Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1261250 | XP_003609209.3 | 93.416 | 562 | 17 | 4 | 1 | 549 | 1 | 555 | 0.0 | 857 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1261250 | sp|Q28IQ9|CIRBP_XENTR | 38.158 | 76 | 46 | 1 | 5 | 79 | 4 | 79 | 3.49e-12 | 68.2 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0006390 | Msa1261250 | 0.815905 | 7.274238e-52 | -8.615850e-47 |
Msa0006400 | Msa1261250 | 0.841028 | 6.090249e-58 | -8.615850e-47 |
Msa0009420 | Msa1261250 | 0.807908 | 4.016511e-50 | -8.615850e-47 |
Msa0017510 | Msa1261250 | 0.808350 | 3.234542e-50 | -8.615850e-47 |
Msa0075880 | Msa1261250 | 0.806120 | 9.596816e-50 | -8.615850e-47 |
Msa0607540 | Msa1261250 | 0.823376 | 1.432114e-53 | -8.615850e-47 |
Msa0657970 | Msa1261250 | 0.801650 | 8.145054e-49 | -8.615850e-47 |
Msa0695430 | Msa1261250 | 0.806836 | 6.780277e-50 | -8.615850e-47 |
Msa0775190 | Msa1261250 | 0.807674 | 4.503696e-50 | -8.615850e-47 |
Msa0803890 | Msa1261250 | 0.809361 | 1.965382e-50 | -8.615850e-47 |
Msa0806090 | Msa1261250 | 0.810472 | 1.133507e-50 | -8.615850e-47 |
Msa0832370 | Msa1261250 | 0.802393 | 5.731540e-49 | -8.615850e-47 |
Msa0136490 | Msa1261250 | 0.801591 | 8.377398e-49 | -8.615850e-47 |
Msa0157290 | Msa1261250 | 0.808164 | 3.542175e-50 | -8.615850e-47 |
Msa0201070 | Msa1261250 | 0.826973 | 2.021962e-54 | -8.615850e-47 |
Msa0220580 | Msa1261250 | 0.809035 | 2.308755e-50 | -8.615850e-47 |
Msa0220740 | Msa1261250 | 0.838201 | 3.310510e-57 | -8.615850e-47 |
Msa1228210 | Msa1261250 | 0.800153 | 1.647430e-48 | -8.615850e-47 |
Msa1233890 | Msa1261250 | 0.810575 | 1.076835e-50 | -8.615850e-47 |
Msa1241130 | Msa1261250 | -0.825092 | 5.658286e-54 | -8.615850e-47 |
Msa1242230 | Msa1261250 | 0.841563 | 4.405730e-58 | -8.615850e-47 |
Msa1242240 | Msa1261250 | 0.820067 | 8.340285e-53 | -8.615850e-47 |
Msa1261250 | Msa1271280 | 0.815417 | 9.345835e-52 | -8.615850e-47 |
Msa1261250 | Msa1281510 | 0.801884 | 7.294348e-49 | -8.615850e-47 |
Msa1261250 | Msa1283840 | 0.813767 | 2.166463e-51 | -8.615850e-47 |
Msa1261250 | Msa1283860 | 0.804507 | 2.089685e-49 | -8.615850e-47 |
Msa1261250 | Msa1284260 | 0.814211 | 1.729682e-51 | -8.615850e-47 |
Msa1261250 | Msa1291660 | 0.811644 | 6.313700e-51 | -8.615850e-47 |
Msa1261250 | Msa1310680 | -0.803094 | 4.107207e-49 | -8.615850e-47 |
Msa1261250 | Msa1317970 | 0.810659 | 1.032521e-50 | -8.615850e-47 |
Msa1261250 | Msa1317980 | 0.801393 | 9.195520e-49 | -8.615850e-47 |
Msa1261250 | Msa1322860 | 0.832170 | 1.101135e-55 | -8.615850e-47 |
Msa1261250 | Msa1324780 | 0.806157 | 9.425753e-50 | -8.615850e-47 |
Msa1261250 | Msa1327050 | 0.800298 | 1.538880e-48 | -8.615850e-47 |
Msa1261250 | Msa1359040 | 0.803054 | 4.186996e-49 | -8.615850e-47 |
Msa1261250 | Msa1362390 | 0.800558 | 1.361990e-48 | -8.615850e-47 |
Msa1261250 | Msa1367080 | 0.802559 | 5.297539e-49 | -8.615850e-47 |
Msa1261250 | Msa1372760 | 0.801449 | 8.959434e-49 | -8.615850e-47 |
Msa1261250 | Msa1420290 | 0.804913 | 1.719546e-49 | -8.615850e-47 |
Msa1261250 | Msa1429150 | 0.864020 | 1.641181e-64 | -8.615850e-47 |
Msa1261250 | Msa1438970 | 0.827188 | 1.795732e-54 | -8.615850e-47 |
Msa0367980 | Msa1261250 | -0.812550 | 4.007240e-51 | -8.615850e-47 |
Msa0373930 | Msa1261250 | 0.800910 | 1.154589e-48 | -8.615850e-47 |
Msa0397750 | Msa1261250 | 0.801560 | 8.500622e-49 | -8.615850e-47 |
Msa0455670 | Msa1261250 | 0.801279 | 9.705395e-49 | -8.615850e-47 |
Msa0476110 | Msa1261250 | 0.805526 | 1.279339e-49 | -8.615850e-47 |
Msa0480980 | Msa1261250 | 0.802434 | 5.619432e-49 | -8.615850e-47 |
Msa0990960 | Msa1261250 | 0.818489 | 1.909017e-52 | -8.615850e-47 |
Msa1014540 | Msa1261250 | 0.828091 | 1.090179e-54 | -8.615850e-47 |
Msa1054810 | Msa1261250 | 0.844423 | 7.631667e-59 | -8.615850e-47 |
Msa1069990 | Msa1261250 | 0.803228 | 3.852930e-49 | -8.615850e-47 |
Msa1075220 | Msa1261250 | -0.804574 | 2.023751e-49 | -8.615850e-47 |
Msa0243710 | Msa1261250 | 0.818301 | 2.105626e-52 | -8.615850e-47 |
Msa0258760 | Msa1261250 | 0.837260 | 5.774468e-57 | -8.615850e-47 |
Msa0287000 | Msa1261250 | 0.812471 | 4.169055e-51 | -8.615850e-47 |
Msa0291540 | Msa1261250 | 0.810620 | 1.052713e-50 | -8.615850e-47 |
Msa0300570 | Msa1261250 | 0.802934 | 4.432216e-49 | -8.615850e-47 |
Msa0363890 | Msa1261250 | 0.812144 | 4.914446e-51 | -8.615850e-47 |
Msa1156020 | Msa1261250 | 0.809059 | 2.281101e-50 | -8.615850e-47 |
Msa1199220 | Msa1261250 | 0.802806 | 4.710795e-49 | -8.615850e-47 |
Msa0486600 | Msa1261250 | 0.815061 | 1.121076e-51 | -8.615850e-47 |
Msa0493000 | Msa1261250 | 0.807576 | 4.725744e-50 | -8.615850e-47 |
Msa0498220 | Msa1261250 | 0.802049 | 6.746974e-49 | -8.615850e-47 |
Msa0510420 | Msa1261250 | 0.819463 | 1.146443e-52 | -8.615850e-47 |
Msa0524890 | Msa1261250 | -0.826122 | 3.225832e-54 | -8.615850e-47 |
Msa0534440 | Msa1261250 | 0.828775 | 7.451502e-55 | -8.615850e-47 |
Msa0540070 | Msa1261250 | 0.803862 | 2.846382e-49 | -8.615850e-47 |
Msa0548280 | Msa1261250 | -0.845205 | 4.696571e-59 | -8.615850e-47 |
Msa0564510 | Msa1261250 | 0.802975 | 4.345640e-49 | -8.615850e-47 |
Msa0576200 | Msa1261250 | 0.801695 | 7.976208e-49 | -8.615850e-47 |
Msa0585000 | Msa1261250 | -0.813194 | 2.896323e-51 | -8.615850e-47 |
Msa0844900 | Msa1261250 | 0.816035 | 6.805270e-52 | -8.615850e-47 |
Msa0845000 | Msa1261250 | 0.814826 | 1.264397e-51 | -8.615850e-47 |
Msa0845370 | Msa1261250 | 0.878791 | 2.109093e-69 | -8.615850e-47 |
Msa0880140 | Msa1261250 | 0.805385 | 1.369300e-49 | -8.615850e-47 |
Msa0886330 | Msa1261250 | -0.807483 | 4.944194e-50 | -8.615850e-47 |
Msa0891040 | Msa1261250 | 0.801122 | 1.044879e-48 | -8.615850e-47 |
Msa0893130 | Msa1261250 | 0.802058 | 6.717690e-49 | -8.615850e-47 |
Msa0925250 | Msa1261250 | 0.816611 | 5.059238e-52 | -8.615850e-47 |
Msa0925290 | Msa1261250 | 0.829342 | 5.430216e-55 | -8.615850e-47 |
Msa0932780 | Msa1261250 | -0.807705 | 4.436440e-50 | -8.615850e-47 |
Msa0947660 | Msa1261250 | 0.802165 | 6.383869e-49 | -8.615850e-47 |
Msa0959360 | Msa1261250 | 0.811100 | 8.286952e-51 | -8.615850e-47 |
Msa0966090 | Msa1261250 | 0.803239 | 3.832189e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1261250 | MtrunA17_Chr4g0062931 | 93.416 | 562 | 17 | 4 | 1 | 549 | 1 | 555 | 0.0 | 857 |
Msa1261250 | MtrunA17_Chr5g0429721 | 32.911 | 79 | 52 | 1 | 5 | 82 | 34 | 112 | 1.51e-12 | 69.3 |
Msa1261250 | MtrunA17_Chr1g0210241 | 35.955 | 89 | 56 | 1 | 1 | 88 | 1 | 89 | 7.09e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1261250 | AT5G19960.1 | 42.632 | 190 | 70 | 6 | 1 | 189 | 1 | 152 | 1.14e-32 | 128 |
Msa1261250 | AT5G19960.1 | 41.379 | 116 | 66 | 1 | 425 | 540 | 221 | 334 | 1.35e-15 | 78.6 |
Msa1261250 | AT5G19960.2 | 41.379 | 116 | 66 | 1 | 425 | 540 | 133 | 246 | 6.56e-16 | 78.2 |
Msa1261250 | AT4G39260.3 | 43.373 | 83 | 46 | 1 | 10 | 91 | 9 | 91 | 5.89e-15 | 70.9 |
Msa1261250 | AT3G47120.2 | 39.474 | 76 | 45 | 1 | 5 | 79 | 34 | 109 | 3.36e-13 | 70.9 |
Msa1261250 | AT3G47120.1 | 39.474 | 76 | 45 | 1 | 5 | 79 | 34 | 109 | 5.23e-13 | 70.9 |
Find 153 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCCGTGTGGTTAAAGTTAA+TGG | 0.201362 | 8_2:+63567734 | Msa1261250:CDS |
GTTATGAATCAGACTATTAA+TGG | 0.247320 | 8_2:+63567713 | Msa1261250:intron |
GGTGGTGGCAGATCAAATTT+TGG | 0.252328 | 8_2:+63567788 | Msa1261250:CDS |
TCCTATCTCTGTCACGGTCT+CGG | 0.309537 | 8_2:-63568399 | None:intergenic |
CGCACTGTCTTCAATTTGTA+TGG | 0.310277 | 8_2:+63567323 | Msa1261250:CDS |
GGGAAGACCACCAACGTAAA+TGG | 0.322442 | 8_2:-63567276 | None:intergenic |
GGTGGAGGTGGCGGTGGTGG+TGG | 0.340367 | 8_2:+63567773 | Msa1261250:CDS |
GAGTGAAGTAAATATCAATT+TGG | 0.351067 | 8_2:+63567150 | None:intergenic |
GGCGGTGGAGGTGGCGGTGG+TGG | 0.354294 | 8_2:+63567770 | Msa1261250:CDS |
CCCTATCCCTGTCACGGTCT+CGG | 0.354327 | 8_2:-63568120 | None:intergenic |
CATTACCATGATCATAATCT+TGG | 0.358631 | 8_2:-63567895 | None:intergenic |
CCCTATTCCTATCATGGTCT+CGG | 0.364486 | 8_2:-63568213 | None:intergenic |
GTGAGGTCTCGTGGCGGTGG+AGG | 0.372910 | 8_2:+63567758 | Msa1261250:CDS |
ATTGGAATCATGACGGTGAT+AGG | 0.374936 | 8_2:+63568581 | Msa1261250:CDS |
TGTATGGTAAGATTCATCTT+TGG | 0.384035 | 8_2:+63570940 | Msa1261250:three_prime_UTR |
CCCGAGACCATGATAGGAAT+AGG | 0.387868 | 8_2:+63568212 | Msa1261250:CDS |
ATAGGTCTCGAGACCATGAT+AGG | 0.390177 | 8_2:+63568020 | Msa1261250:CDS |
CCCTGTCACGGTCACGGTCT+CGG | 0.400331 | 8_2:-63568306 | None:intergenic |
CTTACAAATGGAAGTCTAGA+TGG | 0.403989 | 8_2:+63570812 | Msa1261250:CDS |
TTAGCATGTGGCATCTTACC+TGG | 0.405355 | 8_2:+63571074 | Msa1261250:three_prime_UTR |
AGGTCTCGTGGCGGTGGAGG+TGG | 0.410261 | 8_2:+63567761 | Msa1261250:CDS |
ATGATGAAAGGAATGGAGAT+TGG | 0.413487 | 8_2:+63567840 | Msa1261250:CDS |
CCTGTCACGGTCACGGTCTC+GGG | 0.417238 | 8_2:-63568305 | None:intergenic |
GCCGTGTGGTTAAAGTTAAT+GGG | 0.420536 | 8_2:+63567735 | Msa1261250:CDS |
AAAGCGTGTTAGACCGTGAT+AGG | 0.423664 | 8_2:+63568281 | Msa1261250:CDS |
CGTGGCGGTGGAGGTGGCGG+TGG | 0.426158 | 8_2:+63567767 | Msa1261250:CDS |
AGAAAGAAGACTTAATGTTA+TGG | 0.428868 | 8_2:+63569438 | Msa1261250:CDS |
AAAGCATGTTAGATGATGAT+TGG | 0.430802 | 8_2:+63568563 | Msa1261250:CDS |
CCTATCTCTGTCACGGTCTC+GGG | 0.431431 | 8_2:-63568398 | None:intergenic |
CCCGAGACCGTGACCGTGAC+AGG | 0.432306 | 8_2:+63568305 | Msa1261250:CDS |
TTCTAAGCTGGAAGAGGGAT+TGG | 0.434291 | 8_2:+63569414 | Msa1261250:CDS |
TTACCTTGGTCAACTGCATC+TGG | 0.438734 | 8_2:-63569645 | None:intergenic |
TCTCGTGGCGGTGGAGGTGG+CGG | 0.438886 | 8_2:+63567764 | Msa1261250:CDS |
AAGATTATAGCAATGCTTGT+TGG | 0.439117 | 8_2:-63571013 | None:intergenic |
CCTATCCCTGTCACGGTCTC+GGG | 0.441091 | 8_2:-63568119 | None:intergenic |
CAAGCTAGAGCAAGTATGTT+AGG | 0.441358 | 8_2:+63568178 | Msa1261250:CDS |
GGTGATGGTGATGGTGGTCT+TGG | 0.448887 | 8_2:+63570785 | Msa1261250:CDS |
ATCAATGACCAACGTACACT+TGG | 0.451190 | 8_2:+63567506 | Msa1261250:CDS |
CCGAGACCATGATAGGAATA+GGG | 0.451847 | 8_2:+63568213 | Msa1261250:CDS |
AAAGCATGTTAGTCCGTGAT+AGG | 0.455542 | 8_2:+63568095 | Msa1261250:CDS |
AACCATGATGTCACGGTCTC+GGG | 0.456700 | 8_2:-63568491 | None:intergenic |
GGGGTGAGGTCTCGTGGCGG+TGG | 0.457192 | 8_2:+63567755 | Msa1261250:CDS |
TTCTATCCCTATTCCTATCA+TGG | 0.457624 | 8_2:-63568219 | None:intergenic |
GGAGTTACAAAAGCACTCTA+AGG | 0.459318 | 8_2:+63569459 | Msa1261250:CDS |
GAGACCGTGACATCATGGTT+AGG | 0.463473 | 8_2:+63568494 | Msa1261250:CDS |
TGATAGGGCTGAAAATGAAC+TGG | 0.463823 | 8_2:+63568597 | Msa1261250:CDS |
GACTAGAATGGAATTTGAAA+AGG | 0.465301 | 8_2:-63571152 | None:intergenic |
TGATGAAAGGAATGGAGATT+GGG | 0.465545 | 8_2:+63567841 | Msa1261250:CDS |
CTCATCATTGTGGTCCCCAT+TGG | 0.467282 | 8_2:-63568897 | None:intergenic |
CCCGAGACCGTGACAGAGAT+AGG | 0.470681 | 8_2:+63568398 | Msa1261250:CDS |
CGAGACCAAGATTATGATCA+TGG | 0.478575 | 8_2:+63567890 | Msa1261250:CDS |
AGAGGTCTCGAGACCGTGAT+AGG | 0.480387 | 8_2:+63567984 | Msa1261250:CDS |
GTAATGAGAAAGATGGATAC+AGG | 0.480470 | 8_2:+63567912 | Msa1261250:CDS |
AAAGATGGATACAGGAATAG+AGG | 0.481913 | 8_2:+63567920 | Msa1261250:CDS |
ACAGGAATAGAGGCAGTGAT+TGG | 0.482052 | 8_2:+63567930 | Msa1261250:CDS |
ATAGTCCATCAGATTCCAAT+GGG | 0.482340 | 8_2:+63568882 | Msa1261250:CDS |
CCCGAGACCGTGACAGGGAT+AGG | 0.483596 | 8_2:+63568119 | Msa1261250:CDS |
TGTTTCATCAGTGGCGTCGA+AGG | 0.487655 | 8_2:-63567297 | None:intergenic |
TTCTATCCCTATCCCTATCA+TGG | 0.488329 | 8_2:-63568033 | None:intergenic |
ACTGGAAAACAGCAGGGTAC+AGG | 0.494266 | 8_2:+63568615 | Msa1261250:CDS |
ATAGATCCCGAGACCATGAT+AGG | 0.494649 | 8_2:+63568206 | Msa1261250:CDS |
ATAGGTCCCGAGACCGTGAC+AGG | 0.495188 | 8_2:+63568113 | Msa1261250:CDS |
CCTATTCCTATCATGGTCTC+GGG | 0.495816 | 8_2:-63568212 | None:intergenic |
TCGAGTCCAATCACCACCTC+TGG | 0.499545 | 8_2:-63567954 | None:intergenic |
ATTGGACCAGAGGTGGTGAT+TGG | 0.502244 | 8_2:+63567948 | Msa1261250:CDS |
TAACCATGATGTCACGGTCT+CGG | 0.507957 | 8_2:-63568492 | None:intergenic |
GGTCTTGGACAACTTACAAA+TGG | 0.508402 | 8_2:+63570800 | Msa1261250:CDS |
ACAGGGTGGAGATGTGGATA+AGG | 0.508614 | 8_2:+63568633 | Msa1261250:CDS |
AGACCGTGACATCATGGTTA+GGG | 0.509461 | 8_2:+63568495 | Msa1261250:CDS |
CATCATAATGATGAAAGGAA+TGG | 0.517662 | 8_2:+63567833 | Msa1261250:CDS |
CACGGTCTCGGGACCTATCA+CGG | 0.518091 | 8_2:-63568294 | None:intergenic |
AAAATGAACTGGAAAACAGC+AGG | 0.521165 | 8_2:+63568608 | Msa1261250:CDS |
CTCGAGACCATGATAGGGAT+AGG | 0.523344 | 8_2:+63568026 | Msa1261250:CDS |
GAAAGCATGTTAGATTGTGA+TGG | 0.525220 | 8_2:+63568373 | Msa1261250:CDS |
TTGTAACTTTCACAAACCCT+AGG | 0.525397 | 8_2:+63567543 | Msa1261250:CDS |
TAGCATCAATTGCAGACCTA+GGG | 0.528965 | 8_2:-63567559 | None:intergenic |
CACGGTCTCGGGACCTATCA+CGG | 0.531377 | 8_2:-63568108 | None:intergenic |
GATAGCTCCATTTACGTTGG+TGG | 0.531498 | 8_2:+63567269 | Msa1261250:CDS |
GATCATGGTAATGAGAAAGA+TGG | 0.531558 | 8_2:+63567905 | Msa1261250:CDS |
TATCTCACTAGCTCCATGTA+TGG | 0.533587 | 8_2:+63570924 | Msa1261250:three_prime_UTR |
CTGGATCCACATCTAAGTTA+CGG | 0.535060 | 8_2:-63568657 | None:intergenic |
TTCTATCCCTATCCCTGTCA+CGG | 0.535901 | 8_2:-63568126 | None:intergenic |
TCAGGTTTCTAAGCTGGAAG+AGG | 0.536137 | 8_2:+63569408 | Msa1261250:intron |
CCGAGACCGTGACAGGGATA+GGG | 0.537071 | 8_2:+63568120 | Msa1261250:CDS |
AGAGTGAAGGAGAAAGACTA+TGG | 0.541578 | 8_2:+63567182 | Msa1261250:five_prime_UTR |
CTCGAGACCTATCACGGTCG+CGG | 0.542402 | 8_2:-63568009 | None:intergenic |
CTGGAAAACAGCAGGGTACA+GGG | 0.545302 | 8_2:+63568616 | Msa1261250:CDS |
CAGGTTTCTAAGCTGGAAGA+GGG | 0.546464 | 8_2:+63569409 | Msa1261250:intron |
AAGATGAATCTTACCATACA+TGG | 0.547436 | 8_2:-63570937 | None:intergenic |
TTCTGCTCCTATCTCTGTCA+CGG | 0.549894 | 8_2:-63568405 | None:intergenic |
GAGCATATGCAAAATTATGA+TGG | 0.550227 | 8_2:+63568061 | Msa1261250:CDS |
GTCCCGAGACCGTGACATCA+TGG | 0.550463 | 8_2:+63568489 | Msa1261250:CDS |
ATAGCATCAATTGCAGACCT+AGG | 0.550720 | 8_2:-63567560 | None:intergenic |
GACTACCTTGACATCAAGAA+TGG | 0.552219 | 8_2:-63567348 | None:intergenic |
AGAAGAGTTGAGCATTTGCA+AGG | 0.555050 | 8_2:+63568424 | Msa1261250:CDS |
TTATACCCCTGTCACGGTCA+CGG | 0.557856 | 8_2:-63568312 | None:intergenic |
CCCCATTAACTTTAACCACA+CGG | 0.561289 | 8_2:-63567736 | None:intergenic |
CAGGGTACAGGGTGGAGATG+TGG | 0.563252 | 8_2:+63568627 | Msa1261250:CDS |
AAAGCATGTTAGACCGCGAT+GGG | 0.565934 | 8_2:+63568467 | Msa1261250:CDS |
GAACACATGCTAGATTATGA+TGG | 0.568841 | 8_2:+63568154 | Msa1261250:CDS |
CTTAAAATAAATTTAGCATG+TGG | 0.570966 | 8_2:+63571062 | Msa1261250:three_prime_UTR |
GAAATTCATACTATATTGTG+CGG | 0.571168 | 8_2:+63570971 | Msa1261250:three_prime_UTR |
CATGGTCTCGGGATCTATCA+CGG | 0.573329 | 8_2:-63568201 | None:intergenic |
TGGTCCCCATTGGAATCTGA+TGG | 0.575643 | 8_2:-63568887 | None:intergenic |
GTTTCATCAGTGGCGTCGAA+GGG | 0.576277 | 8_2:-63567296 | None:intergenic |
TGGTTAAAGTTAATGGGGTG+AGG | 0.576628 | 8_2:+63567741 | Msa1261250:CDS |
TCTTACTCGATGTTTCTCCT+CGG | 0.578233 | 8_2:-63568742 | None:intergenic |
ATTATCATCATAATGATGAA+AGG | 0.578991 | 8_2:+63567828 | Msa1261250:CDS |
AATAGTCCATCAGATTCCAA+TGG | 0.582473 | 8_2:+63568881 | Msa1261250:CDS |
AGGAATGGAGATTGGGATCG+TGG | 0.582856 | 8_2:+63567848 | Msa1261250:CDS |
TCGAGACCATGATAGGGATA+GGG | 0.583018 | 8_2:+63568027 | Msa1261250:CDS |
GAAAGCATGTTAGACCGCGA+TGG | 0.583363 | 8_2:+63568466 | Msa1261250:CDS |
TAGCATGTGGCATCTTACCT+GGG | 0.585228 | 8_2:+63571075 | Msa1261250:three_prime_UTR |
TGGCGCCATTCTTGATGTCA+AGG | 0.589109 | 8_2:+63567343 | Msa1261250:CDS |
CATGGTCTCGAGACCTATCA+CGG | 0.589442 | 8_2:-63568015 | None:intergenic |
GTTAATGGGGTGAGGTCTCG+TGG | 0.592393 | 8_2:+63567749 | Msa1261250:CDS |
TTGGAATCATGACGGTGATA+GGG | 0.593640 | 8_2:+63568582 | Msa1261250:CDS |
GGCAGTGATTGGACCAGAGG+TGG | 0.596616 | 8_2:+63567941 | Msa1261250:CDS |
CCGAGACCGTGACCGTGACA+GGG | 0.596911 | 8_2:+63568306 | Msa1261250:CDS |
AAAGCATGTTAGATTGTGAT+GGG | 0.597103 | 8_2:+63568374 | Msa1261250:CDS |
ATTGGACTCGACAGCATCAG+AGG | 0.597239 | 8_2:+63567966 | Msa1261250:CDS |
GAGAGTGACGGTGATGGTGA+TGG | 0.598421 | 8_2:+63570776 | Msa1261250:CDS |
TTGTCTCTTTAATTGCCTAG+TGG | 0.600658 | 8_2:+63570894 | Msa1261250:three_prime_UTR |
TCAATGACCAACGTACACTT+GGG | 0.603480 | 8_2:+63567507 | Msa1261250:CDS |
TCAATATTGTTCGAGAGTGA+CGG | 0.605658 | 8_2:+63570764 | Msa1261250:CDS |
AGTGCGAATTGTTTCATCAG+TGG | 0.616718 | 8_2:-63567306 | None:intergenic |
TAAGGACCGTAACTTAGATG+TGG | 0.622168 | 8_2:+63568651 | Msa1261250:CDS |
TCAGTTCCACAAAATGACAC+TGG | 0.624699 | 8_2:+63567241 | Msa1261250:exon |
AGAGGCAGTGATTGGACCAG+AGG | 0.630012 | 8_2:+63567938 | Msa1261250:CDS |
AGCATTTCCCAAGTGTACGT+TGG | 0.632194 | 8_2:-63567514 | None:intergenic |
GATGCTATCAACGATATGAA+CGG | 0.633466 | 8_2:+63567575 | Msa1261250:CDS |
TATCCCTAACCATGATGTCA+CGG | 0.634194 | 8_2:-63568498 | None:intergenic |
ATCACATTACCTCATCATTG+TGG | 0.638871 | 8_2:-63568907 | None:intergenic |
TAGGTCTCGAGACCATGATA+GGG | 0.644021 | 8_2:+63568021 | Msa1261250:CDS |
CACGGTCTCGGGACCCATCG+CGG | 0.649874 | 8_2:-63568480 | None:intergenic |
AGTGACGGTGATGGTGATGG+TGG | 0.650592 | 8_2:+63570779 | Msa1261250:CDS |
GATGATAGCTCCATTTACGT+TGG | 0.659955 | 8_2:+63567266 | Msa1261250:CDS |
AGGTAGAAGATGAATTAGAG+AGG | 0.662402 | 8_2:+63569066 | Msa1261250:intron |
CGAGACCGTGACCGTGACAG+GGG | 0.664208 | 8_2:+63568307 | Msa1261250:CDS |
CAATGGGGACCACAATGATG+AGG | 0.667084 | 8_2:+63568898 | Msa1261250:CDS |
TCGCCAGATGCAGTTGACCA+AGG | 0.667948 | 8_2:+63569642 | Msa1261250:CDS |
TTGTTCGAGAGTGACGGTGA+TGG | 0.673128 | 8_2:+63570770 | Msa1261250:CDS |
AAATGAACTGGAAAACAGCA+GGG | 0.689851 | 8_2:+63568609 | Msa1261250:CDS |
ATATTTACCGCAGAAACGGG+AGG | 0.695680 | 8_2:+63569585 | Msa1261250:intron |
AATGGGGTGAGGTCTCGTGG+CGG | 0.699964 | 8_2:+63567752 | Msa1261250:CDS |
GATGATGATTGGAATCATGA+CGG | 0.709264 | 8_2:+63568574 | Msa1261250:CDS |
TAGGTCCCGAGACCGTGACA+GGG | 0.714552 | 8_2:+63568114 | Msa1261250:CDS |
CCGTGTGGTTAAAGTTAATG+GGG | 0.715692 | 8_2:+63567736 | Msa1261250:CDS |
TCAGACTATTAATGGCCGTG+TGG | 0.721965 | 8_2:+63567721 | Msa1261250:intron |
AATGGAGATTGGGATCGTGG+CGG | 0.727702 | 8_2:+63567851 | Msa1261250:CDS |
GCAATTAAAGAGACAACACA+TGG | 0.728798 | 8_2:-63570887 | None:intergenic |
GAAAACAGCAGGGTACAGGG+TGG | 0.744053 | 8_2:+63568619 | Msa1261250:CDS |
TAGTCCATCAGATTCCAATG+GGG | 0.775487 | 8_2:+63568883 | Msa1261250:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAATTAAATAATTAACAA+GGG | - | chr8_2:63567410-63567429 | None:intergenic | 10.0% |
!! | AAGAAATTAAATAATTAACA+AGG | - | chr8_2:63567411-63567430 | None:intergenic | 10.0% |
!! | TAATAATCAATTCAAGTAAT+TGG | + | chr8_2:63567435-63567454 | Msa1261250:intron | 15.0% |
!! | AATAATCAATTCAAGTAATT+GGG | + | chr8_2:63567436-63567455 | Msa1261250:intron | 15.0% |
!! | AAACTAAAATGAATGAATAA+TGG | + | chr8_2:63569138-63569157 | Msa1261250:intron | 15.0% |
!! | TTATCAAACATTCAAATATT+GGG | - | chr8_2:63569273-63569292 | None:intergenic | 15.0% |
!! | TTTATCAAACATTCAAATAT+TGG | - | chr8_2:63569274-63569293 | None:intergenic | 15.0% |
!!! | AAATATAACTTTTTGGAAAA+GGG | - | chr8_2:63570136-63570155 | None:intergenic | 15.0% |
!!! | AAAATATAACTTTTTGGAAA+AGG | - | chr8_2:63570137-63570156 | None:intergenic | 15.0% |
!! | AGTTTATTTGTGTTAATGTT+TGG | + | chr8_2:63567636-63567655 | Msa1261250:intron | 20.0% |
!! | ATTATCATCATAATGATGAA+AGG | + | chr8_2:63567828-63567847 | Msa1261250:CDS | 20.0% |
!! | GTAAAAACAAGATTAAAATG+TGG | - | chr8_2:63569029-63569048 | None:intergenic | 20.0% |
!!! | ATAATGGAAATTTGTCAATA+TGG | + | chr8_2:63569154-63569173 | Msa1261250:intron | 20.0% |
!! | TAAATGATATTGCTAACATT+GGG | + | chr8_2:63569705-63569724 | Msa1261250:intron | 20.0% |
!! | TAAACATTATAAAAAGTCAC+AGG | - | chr8_2:63569879-63569898 | None:intergenic | 20.0% |
!! | AATGTTTAAATTTCACAATG+TGG | + | chr8_2:63569891-63569910 | Msa1261250:intron | 20.0% |
!!! | AATATAACTTTTTGGAAAAG+GGG | - | chr8_2:63570135-63570154 | None:intergenic | 20.0% |
!!! | TTGATTTTCTAATCATTCAT+AGG | - | chr8_2:63570329-63570348 | None:intergenic | 20.0% |
!! | AAACATTGCTTAAAATAATG+TGG | - | chr8_2:63570354-63570373 | None:intergenic | 20.0% |
!! | CTTAAAATAAATTTAGCATG+TGG | + | chr8_2:63571062-63571081 | Msa1261250:three_prime_UTR | 20.0% |
!!! | AAGAAATTTTTAATCAATCC+AGG | - | chr8_2:63571122-63571141 | None:intergenic | 20.0% |
!! | ATGTTTGGTAATTATTGTTG+TGG | + | chr8_2:63567651-63567670 | Msa1261250:intron | 25.0% |
! | GTTATGAATCAGACTATTAA+TGG | + | chr8_2:63567713-63567732 | Msa1261250:intron | 25.0% |
!! | TTTTTCTCCTTTTTATGTGT+TGG | + | chr8_2:63569362-63569381 | Msa1261250:intron | 25.0% |
! | AGAAAGAAGACTTAATGTTA+TGG | + | chr8_2:63569438-63569457 | Msa1261250:CDS | 25.0% |
! | TTAAAACTTAGACATTACCT+TGG | - | chr8_2:63569662-63569681 | None:intergenic | 25.0% |
! | GTAAATGATATTGCTAACAT+TGG | + | chr8_2:63569704-63569723 | Msa1261250:intron | 25.0% |
! | ATATATATAAGACACAAACC+TGG | - | chr8_2:63569816-63569835 | None:intergenic | 25.0% |
!! | CCATGGAAAATATAACTTTT+TGG | - | chr8_2:63570143-63570162 | None:intergenic | 25.0% |
!! | CCAAAAAGTTATATTTTCCA+TGG | + | chr8_2:63570140-63570159 | Msa1261250:intron | 25.0% |
! | TAATTTCAGAGATATTTCCA+TGG | - | chr8_2:63570160-63570179 | None:intergenic | 25.0% |
! | CATTAATTAAGCTCCATAAA+GGG | + | chr8_2:63570375-63570394 | Msa1261250:intron | 25.0% |
! | ATTAATTAAGCTCCATAAAG+GGG | + | chr8_2:63570376-63570395 | Msa1261250:intron | 25.0% |
!!! | TTTTATTTTAGACCCCTTTA+TGG | - | chr8_2:63570391-63570410 | None:intergenic | 25.0% |
! | AAGAAAAACAAGAAATAAGC+TGG | - | chr8_2:63570666-63570685 | None:intergenic | 25.0% |
!! | TATGCTGAGTTAATTTTTGT+TGG | + | chr8_2:63570722-63570741 | Msa1261250:intron | 25.0% |
!! | TTTCATACTTTTGGTATTTC+TGG | - | chr8_2:63570856-63570875 | None:intergenic | 25.0% |
!! | CAAAAATGGTTTCATACTTT+TGG | - | chr8_2:63570865-63570884 | None:intergenic | 25.0% |
! | GAAATTCATACTATATTGTG+CGG | + | chr8_2:63570971-63570990 | Msa1261250:three_prime_UTR | 25.0% |
! | GGTTATGATTTGAGAGTTTT+TGG | + | chr8_2:63567677-63567696 | Msa1261250:intron | 30.0% |
CATCATAATGATGAAAGGAA+TGG | + | chr8_2:63567833-63567852 | Msa1261250:CDS | 30.0% | |
CATTACCATGATCATAATCT+TGG | - | chr8_2:63567898-63567917 | None:intergenic | 30.0% | |
GAGCATATGCAAAATTATGA+TGG | + | chr8_2:63568061-63568080 | Msa1261250:CDS | 30.0% | |
AAAGCATGTTAGATTGTGAT+GGG | + | chr8_2:63568374-63568393 | Msa1261250:CDS | 30.0% | |
AAAGCATGTTAGATGATGAT+TGG | + | chr8_2:63568563-63568582 | Msa1261250:CDS | 30.0% | |
! | TGTTCGTCAAAACTTTTATC+AGG | - | chr8_2:63568709-63568728 | None:intergenic | 30.0% |
AACATAAAAAAGAACAACCG+AGG | + | chr8_2:63568725-63568744 | Msa1261250:CDS | 30.0% | |
ATGTCACAGAAAATTAACAG+AGG | - | chr8_2:63568771-63568790 | None:intergenic | 30.0% | |
GTTAATTTCCAACTGTTCTT+TGG | + | chr8_2:63568793-63568812 | Msa1261250:intron | 30.0% | |
TAAGTAAACCAAAGAACAGT+TGG | - | chr8_2:63568804-63568823 | None:intergenic | 30.0% | |
!!! | CTTGTTTTTACTTGCTTTTG+TGG | + | chr8_2:63569038-63569057 | Msa1261250:intron | 30.0% |
ACTGCTTGATCAACTAAAAA+AGG | + | chr8_2:63569097-63569116 | Msa1261250:CDS | 30.0% | |
GAATGTTTGATAAATGCGTT+AGG | + | chr8_2:63569280-63569299 | Msa1261250:intron | 30.0% | |
ATGCTTGGAAATAAATGAGA+AGG | - | chr8_2:63569487-63569506 | None:intergenic | 30.0% | |
CAATCTCAAAATTTGATGCT+TGG | - | chr8_2:63569502-63569521 | None:intergenic | 30.0% | |
TAAATTTCACAATGTGGCTT+AGG | + | chr8_2:63569897-63569916 | Msa1261250:intron | 30.0% | |
TCTATCGTCAACATAATTCA+AGG | - | chr8_2:63570037-63570056 | None:intergenic | 30.0% | |
GACGATAGAGAATCATTATA+TGG | + | chr8_2:63570048-63570067 | Msa1261250:intron | 30.0% | |
!! | TTCTCTTTAAAGTGTTAGCA+CGG | + | chr8_2:63570207-63570226 | Msa1261250:intron | 30.0% |
GAAAATCAATTGCATGTCAT+TGG | - | chr8_2:63570250-63570269 | None:intergenic | 30.0% | |
CCTTTATGGAGCTTAATTAA+TGG | - | chr8_2:63570377-63570396 | None:intergenic | 30.0% | |
CCATTAATTAAGCTCCATAA+AGG | + | chr8_2:63570374-63570393 | Msa1261250:intron | 30.0% | |
!!! | TTTTTTGCCACCATAATCTA+TGG | - | chr8_2:63570424-63570443 | None:intergenic | 30.0% |
AGATTATGGTGGCAAAAAAT+TGG | + | chr8_2:63570425-63570444 | Msa1261250:intron | 30.0% | |
GAAATGCAAAAGTAGCTATT+AGG | + | chr8_2:63570482-63570501 | Msa1261250:intron | 30.0% | |
! | AAGTGAATTCCTTGTTATCA+AGG | + | chr8_2:63570505-63570524 | Msa1261250:intron | 30.0% |
! | ATTCCTTGTTATCAAGGAAA+TGG | + | chr8_2:63570511-63570530 | Msa1261250:intron | 30.0% |
CAAGAAATAAGCTGGATTAT+AGG | - | chr8_2:63570658-63570677 | None:intergenic | 30.0% | |
!!! | GTTAATTTTTGTTGGTTTGC+AGG | + | chr8_2:63570730-63570749 | Msa1261250:intron | 30.0% |
AAGATGAATCTTACCATACA+TGG | - | chr8_2:63570940-63570959 | None:intergenic | 30.0% | |
TGTATGGTAAGATTCATCTT+TGG | + | chr8_2:63570940-63570959 | Msa1261250:three_prime_UTR | 30.0% | |
AAGATTATAGCAATGCTTGT+TGG | - | chr8_2:63571016-63571035 | None:intergenic | 30.0% | |
TTGGAAGAGAAAAAGAGTGA+AGG | + | chr8_2:63567169-63567188 | Msa1261250:five_prime_UTR | 35.0% | |
TTGTAACTTTCACAAACCCT+AGG | + | chr8_2:63567543-63567562 | Msa1261250:CDS | 35.0% | |
GATGCTATCAACGATATGAA+CGG | + | chr8_2:63567575-63567594 | Msa1261250:CDS | 35.0% | |
ATGATGAAAGGAATGGAGAT+TGG | + | chr8_2:63567840-63567859 | Msa1261250:CDS | 35.0% | |
TGATGAAAGGAATGGAGATT+GGG | + | chr8_2:63567841-63567860 | Msa1261250:CDS | 35.0% | |
! | GATCATGGTAATGAGAAAGA+TGG | + | chr8_2:63567905-63567924 | Msa1261250:CDS | 35.0% |
GTAATGAGAAAGATGGATAC+AGG | + | chr8_2:63567912-63567931 | Msa1261250:CDS | 35.0% | |
AAAGATGGATACAGGAATAG+AGG | + | chr8_2:63567920-63567939 | Msa1261250:CDS | 35.0% | |
GAACACATGCTAGATTATGA+TGG | + | chr8_2:63568154-63568173 | Msa1261250:CDS | 35.0% | |
TTCTATCCCTATTCCTATCA+TGG | - | chr8_2:63568222-63568241 | None:intergenic | 35.0% | |
! | GAAAGCATGTTAGATTGTGA+TGG | + | chr8_2:63568373-63568392 | Msa1261250:CDS | 35.0% |
GATGATGATTGGAATCATGA+CGG | + | chr8_2:63568574-63568593 | Msa1261250:CDS | 35.0% | |
AAAATGAACTGGAAAACAGC+AGG | + | chr8_2:63568608-63568627 | Msa1261250:CDS | 35.0% | |
AAATGAACTGGAAAACAGCA+GGG | + | chr8_2:63568609-63568628 | Msa1261250:CDS | 35.0% | |
ATCCAGACAAAAAGATGGAA+AGG | + | chr8_2:63568674-63568693 | Msa1261250:CDS | 35.0% | |
! | ATCCTTTCCATCTTTTTGTC+TGG | - | chr8_2:63568679-63568698 | None:intergenic | 35.0% |
ATTCAAACTGCAGGAAAATC+AGG | - | chr8_2:63568849-63568868 | None:intergenic | 35.0% | |
ATTTGTCACATTCAAACTGC+AGG | - | chr8_2:63568858-63568877 | None:intergenic | 35.0% | |
AATAGTCCATCAGATTCCAA+TGG | + | chr8_2:63568881-63568900 | Msa1261250:CDS | 35.0% | |
ATAGTCCATCAGATTCCAAT+GGG | + | chr8_2:63568882-63568901 | Msa1261250:CDS | 35.0% | |
ATCACATTACCTCATCATTG+TGG | - | chr8_2:63568910-63568929 | None:intergenic | 35.0% | |
AGGTAGAAGATGAATTAGAG+AGG | + | chr8_2:63569066-63569085 | Msa1261250:intron | 35.0% | |
GCTTGATCAACTAAAAAAGG+AGG | + | chr8_2:63569100-63569119 | Msa1261250:CDS | 35.0% | |
TCTGAACATGTGCATTTCAA+AGG | + | chr8_2:63569244-63569263 | Msa1261250:intron | 35.0% | |
! | TTAAAGATTAGAGCGCTTGT+TGG | - | chr8_2:63569335-63569354 | None:intergenic | 35.0% |
! | TTCTCCTTTTTATGTGTTGG+TGG | + | chr8_2:63569365-63569384 | Msa1261250:intron | 35.0% |
! | CTGAAAAGTGGAATTTTGTC+AGG | + | chr8_2:63569390-63569409 | Msa1261250:intron | 35.0% |
! | ATTTTGTCAGGTTTCTAAGC+TGG | + | chr8_2:63569402-63569421 | Msa1261250:intron | 35.0% |
TGTGTTCAAAGTAAGGATGT+TGG | - | chr8_2:63569537-63569556 | None:intergenic | 35.0% | |
! | CAGCTTTTGTGTTCAAAGTA+AGG | - | chr8_2:63569544-63569563 | None:intergenic | 35.0% |
GAAGATATTTACCGCAGAAA+CGG | + | chr8_2:63569581-63569600 | Msa1261250:intron | 35.0% | |
AAGATATTTACCGCAGAAAC+GGG | + | chr8_2:63569582-63569601 | Msa1261250:intron | 35.0% | |
ATATTGCTAACATTGGGCTT+GGG | + | chr8_2:63569711-63569730 | Msa1261250:intron | 35.0% | |
!!! | ACTGGTTTTAAGTCTTTCTG+TGG | - | chr8_2:63569782-63569801 | None:intergenic | 35.0% |
! | GAAAAATCTCTGCAGTTTTG+TGG | + | chr8_2:63569964-63569983 | Msa1261250:intron | 35.0% |
!! | TCTCTTTAAAGTGTTAGCAC+GGG | + | chr8_2:63570208-63570227 | Msa1261250:intron | 35.0% |
CCATAATCTATGGCATAAGA+TGG | - | chr8_2:63570414-63570433 | None:intergenic | 35.0% | |
CCATCTTATGCCATAGATTA+TGG | + | chr8_2:63570411-63570430 | Msa1261250:intron | 35.0% | |
TCTTATGCCATAGATTATGG+TGG | + | chr8_2:63570414-63570433 | Msa1261250:intron | 35.0% | |
ACTTATGTGCGAAGTTGTAA+TGG | + | chr8_2:63570460-63570479 | Msa1261250:intron | 35.0% | |
AGAGATCTTTCAAATCTCAG+GGG | - | chr8_2:63570550-63570569 | None:intergenic | 35.0% | |
CAGAGATCTTTCAAATCTCA+GGG | - | chr8_2:63570551-63570570 | None:intergenic | 35.0% | |
TCAGAGATCTTTCAAATCTC+AGG | - | chr8_2:63570552-63570571 | None:intergenic | 35.0% | |
GAGATTTGAAAGATCTCTGA+TGG | + | chr8_2:63570552-63570571 | Msa1261250:intron | 35.0% | |
! | TCGATTTGACCTTGTGAATA+TGG | + | chr8_2:63570588-63570607 | Msa1261250:intron | 35.0% |
AAACCAAGACCATATTCACA+AGG | - | chr8_2:63570600-63570619 | None:intergenic | 35.0% | |
! | TTGTGAATATGGTCTTGGTT+TGG | + | chr8_2:63570599-63570618 | Msa1261250:intron | 35.0% |
!! | CGTATTTACTTAACTTGTGC+TGG | + | chr8_2:63570694-63570713 | Msa1261250:intron | 35.0% |
TCAATATTGTTCGAGAGTGA+CGG | + | chr8_2:63570764-63570783 | Msa1261250:CDS | 35.0% | |
CTTACAAATGGAAGTCTAGA+TGG | + | chr8_2:63570812-63570831 | Msa1261250:CDS | 35.0% | |
GACAACACATGGTACAAAAA+TGG | - | chr8_2:63570879-63570898 | None:intergenic | 35.0% | |
GCAATTAAAGAGACAACACA+TGG | - | chr8_2:63570890-63570909 | None:intergenic | 35.0% | |
TTGTCTCTTTAATTGCCTAG+TGG | + | chr8_2:63570894-63570913 | Msa1261250:three_prime_UTR | 35.0% | |
GTGAGATAGTAAAAACCACT+AGG | - | chr8_2:63570912-63570931 | None:intergenic | 35.0% | |
GGCTGATATGTAGAGAAAAA+AGG | + | chr8_2:63571096-63571115 | Msa1261250:three_prime_UTR | 35.0% | |
ATATGTAGAGAAAAAAGGCC+TGG | + | chr8_2:63571101-63571120 | Msa1261250:three_prime_UTR | 35.0% | |
AGAGTGAAGGAGAAAGACTA+TGG | + | chr8_2:63567182-63567201 | Msa1261250:five_prime_UTR | 40.0% | |
TCAGTTCCACAAAATGACAC+TGG | + | chr8_2:63567241-63567260 | Msa1261250:exon | 40.0% | |
GATGATAGCTCCATTTACGT+TGG | + | chr8_2:63567266-63567285 | Msa1261250:CDS | 40.0% | |
AGTGCGAATTGTTTCATCAG+TGG | - | chr8_2:63567309-63567328 | None:intergenic | 40.0% | |
CGCACTGTCTTCAATTTGTA+TGG | + | chr8_2:63567323-63567342 | Msa1261250:CDS | 40.0% | |
GACTACCTTGACATCAAGAA+TGG | - | chr8_2:63567351-63567370 | None:intergenic | 40.0% | |
ATCAATGACCAACGTACACT+TGG | + | chr8_2:63567506-63567525 | Msa1261250:CDS | 40.0% | |
TCAATGACCAACGTACACTT+GGG | + | chr8_2:63567507-63567526 | Msa1261250:CDS | 40.0% | |
TAGCATCAATTGCAGACCTA+GGG | - | chr8_2:63567562-63567581 | None:intergenic | 40.0% | |
ATAGCATCAATTGCAGACCT+AGG | - | chr8_2:63567563-63567582 | None:intergenic | 40.0% | |
TGGTAATTATTGTTGTGGCG+TGG | + | chr8_2:63567656-63567675 | Msa1261250:intron | 40.0% | |
GCCGTGTGGTTAAAGTTAAT+GGG | + | chr8_2:63567735-63567754 | Msa1261250:CDS | 40.0% | |
CCCCATTAACTTTAACCACA+CGG | - | chr8_2:63567739-63567758 | None:intergenic | 40.0% | |
CCGTGTGGTTAAAGTTAATG+GGG | + | chr8_2:63567736-63567755 | Msa1261250:CDS | 40.0% | |
TGGTTAAAGTTAATGGGGTG+AGG | + | chr8_2:63567741-63567760 | Msa1261250:CDS | 40.0% | |
! | GTGGTGGCAGATCAAATTTT+GGG | + | chr8_2:63567789-63567808 | Msa1261250:CDS | 40.0% |
CGAGACCAAGATTATGATCA+TGG | + | chr8_2:63567890-63567909 | Msa1261250:CDS | 40.0% | |
TTCTATCCCTATCCCTATCA+TGG | - | chr8_2:63568036-63568055 | None:intergenic | 40.0% | |
AAAGCATGTTAGTCCGTGAT+AGG | + | chr8_2:63568095-63568114 | Msa1261250:CDS | 40.0% | |
CAAGCTAGAGCAAGTATGTT+AGG | + | chr8_2:63568178-63568197 | Msa1261250:CDS | 40.0% | |
! | CAACTTTTATACCCCTGTCA+CGG | - | chr8_2:63568321-63568340 | None:intergenic | 40.0% |
AGAAGAGTTGAGCATTTGCA+AGG | + | chr8_2:63568424-63568443 | Msa1261250:CDS | 40.0% | |
TATCCCTAACCATGATGTCA+CGG | - | chr8_2:63568501-63568520 | None:intergenic | 40.0% | |
ATTGGAATCATGACGGTGAT+AGG | + | chr8_2:63568581-63568600 | Msa1261250:CDS | 40.0% | |
TTGGAATCATGACGGTGATA+GGG | + | chr8_2:63568582-63568601 | Msa1261250:CDS | 40.0% | |
TGATAGGGCTGAAAATGAAC+TGG | + | chr8_2:63568597-63568616 | Msa1261250:CDS | 40.0% | |
TAAGGACCGTAACTTAGATG+TGG | + | chr8_2:63568651-63568670 | Msa1261250:CDS | 40.0% | |
CTGGATCCACATCTAAGTTA+CGG | - | chr8_2:63568660-63568679 | None:intergenic | 40.0% | |
TGTGGATCCAGACAAAAAGA+TGG | + | chr8_2:63568669-63568688 | Msa1261250:CDS | 40.0% | |
TCTTACTCGATGTTTCTCCT+CGG | - | chr8_2:63568745-63568764 | None:intergenic | 40.0% | |
TAGTCCATCAGATTCCAATG+GGG | + | chr8_2:63568883-63568902 | Msa1261250:CDS | 40.0% | |
AAATGTGGCAGAATCAGTCT+CGG | - | chr8_2:63569014-63569033 | None:intergenic | 40.0% | |
!! | TACTTGCTTTTGTGGTCTTC+AGG | + | chr8_2:63569046-63569065 | Msa1261250:intron | 40.0% |
AGCACCACCAACACATAAAA+AGG | - | chr8_2:63569372-63569391 | None:intergenic | 40.0% | |
!! | GGAGTTACAAAAGCACTCTA+AGG | + | chr8_2:63569459-63569478 | Msa1261250:CDS | 40.0% |
GATATTGCTAACATTGGGCT+TGG | + | chr8_2:63569710-63569729 | Msa1261250:intron | 40.0% | |
AGAAAACATTCATGCAGCTG+AGG | - | chr8_2:63569745-63569764 | None:intergenic | 40.0% | |
AACCAGTGAAAAAGAACTCC+AGG | + | chr8_2:63569795-63569814 | Msa1261250:CDS | 40.0% | |
!! | AACCTGGAGTTCTTTTTCAC+TGG | - | chr8_2:63569800-63569819 | None:intergenic | 40.0% |
TATATGGTGCAGTTGTATGC+AGG | + | chr8_2:63570064-63570083 | Msa1261250:intron | 40.0% | |
! | GCACGGGTATTTGTATTTTG+AGG | + | chr8_2:63570224-63570243 | Msa1261250:intron | 40.0% |
! | CAGCCATTTCCTTGATAACA+AGG | - | chr8_2:63570517-63570536 | None:intergenic | 40.0% |
TGACCTTGTGAATATGGTCT+TGG | + | chr8_2:63570594-63570613 | Msa1261250:intron | 40.0% | |
GGTCTTGGACAACTTACAAA+TGG | + | chr8_2:63570800-63570819 | Msa1261250:CDS | 40.0% | |
TATCTCACTAGCTCCATGTA+TGG | + | chr8_2:63570924-63570943 | Msa1261250:three_prime_UTR | 40.0% | |
! | TTTTCTCTACATATCAGCCC+AGG | - | chr8_2:63571095-63571114 | None:intergenic | 40.0% |
!!! | CATCGTCCAGTGTCATTTTG+TGG | - | chr8_2:63567250-63567269 | None:intergenic | 45.0% |
GATAGCTCCATTTACGTTGG+TGG | + | chr8_2:63567269-63567288 | Msa1261250:CDS | 45.0% | |
AGCATTTCCCAAGTGTACGT+TGG | - | chr8_2:63567517-63567536 | None:intergenic | 45.0% | |
TCAGACTATTAATGGCCGTG+TGG | + | chr8_2:63567721-63567740 | Msa1261250:intron | 45.0% | |
GGCCGTGTGGTTAAAGTTAA+TGG | + | chr8_2:63567734-63567753 | Msa1261250:CDS | 45.0% | |
!! | GGTGGTGGCAGATCAAATTT+TGG | + | chr8_2:63567788-63567807 | Msa1261250:CDS | 45.0% |
ACAGGAATAGAGGCAGTGAT+TGG | + | chr8_2:63567930-63567949 | Msa1261250:CDS | 45.0% | |
ATAGGTCTCGAGACCATGAT+AGG | + | chr8_2:63568020-63568039 | Msa1261250:CDS | 45.0% | |
TAGGTCTCGAGACCATGATA+GGG | + | chr8_2:63568021-63568040 | Msa1261250:CDS | 45.0% | |
TCGAGACCATGATAGGGATA+GGG | + | chr8_2:63568027-63568046 | Msa1261250:CDS | 45.0% | |
TTCTATCCCTATCCCTGTCA+CGG | - | chr8_2:63568129-63568148 | None:intergenic | 45.0% | |
ATAGATCCCGAGACCATGAT+AGG | + | chr8_2:63568206-63568225 | Msa1261250:CDS | 45.0% | |
CCTATTCCTATCATGGTCTC+GGG | - | chr8_2:63568215-63568234 | None:intergenic | 45.0% | |
CCCTATTCCTATCATGGTCT+CGG | - | chr8_2:63568216-63568235 | None:intergenic | 45.0% | |
CCGAGACCATGATAGGAATA+GGG | + | chr8_2:63568213-63568232 | Msa1261250:CDS | 45.0% | |
AAAGCGTGTTAGACCGTGAT+AGG | + | chr8_2:63568281-63568300 | Msa1261250:CDS | 45.0% | |
TTCTGCTCCTATCTCTGTCA+CGG | - | chr8_2:63568408-63568427 | None:intergenic | 45.0% | |
AAAGCATGTTAGACCGCGAT+GGG | + | chr8_2:63568467-63568486 | Msa1261250:CDS | 45.0% | |
TAACCATGATGTCACGGTCT+CGG | - | chr8_2:63568495-63568514 | None:intergenic | 45.0% | |
AGACCGTGACATCATGGTTA+GGG | + | chr8_2:63568495-63568514 | Msa1261250:CDS | 45.0% | |
TCAGGTTTCTAAGCTGGAAG+AGG | + | chr8_2:63569408-63569427 | Msa1261250:intron | 45.0% | |
CAGGTTTCTAAGCTGGAAGA+GGG | + | chr8_2:63569409-63569428 | Msa1261250:intron | 45.0% | |
TTCTAAGCTGGAAGAGGGAT+TGG | + | chr8_2:63569414-63569433 | Msa1261250:CDS | 45.0% | |
ATATTTACCGCAGAAACGGG+AGG | + | chr8_2:63569585-63569604 | Msa1261250:intron | 45.0% | |
TTACCTTGGTCAACTGCATC+TGG | - | chr8_2:63569648-63569667 | None:intergenic | 45.0% | |
TTAGCATGTGGCATCTTACC+TGG | + | chr8_2:63571074-63571093 | Msa1261250:three_prime_UTR | 45.0% | |
TAGCATGTGGCATCTTACCT+GGG | + | chr8_2:63571075-63571094 | Msa1261250:three_prime_UTR | 45.0% | |
!! | TAAAAAAAAATACAATAATA+TGG | - | chr8_2:63567617-63567636 | None:intergenic | 5.0% |
!! | AAAGTAAAATTAATAATAAA+TGG | - | chr8_2:63569998-63570017 | None:intergenic | 5.0% |
GGGAAGACCACCAACGTAAA+TGG | - | chr8_2:63567279-63567298 | None:intergenic | 50.0% | |
! | GTTTCATCAGTGGCGTCGAA+GGG | - | chr8_2:63567299-63567318 | None:intergenic | 50.0% |
! | TGTTTCATCAGTGGCGTCGA+AGG | - | chr8_2:63567300-63567319 | None:intergenic | 50.0% |
TGGCGCCATTCTTGATGTCA+AGG | + | chr8_2:63567343-63567362 | Msa1261250:CDS | 50.0% | |
AGGAATGGAGATTGGGATCG+TGG | + | chr8_2:63567848-63567867 | Msa1261250:CDS | 50.0% | |
AATGGAGATTGGGATCGTGG+CGG | + | chr8_2:63567851-63567870 | Msa1261250:CDS | 50.0% | |
ATTGGACCAGAGGTGGTGAT+TGG | + | chr8_2:63567948-63567967 | Msa1261250:CDS | 50.0% | |
ATTGGACTCGACAGCATCAG+AGG | + | chr8_2:63567966-63567985 | Msa1261250:CDS | 50.0% | |
CATGGTCTCGAGACCTATCA+CGG | - | chr8_2:63568018-63568037 | None:intergenic | 50.0% | |
CTCGAGACCATGATAGGGAT+AGG | + | chr8_2:63568026-63568045 | Msa1261250:CDS | 50.0% | |
CATGGTCTCGGGATCTATCA+CGG | - | chr8_2:63568204-63568223 | None:intergenic | 50.0% | |
CCCGAGACCATGATAGGAAT+AGG | + | chr8_2:63568212-63568231 | Msa1261250:CDS | 50.0% | |
TTATACCCCTGTCACGGTCA+CGG | - | chr8_2:63568315-63568334 | None:intergenic | 50.0% | |
TCCTATCTCTGTCACGGTCT+CGG | - | chr8_2:63568402-63568421 | None:intergenic | 50.0% | |
! | GAAAGCATGTTAGACCGCGA+TGG | + | chr8_2:63568466-63568485 | Msa1261250:CDS | 50.0% |
AACCATGATGTCACGGTCTC+GGG | - | chr8_2:63568494-63568513 | None:intergenic | 50.0% | |
GAGACCGTGACATCATGGTT+AGG | + | chr8_2:63568494-63568513 | Msa1261250:CDS | 50.0% | |
ACTGGAAAACAGCAGGGTAC+AGG | + | chr8_2:63568615-63568634 | Msa1261250:CDS | 50.0% | |
CTGGAAAACAGCAGGGTACA+GGG | + | chr8_2:63568616-63568635 | Msa1261250:CDS | 50.0% | |
ACAGGGTGGAGATGTGGATA+AGG | + | chr8_2:63568633-63568652 | Msa1261250:CDS | 50.0% | |
TGGTCCCCATTGGAATCTGA+TGG | - | chr8_2:63568890-63568909 | None:intergenic | 50.0% | |
CTCATCATTGTGGTCCCCAT+TGG | - | chr8_2:63568900-63568919 | None:intergenic | 50.0% | |
CAATGGGGACCACAATGATG+AGG | + | chr8_2:63568898-63568917 | Msa1261250:CDS | 50.0% | |
! | ATGGCGATGTCTGCTCTAGA+AGG | + | chr8_2:63569173-63569192 | Msa1261250:intron | 50.0% |
!! | GTGTTGGTGGTGCTGAAAAG+TGG | + | chr8_2:63569378-63569397 | Msa1261250:intron | 50.0% |
TTGTTCGAGAGTGACGGTGA+TGG | + | chr8_2:63570770-63570789 | Msa1261250:CDS | 50.0% | |
GTTAATGGGGTGAGGTCTCG+TGG | + | chr8_2:63567749-63567768 | Msa1261250:CDS | 55.0% | |
AGAGGCAGTGATTGGACCAG+AGG | + | chr8_2:63567938-63567957 | Msa1261250:CDS | 55.0% | |
TCGAGTCCAATCACCACCTC+TGG | - | chr8_2:63567957-63567976 | None:intergenic | 55.0% | |
AGAGGTCTCGAGACCGTGAT+AGG | + | chr8_2:63567984-63568003 | Msa1261250:CDS | 55.0% | |
CCTATCTCTGTCACGGTCTC+GGG | - | chr8_2:63568401-63568420 | None:intergenic | 55.0% | |
GAAAACAGCAGGGTACAGGG+TGG | + | chr8_2:63568619-63568638 | Msa1261250:CDS | 55.0% | |
ACAGCATCCTCCCGTTTCTG+CGG | - | chr8_2:63569595-63569614 | None:intergenic | 55.0% | |
TCGCCAGATGCAGTTGACCA+AGG | + | chr8_2:63569642-63569661 | Msa1261250:CDS | 55.0% | |
! | GAGAGTGACGGTGATGGTGA+TGG | + | chr8_2:63570776-63570795 | Msa1261250:CDS | 55.0% |
!! | AGTGACGGTGATGGTGATGG+TGG | + | chr8_2:63570779-63570798 | Msa1261250:CDS | 55.0% |
!! | GGTGATGGTGATGGTGGTCT+TGG | + | chr8_2:63570785-63570804 | Msa1261250:CDS | 55.0% |
AATGGGGTGAGGTCTCGTGG+CGG | + | chr8_2:63567752-63567771 | Msa1261250:CDS | 60.0% | |
GGCAGTGATTGGACCAGAGG+TGG | + | chr8_2:63567941-63567960 | Msa1261250:CDS | 60.0% | |
ATAGGTCCCGCGACCGTGAT+AGG | + | chr8_2:63568002-63568021 | Msa1261250:CDS | 60.0% | |
TCGAGACCTATCACGGTCGC+GGG | - | chr8_2:63568011-63568030 | None:intergenic | 60.0% | |
CTCGAGACCTATCACGGTCG+CGG | - | chr8_2:63568012-63568031 | None:intergenic | 60.0% | |
CACGGTCTCGGGACCTATCA+CGG | - | chr8_2:63568111-63568130 | None:intergenic | 60.0% | |
ATAGGTCCCGAGACCGTGAC+AGG | + | chr8_2:63568113-63568132 | Msa1261250:CDS | 60.0% | |
TAGGTCCCGAGACCGTGACA+GGG | + | chr8_2:63568114-63568133 | Msa1261250:CDS | 60.0% | |
CCTATCCCTGTCACGGTCTC+GGG | - | chr8_2:63568122-63568141 | None:intergenic | 60.0% | |
CCCTATCCCTGTCACGGTCT+CGG | - | chr8_2:63568123-63568142 | None:intergenic | 60.0% | |
CCGAGACCGTGACAGGGATA+GGG | + | chr8_2:63568120-63568139 | Msa1261250:CDS | 60.0% | |
CACGGTCTCGGGACCTATCA+CGG | - | chr8_2:63568111-63568130 | None:intergenic | 60.0% | |
CCCGAGACCGTGACAGAGAT+AGG | + | chr8_2:63568398-63568417 | Msa1261250:CDS | 60.0% | |
GTCCCGAGACCGTGACATCA+TGG | + | chr8_2:63568489-63568508 | Msa1261250:CDS | 60.0% | |
CAGGGTACAGGGTGGAGATG+TGG | + | chr8_2:63568627-63568646 | Msa1261250:CDS | 60.0% | |
CACGGTCGCGGGACCTATCA+CGG | - | chr8_2:63568000-63568019 | None:intergenic | 65.0% | |
CCCGAGACCGTGACAGGGAT+AGG | + | chr8_2:63568119-63568138 | Msa1261250:CDS | 65.0% | |
CCTGTCACGGTCACGGTCTC+GGG | - | chr8_2:63568308-63568327 | None:intergenic | 65.0% | |
CCCTGTCACGGTCACGGTCT+CGG | - | chr8_2:63568309-63568328 | None:intergenic | 65.0% | |
CCGAGACCGTGACCGTGACA+GGG | + | chr8_2:63568306-63568325 | Msa1261250:CDS | 65.0% | |
CGAGACCGTGACCGTGACAG+GGG | + | chr8_2:63568307-63568326 | Msa1261250:CDS | 65.0% | |
GTGAGGTCTCGTGGCGGTGG+AGG | + | chr8_2:63567758-63567777 | Msa1261250:CDS | 70.0% | |
AGGTCTCGTGGCGGTGGAGG+TGG | + | chr8_2:63567761-63567780 | Msa1261250:CDS | 70.0% | |
TCTCGTGGCGGTGGAGGTGG+CGG | + | chr8_2:63567764-63567783 | Msa1261250:CDS | 70.0% | |
CCCGAGACCGTGACCGTGAC+AGG | + | chr8_2:63568305-63568324 | Msa1261250:CDS | 70.0% | |
CACGGTCTCGGGACCCATCG+CGG | - | chr8_2:63568483-63568502 | None:intergenic | 70.0% | |
GGGGTGAGGTCTCGTGGCGG+TGG | + | chr8_2:63567755-63567774 | Msa1261250:CDS | 75.0% | |
! | GGTGGAGGTGGCGGTGGTGG+TGG | + | chr8_2:63567773-63567792 | Msa1261250:CDS | 75.0% |
!! | CGTGGCGGTGGAGGTGGCGG+TGG | + | chr8_2:63567767-63567786 | Msa1261250:CDS | 80.0% |
!! | GGCGGTGGAGGTGGCGGTGG+TGG | + | chr8_2:63567770-63567789 | Msa1261250:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 63567163 | 63571161 | 63567163 | ID=Msa1261250;Name=Msa1261250 |
chr8_2 | mRNA | 63567163 | 63571161 | 63567163 | ID=Msa1261250-mRNA-1;Parent=Msa1261250;Name=Msa1261250-mRNA-1;_AED=0.11;_eAED=0.11;_QI=91|1|0.88|1|1|1|9|320|549 |
chr8_2 | exon | 63567163 | 63567364 | 63567163 | ID=Msa1261250-mRNA-1:exon:20323;Parent=Msa1261250-mRNA-1 |
chr8_2 | exon | 63567503 | 63567601 | 63567503 | ID=Msa1261250-mRNA-1:exon:20324;Parent=Msa1261250-mRNA-1 |
chr8_2 | exon | 63567725 | 63568758 | 63567725 | ID=Msa1261250-mRNA-1:exon:20325;Parent=Msa1261250-mRNA-1 |
chr8_2 | exon | 63568862 | 63568919 | 63568862 | ID=Msa1261250-mRNA-1:exon:20326;Parent=Msa1261250-mRNA-1 |
chr8_2 | exon | 63569068 | 63569121 | 63569068 | ID=Msa1261250-mRNA-1:exon:20327;Parent=Msa1261250-mRNA-1 |
chr8_2 | exon | 63569412 | 63569480 | 63569412 | ID=Msa1261250-mRNA-1:exon:20328;Parent=Msa1261250-mRNA-1 |
chr8_2 | exon | 63569598 | 63569663 | 63569598 | ID=Msa1261250-mRNA-1:exon:20329;Parent=Msa1261250-mRNA-1 |
chr8_2 | exon | 63569748 | 63569816 | 63569748 | ID=Msa1261250-mRNA-1:exon:20330;Parent=Msa1261250-mRNA-1 |
chr8_2 | exon | 63570752 | 63571161 | 63570752 | ID=Msa1261250-mRNA-1:exon:20331;Parent=Msa1261250-mRNA-1 |
chr8_2 | five_prime_UTR | 63567163 | 63567253 | 63567163 | ID=Msa1261250-mRNA-1:five_prime_utr;Parent=Msa1261250-mRNA-1 |
chr8_2 | CDS | 63567254 | 63567364 | 63567254 | ID=Msa1261250-mRNA-1:cds;Parent=Msa1261250-mRNA-1 |
chr8_2 | CDS | 63567503 | 63567601 | 63567503 | ID=Msa1261250-mRNA-1:cds;Parent=Msa1261250-mRNA-1 |
chr8_2 | CDS | 63567725 | 63568758 | 63567725 | ID=Msa1261250-mRNA-1:cds;Parent=Msa1261250-mRNA-1 |
chr8_2 | CDS | 63568862 | 63568919 | 63568862 | ID=Msa1261250-mRNA-1:cds;Parent=Msa1261250-mRNA-1 |
chr8_2 | CDS | 63569068 | 63569121 | 63569068 | ID=Msa1261250-mRNA-1:cds;Parent=Msa1261250-mRNA-1 |
chr8_2 | CDS | 63569412 | 63569480 | 63569412 | ID=Msa1261250-mRNA-1:cds;Parent=Msa1261250-mRNA-1 |
chr8_2 | CDS | 63569598 | 63569663 | 63569598 | ID=Msa1261250-mRNA-1:cds;Parent=Msa1261250-mRNA-1 |
chr8_2 | CDS | 63569748 | 63569816 | 63569748 | ID=Msa1261250-mRNA-1:cds;Parent=Msa1261250-mRNA-1 |
chr8_2 | CDS | 63570752 | 63570841 | 63570752 | ID=Msa1261250-mRNA-1:cds;Parent=Msa1261250-mRNA-1 |
chr8_2 | three_prime_UTR | 63570842 | 63571161 | 63570842 | ID=Msa1261250-mRNA-1:three_prime_utr;Parent=Msa1261250-mRNA-1 |
Gene Sequence |
Protein sequence |