intron | 35.0% |
| CCTTTATCATGCTCTTCATT+GGG | + | chr8_4:4728095-4728114 | None:intergenic | 35.0% | |
| ACCTTTATCATGCTCTTCAT+TGG | + | chr8_4:4728096-4728115 | None:intergenic | 35.0% | |
| TTAAGGCAATTCATGATGCA+AGG | - | chr8_4:4728129-4728148 | Msa1308440:intron | 35.0% | |
| !! | TTCATGCATACTATTGGCTT+TGG | - | chr8_4:4728182-4728201 | Msa1308440:intron | 35.0% |
| !!! | GGATTTTGGCTTAGAATCTT+TGG | + | chr8_4:4728338-4728357 | None:intergenic | 35.0% |
| !!! | TCTCTAGAGTTTCAGGATTT+TGG | + | chr8_4:4728352-4728371 | None:intergenic | 35.0% |
| !! | AAAAGTGTCCAAAAGCTCTA+AGG | + | chr8_4:4728411-4728430 | None:intergenic | 35.0% |
| AAACTATTCCATTGCAAGCA+TGG | - | chr8_4:4728520-4728539 | Msa1308440:intron | 35.0% | |
| !! | CCGGGTGAATTTTAAAAACA+CGG | + | chr8_4:4728574-4728593 | None:intergenic | 35.0% |
| !!! | CCGTGTTTTTAAAATTCACC+CGG | - | chr8_4:4728571-4728590 | Msa1308440:intron | 35.0% |
| TACTCATCTTTCCCTTTCTC+TGG | - | chr8_4:4723464-4723483 | Msa1308440:CDS | 40.0% | |
| GAGCAAAGAAGAAGAAAGAG+AGG | + | chr8_4:4723492-4723511 | None:intergenic | 40.0% | |
| ! | CAAAATGGCGGCTGAATTTT+TGG | + | chr8_4:4723575-4723594 | None:intergenic | 40.0% |
| ATTCGCGAAGAAGGTCAAAA+TGG | + | chr8_4:4723590-4723609 | None:intergenic | 40.0% | |
| CAACTTGCCTTAGGTAATCT+TGG | - | chr8_4:4723697-4723716 | Msa1308440:CDS | 40.0% | |
| GTAATAGTAACGAGTGACTG+AGG | - | chr8_4:4723832-4723851 | Msa1308440:CDS | 40.0% | |
| ! | GGTGATGATGAGAAGTGAAA+GGG | + | chr8_4:4723948-4723967 | None:intergenic | 40.0% |
| ! | TGGTGATGATGAGAAGTGAA+AGG | + | chr8_4:4723949-4723968 | None:intergenic | 40.0% |
| !!! | AAGCTCTTTTTTAGAGGAGG+TGG | + | chr8_4:4723969-4723988 | None:intergenic | 40.0% |
| ! | ACCTCCTCTAAAAAAGAGCT+TGG | - | chr8_4:4723968-4723987 | Msa1308440:CDS | 40.0% |
| !!! | ACCAAGCTCTTTTTTAGAGG+AGG | + | chr8_4:4723972-4723991 | None:intergenic | 40.0% |
| TGAAGAGCTACAAAGCTCTT+TGG | + | chr8_4:4724043-4724062 | None:intergenic | 40.0% | |
| TCAACCTGATCACATTGTTG+TGG | + | chr8_4:4724103-4724122 | None:intergenic | 40.0% | |
| !! | ACAATGTGATCAGGTTGACT+TGG | - | chr8_4:4724105-4724124 | Msa1308440:CDS | 40.0% |
| GGACAATACTCATGTGAAAC+AGG | - | chr8_4:4724169-4724188 | Msa1308440:CDS | 40.0% | |
| AAGTACTAGATTGGTGGAGA+TGG | + | chr8_4:4724216-4724235 | None:intergenic | 40.0% | |
| ! | CTTGTGAAGTACTAGATTGG+TGG | + | chr8_4:4724222-4724241 | None:intergenic | 40.0% |
| GCAAGTTCAGAAACCAGAAA+TGG | + | chr8_4:4724459-4724478 | None:intergenic | 40.0% | |
| ! | AACTACTGGAGTGATTGGTT+TGG | + | chr8_4:4724528-4724547 | None:intergenic | 40.0% |
| ACCTGTCTCTCTGATGATTA+TGG | - | chr8_4:4724667-4724686 | Msa1308440:CDS | 40.0% | |
| ACCATAATCATCAGAGAGAC+AGG | + | chr8_4:4724671-4724690 | None:intergenic | 40.0% | |
| !! | GCCGGTTTTGTGCTTATATT+TGG | + | chr8_4:4724877-4724896 | None:intergenic | 40.0% |
| CTAAAGTCAGACATACTTGC+CGG | + | chr8_4:4724895-4724914 | None:intergenic | 40.0% | |
| TGTCTGACACCAACATAAGT+TGG | + | chr8_4:4725131-4725150 | None:intergenic | 40.0% | |
| AACTTAAGCACTTGTGTCGT+TGG | + | chr8_4:4725154-4725173 | None:intergenic | 40.0% | |
| TGGAGCACAAAGCAAATCAT+AGG | + | chr8_4:4725260-4725279 | None:intergenic | 40.0% | |
| ! | GTGTGACTTTGTTTGTGTAG+GGG | + | chr8_4:4725375-4725394 | None:intergenic | 40.0% |
| ! | GTGTGTGACTTTGTTTGTGT+AGG | + | chr8_4:4725377-4725396 | None:intergenic | 40.0% |
| ! | GTGTGACTTTGTTTGTGTAG+GGG | + | chr8_4:4725375-4725394 | None:intergenic | 40.0% |
| ! | GTGTGTGACTTTGTTTGTGT+AGG | + | chr8_4:4725377-4725396 | None:intergenic | 40.0% |
| ATTCTGGATCTGTGTGTTAC+TGG | + | chr8_4:4725444-4725463 | None:intergenic | 40.0% | |
| !! | ACGTCTTCGCTTTTGTATTC+TGG | + | chr8_4:4725460-4725479 | None:intergenic | 40.0% |
| ATCGCTTAAAGCAACCTTCA+GGG | - | chr8_4:4725481-4725500 | Msa1308440:intron | 40.0% | |
| GAATGGAATTGTTACCCTGA+AGG | + | chr8_4:4725498-4725517 | None:intergenic | 40.0% | |
| AACGAGAAAATGAGAGAGGT+GGG | + | chr8_4:4725788-4725807 | None:intergenic | 40.0% | |
| AAACGAGAAAATGAGAGAGG+TGG | + | chr8_4:4725789-4725808 | None:intergenic | 40.0% | |
| AGAGAAGGAGAAGAAGAAGA+TGG | + | chr8_4:4725837-4725856 | None:intergenic | 40.0% | |
| GCTACAAAGAAAGGAAGAGA+AGG | + | chr8_4:4725852-4725871 | None:intergenic | 40.0% | |
| ! | GGCTCGGAAAACAATTTTGA+GGG | + | chr8_4:4725885-4725904 | None:intergenic | 40.0% |
| !! | TGGCTCGGAAAACAATTTTG+AGG | + | chr8_4:4725886-4725905 | None:intergenic | 40.0% |
| CATCTGACAAGCACACAAAT+GGG | + | chr8_4:4726221-4726240 | None:intergenic | 40.0% | |
| TCATCTGACAAGCACACAAA+TGG | + | chr8_4:4726222-4726241 | None:intergenic | 40.0% | |
| TTTAAAGGAACGTTGCCAAG+AGG | + | chr8_4:4726248-4726267 | None:intergenic | 40.0% | |
| AGAACTCATACACACACATG+GGG | + | chr8_4:4726390-4726409 | None:intergenic | 40.0% | |
| GAGAACTCATACACACACAT+GGG | + | chr8_4:4726391-4726410 | None:intergenic | 40.0% | |
| TGAGAACTCATACACACACA+TGG | + | chr8_4:4726392-4726411 | None:intergenic | 40.0% | |
| !! | AGCTGTTTTGTCAGTATTGG+GGG | - | chr8_4:4727107-4727126 | Msa1308440:intron | 40.0% |
| GCTTGTGTGCTTTGTGAATT+TGG | - | chr8_4:4727369-4727388 | Msa1308440:intron | 40.0% | |
| ATCATACCAAGCTTATCCCA+CGG | + | chr8_4:4727399-4727418 | None:intergenic | 40.0% | |
| GGTATGATTTATACGGAGAG+TGG | - | chr8_4:4727411-4727430 | Msa1308440:intron | 40.0% | |
| !!! | CGGAGAGTGGTTTTATGTTT+AGG | - | chr8_4:4727424-4727443 | Msa1308440:intron | 40.0% |
| !! | ATGGTTCTGAGATAAAGGGT+AGG | - | chr8_4:4727451-4727470 | Msa1308440:intron | 40.0% |
| ! | GTTGCTTTCTGATTTGAGGT+TGG | - | chr8_4:4727590-4727609 | Msa1308440:intron | 40.0% |
| TTGAAGGGAATGTGGATGTT+TGG | - | chr8_4:4727643-4727662 | Msa1308440:intron | 40.0% | |
| AGATAGGTGAACTCATTGGA+AGG | - | chr8_4:4727721-4727740 | Msa1308440:intron | 40.0% | |
| GATTCTTGAGTATGGAGAAG+AGG | - | chr8_4:4727755-4727774 | Msa1308440:intron | 40.0% | |
| ! | TTGTAGATTCAGTGTCGAGA+AGG | - | chr8_4:4727803-4727822 | Msa1308440:intron | 40.0% |
| ! | ATAGCTCGGTTGATTCTACA+AGG | - | chr8_4:4727831-4727850 | Msa1308440:intron | 40.0% |
| ! | TCGGTTGATTCTACAAGGTT+CGG | - | chr8_4:4727836-4727855 | Msa1308440:intron | 40.0% |
| GGAGTTGTTGAGTCTCAATT+TGG | - | chr8_4:4727857-4727876 | Msa1308440:intron | 40.0% | |
| GCTGTTGAAACACATTGGAA+TGG | - | chr8_4:4727902-4727921 | Msa1308440:intron | 40.0% | |
| ! | GGAATGGATTCTAAAGGTCT+TGG | - | chr8_4:4727918-4727937 | Msa1308440:intron | 40.0% |
| AAGAACTATGCTCATGCGTT+GGG | - | chr8_4:4727951-4727970 | Msa1308440:intron | 40.0% | |
| GAATCTTCCCAATGTGATGA+GGG | - | chr8_4:4727989-4728008 | Msa1308440:intron | 40.0% | |
| ! | CCCAATGAAGAGCATGATAA+AGG | - | chr8_4:4728092-4728111 | Msa1308440:intron | 40.0% |
| ! | AGAGCTTTTGGACACTTTTC+CGG | - | chr8_4:4728412-4728431 | Msa1308440:intron | 40.0% |
| ATCTGAACCTCGGCTTAATT+CGG | + | chr8_4:4728463-4728482 | None:intergenic | 40.0% | |
| CACATATGGAATCTGAACCT+CGG | + | chr8_4:4728473-4728492 | None:intergenic | 40.0% | |
| GAGGTTCAGATTCCATATGT+GGG | - | chr8_4:4728472-4728491 | Msa1308440:intron | 40.0% | |
| !!! | GCTTTTCTAAAGCCCACATA+TGG | + | chr8_4:4728487-4728506 | None:intergenic | 40.0% |
| !! | ACTAGTGACAAGGGTTTTGT+TGG | - | chr8_4:4728548-4728567 | Msa1308440:intron | 40.0% |
| AAGCACAACATGTGCCACAA+AGG | - | chr8_4:4723345-4723364 | Msa1308440:CDS | 45.0% | |
| AAAGAGAGGCTCCAGAGAAA+GGG | + | chr8_4:4723478-4723497 | None:intergenic | 45.0% | |
| ACAGACATCATTCGCGAAGA+AGG | + | chr8_4:4723599-4723618 | None:intergenic | 45.0% | |
| TCTTCGCGAATGATGTCTGT+TGG | - | chr8_4:4723599-4723618 | Msa1308440:CDS | 45.0% | |
| TACCTAAGGCAAGTTGCTTC+CGG | + | chr8_4:4723693-4723712 | None:intergenic | 45.0% | |
| TGGATGAAACTTGAGCTCTC+TGG | - | chr8_4:4723717-4723736 | Msa1308440:CDS | 45.0% | |
| TGAAACTTGAGCTCTCTGGT+TGG | - | chr8_4:4723721-4723740 | Msa1308440:CDS | 45.0% | |
| !! | AAAGAAAGGGCGTCCCTTTA+TGG | - | chr8_4:4723749-4723768 | Msa1308440:CDS | 45.0% |
| AGGAGAGAGAGCTCCATAAA+GGG | + | chr8_4:4723765-4723784 | None:intergenic | 45.0% | |
| AAGGAGAGAGAGCTCCATAA+AGG | + | chr8_4:4723766-4723785 | None:intergenic | 45.0% | |
| TAGTAACGAGTGACTGAGGT+TGG | - | chr8_4:4723836-4723855 | Msa1308440:CDS | 45.0% | |
| ATGGCCACAACAATGTGATC+AGG | - | chr8_4:4724096-4724115 | Msa1308440:CDS | 45.0% | |
| TACTAGATTGGTGGAGATGG+AGG | + | chr8_4:4724213-4724232 | None:intergenic | 45.0% | |
| !! | GACATGATTTTGGAGGGTAG+GGG | + | chr8_4:4724854-4724873 | None:intergenic | 45.0% |
| !! | GGACATGATTTTGGAGGGTA+GGG | + | chr8_4:4724855-4724874 | None:intergenic | 45.0% |
| CATCGCTTAAAGCAACCTTC+AGG | - | chr8_4:4725480-4725499 | Msa1308440:intron | 45.0% | |
| GAAGATGGAGAGGGAAACAA+AGG | + | chr8_4:4725822-4725841 | None:intergenic | 45.0% | |
| GGAGAAGAAGAAGATGGAGA+GGG | + | chr8_4:4725831-4725850 | None:intergenic | 45.0% | |
| AGGAGAAGAAGAAGATGGAG+AGG | + | chr8_4:4725832-4725851 | None:intergenic | 45.0% | |
| ! | TGTTTTCCGAGCCAAGATCA+TGG | - | chr8_4:4725892-4725911 | Msa1308440:intron | 45.0% |
| CTTGTCAGATGATCTCCTCT+TGG | - | chr8_4:4726230-4726249 | Msa1308440:intron | 45.0% | |
| AGTTGCTGGTACTTACCACT+AGG | + | chr8_4:4726506-4726525 | None:intergenic | 45.0% | |
| ! | GGACGTTTTCTTAATCTCCC+AGG | + | chr8_4:4726624-4726643 | None:intergenic | 45.0% |
| CAAGCAATTGGCATAGGCTA+AGG | + | chr8_4:4726645-4726664 | None:intergenic | 45.0% | |
| !! | GCTGTTTTGTCAGTATTGGG+GGG | - | chr8_4:4727108-4727127 | Msa1308440:intron | 45.0% |
| !!! | TCCTTTTGTTTTTGGTGCCG+AGG | - | chr8_4:4727536-4727555 | Msa1308440:intron | 45.0% |
| TCCTCGGCACCAAAAACAAA+AGG | + | chr8_4:4727540-4727559 | None:intergenic | 45.0% | |
| !!! | TTTGTTTTTGGTGCCGAGGA+AGG | - | chr8_4:4727540-4727559 | Msa1308440:intron | 45.0% |
| !!! | TTGTTTTTGGTGCCGAGGAA+GGG | - | chr8_4:4727541-4727560 | Msa1308440:intron | 45.0% |
| ATCGATAAATCCCCCTTCCT+CGG | + | chr8_4:4727556-4727575 | None:intergenic | 45.0% | |
| AGGGGGATTTATCGATGATG+AGG | - | chr8_4:4727560-4727579 | Msa1308440:intron | 45.0% | |
| ! | ATTTGGGAGGGTGTGTTGAA+GGG | - | chr8_4:4727628-4727647 | Msa1308440:intron | 45.0% |
| AGTGATGGTAAGGGGAAGAT+AGG | - | chr8_4:4727705-4727724 | Msa1308440:intron | 45.0% | |
| GGGAAGATAGGTGAACTCAT+TGG | - | chr8_4:4727717-4727736 | Msa1308440:intron | 45.0% | |
| ! | TAGATTCAGTGTCGAGAAGG+AGG | - | chr8_4:4727806-4727825 | Msa1308440:intron | 45.0% |
| TCGAGAAGGAGGAAATAGCT+CGG | - | chr8_4:4727817-4727836 | Msa1308440:intron | 45.0% | |
| GAAGAACTATGCTCATGCGT+TGG | - | chr8_4:4727950-4727969 | Msa1308440:intron | 45.0% | |
| CGAATCTTCCCAATGTGATG+AGG | - | chr8_4:4727988-4728007 | Msa1308440:intron | 45.0% | |
| AGTGTCCCATATCCTGACAT+AGG | + | chr8_4:4728388-4728407 | None:intergenic | 45.0% | |
| TAGAGAACCGAATTAAGCCG+AGG | - | chr8_4:4728453-4728472 | Msa1308440:intron | 45.0% | |
| CGAGGTTCAGATTCCATATG+TGG | - | chr8_4:4728471-4728490 | Msa1308440:intron | 45.0% | |
| ATGGTTGCGACTAGTGACAA+GGG | - | chr8_4:4728539-4728558 | Msa1308440:intron | 45.0% | |
| !!! | AACCAATGTTTTGGAGCAGC+CGG | + | chr8_4:4728593-4728612 | None:intergenic | 45.0% |
| GAAAGAGAGGCTCCAGAGAA+AGG | + | chr8_4:4723479-4723498 | None:intergenic | 50.0% | |
| ! | GTGGCTACTGGCTACTGATA+TGG | + | chr8_4:4723520-4723539 | None:intergenic | 50.0% |
| ATATGGAAGCGATTCAGGGG+AGG | + | chr8_4:4723545-4723564 | None:intergenic | 50.0% | |
| CGCGAAGAAGGTCAAAATGG+CGG | + | chr8_4:4723587-4723606 | None:intergenic | 50.0% | |
| TACCGGAAGCAACTTGCCTT+AGG | - | chr8_4:4723688-4723707 | Msa1308440:CDS | 50.0% | |
| !! | GGGACATGATTTTGGAGGGT+AGG | + | chr8_4:4724856-4724875 | None:intergenic | 50.0% |
| ATGTGTTGCATGTACGCTGC+TGG | - | chr8_4:4725232-4725251 | Msa1308440:intron | 50.0% | |
| ! | ACTTTGTTTGTGTAGGGGCG+TGG | + | chr8_4:4725370-4725389 | None:intergenic | 50.0% |
| CACCAGTAACACACAGATCC+AGG | - | chr8_4:4725394-4725413 | Msa1308440:intron | 50.0% | |
| ! | ACTTTGTTTGTGTAGGGGCC+TGG | + | chr8_4:4725415-4725434 | None:intergenic | 50.0% |
| ! | CGTGAAACTCACATGGGCTA+TGG | + | chr8_4:4725995-4726014 | None:intergenic | 50.0% |
| TGATGCACGAGGTCTTACTG+TGG | + | chr8_4:4726026-4726045 | None:intergenic | 50.0% | |
| CTCTAAGTGCTTGATGCACG+AGG | + | chr8_4:4726037-4726056 | None:intergenic | 50.0% | |
| CTCGTGCATCAAGCACTTAG+AGG | - | chr8_4:4726035-4726054 | Msa1308440:intron | 50.0% | |
| AGCAGTGAACTTGTGCACCT+GGG | - | chr8_4:4726604-4726623 | Msa1308440:intron | 50.0% | |
| AGGCAGCAAGCAATTGGCAT+AGG | + | chr8_4:4726651-4726670 | None:intergenic | 50.0% | |
| AGAGCAAGGCAGCAAGCAAT+TGG | + | chr8_4:4726657-4726676 | None:intergenic | 50.0% | |
| GGATTTCCGTGGGATAAGCT+TGG | - | chr8_4:4727390-4727409 | Msa1308440:intron | 50.0% | |
| !!! | TGTTTTTGGTGCCGAGGAAG+GGG | - | chr8_4:4727542-4727561 | Msa1308440:intron | 50.0% |
| ! | GATTTGGGAGGGTGTGTTGA+AGG | - | chr8_4:4727627-4727646 | Msa1308440:intron | 50.0% |
| AGGGTGTGTTGAAGGGAATG+TGG | - | chr8_4:4727635-4727654 | Msa1308440:intron | 50.0% | |
| TCCCAATGTGATGAGGGCTA+TGG | - | chr8_4:4727995-4728014 | Msa1308440:intron | 50.0% | |
| CCCATAGCCCTCATCACATT+GGG | + | chr8_4:4727999-4728018 | None:intergenic | 50.0% | |
| CCCAATGTGATGAGGGCTAT+GGG | - | chr8_4:4727996-4728015 | Msa1308440:intron | 50.0% | |
| ACCCATAGCCCTCATCACAT+TGG | + | chr8_4:4728000-4728019 | None:intergenic | 50.0% | |
| GGGCTATGGGTTTACGTGAA+TGG | - | chr8_4:4728009-4728028 | Msa1308440:intron | 50.0% | |
| ! | GGGACACTCCTTAGAGCTTT+TGG | - | chr8_4:4728400-4728419 | Msa1308440:intron | 50.0% |
| AGTCGCAACCATGCTTGCAA+TGG | + | chr8_4:4728531-4728550 | None:intergenic | 50.0% | |
| CATGGTTGCGACTAGTGACA+AGG | - | chr8_4:4728538-4728557 | Msa1308440:intron | 50.0% | |
| !!! | ACCAATGTTTTGGAGCAGCC+GGG | + | chr8_4:4728592-4728611 | None:intergenic | 50.0% |
| AAGCGATTCAGGGGAGGATG+TGG | + | chr8_4:4723539-4723558 | None:intergenic | 55.0% | |
| GGCCTGGATCTGTGTGTTAC+TGG | + | chr8_4:4725399-4725418 | None:intergenic | 55.0% | |
| ACAGTGGGAGGCCATGATCT+TGG | + | chr8_4:4725906-4725925 | None:intergenic | 55.0% | |
| GCCACGCGTGAAACTCACAT+GGG | + | chr8_4:4726001-4726020 | None:intergenic | 55.0% | |
| AGCCACGCGTGAAACTCACA+TGG | + | chr8_4:4726002-4726021 | None:intergenic | 55.0% | |
| CAGGTGCACAAGTTCACTGC+TGG | + | chr8_4:4726605-4726624 | None:intergenic | 55.0% | |
| CAGCAGTGAACTTGTGCACC+TGG | - | chr8_4:4726603-4726622 | Msa1308440:intron | 55.0% | |
| !!! | GTTTTTGGTGCCGAGGAAGG+GGG | - | chr8_4:4727543-4727562 | Msa1308440:intron | 55.0% |
| ACCCGGCTGCTCCAAAACAT+TGG | - | chr8_4:4728588-4728607 | Msa1308440:intron | 55.0% | |
| TCAGGGGAGGATGTGGCTAC+TGG | + | chr8_4:4723532-4723551 | None:intergenic | 60.0% | |
| GGGAGGCCATGATCTTGGCT+CGG | + | chr8_4:4725901-4725920 | None:intergenic | 60.0% | |
| GCCCATGTGAGTTTCACGCG+TGG | - | chr8_4:4725997-4726016 | Msa1308440:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 4723329 | 4728649 | 4723329 | ID=Msa1308440;Name=Msa1308440 |
| chr8_4 | mRNA | 4723329 | 4728649 | 4723329 | ID=Msa1308440-mRNA-1;Parent=Msa1308440;Name=Msa1308440-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|0.5|1|1|2|0|480 |
| chr8_4 | exon | 4728612 | 4728649 | 4728612 | ID=Msa1308440-mRNA-1:exon:1447;Parent=Msa1308440-mRNA-1 |
| chr8_4 | exon | 4723329 | 4724733 | 4723329 | ID=Msa1308440-mRNA-1:exon:1446;Parent=Msa1308440-mRNA-1 |
| chr8_4 | CDS | 4728612 | 4728649 | 4728612 | ID=Msa1308440-mRNA-1:cds;Parent=Msa1308440-mRNA-1 |
| chr8_4 | CDS | 4723329 | 4724733 | 4723329 | ID=Msa1308440-mRNA-1:cds;Parent=Msa1308440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
