Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1310680 | XP_013443993.1 | 99.387 | 326 | 0 | 1 | 1 | 326 | 1 | 324 | 0.0 | 643 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1310680 | sp|Q15428|SF3A2_HUMAN | 69.811 | 212 | 64 | 0 | 6 | 217 | 8 | 219 | 1.04e-92 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1310680 | A0A072TWV3 | 99.387 | 326 | 0 | 1 | 1 | 326 | 1 | 324 | 0.0 | 643 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1261250 | Msa1310680 | -0.803094 | 4.107207e-49 | -8.615850e-47 |
| Msa0367980 | Msa1310680 | 0.845502 | 3.901016e-59 | -8.615850e-47 |
| Msa0531970 | Msa1310680 | 0.800829 | 1.199191e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1310680 | MtrunA17_Chr8g0337441 | 99.387 | 326 | 0 | 1 | 1 | 326 | 1 | 324 | 0.0 | 643 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1310680 | AT2G32600.1 | 85.153 | 229 | 33 | 1 | 1 | 229 | 1 | 228 | 6.16e-137 | 389 |
Find 135 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTGTGGTTTGGTTGCCTC+TGG | 0.189969 | 8_4:+7318280 | None:intergenic |
| GGTAGTGGAGCTTGTGGTGG+TGG | 0.222430 | 8_4:+7318199 | None:intergenic |
| CTCCTTTACCTTGATATAGA+TGG | 0.237440 | 8_4:-7317744 | Msa1310680:three_prime_UTR |
| GCCAGTAACTGTTTGATTAC+AGG | 0.240484 | 8_4:-7317706 | Msa1310680:three_prime_UTR |
| GAGATGATTGCGCATGAAAT+AGG | 0.265040 | 8_4:+7320986 | None:intergenic |
| TCCTGTAATCAAACAGTTAC+TGG | 0.277371 | 8_4:+7317705 | None:intergenic |
| GATGCAATGAACAGGCAATT+TGG | 0.289926 | 8_4:+7317857 | None:intergenic |
| GTGGCGGCTCCGCCACTTCC+TGG | 0.292360 | 8_4:+7321086 | None:intergenic |
| ATGCAATGAACAGGCAATTT+GGG | 0.298212 | 8_4:+7317858 | None:intergenic |
| TGCTACTATCTCTTTGAAAC+TGG | 0.316413 | 8_4:+7321180 | None:intergenic |
| TATCTCTTTGAAACTGGAAT+TGG | 0.321267 | 8_4:+7321186 | None:intergenic |
| AGAGATCTTTGCTTGGTATC+AGG | 0.324169 | 8_4:+7320647 | None:intergenic |
| GGATGCACCTTTATCCTCTA+AGG | 0.324432 | 8_4:-7317899 | Msa1310680:three_prime_UTR |
| TGCCCTAGCTCTGCATTTGT+TGG | 0.330972 | 8_4:+7317960 | None:intergenic |
| AACGAGAACAAACCTGAAAA+AGG | 0.332371 | 8_4:+7320624 | None:intergenic |
| AGCAGCACGTTTAGCGAGAT+TGG | 0.337514 | 8_4:+7320878 | None:intergenic |
| TTATGAAACAATTTCTTTCA+AGG | 0.340909 | 8_4:-7318668 | Msa1310680:intron |
| GCTGTGGTTTGGTTGCCTCT+GGG | 0.347044 | 8_4:+7318281 | None:intergenic |
| ACTGTGAACATCTTTGAATC+TGG | 0.349285 | 8_4:+7318480 | None:intergenic |
| CCTTGTGGAGGTGGCATTGA+TGG | 0.350354 | 8_4:+7317992 | None:intergenic |
| GTAGTGGAGCTTGTGGTGGT+GGG | 0.364814 | 8_4:+7318200 | None:intergenic |
| GCTACCTCCCGGCGCACCTA+TGG | 0.367211 | 8_4:-7318152 | Msa1310680:CDS |
| TTGAAAGAAATTGTTTCATA+AGG | 0.372951 | 8_4:+7318670 | None:intergenic |
| ATGTTAACCTTCCTCTTATG+AGG | 0.379584 | 8_4:+7320822 | None:intergenic |
| CCTTGTGGAGGTGGTGGTGG+TGG | 0.384448 | 8_4:+7318175 | None:intergenic |
| AGGCTGAGTAGGAGCATCTT+TGG | 0.385883 | 8_4:+7320848 | None:intergenic |
| AGCCCTTGTGGAGGTGGTGG+TGG | 0.387371 | 8_4:+7318172 | None:intergenic |
| CCACCTGCCTCTGCACCTAA+TGG | 0.401178 | 8_4:-7318259 | Msa1310680:CDS |
| GGGGCTGGCGGTGGAAGAGG+TGG | 0.402459 | 8_4:+7318031 | None:intergenic |
| GTTACGGTTGCAGTTAAGAT+TGG | 0.404086 | 8_4:-7320704 | Msa1310680:intron |
| TGTGGAGGTGGTGGTGGTGG+TGG | 0.404383 | 8_4:+7318178 | None:intergenic |
| GGTAGCCCTTGTGGAGGTGG+TGG | 0.404676 | 8_4:+7318169 | None:intergenic |
| GACTTATCAATTTCTGTGCT+TGG | 0.408241 | 8_4:+7318531 | None:intergenic |
| CTGTGGTTTGGTTGCCTCTG+GGG | 0.413045 | 8_4:+7318282 | None:intergenic |
| AGTGGAGCTTGTGGTGGTGG+GGG | 0.417612 | 8_4:+7318202 | None:intergenic |
| AGATGATTGCGCATGAAATA+GGG | 0.419841 | 8_4:+7320987 | None:intergenic |
| AAGGTTAACATGAAGAAATC+TGG | 0.420128 | 8_4:-7320810 | Msa1310680:intron |
| TAGCTCTGCATTTGTTGGCC+TGG | 0.421194 | 8_4:+7317965 | None:intergenic |
| AACAACAATGGACAGAGAAT+GGG | 0.425908 | 8_4:-7321117 | Msa1310680:exon |
| GCCCCTCCACCTCCAATGTC+AGG | 0.429502 | 8_4:-7318115 | Msa1310680:CDS |
| CAGTTAAGATTGGGAGGCCT+GGG | 0.429906 | 8_4:-7320694 | Msa1310680:CDS |
| TGTGGTTTGGTTGCCTCTGG+GGG | 0.431042 | 8_4:+7318283 | None:intergenic |
| CCAGGTGCTGTGGTGCCATT+AGG | 0.431539 | 8_4:+7318244 | None:intergenic |
| GGAGGTAGCCCTTGTGGAGG+TGG | 0.439056 | 8_4:+7318166 | None:intergenic |
| CATTGATGTATCAAGTTGTC+TGG | 0.439794 | 8_4:-7317808 | Msa1310680:three_prime_UTR |
| TTAAAAGTGTACCTGCTCAT+AGG | 0.440818 | 8_4:+7318913 | None:intergenic |
| GCAGTTAAGATTGGGAGGCC+TGG | 0.440830 | 8_4:-7320695 | Msa1310680:intron |
| CAACAACAATGGACAGAGAA+TGG | 0.445279 | 8_4:-7321118 | Msa1310680:exon |
| TTACGGTTGCAGTTAAGATT+GGG | 0.446730 | 8_4:-7320703 | Msa1310680:intron |
| GGTGCAGAGGCAGGTGGCTG+TGG | 0.447431 | 8_4:+7318265 | None:intergenic |
| TCCTTTACCTTGATATAGAT+GGG | 0.448712 | 8_4:-7317743 | Msa1310680:three_prime_UTR |
| CAGCTGCAAACAATAGATAC+TGG | 0.457637 | 8_4:+7318695 | None:intergenic |
| AGAGGCAGGTGGCTGTGGTT+TGG | 0.459653 | 8_4:+7318270 | None:intergenic |
| ACCTTCCTCTTATGAGGCTG+AGG | 0.460424 | 8_4:+7320828 | None:intergenic |
| CTCAGCCTCAGCCTCATAAG+AGG | 0.465760 | 8_4:-7320833 | Msa1310680:CDS |
| AGGCCAACAAATGCAGAGCT+AGG | 0.470252 | 8_4:-7317963 | Msa1310680:exon |
| TTTGCGAGGTCTTCAATCTC+AGG | 0.471392 | 8_4:+7318959 | None:intergenic |
| TAGTGGAGCTTGTGGTGGTG+GGG | 0.472093 | 8_4:+7318201 | None:intergenic |
| CTACCTCCCGGCGCACCTAT+GGG | 0.475130 | 8_4:-7318151 | Msa1310680:CDS |
| ATTGCACCAGGTACAGATCT+AGG | 0.488177 | 8_4:+7318055 | None:intergenic |
| AATGCCACCACCACCTCCTA+TGG | 0.488452 | 8_4:-7318089 | Msa1310680:CDS |
| ATTGGAGGTGGAGGGGCCCG+TGG | 0.488633 | 8_4:+7318121 | None:intergenic |
| TCCTGACATTGGAGGTGGAG+GGG | 0.490414 | 8_4:+7318114 | None:intergenic |
| CTGTGAACATCTTTGAATCT+GGG | 0.493942 | 8_4:+7318481 | None:intergenic |
| TCCCATCTATATCAAGGTAA+AGG | 0.503953 | 8_4:+7317742 | None:intergenic |
| GGTGGTAGTGGAGCTTGTGG+TGG | 0.508280 | 8_4:+7318196 | None:intergenic |
| GGTGGTGGTAGTGGAGCTTG+TGG | 0.511018 | 8_4:+7318193 | None:intergenic |
| ATAGGCCTTGGTGGAACACC+AGG | 0.514817 | 8_4:+7318226 | None:intergenic |
| AGGATTTCCCATAGGTGCGC+CGG | 0.516220 | 8_4:+7318144 | None:intergenic |
| CCTGGAAAACCTTGTGGAGG+TGG | 0.518508 | 8_4:+7317983 | None:intergenic |
| GATGGAGGTCTAGTCCCAAT+GGG | 0.518889 | 8_4:+7318010 | None:intergenic |
| CGCTAAACGTGCTGCTCGTG+AGG | 0.522282 | 8_4:-7320871 | Msa1310680:CDS |
| GCAGCCATAGGAGGTGGTGG+TGG | 0.522582 | 8_4:+7318085 | None:intergenic |
| CGAGTCGTCGGAGTCGTTCA+CGG | 0.523440 | 8_4:+7321039 | None:intergenic |
| GGATTTCCCATAGGTGCGCC+GGG | 0.524617 | 8_4:+7318145 | None:intergenic |
| AGAGAATGGGGTTCAAAACC+AGG | 0.530659 | 8_4:-7321104 | Msa1310680:CDS |
| CCTAATGGCACCACAGCACC+TGG | 0.537047 | 8_4:-7318244 | Msa1310680:CDS |
| AACTACCTTGCTCATACTCA+AGG | 0.540961 | 8_4:-7320915 | Msa1310680:CDS |
| GGAAGAGGTGGCATTGCACC+AGG | 0.541752 | 8_4:+7318043 | None:intergenic |
| ATTTATGTCCTCCTATGAGC+AGG | 0.542578 | 8_4:-7318924 | Msa1310680:intron |
| GATCCTGACATTGGAGGTGG+AGG | 0.544166 | 8_4:+7318112 | None:intergenic |
| TGATGGAGGTCTAGTCCCAA+TGG | 0.544944 | 8_4:+7318009 | None:intergenic |
| TTTGCAGCCATAGGAGGTGG+TGG | 0.550310 | 8_4:+7318082 | None:intergenic |
| GTGCCATTAGGTGCAGAGGC+AGG | 0.551727 | 8_4:+7318256 | None:intergenic |
| CCACCACCACCACCTCCACA+AGG | 0.552336 | 8_4:-7318175 | Msa1310680:CDS |
| TTATGAGGCTGAGGCTGAGT+AGG | 0.552615 | 8_4:+7320837 | None:intergenic |
| TTTATTATTTATGTTGACCA+TGG | 0.557763 | 8_4:-7317783 | Msa1310680:three_prime_UTR |
| TGGTGGAACACCAGGTGCTG+TGG | 0.557787 | 8_4:+7318234 | None:intergenic |
| TATTGAGTGTTTAAAAGTTG+TGG | 0.558339 | 8_4:-7317924 | Msa1310680:three_prime_UTR |
| ACCTATGGGAAATCCTCCAC+GGG | 0.559129 | 8_4:-7318137 | Msa1310680:CDS |
| CCATTAGGTGCAGAGGCAGG+TGG | 0.565316 | 8_4:+7318259 | None:intergenic |
| CCACCTCCTATGGCTGCAAA+CGG | 0.566286 | 8_4:-7318079 | Msa1310680:CDS |
| CCTCCACAAGGGCTACCTCC+CGG | 0.569045 | 8_4:-7318163 | Msa1310680:CDS |
| TTGTTTCGAGAGCGAGTCGT+CGG | 0.569489 | 8_4:+7321027 | None:intergenic |
| ATCGATGTCTCGGCTTTGCG+AGG | 0.569553 | 8_4:+7318945 | None:intergenic |
| GGAGGTGGAGGGGCCCGTGG+AGG | 0.570915 | 8_4:+7318124 | None:intergenic |
| GGCCAACAAATGCAGAGCTA+GGG | 0.571723 | 8_4:-7317962 | Msa1310680:exon |
| CCGTTTGCAGCCATAGGAGG+TGG | 0.572311 | 8_4:+7318079 | None:intergenic |
| CACCTATGGGAAATCCTCCA+CGG | 0.572815 | 8_4:-7318138 | Msa1310680:CDS |
| GGCATTGATCCTGACATTGG+AGG | 0.577806 | 8_4:+7318106 | None:intergenic |
| GCTAAAACAAGTACATCCCT+AGG | 0.579138 | 8_4:-7317668 | None:intergenic |
| CGGTTGCAGTTAAGATTGGG+AGG | 0.579565 | 8_4:-7320700 | Msa1310680:intron |
| GGACCGTTTGCAGCCATAGG+AGG | 0.584580 | 8_4:+7318076 | None:intergenic |
| TGGGGTTCAAAACCAGGAAG+TGG | 0.584935 | 8_4:-7321098 | Msa1310680:CDS |
| CTAGGACCGTTTGCAGCCAT+AGG | 0.585425 | 8_4:+7318073 | None:intergenic |
| GGTGGCATTGATCCTGACAT+TGG | 0.586792 | 8_4:+7318103 | None:intergenic |
| GAGGACATAAATCGATGTCT+CGG | 0.588789 | 8_4:+7318935 | None:intergenic |
| ATCCTGACATTGGAGGTGGA+GGG | 0.597160 | 8_4:+7318113 | None:intergenic |
| TATTTCATGCGCAATCATCT+CGG | 0.597383 | 8_4:-7320984 | Msa1310680:CDS |
| GAGTGTTTAAAAGTTGTGGT+TGG | 0.598963 | 8_4:-7317920 | Msa1310680:three_prime_UTR |
| GCCTCAGCCTCATAAGAGGA+AGG | 0.605414 | 8_4:-7320829 | Msa1310680:CDS |
| TGTGGTGCCATTAGGTGCAG+AGG | 0.614977 | 8_4:+7318252 | None:intergenic |
| AAAGTGTACCTGCTCATAGG+AGG | 0.615464 | 8_4:+7318916 | None:intergenic |
| TGCTTAGTCACACGATACCC+AGG | 0.616244 | 8_4:+7320677 | None:intergenic |
| GTTTCCCTTGAGTATGAGCA+AGG | 0.618290 | 8_4:+7320910 | None:intergenic |
| ATTGATCCTGACATTGGAGG+TGG | 0.623232 | 8_4:+7318109 | None:intergenic |
| TGCAATGAACAGGCAATTTG+GGG | 0.625850 | 8_4:+7317859 | None:intergenic |
| GCCCGTGGAGGATTTCCCAT+AGG | 0.626149 | 8_4:+7318136 | None:intergenic |
| TGTTGGCCTGGAAAACCTTG+TGG | 0.626757 | 8_4:+7317977 | None:intergenic |
| TGTGGAGGTGGCATTGATGG+AGG | 0.627797 | 8_4:+7317995 | None:intergenic |
| AACGGTCCTAGATCTGTACC+TGG | 0.633667 | 8_4:-7318061 | Msa1310680:CDS |
| CCGGGAGGTAGCCCTTGTGG+AGG | 0.636472 | 8_4:+7318163 | None:intergenic |
| ACAACAATGGACAGAGAATG+GGG | 0.640553 | 8_4:-7321116 | Msa1310680:exon |
| GAACTACACTTTGTAGACCA+TGG | 0.643434 | 8_4:+7317766 | None:intergenic |
| CCATCAATGCCACCTCCACA+AGG | 0.643855 | 8_4:-7317992 | Msa1310680:CDS |
| CACCACCACCACCTCCACAA+GGG | 0.645170 | 8_4:-7318174 | Msa1310680:CDS |
| GGTTCAAAACCAGGAAGTGG+CGG | 0.646802 | 8_4:-7321095 | Msa1310680:CDS |
| TGGCCTGGAAAACCTTGTGG+AGG | 0.647536 | 8_4:+7317980 | None:intergenic |
| ACTACCTTGCTCATACTCAA+GGG | 0.651276 | 8_4:-7320914 | Msa1310680:CDS |
| TAAGCACTGAGCAACAACAA+TGG | 0.652548 | 8_4:-7321129 | Msa1310680:exon |
| TGGAGGTCTAGTCCCAATGG+GGG | 0.665514 | 8_4:+7318012 | None:intergenic |
| CTCACTCTTCACAACAACGA+AGG | 0.681289 | 8_4:-7320939 | Msa1310680:CDS |
| CAGCACCTGGTGTTCCACCA+AGG | 0.689929 | 8_4:-7318231 | Msa1310680:CDS |
| ATGGAGGTCTAGTCCCAATG+GGG | 0.691864 | 8_4:+7318011 | None:intergenic |
| GTCGTCGGAGTCGTTCACGG+CGG | 0.760225 | 8_4:+7321042 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTATTATTTAATTATAC+TGG | - | chr8_4:7318323-7318342 | Msa1310680:intron | 10.0% |
| !!! | TATATATTTCAAATTGATTT+TGG | - | chr8_4:7318910-7318929 | Msa1310680:intron | 10.0% |
| !!! | ATATATTTCAAATTGATTTT+GGG | - | chr8_4:7318911-7318930 | Msa1310680:intron | 10.0% |
| !!! | TTTATTATTTATCATGTTTT+GGG | - | chr8_4:7320234-7320253 | Msa1310680:intron | 10.0% |
| !! | AATAATGAAACAAAGATTAA+GGG | + | chr8_4:7318094-7318113 | None:intergenic | 15.0% |
| !! | AAATAATGAAACAAAGATTA+AGG | + | chr8_4:7318095-7318114 | None:intergenic | 15.0% |
| !! | TATTTAAATGAGTTGTAATT+AGG | - | chr8_4:7319296-7319315 | Msa1310680:intron | 15.0% |
| !!! | GTTTATTATTTATCATGTTT+TGG | - | chr8_4:7320233-7320252 | Msa1310680:intron | 15.0% |
| !!! | ATGTTTTTTTGTGTTTGTTA+CGG | - | chr8_4:7318143-7318162 | Msa1310680:CDS | 20.0% |
| !!! | GATTTTGTTTGTTAAGTTAT+AGG | - | chr8_4:7318277-7318296 | Msa1310680:CDS | 20.0% |
| !!! | ATACTGGATTAATAAGTTTT+AGG | - | chr8_4:7318339-7318358 | Msa1310680:intron | 20.0% |
| !!! | GATAAAAAGAAAACTGTTTT+TGG | - | chr8_4:7318448-7318467 | Msa1310680:intron | 20.0% |
| !!! | GTTGTTTTTATAAGTTATCT+TGG | - | chr8_4:7318482-7318501 | Msa1310680:CDS | 20.0% |
| !! | GATATGTTCAAATAACTTAA+AGG | - | chr8_4:7318822-7318841 | Msa1310680:intron | 20.0% |
| !! | ATAGTATAGTACAAGTATTA+GGG | - | chr8_4:7319599-7319618 | Msa1310680:intron | 20.0% |
| !! | TTGAAAGAAATTGTTTCATA+AGG | + | chr8_4:7320196-7320215 | None:intergenic | 20.0% |
| !! | TTATGAAACAATTTCTTTCA+AGG | - | chr8_4:7320195-7320214 | Msa1310680:intron | 20.0% |
| !! | TTGATTAACAAAGTACAAAA+AGG | + | chr8_4:7320297-7320316 | None:intergenic | 20.0% |
| !!! | TTTTATCTTAGAAAAGAAAG+AGG | + | chr8_4:7320421-7320440 | None:intergenic | 20.0% |
| !! | AAAAATTATGTAAACTAGGA+TGG | + | chr8_4:7320452-7320471 | None:intergenic | 20.0% |
| !! | ACACAAAAATTATGTAAACT+AGG | + | chr8_4:7320456-7320475 | None:intergenic | 20.0% |
| !! | TGTAATTGTGAATAAGTTAA+CGG | - | chr8_4:7320473-7320492 | Msa1310680:intron | 20.0% |
| !!! | AGTTGATATTTAATTTTCAC+TGG | - | chr8_4:7320497-7320516 | Msa1310680:intron | 20.0% |
| !! | TTTATTATTTATGTTGACCA+TGG | - | chr8_4:7321080-7321099 | Msa1310680:CDS | 20.0% |
| !!! | ATAGGTGAAATTGTTTTTTG+TGG | - | chr8_4:7318295-7318314 | Msa1310680:CDS | 25.0% |
| !!! | AATAAGTTTTAGGTCATGTT+TGG | - | chr8_4:7318349-7318368 | Msa1310680:intron | 25.0% |
| ! | AAGCTATAAACTACAAGATA+AGG | + | chr8_4:7318382-7318401 | None:intergenic | 25.0% |
| !!! | AAGAAAACTGTTTTTGGATA+AGG | - | chr8_4:7318454-7318473 | Msa1310680:intron | 25.0% |
| ! | AGTTATTTGAACATATCTAC+CGG | + | chr8_4:7318819-7318838 | None:intergenic | 25.0% |
| ! | TGTTCAAATAACTTAAAGGA+TGG | - | chr8_4:7318826-7318845 | Msa1310680:intron | 25.0% |
| !!! | TTGATTTTGGGAAAATTTAG+AGG | - | chr8_4:7318923-7318942 | Msa1310680:intron | 25.0% |
| ! | ACCAAAAAAAGAAGAAAGAA+TGG | - | chr8_4:7319060-7319079 | Msa1310680:intron | 25.0% |
| !!! | TCCATTCTTTCTTCTTTTTT+TGG | + | chr8_4:7319064-7319083 | None:intergenic | 25.0% |
| ! | AAGTCTTAGAGAGAAAATTA+GGG | - | chr8_4:7319083-7319102 | Msa1310680:intron | 25.0% |
| !!! | TAAAAAGTAGTTGGTTTGTT+TGG | - | chr8_4:7319142-7319161 | Msa1310680:intron | 25.0% |
| !!! | AAAAAGTAGTTGGTTTGTTT+GGG | - | chr8_4:7319143-7319162 | Msa1310680:intron | 25.0% |
| !! | TGAAGGATAACACAAATTTT+AGG | - | chr8_4:7319222-7319241 | Msa1310680:intron | 25.0% |
| !! | GAAGGATAACACAAATTTTA+GGG | - | chr8_4:7319223-7319242 | Msa1310680:intron | 25.0% |
| !!! | TTTAAGTTGCACTATTAAGA+AGG | - | chr8_4:7319268-7319287 | Msa1310680:intron | 25.0% |
| !!! | AGGTACAATTTACTTTTGAT+AGG | - | chr8_4:7319316-7319335 | Msa1310680:intron | 25.0% |
| !!! | ACATATTGGTTGGTTTATTT+GGG | - | chr8_4:7319512-7319531 | Msa1310680:intron | 25.0% |
| ! | GATAGTATAGTACAAGTATT+AGG | - | chr8_4:7319598-7319617 | Msa1310680:intron | 25.0% |
| ! | TAGTATAGTACAAGTATTAG+GGG | - | chr8_4:7319600-7319619 | Msa1310680:intron | 25.0% |
| ! | TAGAATCAAACGATTCTTAA+TGG | + | chr8_4:7319663-7319682 | None:intergenic | 25.0% |
| ! | ACACAAATACAATTCATGAT+AGG | - | chr8_4:7319699-7319718 | Msa1310680:intron | 25.0% |
| !! | TCACATTTTTATGTATACAG+AGG | - | chr8_4:7320122-7320141 | Msa1310680:intron | 25.0% |
| !! | TACTGGTATCTTTTATCAAA+TGG | + | chr8_4:7320154-7320173 | None:intergenic | 25.0% |
| ! | TACATACATATATTGAGTTC+CGG | - | chr8_4:7320264-7320283 | Msa1310680:intron | 25.0% |
| ! | AGTACAAAAAGGTAAATTTC+CGG | + | chr8_4:7320286-7320305 | None:intergenic | 25.0% |
| ! | TATTGAGTGTTTAAAAGTTG+TGG | - | chr8_4:7320939-7320958 | Msa1310680:CDS | 25.0% |
| ! | AAAAATTCCCATCTATATCA+AGG | + | chr8_4:7321130-7321149 | None:intergenic | 25.0% |
| !! | TATCTCTTTGAAACTGGAAT+TGG | + | chr8_4:7317680-7317699 | None:intergenic | 30.0% |
| AAGGTTAACATGAAGAAATC+TGG | - | chr8_4:7318053-7318072 | Msa1310680:CDS | 30.0% | |
| !! | TGCTAGCTCTTAGATTTTAA+TGG | - | chr8_4:7318886-7318905 | Msa1310680:intron | 30.0% |
| TTGGGAAAATTTAGAGGATT+AGG | - | chr8_4:7318929-7318948 | Msa1310680:CDS | 30.0% | |
| TGTATATGAGAAGATACATG+AGG | - | chr8_4:7318961-7318980 | Msa1310680:CDS | 30.0% | |
| AGATACATGAGGATTAAGAA+TGG | - | chr8_4:7318972-7318991 | Msa1310680:intron | 30.0% | |
| GAAGTCTTAGAGAGAAAATT+AGG | - | chr8_4:7319082-7319101 | Msa1310680:intron | 30.0% | |
| TATTAGTGGAGAATATGATG+TGG | - | chr8_4:7319113-7319132 | Msa1310680:intron | 30.0% | |
| TGGTAGAGTTAAAAAGTAGT+TGG | - | chr8_4:7319133-7319152 | Msa1310680:intron | 30.0% | |
| ATAAATGACAGTGAAGATAG+TGG | - | chr8_4:7319193-7319212 | Msa1310680:intron | 30.0% | |
| !! | AACACAAATTTTAGGGATAG+AGG | - | chr8_4:7319230-7319249 | Msa1310680:intron | 30.0% |
| !! | ACACAAATTTTAGGGATAGA+GGG | - | chr8_4:7319231-7319250 | Msa1310680:intron | 30.0% |
| !! | GATAGAGAGAGTATTATGAT+AGG | - | chr8_4:7319432-7319451 | Msa1310680:intron | 30.0% |
| AAACCGTAGAGAGAAAATTA+GGG | - | chr8_4:7319459-7319478 | Msa1310680:intron | 30.0% | |
| !! | CACATATTGGTTGGTTTATT+TGG | - | chr8_4:7319511-7319530 | Msa1310680:intron | 30.0% |
| AAGAATCGTTTGATTCTAAG+TGG | - | chr8_4:7319665-7319684 | Msa1310680:intron | 30.0% | |
| CAATTCATGATAGGACATTA+TGG | - | chr8_4:7319708-7319727 | Msa1310680:intron | 30.0% | |
| TCAATGTTGAGAAAATCACA+AGG | + | chr8_4:7319822-7319841 | None:intergenic | 30.0% | |
| AAAGCCATGTCTTAACATTT+CGG | - | chr8_4:7320087-7320106 | Msa1310680:intron | 30.0% | |
| AAAACCGAAATGTTAAGACA+TGG | + | chr8_4:7320094-7320113 | None:intergenic | 30.0% | |
| AAAAATGAGATGCAATGAAC+AGG | + | chr8_4:7321017-7321036 | None:intergenic | 30.0% | |
| TCCTTTACCTTGATATAGAT+GGG | - | chr8_4:7321120-7321139 | Msa1310680:exon | 30.0% | |
| !!! | TAGATGGGAATTTTTTTGCT+TGG | - | chr8_4:7321135-7321154 | Msa1310680:five_prime_UTR | 30.0% |
| !! | TGCTACTATCTCTTTGAAAC+TGG | + | chr8_4:7317686-7317705 | None:intergenic | 35.0% |
| AACAACAATGGACAGAGAAT+GGG | - | chr8_4:7317746-7317765 | Msa1310680:three_prime_UTR | 35.0% | |
| AGATGATTGCGCATGAAATA+GGG | + | chr8_4:7317879-7317898 | None:intergenic | 35.0% | |
| TATTTCATGCGCAATCATCT+CGG | - | chr8_4:7317879-7317898 | Msa1310680:three_prime_UTR | 35.0% | |
| ATGTTAACCTTCCTCTTATG+AGG | + | chr8_4:7318044-7318063 | None:intergenic | 35.0% | |
| TTACGGTTGCAGTTAAGATT+GGG | - | chr8_4:7318160-7318179 | Msa1310680:CDS | 35.0% | |
| AAAAAGGAGAGATCTTTGCT+TGG | + | chr8_4:7318226-7318245 | None:intergenic | 35.0% | |
| AACGAGAACAAACCTGAAAA+AGG | + | chr8_4:7318242-7318261 | None:intergenic | 35.0% | |
| !!! | GTTGCTTTTATAAGTTGTGC+TGG | - | chr8_4:7318711-7318730 | Msa1310680:CDS | 35.0% |
| ! | CTTTTATAAGTTGTGCTGGA+GGG | - | chr8_4:7318715-7318734 | Msa1310680:CDS | 35.0% |
| ! | ATTTAGAGGATTAGGAGTAC+TGG | - | chr8_4:7318937-7318956 | Msa1310680:CDS | 35.0% |
| !!! | TTTTTTTGGTGTTAACCCTC+TGG | + | chr8_4:7319050-7319069 | None:intergenic | 35.0% |
| !! | GAAGATAGTGGATCAAATGA+AGG | - | chr8_4:7319205-7319224 | Msa1310680:intron | 35.0% |
| GAAACCGTAGAGAGAAAATT+AGG | - | chr8_4:7319458-7319477 | Msa1310680:intron | 35.0% | |
| ! | CTACCCTAATTTTCTCTCTA+CGG | + | chr8_4:7319465-7319484 | None:intergenic | 35.0% |
| TAGCACGGTTCTATAAAAGA+TGG | - | chr8_4:7319482-7319501 | Msa1310680:intron | 35.0% | |
| GACTTGTAGAAATACTAGTG+AGG | - | chr8_4:7319557-7319576 | Msa1310680:intron | 35.0% | |
| TTCATGATAGGACATTATGG+TGG | - | chr8_4:7319711-7319730 | Msa1310680:intron | 35.0% | |
| !!! | TCTCACATTTTCAGGTACAT+GGG | + | chr8_4:7319747-7319766 | None:intergenic | 35.0% |
| !!! | TTCTCACATTTTCAGGTACA+TGG | + | chr8_4:7319748-7319767 | None:intergenic | 35.0% |
| ! | CAGTCTATTCTCACATTTTC+AGG | + | chr8_4:7319755-7319774 | None:intergenic | 35.0% |
| ! | TTAAAAGTGTACCTGCTCAT+AGG | + | chr8_4:7319953-7319972 | None:intergenic | 35.0% |
| ACACACACACACAAAAAGAT+AGG | + | chr8_4:7319996-7320015 | None:intergenic | 35.0% | |
| TGTTAATCAATCCACATCTC+AGG | - | chr8_4:7320307-7320326 | Msa1310680:intron | 35.0% | |
| GACTTATCAATTTCTGTGCT+TGG | + | chr8_4:7320335-7320354 | None:intergenic | 35.0% | |
| ! | TCCAAAGTTTTTCTCGCATT+GGG | - | chr8_4:7320358-7320377 | Msa1310680:intron | 35.0% |
| CTGTGAACATCTTTGAATCT+GGG | + | chr8_4:7320385-7320404 | None:intergenic | 35.0% | |
| ACTGTGAACATCTTTGAATC+TGG | + | chr8_4:7320386-7320405 | None:intergenic | 35.0% | |
| GAGTGTTTAAAAGTTGTGGT+TGG | - | chr8_4:7320943-7320962 | Msa1310680:CDS | 35.0% | |
| ! | TTTTGAGCCTTAGAGGATAA+AGG | + | chr8_4:7320974-7320993 | None:intergenic | 35.0% |
| !!! | TGTTTTGTTTTGAGCCTTAG+AGG | + | chr8_4:7320981-7321000 | None:intergenic | 35.0% |
| ATGCAATGAACAGGCAATTT+GGG | + | chr8_4:7321008-7321027 | None:intergenic | 35.0% | |
| ! | CATTGATGTATCAAGTTGTC+TGG | - | chr8_4:7321055-7321074 | Msa1310680:CDS | 35.0% |
| CTCCTTTACCTTGATATAGA+TGG | - | chr8_4:7321119-7321138 | Msa1310680:exon | 35.0% | |
| TCCCATCTATATCAAGGTAA+AGG | + | chr8_4:7321124-7321143 | None:intergenic | 35.0% | |
| TCCTGTAATCAAACAGTTAC+TGG | + | chr8_4:7321161-7321180 | None:intergenic | 35.0% | |
| !! | TAAGCACTGAGCAACAACAA+TGG | - | chr8_4:7317734-7317753 | Msa1310680:three_prime_UTR | 40.0% |
| CAACAACAATGGACAGAGAA+TGG | - | chr8_4:7317745-7317764 | Msa1310680:three_prime_UTR | 40.0% | |
| ACAACAATGGACAGAGAATG+GGG | - | chr8_4:7317747-7317766 | Msa1310680:three_prime_UTR | 40.0% | |
| !! | TATTGCTTCGTTTTGAGCTG+TGG | + | chr8_4:7317799-7317818 | None:intergenic | 40.0% |
| GAGATGATTGCGCATGAAAT+AGG | + | chr8_4:7317880-7317899 | None:intergenic | 40.0% | |
| AACTACCTTGCTCATACTCA+AGG | - | chr8_4:7317948-7317967 | Msa1310680:exon | 40.0% | |
| ACTACCTTGCTCATACTCAA+GGG | - | chr8_4:7317949-7317968 | Msa1310680:exon | 40.0% | |
| GTTACGGTTGCAGTTAAGAT+TGG | - | chr8_4:7318159-7318178 | Msa1310680:CDS | 40.0% | |
| AGAGATCTTTGCTTGGTATC+AGG | + | chr8_4:7318219-7318238 | None:intergenic | 40.0% | |
| ! | GCAAAGATCTCTCCTTTTTC+AGG | - | chr8_4:7318227-7318246 | Msa1310680:CDS | 40.0% |
| TTATCTTGGCACACAGCTAA+TGG | - | chr8_4:7318496-7318515 | Msa1310680:CDS | 40.0% | |
| ! | GCTTTTATAAGTTGTGCTGG+AGG | - | chr8_4:7318714-7318733 | Msa1310680:CDS | 40.0% |
| TATCTACCGGCATAAACACA+TGG | + | chr8_4:7318806-7318825 | None:intergenic | 40.0% | |
| TTAAGAATGGAAGTCTCTCC+CGG | - | chr8_4:7318985-7319004 | Msa1310680:intron | 40.0% | |
| ACAACCACTATCACTACTAC+CGG | + | chr8_4:7319378-7319397 | None:intergenic | 40.0% | |
| TCGATTACACTTCTCCATGT+GGG | - | chr8_4:7319403-7319422 | Msa1310680:intron | 40.0% | |
| TCTCTATCCTAATACCCACA+TGG | + | chr8_4:7319420-7319439 | None:intergenic | 40.0% | |
| GAGAGAAAATTAGGGTAGCA+CGG | - | chr8_4:7319467-7319486 | Msa1310680:intron | 40.0% | |
| CACGGTTCTATAAAAGATGG+CGG | - | chr8_4:7319485-7319504 | Msa1310680:intron | 40.0% | |
| GGTTTATTTGGGTATGTGTG+TGG | - | chr8_4:7319523-7319542 | Msa1310680:intron | 40.0% | |
| AAGTATTAGGGGTTGACATG+AGG | - | chr8_4:7319611-7319630 | Msa1310680:intron | 40.0% | |
| AGTATTAGGGGTTGACATGA+GGG | - | chr8_4:7319612-7319631 | Msa1310680:intron | 40.0% | |
| GAGGACATAAATCGATGTCT+CGG | + | chr8_4:7319931-7319950 | None:intergenic | 40.0% | |
| ATTTATGTCCTCCTATGAGC+AGG | - | chr8_4:7319939-7319958 | Msa1310680:intron | 40.0% | |
| ACACACAAAAAGATAGGAGG+CGG | + | chr8_4:7319990-7320009 | None:intergenic | 40.0% | |
| CACACACACAAAAAGATAGG+AGG | + | chr8_4:7319993-7320012 | None:intergenic | 40.0% | |
| CAGCTGCAAACAATAGATAC+TGG | + | chr8_4:7320171-7320190 | None:intergenic | 40.0% | |
| ! | ATGCGAGAAAAACTTTGGAG+TGG | + | chr8_4:7320357-7320376 | None:intergenic | 40.0% |
| ! | CTCCAAAGTTTTTCTCGCAT+TGG | - | chr8_4:7320357-7320376 | Msa1310680:intron | 40.0% |
| TCCCAATGCGAGAAAAACTT+TGG | + | chr8_4:7320362-7320381 | None:intergenic | 40.0% | |
| TGCAATGAACAGGCAATTTG+GGG | + | chr8_4:7321007-7321026 | None:intergenic | 40.0% | |
| GATGCAATGAACAGGCAATT+TGG | + | chr8_4:7321009-7321028 | None:intergenic | 40.0% | |
| GAACTACACTTTGTAGACCA+TGG | + | chr8_4:7321100-7321119 | None:intergenic | 40.0% | |
| GCCAGTAACTGTTTGATTAC+AGG | - | chr8_4:7321157-7321176 | Msa1310680:five_prime_UTR | 40.0% | |
| AGAGAATGGGGTTCAAAACC+AGG | - | chr8_4:7317759-7317778 | Msa1310680:three_prime_UTR | 45.0% | |
| CTCACTCTTCACAACAACGA+AGG | - | chr8_4:7317924-7317943 | Msa1310680:three_prime_UTR | 45.0% | |
| GTTTCCCTTGAGTATGAGCA+AGG | + | chr8_4:7317956-7317975 | None:intergenic | 45.0% | |
| ! | TGTGACTTGTGAGTGAGACT+TGG | - | chr8_4:7318574-7318593 | Msa1310680:intron | 45.0% |
| AAGTTGTGCTGGAGGGTTTA+TGG | - | chr8_4:7318722-7318741 | Msa1310680:CDS | 45.0% | |
| TCCCTACCATGTGTTTATGC+CGG | - | chr8_4:7318797-7318816 | Msa1310680:intron | 45.0% | |
| ACCGGCATAAACACATGGTA+GGG | + | chr8_4:7318801-7318820 | None:intergenic | 45.0% | |
| TACCGGCATAAACACATGGT+AGG | + | chr8_4:7318802-7318821 | None:intergenic | 45.0% | |
| GACCCAAGTAATCCAGAGTA+CGG | + | chr8_4:7319011-7319030 | None:intergenic | 45.0% | |
| ! | TGTTAACCCTCTGGTTCCTA+GGG | + | chr8_4:7319041-7319060 | None:intergenic | 45.0% |
| ATTAGGGCAGCGCTTATTAG+TGG | - | chr8_4:7319099-7319118 | Msa1310680:intron | 45.0% | |
| !! | TTGGTTTGTTTGGGTGTGTG+TGG | - | chr8_4:7319152-7319171 | Msa1310680:intron | 45.0% |
| !! | TGGTTTGTTTGGGTGTGTGT+GGG | - | chr8_4:7319153-7319172 | Msa1310680:intron | 45.0% |
| AACTCCATGAGAGAAGACTC+CGG | - | chr8_4:7319356-7319375 | Msa1310680:intron | 45.0% | |
| GTCGATTACACTTCTCCATG+TGG | - | chr8_4:7319402-7319421 | Msa1310680:intron | 45.0% | |
| CACTTCTCCATGTGGGTATT+AGG | - | chr8_4:7319410-7319429 | Msa1310680:intron | 45.0% | |
| !! | AAGATGGCGGAGTCACATAT+TGG | - | chr8_4:7319498-7319517 | Msa1310680:intron | 45.0% |
| GGGACATCAAAGAAGACTGT+AGG | - | chr8_4:7319632-7319651 | Msa1310680:intron | 45.0% | |
| TTTGCGAGGTCTTCAATCTC+AGG | + | chr8_4:7319907-7319926 | None:intergenic | 45.0% | |
| AAAGTGTACCTGCTCATAGG+AGG | + | chr8_4:7319950-7319969 | None:intergenic | 45.0% | |
| !!! | TTTTAAAACCAAGCCCCCAG+AGG | - | chr8_4:7320567-7320586 | Msa1310680:intron | 45.0% |
| ATTGATCCTGACATTGGAGG+TGG | + | chr8_4:7320757-7320776 | None:intergenic | 45.0% | |
| ATTGCACCAGGTACAGATCT+AGG | + | chr8_4:7320811-7320830 | None:intergenic | 45.0% | |
| GGATGCACCTTTATCCTCTA+AGG | - | chr8_4:7320964-7320983 | Msa1310680:CDS | 45.0% | |
| TGGGGTTCAAAACCAGGAAG+TGG | - | chr8_4:7317765-7317784 | Msa1310680:three_prime_UTR | 50.0% | |
| GGTTCAAAACCAGGAAGTGG+CGG | - | chr8_4:7317768-7317787 | Msa1310680:three_prime_UTR | 50.0% | |
| !! | TGCTTCGTTTTGAGCTGTGG+CGG | + | chr8_4:7317796-7317815 | None:intergenic | 50.0% |
| TTGTTTCGAGAGCGAGTCGT+CGG | + | chr8_4:7317839-7317858 | None:intergenic | 50.0% | |
| AGCAGCACGTTTAGCGAGAT+TGG | + | chr8_4:7317988-7318007 | None:intergenic | 50.0% | |
| !! | AGGCTGAGTAGGAGCATCTT+TGG | + | chr8_4:7318018-7318037 | None:intergenic | 50.0% |
| TTATGAGGCTGAGGCTGAGT+AGG | + | chr8_4:7318029-7318048 | None:intergenic | 50.0% | |
| ACCTTCCTCTTATGAGGCTG+AGG | + | chr8_4:7318038-7318057 | None:intergenic | 50.0% | |
| CGGTTGCAGTTAAGATTGGG+AGG | - | chr8_4:7318163-7318182 | Msa1310680:CDS | 50.0% | |
| CAGTTAAGATTGGGAGGCCT+GGG | - | chr8_4:7318169-7318188 | Msa1310680:CDS | 50.0% | |
| TGCTTAGTCACACGATACCC+AGG | + | chr8_4:7318189-7318208 | None:intergenic | 50.0% | |
| !! | GAGTGAGACTTGGCTCTGTT+TGG | - | chr8_4:7318584-7318603 | Msa1310680:intron | 50.0% |
| AAGTAATCCAGAGTACGGCC+GGG | + | chr8_4:7319006-7319025 | None:intergenic | 50.0% | |
| CAAGTAATCCAGAGTACGGC+CGG | + | chr8_4:7319007-7319026 | None:intergenic | 50.0% | |
| GGCCGTACTCTGGATTACTT+GGG | - | chr8_4:7319006-7319025 | Msa1310680:intron | 50.0% | |
| ! | GTTAACCCTCTGGTTCCTAG+GGG | + | chr8_4:7319040-7319059 | None:intergenic | 50.0% |
| ! | GTGTTAACCCTCTGGTTCCT+AGG | + | chr8_4:7319042-7319061 | None:intergenic | 50.0% |
| ACTACCGGAGTCTTCTCTCA+TGG | + | chr8_4:7319363-7319382 | None:intergenic | 50.0% | |
| GACTCCGGTAGTAGTGATAG+TGG | - | chr8_4:7319371-7319390 | Msa1310680:intron | 50.0% | |
| TGGCGGAGTCACATATTGGT+TGG | - | chr8_4:7319502-7319521 | Msa1310680:intron | 50.0% | |
| TTGGGTATGTGTGTGGAGAC+TGG | - | chr8_4:7319530-7319549 | Msa1310680:intron | 50.0% | |
| AGAATAGACTGCGCTGTTGC+TGG | - | chr8_4:7319764-7319783 | Msa1310680:intron | 50.0% | |
| TGTGCTTGGTACCTGAGATG+TGG | + | chr8_4:7320321-7320340 | None:intergenic | 50.0% | |
| CACCTATGGGAAATCCTCCA+CGG | - | chr8_4:7320725-7320744 | Msa1310680:intron | 50.0% | |
| ACCTATGGGAAATCCTCCAC+GGG | - | chr8_4:7320726-7320745 | Msa1310680:intron | 50.0% | |
| ATCCTGACATTGGAGGTGGA+GGG | + | chr8_4:7320753-7320772 | None:intergenic | 50.0% | |
| !! | GGCATTGATCCTGACATTGG+AGG | + | chr8_4:7320760-7320779 | None:intergenic | 50.0% |
| !! | GGTGGCATTGATCCTGACAT+TGG | + | chr8_4:7320763-7320782 | None:intergenic | 50.0% |
| AACGGTCCTAGATCTGTACC+TGG | - | chr8_4:7320802-7320821 | Msa1310680:intron | 50.0% | |
| ATGGAGGTCTAGTCCCAATG+GGG | + | chr8_4:7320855-7320874 | None:intergenic | 50.0% | |
| GATGGAGGTCTAGTCCCAAT+GGG | + | chr8_4:7320856-7320875 | None:intergenic | 50.0% | |
| TGATGGAGGTCTAGTCCCAA+TGG | + | chr8_4:7320857-7320876 | None:intergenic | 50.0% | |
| ! | TGTTGGCCTGGAAAACCTTG+TGG | + | chr8_4:7320889-7320908 | None:intergenic | 50.0% |
| ! | TAGCTCTGCATTTGTTGGCC+TGG | + | chr8_4:7320901-7320920 | None:intergenic | 50.0% |
| AGGCCAACAAATGCAGAGCT+AGG | - | chr8_4:7320900-7320919 | Msa1310680:CDS | 50.0% | |
| GGCCAACAAATGCAGAGCTA+GGG | - | chr8_4:7320901-7320920 | Msa1310680:CDS | 50.0% | |
| !! | TGCCCTAGCTCTGCATTTGT+TGG | + | chr8_4:7320906-7320925 | None:intergenic | 50.0% |
| CTCAGCCTCAGCCTCATAAG+AGG | - | chr8_4:7318030-7318049 | Msa1310680:CDS | 55.0% | |
| GCCTCAGCCTCATAAGAGGA+AGG | - | chr8_4:7318034-7318053 | Msa1310680:CDS | 55.0% | |
| GCAGTTAAGATTGGGAGGCC+TGG | - | chr8_4:7318168-7318187 | Msa1310680:CDS | 55.0% | |
| CGGCCGTACTCTGGATTACT+TGG | - | chr8_4:7319005-7319024 | Msa1310680:intron | 55.0% | |
| ATCGATGTCTCGGCTTTGCG+AGG | + | chr8_4:7319921-7319940 | None:intergenic | 55.0% | |
| !! | TGTGGTTTGGTTGCCTCTGG+GGG | + | chr8_4:7320583-7320602 | None:intergenic | 55.0% |
| !! | CTGTGGTTTGGTTGCCTCTG+GGG | + | chr8_4:7320584-7320603 | None:intergenic | 55.0% |
| !! | GCTGTGGTTTGGTTGCCTCT+GGG | + | chr8_4:7320585-7320604 | None:intergenic | 55.0% |
| !! | TGTGGTGCCATTAGGTGCAG+AGG | + | chr8_4:7320614-7320633 | None:intergenic | 55.0% |
| ATAGGCCTTGGTGGAACACC+AGG | + | chr8_4:7320640-7320659 | None:intergenic | 55.0% | |
| ! | TAGTGGAGCTTGTGGTGGTG+GGG | + | chr8_4:7320665-7320684 | None:intergenic | 55.0% |
| ! | GTAGTGGAGCTTGTGGTGGT+GGG | + | chr8_4:7320666-7320685 | None:intergenic | 55.0% |
| AGGATTTCCCATAGGTGCGC+CGG | + | chr8_4:7320722-7320741 | None:intergenic | 55.0% | |
| TCCTGACATTGGAGGTGGAG+GGG | + | chr8_4:7320752-7320771 | None:intergenic | 55.0% | |
| GATCCTGACATTGGAGGTGG+AGG | + | chr8_4:7320754-7320773 | None:intergenic | 55.0% | |
| AATGCCACCACCACCTCCTA+TGG | - | chr8_4:7320774-7320793 | Msa1310680:intron | 55.0% | |
| TTTGCAGCCATAGGAGGTGG+TGG | + | chr8_4:7320784-7320803 | None:intergenic | 55.0% | |
| CCACCTCCTATGGCTGCAAA+CGG | - | chr8_4:7320784-7320803 | Msa1310680:intron | 55.0% | |
| CTAGGACCGTTTGCAGCCAT+AGG | + | chr8_4:7320793-7320812 | None:intergenic | 55.0% | |
| TGGAGGTCTAGTCCCAATGG+GGG | + | chr8_4:7320854-7320873 | None:intergenic | 55.0% | |
| !! | TGTGGAGGTGGCATTGATGG+AGG | + | chr8_4:7320871-7320890 | None:intergenic | 55.0% |
| ! | CCTTGTGGAGGTGGCATTGA+TGG | + | chr8_4:7320874-7320893 | None:intergenic | 55.0% |
| CCATCAATGCCACCTCCACA+AGG | - | chr8_4:7320871-7320890 | Msa1310680:CDS | 55.0% | |
| CCTGGAAAACCTTGTGGAGG+TGG | + | chr8_4:7320883-7320902 | None:intergenic | 55.0% | |
| ! | CCACCTCCACAAGGTTTTCC+AGG | - | chr8_4:7320880-7320899 | Msa1310680:CDS | 55.0% |
| TGGCCTGGAAAACCTTGTGG+AGG | + | chr8_4:7320886-7320905 | None:intergenic | 55.0% | |
| CGAGTCGTCGGAGTCGTTCA+CGG | + | chr8_4:7317827-7317846 | None:intergenic | 60.0% | |
| ! | CGCTAAACGTGCTGCTCGTG+AGG | - | chr8_4:7317992-7318011 | Msa1310680:CDS | 60.0% |
| ! | CTCTGGTTCCTAGGGGAAGG+GGG | + | chr8_4:7319033-7319052 | None:intergenic | 60.0% |
| ! | CCTCTGGTTCCTAGGGGAAG+GGG | + | chr8_4:7319034-7319053 | None:intergenic | 60.0% |
| ! | CCCTCTGGTTCCTAGGGGAA+GGG | + | chr8_4:7319035-7319054 | None:intergenic | 60.0% |
| CCCTTCCCCTAGGAACCAGA+GGG | - | chr8_4:7319032-7319051 | Msa1310680:intron | 60.0% | |
| ! | ACCCTCTGGTTCCTAGGGGA+AGG | + | chr8_4:7319036-7319055 | None:intergenic | 60.0% |
| ! | GTTTGGGTGTGTGTGGGCTG+TGG | - | chr8_4:7319159-7319178 | Msa1310680:intron | 60.0% |
| ! | TTTGGTTGCCTCTGGGGGCT+TGG | + | chr8_4:7320578-7320597 | None:intergenic | 60.0% |
| !! | GGCTGTGGTTTGGTTGCCTC+TGG | + | chr8_4:7320586-7320605 | None:intergenic | 60.0% |
| AGAGGCAGGTGGCTGTGGTT+TGG | + | chr8_4:7320596-7320615 | None:intergenic | 60.0% | |
| CCATTAGGTGCAGAGGCAGG+TGG | + | chr8_4:7320607-7320626 | None:intergenic | 60.0% | |
| CCACCTGCCTCTGCACCTAA+TGG | - | chr8_4:7320604-7320623 | Msa1310680:intron | 60.0% | |
| ! | GTGCCATTAGGTGCAGAGGC+AGG | + | chr8_4:7320610-7320629 | None:intergenic | 60.0% |
| !! | CCAGGTGCTGTGGTGCCATT+AGG | + | chr8_4:7320622-7320641 | None:intergenic | 60.0% |
| CCTAATGGCACCACAGCACC+TGG | - | chr8_4:7320619-7320638 | Msa1310680:intron | 60.0% | |
| ! | TGGTGGAACACCAGGTGCTG+TGG | + | chr8_4:7320632-7320651 | None:intergenic | 60.0% |
| CAGCACCTGGTGTTCCACCA+AGG | - | chr8_4:7320632-7320651 | Msa1310680:intron | 60.0% | |
| !! | AGTGGAGCTTGTGGTGGTGG+GGG | + | chr8_4:7320664-7320683 | None:intergenic | 60.0% |
| !! | GGTAGTGGAGCTTGTGGTGG+TGG | + | chr8_4:7320667-7320686 | None:intergenic | 60.0% |
| !! | GGTGGTAGTGGAGCTTGTGG+TGG | + | chr8_4:7320670-7320689 | None:intergenic | 60.0% |
| !! | GGTGGTGGTAGTGGAGCTTG+TGG | + | chr8_4:7320673-7320692 | None:intergenic | 60.0% |
| CACCACCACCACCTCCACAA+GGG | - | chr8_4:7320689-7320708 | Msa1310680:CDS | 60.0% | |
| GGATTTCCCATAGGTGCGCC+GGG | + | chr8_4:7320721-7320740 | None:intergenic | 60.0% | |
| GCCCGTGGAGGATTTCCCAT+AGG | + | chr8_4:7320730-7320749 | None:intergenic | 60.0% | |
| CCGTTTGCAGCCATAGGAGG+TGG | + | chr8_4:7320787-7320806 | None:intergenic | 60.0% | |
| GGACCGTTTGCAGCCATAGG+AGG | + | chr8_4:7320790-7320809 | None:intergenic | 60.0% | |
| GGAAGAGGTGGCATTGCACC+AGG | + | chr8_4:7320823-7320842 | None:intergenic | 60.0% | |
| GTCGTCGGAGTCGTTCACGG+CGG | + | chr8_4:7317824-7317843 | None:intergenic | 65.0% | |
| AGTCTCTCCCGGCCGTACTC+TGG | - | chr8_4:7318996-7319015 | Msa1310680:intron | 65.0% | |
| ACTTGGGTCCCCCTTCCCCT+AGG | - | chr8_4:7319022-7319041 | Msa1310680:intron | 65.0% | |
| CCCCTTCCCCTAGGAACCAG+AGG | - | chr8_4:7319031-7319050 | Msa1310680:intron | 65.0% | |
| !! | GCTTGTGGTGGTGGGGGCAT+AGG | + | chr8_4:7320658-7320677 | None:intergenic | 65.0% |
| !! | GGTGGTGGTGGTGGTGGTAG+TGG | + | chr8_4:7320682-7320701 | None:intergenic | 65.0% |
| !! | TGTGGAGGTGGTGGTGGTGG+TGG | + | chr8_4:7320688-7320707 | None:intergenic | 65.0% |
| !! | CCTTGTGGAGGTGGTGGTGG+TGG | + | chr8_4:7320691-7320710 | None:intergenic | 65.0% |
| CCACCACCACCACCTCCACA+AGG | - | chr8_4:7320688-7320707 | Msa1310680:CDS | 65.0% | |
| ! | AGCCCTTGTGGAGGTGGTGG+TGG | + | chr8_4:7320694-7320713 | None:intergenic | 65.0% |
| GGTAGCCCTTGTGGAGGTGG+TGG | + | chr8_4:7320697-7320716 | None:intergenic | 65.0% | |
| GGAGGTAGCCCTTGTGGAGG+TGG | + | chr8_4:7320700-7320719 | None:intergenic | 65.0% | |
| CCTCCACAAGGGCTACCTCC+CGG | - | chr8_4:7320700-7320719 | Msa1310680:intron | 65.0% | |
| CTACCTCCCGGCGCACCTAT+GGG | - | chr8_4:7320712-7320731 | Msa1310680:intron | 65.0% | |
| TTTCCCATAGGTGCGCCGGG+AGG | + | chr8_4:7320718-7320737 | None:intergenic | 65.0% | |
| GCCCCTCCACCTCCAATGTC+AGG | - | chr8_4:7320748-7320767 | Msa1310680:intron | 65.0% | |
| ! | GCAGCCATAGGAGGTGGTGG+TGG | + | chr8_4:7320781-7320800 | None:intergenic | 65.0% |
| TTCCACCGCCAGCCCCCATT+GGG | - | chr8_4:7320839-7320858 | Msa1310680:CDS | 65.0% | |
| CTAGTCCCAATGGGGGCTGG+CGG | + | chr8_4:7320847-7320866 | None:intergenic | 65.0% | |
| GGTCTAGTCCCAATGGGGGC+TGG | + | chr8_4:7320850-7320869 | None:intergenic | 65.0% | |
| GGTGCAGAGGCAGGTGGCTG+TGG | + | chr8_4:7320601-7320620 | None:intergenic | 70.0% | |
| ! | GGTGGGGGCATAGGCCTTGG+TGG | + | chr8_4:7320649-7320668 | None:intergenic | 70.0% |
| !! | GGTGGTGGGGGCATAGGCCT+TGG | + | chr8_4:7320652-7320671 | None:intergenic | 70.0% |
| CCGGGAGGTAGCCCTTGTGG+AGG | + | chr8_4:7320703-7320722 | None:intergenic | 70.0% | |
| GCTACCTCCCGGCGCACCTA+TGG | - | chr8_4:7320711-7320730 | Msa1310680:intron | 70.0% | |
| ATTGGAGGTGGAGGGGCCCG+TGG | + | chr8_4:7320745-7320764 | None:intergenic | 70.0% | |
| ! | ATGGGGGCTGGCGGTGGAAG+AGG | + | chr8_4:7320838-7320857 | None:intergenic | 70.0% |
| CTTCCACCGCCAGCCCCCAT+TGG | - | chr8_4:7320838-7320857 | Msa1310680:CDS | 70.0% | |
| GTGGCGGCTCCGCCACTTCC+TGG | + | chr8_4:7317780-7317799 | None:intergenic | 75.0% | |
| GCGCCGGGAGGTAGCCCTTG+TGG | + | chr8_4:7320706-7320725 | None:intergenic | 75.0% | |
| ! | GGGGCTGGCGGTGGAAGAGG+TGG | + | chr8_4:7320835-7320854 | None:intergenic | 75.0% |
| ! | GTCCCAATGGGGGCTGGCGG+TGG | + | chr8_4:7320844-7320863 | None:intergenic | 75.0% |
| ! | GGAGGTGGAGGGGCCCGTGG+AGG | + | chr8_4:7320742-7320761 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 7317670 | 7321215 | 7317670 | ID=Msa1310680;Name=Msa1310680 |
| chr8_4 | mRNA | 7317670 | 7321215 | 7317670 | ID=Msa1310680-mRNA-1;Parent=Msa1310680;Name=Msa1310680-mRNA-1;_AED=0.07;_eAED=0.07;_QI=83|1|1|1|1|1|6|294|326 |
| chr8_4 | exon | 7317670 | 7318329 | 7317670 | ID=Msa1310680-mRNA-1:exon:2641;Parent=Msa1310680-mRNA-1 |
| chr8_4 | exon | 7318482 | 7318556 | 7318482 | ID=Msa1310680-mRNA-1:exon:2640;Parent=Msa1310680-mRNA-1 |
| chr8_4 | exon | 7318669 | 7318743 | 7318669 | ID=Msa1310680-mRNA-1:exon:2639;Parent=Msa1310680-mRNA-1 |
| chr8_4 | exon | 7318925 | 7318990 | 7318925 | ID=Msa1310680-mRNA-1:exon:2638;Parent=Msa1310680-mRNA-1 |
| chr8_4 | exon | 7320637 | 7320713 | 7320637 | ID=Msa1310680-mRNA-1:exon:2637;Parent=Msa1310680-mRNA-1 |
| chr8_4 | exon | 7320811 | 7321215 | 7320811 | ID=Msa1310680-mRNA-1:exon:2636;Parent=Msa1310680-mRNA-1 |
| chr8_4 | five_prime_UTR | 7321133 | 7321215 | 7321133 | ID=Msa1310680-mRNA-1:five_prime_utr;Parent=Msa1310680-mRNA-1 |
| chr8_4 | CDS | 7320811 | 7321132 | 7320811 | ID=Msa1310680-mRNA-1:cds;Parent=Msa1310680-mRNA-1 |
| chr8_4 | CDS | 7320637 | 7320713 | 7320637 | ID=Msa1310680-mRNA-1:cds;Parent=Msa1310680-mRNA-1 |
| chr8_4 | CDS | 7318925 | 7318990 | 7318925 | ID=Msa1310680-mRNA-1:cds;Parent=Msa1310680-mRNA-1 |
| chr8_4 | CDS | 7318669 | 7318743 | 7318669 | ID=Msa1310680-mRNA-1:cds;Parent=Msa1310680-mRNA-1 |
| chr8_4 | CDS | 7318482 | 7318556 | 7318482 | ID=Msa1310680-mRNA-1:cds;Parent=Msa1310680-mRNA-1 |
| chr8_4 | CDS | 7317964 | 7318329 | 7317964 | ID=Msa1310680-mRNA-1:cds;Parent=Msa1310680-mRNA-1 |
| chr8_4 | three_prime_UTR | 7317670 | 7317963 | 7317670 | ID=Msa1310680-mRNA-1:three_prime_utr;Parent=Msa1310680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
