Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234840 | XP_003627353.1 | 89.667 | 300 | 7 | 1 | 1 | 276 | 1 | 300 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234840 | sp|Q940U6|FLU_ARATH | 67.873 | 221 | 45 | 3 | 81 | 276 | 97 | 316 | 1.98e-96 | 289 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001540 | Msa1234840 | 0.805774 | 1.134771e-49 | -8.615850e-47 |
| Msa1234840 | Msa1276840 | 0.923838 | 1.565006e-89 | -8.615850e-47 |
| Msa1234840 | Msa1314930 | 0.836118 | 1.128394e-56 | -8.615850e-47 |
| Msa1234840 | Msa1376560 | 0.800180 | 1.626773e-48 | -8.615850e-47 |
| Msa1234840 | Msa1398840 | 0.806047 | 9.941185e-50 | -8.615850e-47 |
| Msa1040010 | Msa1234840 | 0.806859 | 6.702862e-50 | -8.615850e-47 |
| Msa1084150 | Msa1234840 | 0.812759 | 3.606157e-51 | -8.615850e-47 |
| Msa1127510 | Msa1234840 | 0.801901 | 7.234201e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234840 | MtrunA17_Chr8g0344501 | 89.667 | 300 | 7 | 1 | 1 | 276 | 1 | 300 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234840 | AT3G14110.2 | 67.873 | 221 | 45 | 3 | 81 | 276 | 13 | 232 | 5.67e-99 | 290 |
| Msa1234840 | AT3G14110.3 | 67.873 | 221 | 45 | 3 | 81 | 276 | 98 | 317 | 2.02e-97 | 289 |
| Msa1234840 | AT3G14110.1 | 67.873 | 221 | 45 | 3 | 81 | 276 | 97 | 316 | 2.02e-97 | 289 |
Find 68 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAGATCAACGCGGCTTTA+AGG | 0.184793 | 8_2:-12562210 | Msa1234840:CDS |
| GAAATTAGCTCCTGCTTCTT+TGG | 0.201498 | 8_2:+12562097 | None:intergenic |
| AACACCAACCTTCACCTTTC+AGG | 0.243830 | 8_2:-12564698 | Msa1234840:intron |
| TCTGGGAGCACAGAAGCTTT+TGG | 0.282801 | 8_2:-12561369 | Msa1234840:CDS |
| TGAGCTTGCACAGAATATTA+AGG | 0.320175 | 8_2:-12561999 | Msa1234840:CDS |
| TCCTTAAAGCCGCGTTGATC+TGG | 0.321104 | 8_2:+12562209 | None:intergenic |
| AAATTAGCTCCTGCTTCTTT+GGG | 0.336560 | 8_2:+12562098 | None:intergenic |
| AACTCCGTGAACGCTCTATC+TGG | 0.354176 | 8_2:+12562034 | None:intergenic |
| GGGATAACAATGATAATCCT+TGG | 0.411325 | 8_2:+12564855 | None:intergenic |
| CTGCTAGCAGTAGCCCTCAT+TGG | 0.433063 | 8_2:-12563106 | Msa1234840:CDS |
| GAAAGAGAAGGAGAAGACTC+TGG | 0.438780 | 8_2:-12561387 | Msa1234840:intron |
| GTTATCCGCCTCACATGTTT+CGG | 0.439512 | 8_2:+12563150 | None:intergenic |
| GCAGCCAGATAGAGCGTTCA+CGG | 0.441757 | 8_2:-12562038 | Msa1234840:CDS |
| TTGGAGCAGAATTGAGGAAG+TGG | 0.443371 | 8_2:+12564722 | None:intergenic |
| AAGGTGAAGGTTGGTGTTGT+TGG | 0.445814 | 8_2:+12564703 | None:intergenic |
| GTGAGGACGAGAGATGAAAC+AGG | 0.481777 | 8_2:+12564748 | None:intergenic |
| AGGGCTACTGCTAGCAGTAT+AGG | 0.484170 | 8_2:+12563112 | None:intergenic |
| ACTTTGAGTTATGCTCCCAT+TGG | 0.484515 | 8_2:-12562157 | Msa1234840:CDS |
| TATTGTTGACCCAAAGAAGC+AGG | 0.485732 | 8_2:-12562107 | Msa1234840:CDS |
| AATGAGAGCAATGGCGGTTG+TGG | 0.486057 | 8_2:-12564780 | Msa1234840:CDS |
| CGCTATCCTACCACCACCAA+TGG | 0.489764 | 8_2:+12562141 | None:intergenic |
| TTGAGTTATGCTCCCATTGG+TGG | 0.494886 | 8_2:-12562154 | Msa1234840:CDS |
| GTATATTGCAAGGTTGGAAA+AGG | 0.495847 | 8_2:-12561283 | Msa1234840:CDS |
| GCTTCACTGCTCAAACTGTA+AGG | 0.496267 | 8_2:-12563731 | Msa1234840:intron |
| GCTGATTGTTACACTGAGCT+TGG | 0.497045 | 8_2:-12561339 | Msa1234840:CDS |
| TGACAAGTATATTGCAAGGT+TGG | 0.497877 | 8_2:-12561289 | Msa1234840:CDS |
| CTTGGAGACCTTGAGAAAGC+AGG | 0.512469 | 8_2:-12561321 | Msa1234840:CDS |
| CACTTGTCTTTCTTTAAAAG+CGG | 0.515703 | 8_2:-12563812 | Msa1234840:CDS |
| AGTATTGCCCTGCTTTCTCA+AGG | 0.519335 | 8_2:+12561313 | None:intergenic |
| TTTGAGCAGTGAAGCACGGT+TGG | 0.527472 | 8_2:+12563739 | None:intergenic |
| GTTTCGGCTAAAGCTTTACA+AGG | 0.537677 | 8_2:+12563166 | None:intergenic |
| TGTTCTGAGAGGATAAATGT+TGG | 0.549777 | 8_2:+12564825 | None:intergenic |
| TCGCAAGAAACAGCAATGAA+TGG | 0.550094 | 8_2:+12563212 | None:intergenic |
| GAATATTAAGGATCCTATTG+AGG | 0.559537 | 8_2:-12561987 | Msa1234840:CDS |
| GCTATCCTACCACCACCAAT+GGG | 0.559574 | 8_2:+12562142 | None:intergenic |
| AAAGAGAAGGAGAAGACTCT+GGG | 0.564267 | 8_2:-12561386 | Msa1234840:intron |
| AATTGAGGAAGTGGAGAGTG+AGG | 0.564867 | 8_2:+12564731 | None:intergenic |
| AGTTATGCTCCCATTGGTGG+TGG | 0.570022 | 8_2:-12562151 | Msa1234840:CDS |
| GTGTTGTTGGAGCAGAATTG+AGG | 0.570951 | 8_2:+12564716 | None:intergenic |
| GCCCTCATTGGAGCCACTGT+GGG | 0.584271 | 8_2:-12563094 | Msa1234840:CDS |
| CTAACCTGAAAGGTGAAGGT+TGG | 0.586391 | 8_2:+12564694 | None:intergenic |
| ATGGGAGCATAACTCAAAGT+GGG | 0.586412 | 8_2:+12562160 | None:intergenic |
| TCTTTCTTTAAAAGCGGACA+AGG | 0.586590 | 8_2:-12563806 | Msa1234840:CDS |
| TTGGAGACCTTGAGAAAGCA+GGG | 0.586734 | 8_2:-12561320 | Msa1234840:CDS |
| TGCAAAACAAATGAGAGCAA+TGG | 0.586786 | 8_2:-12564789 | Msa1234840:exon |
| CTCCCACAGTGGCTCCAATG+AGG | 0.591943 | 8_2:+12563092 | None:intergenic |
| AATGGGAGCATAACTCAAAG+TGG | 0.603986 | 8_2:+12562159 | None:intergenic |
| TCCCACAGTGGCTCCAATGA+GGG | 0.606337 | 8_2:+12563093 | None:intergenic |
| CTCATTGGAGCCACTGTGGG+AGG | 0.607784 | 8_2:-12563091 | Msa1234840:intron |
| TAGGGTTGGTCGCGAGACAA+AGG | 0.608850 | 8_2:-12562267 | Msa1234840:CDS |
| ACAGTTTGAGCAGTGAAGCA+CGG | 0.611538 | 8_2:+12563735 | None:intergenic |
| TCAAAAGTATCTTTCAAGAG+TGG | 0.614683 | 8_2:+12563778 | None:intergenic |
| ATGCTCCCATTGGTGGTGGT+AGG | 0.631229 | 8_2:-12562147 | Msa1234840:CDS |
| GGTTGTTGTTCTGTTCTGAG+AGG | 0.631823 | 8_2:+12564814 | None:intergenic |
| CTAACTAACCTGAAAGGTGA+AGG | 0.632215 | 8_2:+12564690 | None:intergenic |
| CATTGGTGGTGGTAGGATAG+CGG | 0.635961 | 8_2:-12562140 | Msa1234840:CDS |
| AAGTAACTAACTAACCTGAA+AGG | 0.636648 | 8_2:+12564684 | None:intergenic |
| TGGGAGCATAACTCAAAGTG+GGG | 0.643586 | 8_2:+12562161 | None:intergenic |
| AAAACAAATGAGAGCAATGG+CGG | 0.644299 | 8_2:-12564786 | Msa1234840:exon |
| AGCCCTCATTGGAGCCACTG+TGG | 0.646086 | 8_2:-12563095 | Msa1234840:CDS |
| AGCTTTAGCCGAAACATGTG+AGG | 0.650728 | 8_2:-12563158 | Msa1234840:CDS |
| ACTATGACAAGTATATTGCA+AGG | 0.654467 | 8_2:-12561293 | Msa1234840:CDS |
| TTTAGCCGAAACATGTGAGG+CGG | 0.677113 | 8_2:-12563155 | Msa1234840:CDS |
| TTGGTCGCGAGACAAAGGAA+AGG | 0.686385 | 8_2:-12562262 | Msa1234840:CDS |
| GGGAGCATAACTCAAAGTGG+GGG | 0.697421 | 8_2:+12562162 | None:intergenic |
| AAAGGAAAGGAGAATTACAG+CGG | 0.729898 | 8_2:-12562249 | Msa1234840:CDS |
| TAGTACCTTACCTCCCACAG+TGG | 0.794975 | 8_2:+12563081 | None:intergenic |
| GCAATTACTCCAGATCAACG+CGG | 0.803672 | 8_2:-12562218 | Msa1234840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAAATGTATAAATAAA+GGG | + | chr8_2:12561983-12562002 | None:intergenic | 10.0% |
| !! | TTAAGAAAATGTATAAATAA+AGG | + | chr8_2:12561984-12562003 | None:intergenic | 10.0% |
| !!! | ATTTTACTTATTGATTTAAT+TGG | - | chr8_2:12563190-12563209 | Msa1234840:CDS | 10.0% |
| !! | ATTGTATAAAAACAGAAAAA+GGG | + | chr8_2:12561573-12561592 | None:intergenic | 15.0% |
| !! | AATTGTATAAAAACAGAAAA+AGG | + | chr8_2:12561574-12561593 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr8_2:12561918-12561937 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr8_2:12561919-12561938 | None:intergenic | 15.0% |
| !! | AAGAAAATGTATAAATAAAG+GGG | + | chr8_2:12561982-12562001 | None:intergenic | 15.0% |
| !!! | AATAAATAAGGGTATAATAA+TGG | - | chr8_2:12563411-12563430 | Msa1234840:intron | 15.0% |
| !!! | CATTTTATTTGTACTTTTTA+TGG | - | chr8_2:12563814-12563833 | Msa1234840:CDS | 15.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr8_2:12561849-12561868 | None:intergenic | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | + | chr8_2:12561885-12561904 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr8_2:12561886-12561905 | None:intergenic | 20.0% |
| !! | AAAACTGTGTCAATTAAATT+GGG | - | chr8_2:12562018-12562037 | Msa1234840:CDS | 20.0% |
| !!! | ATTAATTGTGTTGATTTTGA+TGG | - | chr8_2:12563316-12563335 | Msa1234840:intron | 20.0% |
| !! | TGGATGAAATTCAATAAATA+AGG | - | chr8_2:12563399-12563418 | Msa1234840:intron | 20.0% |
| !! | GGATGAAATTCAATAAATAA+GGG | - | chr8_2:12563400-12563419 | Msa1234840:intron | 20.0% |
| !! | AAAAATAATAAATGCTGCAT+TGG | - | chr8_2:12563436-12563455 | Msa1234840:intron | 20.0% |
| !! | AGAAGTGAACAAATAAATAA+AGG | - | chr8_2:12563716-12563735 | Msa1234840:intron | 20.0% |
| !! | CTAATTTCTAAGTTAAAAAG+TGG | - | chr8_2:12564063-12564082 | Msa1234840:intron | 20.0% |
| !!! | AATCTAATGTTGATTTTGTA+GGG | + | chr8_2:12564257-12564276 | None:intergenic | 20.0% |
| !!! | AAATCTAATGTTGATTTTGT+AGG | + | chr8_2:12564258-12564277 | None:intergenic | 20.0% |
| !! | ATAGCTTATATGAAAACAAT+TGG | + | chr8_2:12564484-12564503 | None:intergenic | 20.0% |
| !! | AGGATAAATGTTGGATTTTT+GGG | + | chr8_2:12561314-12561333 | None:intergenic | 25.0% |
| ! | TTTCATCATATACAAGACTT+TGG | - | chr8_2:12561529-12561548 | Msa1234840:intron | 25.0% |
| !! | TCATGGAAATAAGTTGAAAA+CGG | + | chr8_2:12561769-12561788 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr8_2:12561850-12561869 | None:intergenic | 25.0% |
| ! | CAAAACTGTGTCAATTAAAT+TGG | - | chr8_2:12562017-12562036 | Msa1234840:CDS | 25.0% |
| !! | AATTAAGTTGCTTATCCAAT+AGG | - | chr8_2:12562144-12562163 | Msa1234840:CDS | 25.0% |
| ! | AGAAGATACACTAAAATACT+TGG | + | chr8_2:12562171-12562190 | None:intergenic | 25.0% |
| !! | TTTTAGTGTATCTTCTTTAC+CGG | - | chr8_2:12562175-12562194 | Msa1234840:CDS | 25.0% |
| !! | AAACTTAACTAGTTTCCATA+AGG | + | chr8_2:12562205-12562224 | None:intergenic | 25.0% |
| ! | GTCAAAATAATGAAAATGTG+TGG | - | chr8_2:12562225-12562244 | Msa1234840:CDS | 25.0% |
| !!! | AGTAATTTTTCAGTGAAATG+AGG | - | chr8_2:12562489-12562508 | Msa1234840:intron | 25.0% |
| ! | TTGTGATTTATGACTGAAAA+TGG | - | chr8_2:12562878-12562897 | Msa1234840:intron | 25.0% |
| !!! | TATTGATTTAATTGGTTCGT+CGG | - | chr8_2:12563198-12563217 | Msa1234840:CDS | 25.0% |
| ! | CTCTAAATAATAGTCGTTTA+AGG | - | chr8_2:12563268-12563287 | Msa1234840:intron | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | + | chr8_2:12563368-12563387 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | + | chr8_2:12563369-12563388 | None:intergenic | 25.0% |
| !!! | AGTTAAGATATTTTGCTATG+TGG | - | chr8_2:12563579-12563598 | Msa1234840:intron | 25.0% |
| ! | AGTGAACAAATAAATAAAGG+TGG | - | chr8_2:12563719-12563738 | Msa1234840:intron | 25.0% |
| ! | ATACAGATATCAGATATTCA+AGG | + | chr8_2:12563752-12563771 | None:intergenic | 25.0% |
| ! | CTGAATTTATTGATCTGATA+GGG | - | chr8_2:12563860-12563879 | Msa1234840:intron | 25.0% |
| !! | AAAGTGGAAAGAATTTTCTA+AGG | - | chr8_2:12564079-12564098 | Msa1234840:intron | 25.0% |
| ! | ACACATTAATAAGCGAAATA+GGG | + | chr8_2:12564220-12564239 | None:intergenic | 25.0% |
| !!! | TATAAGTTGATAGAACTCTA+TGG | - | chr8_2:12564387-12564406 | Msa1234840:intron | 25.0% |
| ! | ATTTGCACATTGTGTATTAT+AGG | - | chr8_2:12564665-12564684 | Msa1234840:intron | 25.0% |
| ! | GGATAAATGTTGGATTTTTG+GGG | + | chr8_2:12561313-12561332 | None:intergenic | 30.0% |
| ! | GAGGATAAATGTTGGATTTT+TGG | + | chr8_2:12561315-12561334 | None:intergenic | 30.0% |
| AAGTAACTAACTAACCTGAA+AGG | + | chr8_2:12561464-12561483 | None:intergenic | 30.0% | |
| ! | TTCAGGTTAGTTAGTTACTT+TGG | - | chr8_2:12561464-12561483 | Msa1234840:intron | 30.0% |
| !!! | GATTTTGAGTGTCATTTTGA+AGG | + | chr8_2:12561504-12561523 | None:intergenic | 30.0% |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr8_2:12561797-12561816 | None:intergenic | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | + | chr8_2:12561871-12561890 | None:intergenic | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | + | chr8_2:12561872-12561891 | None:intergenic | 30.0% |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr8_2:12561975-12561994 | None:intergenic | 30.0% | |
| ACTAAAATACTTGGACCTAT+TGG | + | chr8_2:12562162-12562181 | None:intergenic | 30.0% | |
| AATAATGAAAATGTGTGGTG+TGG | - | chr8_2:12562230-12562249 | Msa1234840:CDS | 30.0% | |
| ! | CACTTGTCTTTCTTTAAAAG+CGG | - | chr8_2:12562333-12562352 | Msa1234840:intron | 30.0% |
| !! | TCAAAAGTATCTTTCAAGAG+TGG | + | chr8_2:12562370-12562389 | None:intergenic | 30.0% |
| ! | TCTTGAAAGATACTTTTGAC+CGG | - | chr8_2:12562371-12562390 | Msa1234840:intron | 30.0% |
| ! | ATTTGAGTGAACACTCATTT+TGG | - | chr8_2:12562522-12562541 | Msa1234840:intron | 30.0% |
| ACAATCACAGATTATAGTGA+CGG | + | chr8_2:12562567-12562586 | None:intergenic | 30.0% | |
| GTATCTTTCTTTACTGAGTT+TGG | - | chr8_2:12562614-12562633 | Msa1234840:intron | 30.0% | |
| ACTAATCAAATACACATCCA+AGG | + | chr8_2:12562641-12562660 | None:intergenic | 30.0% | |
| ! | GTGTCACTATAGTAATTTCA+TGG | + | chr8_2:12562705-12562724 | None:intergenic | 30.0% |
| ACAATCGTTTGTGAAGATAT+TGG | + | chr8_2:12562837-12562856 | None:intergenic | 30.0% | |
| ! | ATCTTCACAAACGATTGTTT+TGG | - | chr8_2:12562839-12562858 | Msa1234840:intron | 30.0% |
| ! | AGCAATGAATGGAATCTTTT+TGG | + | chr8_2:12562925-12562944 | None:intergenic | 30.0% |
| !!! | GTTTTAGTCTTAAAGCACTT+GGG | + | chr8_2:12563135-12563154 | None:intergenic | 30.0% |
| !!! | AGTTTTAGTCTTAAAGCACT+TGG | + | chr8_2:12563136-12563155 | None:intergenic | 30.0% |
| ! | TTCGTCGGTTGTATTAATAT+AGG | - | chr8_2:12563213-12563232 | Msa1234840:CDS | 30.0% |
| GACTATTATTTAGAGACAGA+GGG | + | chr8_2:12563263-12563282 | None:intergenic | 30.0% | |
| CCCTTATTAATTGTAGTTAG+TGG | - | chr8_2:12563365-12563384 | Msa1234840:intron | 30.0% | |
| AAGAGACAATTATTGTGAGA+CGG | - | chr8_2:12563502-12563521 | Msa1234840:intron | 30.0% | |
| CTGTATATCACAAGTTAAAC+CGG | - | chr8_2:12563766-12563785 | Msa1234840:CDS | 30.0% | |
| CCTATCAGATCAATAAATTC+AGG | + | chr8_2:12563862-12563881 | None:intergenic | 30.0% | |
| CCTGAATTTATTGATCTGAT+AGG | - | chr8_2:12563859-12563878 | Msa1234840:intron | 30.0% | |
| ATTTATTGATCTGATAGGGT+TGG | - | chr8_2:12563864-12563883 | Msa1234840:intron | 30.0% | |
| GAATATTAAGGATCCTATTG+AGG | - | chr8_2:12564158-12564177 | Msa1234840:intron | 30.0% | |
| CACACATTAATAAGCGAAAT+AGG | + | chr8_2:12564221-12564240 | None:intergenic | 30.0% | |
| !! | TACATAAGCACTGATATGAT+AGG | + | chr8_2:12564369-12564388 | None:intergenic | 30.0% |
| !! | GCTGTTTTCATAAACTGTTT+TGG | - | chr8_2:12564506-12564525 | Msa1234840:intron | 30.0% |
| AAATATACTCAGGGTCTATA+TGG | + | chr8_2:12564649-12564668 | None:intergenic | 30.0% | |
| ACAATGTGCAAATATACTCA+GGG | + | chr8_2:12564658-12564677 | None:intergenic | 30.0% | |
| ACTATGACAAGTATATTGCA+AGG | - | chr8_2:12564852-12564871 | Msa1234840:five_prime_UTR | 30.0% | |
| GGGATAACAATGATAATCCT+TGG | + | chr8_2:12561293-12561312 | None:intergenic | 35.0% | |
| !! | TGTTCTGAGAGGATAAATGT+TGG | + | chr8_2:12561323-12561342 | None:intergenic | 35.0% |
| !!! | TGCTCTCATTTGTTTTGCAA+AGG | + | chr8_2:12561355-12561374 | None:intergenic | 35.0% |
| TGCAAAACAAATGAGAGCAA+TGG | - | chr8_2:12561356-12561375 | Msa1234840:CDS | 35.0% | |
| AAAACAAATGAGAGCAATGG+CGG | - | chr8_2:12561359-12561378 | Msa1234840:CDS | 35.0% | |
| !! | ATTTTGAAGGAACAAGAGGA+AGG | + | chr8_2:12561491-12561510 | None:intergenic | 35.0% |
| !!! | TGTCATTTTGAAGGAACAAG+AGG | + | chr8_2:12561495-12561514 | None:intergenic | 35.0% |
| ! | AATAAGTTGAAAACGGCTCA+TGG | + | chr8_2:12561762-12561781 | None:intergenic | 35.0% |
| AGAAAATGGGTCAGTTATTC+CGG | + | chr8_2:12561836-12561855 | None:intergenic | 35.0% | |
| CTGTGTCAATTAAATTGGGA+CGG | - | chr8_2:12562022-12562041 | Msa1234840:CDS | 35.0% | |
| AAGACAATGATACTCACATG+AGG | - | chr8_2:12562281-12562300 | Msa1234840:intron | 35.0% | |
| !! | TTGGACTTGTTGAATGAATC+AGG | - | chr8_2:12562304-12562323 | Msa1234840:intron | 35.0% |
| ! | TCTTTCTTTAAAAGCGGACA+AGG | - | chr8_2:12562339-12562358 | Msa1234840:intron | 35.0% |
| CAAAGCAGGACTTTAGATAA+GGG | + | chr8_2:12562784-12562803 | None:intergenic | 35.0% | |
| !! | CAGTTGATAATTTCCAAAGC+AGG | + | chr8_2:12562798-12562817 | None:intergenic | 35.0% |
| CGACTATTATTTAGAGACAG+AGG | + | chr8_2:12563264-12563283 | None:intergenic | 35.0% | |
| ! | AGTCGTTTAAGGTTTATGCA+CGG | - | chr8_2:12563279-12563298 | Msa1234840:intron | 35.0% |
| AGTTAGTGGAGTAGTTAAGT+TGG | - | chr8_2:12563379-12563398 | Msa1234840:intron | 35.0% | |
| GCACAATGTGTTTACTAGTT+AGG | - | chr8_2:12563621-12563640 | Msa1234840:intron | 35.0% | |
| GAAAGCAACATAAAATGCGT+TGG | - | chr8_2:12563683-12563702 | Msa1234840:intron | 35.0% | |
| AAAGGAAAGGAGAATTACAG+CGG | - | chr8_2:12563896-12563915 | Msa1234840:intron | 35.0% | |
| AAATTAGCTCCTGCTTCTTT+GGG | + | chr8_2:12564050-12564069 | None:intergenic | 35.0% | |
| TGAGCTTGCACAGAATATTA+AGG | - | chr8_2:12564146-12564165 | Msa1234840:intron | 35.0% | |
| TCCTATTGAGGAGAAAAAAG+CGG | - | chr8_2:12564170-12564189 | Msa1234840:intron | 35.0% | |
| ! | GAGAATAATTTTGCCGTGTT+TGG | - | chr8_2:12564308-12564327 | Msa1234840:intron | 35.0% |
| CACAATGTGCAAATATACTC+AGG | + | chr8_2:12564659-12564678 | None:intergenic | 35.0% | |
| ! | TGCAAAGACAAGGAAAGTAT+CGG | - | chr8_2:12564696-12564715 | Msa1234840:intron | 35.0% |
| TGCTGTTAAATACCATTCGA+TGG | - | chr8_2:12564721-12564740 | Msa1234840:CDS | 35.0% | |
| TGACAAGTATATTGCAAGGT+TGG | - | chr8_2:12564856-12564875 | Msa1234840:five_prime_UTR | 35.0% | |
| GTATATTGCAAGGTTGGAAA+AGG | - | chr8_2:12564862-12564881 | Msa1234840:five_prime_UTR | 35.0% | |
| CTAACTAACCTGAAAGGTGA+AGG | + | chr8_2:12561458-12561477 | None:intergenic | 40.0% | |
| TAGCACTAGTTCATCAACCA+AGG | - | chr8_2:12561644-12561663 | Msa1234840:intron | 40.0% | |
| AGCACTAGTTCATCAACCAA+GGG | - | chr8_2:12561645-12561664 | Msa1234840:intron | 40.0% | |
| ! | TCATCAACCAAGGGCATATT+TGG | - | chr8_2:12561654-12561673 | Msa1234840:intron | 40.0% |
| AGTCAATCCAAATATGCCCT+TGG | + | chr8_2:12561664-12561683 | None:intergenic | 40.0% | |
| AGACTGTTTGAGAAAGCTTG+TGG | - | chr8_2:12561718-12561737 | Msa1234840:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | + | chr8_2:12561835-12561854 | None:intergenic | 40.0% | |
| TGTCAATTAAATTGGGACGG+AGG | - | chr8_2:12562025-12562044 | Msa1234840:CDS | 40.0% | |
| CAATGATACTCACATGAGGT+TGG | - | chr8_2:12562285-12562304 | Msa1234840:intron | 40.0% | |
| !! | CGGTTGGAATTTTAGAAGAC+CGG | + | chr8_2:12562393-12562412 | None:intergenic | 40.0% |
| TCTTTACTGAGTTTGGTCCT+TGG | - | chr8_2:12562621-12562640 | Msa1234840:intron | 40.0% | |
| ! | ATTTTCATCCCTAATGTGCG+AGG | + | chr8_2:12562730-12562749 | None:intergenic | 40.0% |
| CCAAAGCAGGACTTTAGATA+AGG | + | chr8_2:12562785-12562804 | None:intergenic | 40.0% | |
| ! | CCTTATCTAAAGTCCTGCTT+TGG | - | chr8_2:12562782-12562801 | Msa1234840:intron | 40.0% |
| CTGAAAATGGTTGCCTTATC+AGG | - | chr8_2:12562891-12562910 | Msa1234840:intron | 40.0% | |
| TTTGGCATGTCATCCTGATA+AGG | + | chr8_2:12562907-12562926 | None:intergenic | 40.0% | |
| TCGCAAGAAACAGCAATGAA+TGG | + | chr8_2:12562936-12562955 | None:intergenic | 40.0% | |
| GTTTCGGCTAAAGCTTTACA+AGG | + | chr8_2:12562982-12563001 | None:intergenic | 40.0% | |
| ! | GTCGTTTAAGGTTTATGCAC+GGG | - | chr8_2:12563280-12563299 | Msa1234840:intron | 40.0% |
| AGGTTTATGCACGGGTATTA+AGG | - | chr8_2:12563288-12563307 | Msa1234840:intron | 40.0% | |
| AGACAATTATTGTGAGACGG+AGG | - | chr8_2:12563505-12563524 | Msa1234840:intron | 40.0% | |
| GACAATTATTGTGAGACGGA+GGG | - | chr8_2:12563506-12563525 | Msa1234840:intron | 40.0% | |
| TAAACACATTGTGCTCTCAG+AGG | + | chr8_2:12563615-12563634 | None:intergenic | 40.0% | |
| !! | CCACATTTTAGTAAAAGCGC+CGG | + | chr8_2:12563788-12563807 | None:intergenic | 40.0% |
| ! | ATGGGAGCATAACTCAAAGT+GGG | + | chr8_2:12563988-12564007 | None:intergenic | 40.0% |
| ! | AATGGGAGCATAACTCAAAG+TGG | + | chr8_2:12563989-12564008 | None:intergenic | 40.0% |
| ! | ACTTTGAGTTATGCTCCCAT+TGG | - | chr8_2:12563988-12564007 | Msa1234840:intron | 40.0% |
| TATTGTTGACCCAAAGAAGC+AGG | - | chr8_2:12564038-12564057 | Msa1234840:intron | 40.0% | |
| GAAATTAGCTCCTGCTTCTT+TGG | + | chr8_2:12564051-12564070 | None:intergenic | 40.0% | |
| CAACGAGTGAAGAATTCACA+AGG | - | chr8_2:12564286-12564305 | Msa1234840:intron | 40.0% | |
| TCGAGCTGTTTATCCAAACA+CGG | + | chr8_2:12564324-12564343 | None:intergenic | 40.0% | |
| !! | GCAAAGACAAGGAAAGTATC+GGG | - | chr8_2:12564697-12564716 | Msa1234840:intron | 40.0% |
| AGATGGACAAAACCATCGAA+TGG | + | chr8_2:12564736-12564755 | None:intergenic | 40.0% | |
| ! | TTGTCCATCTCTGAAAGAGA+AGG | - | chr8_2:12564746-12564765 | Msa1234840:CDS | 40.0% |
| TTCTCCTTCTCTTTCAGAGA+TGG | + | chr8_2:12564753-12564772 | None:intergenic | 40.0% | |
| AAAGAGAAGGAGAAGACTCT+GGG | - | chr8_2:12564759-12564778 | Msa1234840:CDS | 40.0% | |
| ! | GGTTGTTGTTCTGTTCTGAG+AGG | + | chr8_2:12561334-12561353 | None:intergenic | 45.0% |
| AATTGAGGAAGTGGAGAGTG+AGG | + | chr8_2:12561417-12561436 | None:intergenic | 45.0% | |
| TTGGAGCAGAATTGAGGAAG+TGG | + | chr8_2:12561426-12561445 | None:intergenic | 45.0% | |
| ! | GTGTTGTTGGAGCAGAATTG+AGG | + | chr8_2:12561432-12561451 | None:intergenic | 45.0% |
| !! | AAGGTGAAGGTTGGTGTTGT+TGG | + | chr8_2:12561445-12561464 | None:intergenic | 45.0% |
| AACACCAACCTTCACCTTTC+AGG | - | chr8_2:12561447-12561466 | Msa1234840:intron | 45.0% | |
| CTAACCTGAAAGGTGAAGGT+TGG | + | chr8_2:12561454-12561473 | None:intergenic | 45.0% | |
| AAGCTATCTTGGAGAGCTCA+TGG | + | chr8_2:12561786-12561805 | None:intergenic | 45.0% | |
| TGAAAATGTGTGGTGTGGTG+TGG | - | chr8_2:12562235-12562254 | Msa1234840:CDS | 45.0% | |
| ACAGTTTGAGCAGTGAAGCA+CGG | + | chr8_2:12562413-12562432 | None:intergenic | 45.0% | |
| GCTTCACTGCTCAAACTGTA+AGG | - | chr8_2:12562414-12562433 | Msa1234840:intron | 45.0% | |
| ! | AGCTTTAGCCGAAACATGTG+AGG | - | chr8_2:12562987-12563006 | Msa1234840:intron | 45.0% |
| TTTAGCCGAAACATGTGAGG+CGG | - | chr8_2:12562990-12563009 | Msa1234840:intron | 45.0% | |
| GTTATCCGCCTCACATGTTT+CGG | + | chr8_2:12562998-12563017 | None:intergenic | 45.0% | |
| ! | CCGGCGCTTTTACTAAAATG+TGG | - | chr8_2:12563785-12563804 | Msa1234840:CDS | 45.0% |
| GCAATTACTCCAGATCAACG+CGG | - | chr8_2:12563927-12563946 | Msa1234840:intron | 45.0% | |
| ! | ATAACTCAAAGTGGGGGCAT+AGG | + | chr8_2:12563980-12563999 | None:intergenic | 45.0% |
| ! | TGGGAGCATAACTCAAAGTG+GGG | + | chr8_2:12563987-12564006 | None:intergenic | 45.0% |
| TTGAGTTATGCTCCCATTGG+TGG | - | chr8_2:12563991-12564010 | Msa1234840:intron | 45.0% | |
| !!! | GCCGCTTTTTTCTCCTCAAT+AGG | + | chr8_2:12564174-12564193 | None:intergenic | 45.0% |
| GGAGCTTCATTGCAAAGACA+AGG | - | chr8_2:12564686-12564705 | Msa1234840:intron | 45.0% | |
| GAAAGAGAAGGAGAAGACTC+TGG | - | chr8_2:12564758-12564777 | Msa1234840:CDS | 45.0% | |
| GCTGATTGTTACACTGAGCT+TGG | - | chr8_2:12564806-12564825 | Msa1234840:five_prime_UTR | 45.0% | |
| TTGGAGACCTTGAGAAAGCA+GGG | - | chr8_2:12564825-12564844 | Msa1234840:five_prime_UTR | 45.0% | |
| AGTATTGCCCTGCTTTCTCA+AGG | + | chr8_2:12564835-12564854 | None:intergenic | 45.0% | |
| !!! | TACTTTTAAATTTTTTATTA+CGG | - | chr8_2:12562757-12562776 | Msa1234840:intron | 5.0% |
| AATGAGAGCAATGGCGGTTG+TGG | - | chr8_2:12561365-12561384 | Msa1234840:CDS | 50.0% | |
| GTGAGGACGAGAGATGAAAC+AGG | + | chr8_2:12561400-12561419 | None:intergenic | 50.0% | |
| AACTTATACTCCCTCCGTCC+CGG | - | chr8_2:12561814-12561833 | Msa1234840:intron | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | + | chr8_2:12561831-12561850 | None:intergenic | 50.0% | |
| TTCTTTACCGGCACGCCTTA+TGG | - | chr8_2:12562187-12562206 | Msa1234840:CDS | 50.0% | |
| CTAGTTTCCATAAGGCGTGC+CGG | + | chr8_2:12562197-12562216 | None:intergenic | 50.0% | |
| TGGTGTGGTGTGGTGTGATA+TGG | - | chr8_2:12562245-12562264 | Msa1234840:CDS | 50.0% | |
| TTTGAGCAGTGAAGCACGGT+TGG | + | chr8_2:12562409-12562428 | None:intergenic | 50.0% | |
| TGACACTGCCTCGCACATTA+GGG | - | chr8_2:12562719-12562738 | Msa1234840:intron | 50.0% | |
| AGGGCTACTGCTAGCAGTAT+AGG | + | chr8_2:12563036-12563055 | None:intergenic | 50.0% | |
| TAGTACCTTACCTCCCACAG+TGG | + | chr8_2:12563067-12563086 | None:intergenic | 50.0% | |
| TTGGTCGCGAGACAAAGGAA+AGG | - | chr8_2:12563883-12563902 | Msa1234840:intron | 50.0% | |
| TCCAGATCAACGCGGCTTTA+AGG | - | chr8_2:12563935-12563954 | Msa1234840:intron | 50.0% | |
| ! | TCCTTAAAGCCGCGTTGATC+TGG | + | chr8_2:12563939-12563958 | None:intergenic | 50.0% |
| ! | GGGAGCATAACTCAAAGTGG+GGG | + | chr8_2:12563986-12564005 | None:intergenic | 50.0% |
| AGTTATGCTCCCATTGGTGG+TGG | - | chr8_2:12563994-12564013 | Msa1234840:intron | 50.0% | |
| GCTATCCTACCACCACCAAT+GGG | + | chr8_2:12564006-12564025 | None:intergenic | 50.0% | |
| !! | CATTGGTGGTGGTAGGATAG+CGG | - | chr8_2:12564005-12564024 | Msa1234840:intron | 50.0% |
| AACTCCGTGAACGCTCTATC+TGG | + | chr8_2:12564114-12564133 | None:intergenic | 50.0% | |
| AAAAAAGCGGCTCGAGGTCT+AGG | - | chr8_2:12564183-12564202 | Msa1234840:intron | 50.0% | |
| AAGCCTTAGCCCACTAAGTG+GGG | + | chr8_2:12564436-12564455 | None:intergenic | 50.0% | |
| CAAGCCTTAGCCCACTAAGT+GGG | + | chr8_2:12564437-12564456 | None:intergenic | 50.0% | |
| !! | TCTGGGAGCACAGAAGCTTT+TGG | - | chr8_2:12564776-12564795 | Msa1234840:CDS | 50.0% |
| !! | CTGGGAGCACAGAAGCTTTT+GGG | - | chr8_2:12564777-12564796 | Msa1234840:CDS | 50.0% |
| !! | TGGGAGCACAGAAGCTTTTG+GGG | - | chr8_2:12564778-12564797 | Msa1234840:CDS | 50.0% |
| CTTGGAGACCTTGAGAAAGC+AGG | - | chr8_2:12564824-12564843 | Msa1234840:five_prime_UTR | 50.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | + | chr8_2:12561827-12561846 | None:intergenic | 55.0% | |
| GTGACACTGCCTCGCACATT+AGG | - | chr8_2:12562718-12562737 | Msa1234840:intron | 55.0% | |
| CTGCTAGCAGTAGCCCTCAT+TGG | - | chr8_2:12563039-12563058 | Msa1234840:intron | 55.0% | |
| TCCCACAGTGGCTCCAATGA+GGG | + | chr8_2:12563055-12563074 | None:intergenic | 55.0% | |
| !! | TAGGGTTGGTCGCGAGACAA+AGG | - | chr8_2:12563878-12563897 | Msa1234840:intron | 55.0% |
| !! | ATGCTCCCATTGGTGGTGGT+AGG | - | chr8_2:12563998-12564017 | Msa1234840:intron | 55.0% |
| CGCTATCCTACCACCACCAA+TGG | + | chr8_2:12564007-12564026 | None:intergenic | 55.0% | |
| ! | GCAGCCAGATAGAGCGTTCA+CGG | - | chr8_2:12564107-12564126 | Msa1234840:intron | 55.0% |
| GAGGAGAAAAAAGCGGCTCG+AGG | - | chr8_2:12564177-12564196 | Msa1234840:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+GGG | + | chr8_2:12564424-12564443 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr8_2:12564424-12564443 | Msa1234840:intron | 55.0% | |
| CTTAGCCCACTAAGTGGGGT+CGG | + | chr8_2:12564432-12564451 | None:intergenic | 55.0% | |
| CCAAGCCTTAGCCCACTAAG+TGG | + | chr8_2:12564438-12564457 | None:intergenic | 55.0% | |
| !! | CCACTTAGTGGGCTAAGGCT+TGG | - | chr8_2:12564435-12564454 | Msa1234840:intron | 55.0% |
| GGTCAGTTATTCCGGGACGG+AGG | + | chr8_2:12561828-12561847 | None:intergenic | 60.0% | |
| AGCCCTCATTGGAGCCACTG+TGG | - | chr8_2:12563050-12563069 | Msa1234840:intron | 60.0% | |
| GCCCTCATTGGAGCCACTGT+GGG | - | chr8_2:12563051-12563070 | Msa1234840:intron | 60.0% | |
| CTCCCACAGTGGCTCCAATG+AGG | + | chr8_2:12563056-12563075 | None:intergenic | 60.0% | |
| CTCATTGGAGCCACTGTGGG+AGG | - | chr8_2:12563054-12563073 | Msa1234840:intron | 60.0% | |
| TGGAGCCACTGTGGGAGGTA+AGG | - | chr8_2:12563059-12563078 | Msa1234840:intron | 60.0% | |
| CACTAAGTGGGGTCGGCTAC+AGG | + | chr8_2:12564425-12564444 | None:intergenic | 60.0% | |
| CTGTAGCCGACCCCACTTAG+TGG | - | chr8_2:12564423-12564442 | Msa1234840:intron | 60.0% | |
| !! | CGACCCCACTTAGTGGGCTA+AGG | - | chr8_2:12564430-12564449 | Msa1234840:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 12561278 | 12564889 | 12561278 | ID=Msa1234840;Name=Msa1234840 |
| chr8_2 | mRNA | 12561278 | 12564889 | 12561278 | ID=Msa1234840-mRNA-1;Parent=Msa1234840;Name=Msa1234840-mRNA-1;_AED=0.17;_eAED=0.17;_QI=88|0.75|0.6|1|1|1|5|0|276 |
| chr8_2 | exon | 12561278 | 12561404 | 12561278 | ID=Msa1234840-mRNA-1:exon:4881;Parent=Msa1234840-mRNA-1 |
| chr8_2 | exon | 12561959 | 12562286 | 12561959 | ID=Msa1234840-mRNA-1:exon:4880;Parent=Msa1234840-mRNA-1 |
| chr8_2 | exon | 12563092 | 12563254 | 12563092 | ID=Msa1234840-mRNA-1:exon:4879;Parent=Msa1234840-mRNA-1 |
| chr8_2 | exon | 12563732 | 12563841 | 12563732 | ID=Msa1234840-mRNA-1:exon:4878;Parent=Msa1234840-mRNA-1 |
| chr8_2 | exon | 12564699 | 12564889 | 12564699 | ID=Msa1234840-mRNA-1:exon:4877;Parent=Msa1234840-mRNA-1 |
| chr8_2 | five_prime_UTR | 12564802 | 12564889 | 12564802 | ID=Msa1234840-mRNA-1:five_prime_utr;Parent=Msa1234840-mRNA-1 |
| chr8_2 | CDS | 12564699 | 12564801 | 12564699 | ID=Msa1234840-mRNA-1:cds;Parent=Msa1234840-mRNA-1 |
| chr8_2 | CDS | 12563732 | 12563841 | 12563732 | ID=Msa1234840-mRNA-1:cds;Parent=Msa1234840-mRNA-1 |
| chr8_2 | CDS | 12563092 | 12563254 | 12563092 | ID=Msa1234840-mRNA-1:cds;Parent=Msa1234840-mRNA-1 |
| chr8_2 | CDS | 12561959 | 12562286 | 12561959 | ID=Msa1234840-mRNA-1:cds;Parent=Msa1234840-mRNA-1 |
| chr8_2 | CDS | 12561278 | 12561404 | 12561278 | ID=Msa1234840-mRNA-1:cds;Parent=Msa1234840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
