AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1323560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323560 MtrunA17_Chr8g0356241 96.518 517 11 3 1 515 1 512 0.0 1021
Msa1323560 MtrunA17_Chr5g0438891 35.897 351 160 11 143 479 36 335 1.95e-54 188
Msa1323560 MtrunA17_Chr5g0438891 42.169 83 40 2 144 226 263 337 8.06e-11 63.9
Msa1323560 MtrunA17_Chr7g0249221 32.234 394 188 14 116 479 6 350 7.30e-48 171
Msa1323560 MtrunA17_Chr7g0249221 33.163 196 86 3 290 485 3 153 4.75e-27 113
Msa1323560 MtrunA17_Chr7g0249221 49.367 79 35 2 195 268 275 353 5.96e-18 86.3
Msa1323560 MtrunA17_Chr7g0249221 42.000 100 47 4 142 238 274 365 1.57e-13 72.4
Msa1323560 MtrunA17_Chr4g0058011 32.749 342 134 12 195 479 231 533 1.45e-45 168
Msa1323560 MtrunA17_Chr4g0058011 37.209 172 63 4 314 484 231 358 1.48e-25 110
Msa1323560 MtrunA17_Chr4g0058011 36.170 141 72 3 143 274 231 362 1.08e-21 98.6
Msa1323560 MtrunA17_Chr4g0058011 48.780 82 37 1 190 266 453 534 1.77e-18 88.6
Msa1323560 MtrunA17_Chr3g0116431 30.491 387 184 12 143 499 171 502 7.87e-42 156
Msa1323560 MtrunA17_Chr3g0116431 30.746 335 164 12 170 479 138 429 2.74e-30 124
Msa1323560 MtrunA17_Chr1g0195891 30.973 339 189 9 136 458 39 348 3.19e-41 151
Msa1323560 MtrunA17_Chr1g0195891 35.928 167 62 3 315 481 47 168 2.14e-23 101
Msa1323560 MtrunA17_Chr1g0195891 45.000 80 39 1 400 479 46 120 4.90e-15 76.6
Msa1323560 MtrunA17_Chr2g0286151 30.601 366 194 11 143 479 44 378 9.83e-38 144
Msa1323560 MtrunA17_Chr2g0286151 38.012 171 63 4 315 485 45 172 4.12e-27 114
Msa1323560 MtrunA17_Chr4g0066941 37.821 156 61 4 193 344 41 164 1.39e-26 113
Msa1323560 MtrunA17_Chr4g0066941 37.853 177 63 5 315 490 44 174 2.05e-25 109
Msa1323560 MtrunA17_Chr4g0066941 39.259 135 70 3 143 272 43 170 5.19e-25 108
Msa1323560 MtrunA17_Chr4g0066941 41.739 115 53 2 373 479 297 405 2.52e-18 87.8
Msa1323560 MtrunA17_Chr4g0066941 41.250 80 42 1 400 479 43 117 7.00e-17 83.6
Msa1323560 MtrunA17_Chr4g0066941 46.053 76 38 1 193 265 330 405 2.33e-15 78.6
Msa1323560 MtrunA17_Chr4g0066941 42.683 82 39 3 144 225 333 406 2.58e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323560 AT3G12680.1 52.140 514 194 13 15 502 37 524 2.46e-175 504
Msa1323560 AT3G12680.1 30.729 192 91 4 315 506 172 321 2.85e-20 94.4
Msa1323560 AT5G16540.3 35.987 314 137 7 194 479 17 294 4.05e-60 202
Msa1323560 AT5G16540.3 33.436 326 131 8 143 430 18 295 2.77e-44 160
Msa1323560 AT5G16540.3 30.890 191 87 4 315 505 19 164 2.74e-25 107
Msa1323560 AT5G16540.3 44.828 87 42 2 393 479 12 92 3.63e-17 83.6
Msa1323560 AT5G16540.3 45.055 91 37 3 139 224 212 294 1.77e-14 75.5
Msa1323560 AT5G16540.1 35.987 314 137 7 194 479 38 315 4.86e-60 202
Msa1323560 AT5G16540.1 33.436 326 131 8 143 430 39 316 3.72e-44 160
Msa1323560 AT5G16540.1 30.890 191 87 4 315 505 40 185 2.68e-25 107
Msa1323560 AT5G16540.1 33.088 136 67 3 344 479 2 113 2.97e-17 84.0
Msa1323560 AT5G16540.1 45.055 91 37 3 139 224 233 315 1.91e-14 75.5
Msa1323560 AT2G47850.1 33.983 359 130 10 192 479 39 361 3.99e-56 195
Msa1323560 AT2G47850.1 38.636 176 61 3 307 481 35 164 7.77e-29 119
Msa1323560 AT2G47850.1 44.330 97 49 2 383 479 25 116 1.97e-20 94.7
Msa1323560 AT2G47850.1 51.220 82 35 2 189 265 280 361 3.98e-18 87.4
Msa1323560 AT2G47850.3 33.983 359 130 10 192 479 39 361 3.99e-56 195
Msa1323560 AT2G47850.3 38.636 176 61 3 307 481 35 164 7.77e-29 119
Msa1323560 AT2G47850.3 44.330 97 49 2 383 479 25 116 1.97e-20 94.7
Msa1323560 AT2G47850.3 51.220 82 35 2 189 265 280 361 3.98e-18 87.4
Msa1323560 AT3G02830.2 33.705 359 134 10 188 479 5 326 8.40e-55 189
Msa1323560 AT3G02830.2 32.821 195 86 3 301 495 4 153 3.66e-28 116
Msa1323560 AT3G02830.2 40.426 141 60 4 135 266 13 138 1.06e-27 114
Msa1323560 AT3G02830.2 30.925 346 155 13 143 456 62 355 1.39e-27 114
Msa1323560 AT3G02830.2 41.667 132 54 5 190 298 245 376 3.28e-19 90.1
Msa1323560 AT3G02830.2 45.055 91 37 3 139 224 244 326 2.75e-14 75.1
Msa1323560 AT3G02830.1 33.705 359 134 10 188 479 25 346 9.57e-55 189
Msa1323560 AT3G02830.1 38.182 165 77 5 111 266 10 158 1.34e-28 117
Msa1323560 AT3G02830.1 32.500 200 90 3 296 495 19 173 1.95e-28 117
Msa1323560 AT3G02830.1 30.925 346 155 13 143 456 82 375 1.14e-27 115
Msa1323560 AT3G02830.1 41.667 132 54 5 190 298 265 396 3.31e-19 90.1
Msa1323560 AT3G02830.1 45.055 91 37 3 139 224 264 346 2.37e-14 75.5
Msa1323560 AT5G16540.2 34.713 314 134 8 194 479 38 308 1.04e-54 188
Msa1323560 AT5G16540.2 32.209 326 128 8 143 430 39 309 3.50e-40 149
Msa1323560 AT5G16540.2 32.402 179 76 4 315 493 40 173 2.25e-25 107
Msa1323560 AT5G16540.2 33.088 136 67 3 344 479 2 113 2.39e-17 84.3
Msa1323560 AT5G16540.4 34.722 288 124 7 194 453 17 268 6.32e-49 170
Msa1323560 AT5G16540.4 35.458 251 116 6 143 355 18 260 2.17e-37 139
Msa1323560 AT5G16540.4 30.890 191 87 4 315 505 19 164 1.37e-25 106
Msa1323560 AT5G16540.4 44.828 87 42 2 393 479 12 92 2.37e-17 82.8
Msa1323560 AT3G48440.1 34.493 345 185 11 142 478 106 417 3.70e-47 170
Msa1323560 AT3G48440.1 36.471 170 66 3 315 484 108 235 7.56e-27 113
Msa1323560 AT2G47850.2 34.286 315 162 9 192 479 39 335 3.76e-46 167
Msa1323560 AT2G47850.2 44.330 97 49 2 383 479 25 116 1.20e-20 95.1
Msa1323560 AT2G47850.2 51.220 82 35 2 189 265 254 335 2.59e-18 87.8
Msa1323560 AT2G47850.2 41.509 106 47 4 143 243 260 355 8.53e-14 73.9
Msa1323560 AT5G18550.3 31.302 361 185 15 143 478 16 338 4.86e-44 161
Msa1323560 AT5G18550.3 37.195 164 68 3 193 351 14 147 9.83e-33 130
Msa1323560 AT5G18550.3 34.706 170 68 4 314 482 16 143 3.49e-24 105
Msa1323560 AT5G18550.1 31.476 359 187 15 143 478 48 370 5.30e-44 162
Msa1323560 AT5G18550.1 37.195 164 68 3 193 351 46 179 8.28e-33 130
Msa1323560 AT5G18550.1 34.706 170 68 4 314 482 48 175 2.56e-24 106
Msa1323560 AT5G18550.4 31.476 359 187 15 143 478 48 370 6.75e-44 161
Msa1323560 AT5G18550.4 37.195 164 68 3 193 351 46 179 9.62e-33 130
Msa1323560 AT5G18550.4 34.706 170 68 4 314 482 48 175 3.23e-24 105
Msa1323560 AT2G32930.3 32.353 340 182 8 143 478 14 309 1.59e-42 157
Msa1323560 AT2G32930.3 37.725 167 57 5 315 481 15 134 2.04e-28 117
Msa1323560 AT2G32930.3 42.500 80 40 1 400 479 14 87 4.00e-16 80.9
Msa1323560 AT1G04990.1 32.012 328 140 10 196 479 45 333 2.06e-42 156
Msa1323560 AT1G04990.1 46.043 139 57 5 135 266 35 162 4.62e-31 125
Msa1323560 AT1G04990.1 36.527 167 58 2 315 481 45 163 4.47e-28 116
Msa1323560 AT1G04990.1 43.750 80 38 1 400 479 44 116 8.06e-17 82.8
Msa1323560 AT1G04990.1 39.241 79 42 1 149 227 264 336 3.60e-11 65.5
Msa1323560 AT1G04990.6 32.012 328 140 10 196 479 45 333 2.06e-42 156
Msa1323560 AT1G04990.6 46.043 139 57 5 135 266 35 162 4.62e-31 125
Msa1323560 AT1G04990.6 36.527 167 58 2 315 481 45 163 4.47e-28 116
Msa1323560 AT1G04990.6 43.750 80 38 1 400 479 44 116 8.06e-17 82.8
Msa1323560 AT1G04990.6 39.241 79 42 1 149 227 264 336 3.60e-11 65.5
Msa1323560 AT1G04990.2 32.012 328 140 10 196 479 45 333 2.06e-42 156
Msa1323560 AT1G04990.2 46.043 139 57 5 135 266 35 162 4.62e-31 125
Msa1323560 AT1G04990.2 36.527 167 58 2 315 481 45 163 4.47e-28 116
Msa1323560 AT1G04990.2 43.750 80 38 1 400 479 44 116 8.06e-17 82.8
Msa1323560 AT1G04990.2 39.241 79 42 1 149 227 264 336 3.60e-11 65.5
Msa1323560 AT2G32930.2 32.353 340 182 8 143 478 41 336 2.31e-42 157
Msa1323560 AT2G32930.2 35.500 200 82 5 282 481 9 161 4.71e-29 120
Msa1323560 AT5G63260.1 29.478 441 241 15 62 481 17 408 9.91e-41 152
Msa1323560 AT5G63260.1 33.529 170 70 5 315 484 99 225 3.04e-23 102
Msa1323560 AT5G63260.1 40.594 101 53 3 193 288 329 427 3.59e-14 75.1
Msa1323560 AT5G63260.2 29.490 451 244 16 62 481 17 424 4.66e-40 150
Msa1323560 AT5G63260.2 34.118 170 85 6 315 484 99 241 3.59e-24 105
Msa1323560 AT5G63260.2 40.594 101 53 3 193 288 345 443 4.00e-14 75.1
Msa1323560 AT5G18550.2 30.084 359 179 15 143 478 48 357 3.05e-39 149
Msa1323560 AT5G18550.2 37.195 164 68 3 193 351 46 179 7.82e-33 130
Msa1323560 AT5G18550.2 34.706 170 68 4 314 482 48 175 2.34e-24 106
Msa1323560 AT1G04990.5 30.183 328 126 9 196 479 45 313 2.01e-38 145
Msa1323560 AT1G04990.5 46.043 139 57 5 135 266 35 162 2.63e-31 125
Msa1323560 AT1G04990.5 36.527 167 58 2 315 481 45 163 3.49e-28 116
Msa1323560 AT1G04990.5 43.750 80 38 1 400 479 44 116 6.89e-17 83.2
Msa1323560 AT2G32930.1 31.471 340 181 9 143 478 41 332 4.80e-38 145
Msa1323560 AT2G32930.1 35.000 200 79 6 282 481 9 157 2.68e-25 108
Msa1323560 AT3G06410.1 36.646 161 67 3 193 348 49 179 1.16e-30 124
Msa1323560 AT3G06410.1 39.416 137 66 3 143 270 51 179 1.98e-25 109
Msa1323560 AT3G06410.1 36.310 168 63 5 315 481 52 176 1.03e-23 104
Msa1323560 AT3G06410.1 38.525 122 65 3 357 478 267 378 1.15e-18 89.0
Msa1323560 AT3G06410.1 41.250 80 43 1 400 479 51 126 8.31e-18 86.7
Msa1323560 AT3G06410.1 42.308 78 40 2 192 264 301 378 4.77e-13 71.6
Msa1323560 AT3G06410.1 30.000 170 84 6 59 223 239 378 2.35e-12 69.7
Msa1323560 AT2G47850.4 32.510 243 90 8 307 479 1 239 6.86e-29 117
Msa1323560 AT2G47850.4 52.564 78 32 2 193 265 162 239 1.07e-18 87.8
Msa1323560 AT2G47850.4 41.509 106 47 4 143 243 164 259 3.38e-14 74.3
Msa1323560 AT1G04990.3 29.455 275 113 8 247 479 17 252 7.58e-27 111
Msa1323560 AT1G04990.3 47.368 76 35 1 406 481 12 82 2.79e-17 83.6
Msa1323560 AT1G04990.3 49.254 67 26 2 206 266 17 81 1.72e-13 72.0
Msa1323560 AT1G04990.3 39.241 79 42 1 149 227 183 255 1.65e-11 65.9
Msa1323560 AT1G04990.4 47.368 76 35 1 406 481 12 82 2.40e-17 83.2
Msa1323560 AT1G04990.4 49.254 67 26 2 206 266 17 81 1.55e-13 72.0
Msa1323560 AT1G48195.1 45.570 79 39 1 400 478 6 80 1.11e-16 75.5
Msa1323560 AT1G48195.1 42.308 78 40 2 192 264 3 80 1.55e-12 63.5

Find 180 sgRNAs with CRISPR-Local

Find 450 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGAAAATGCCGATGTTTC+TGG 0.134629 8_4:-31995141 Msa1323560:CDS
AAATCTGGCATATGTAAATT+TGG 0.142400 8_4:-31993338 Msa1323560:CDS
GCAAGTTCGATCATCCTATT+TGG 0.183299 8_4:-31996810 Msa1323560:CDS
GTTTCACTTGGAACAATATT+TGG 0.192357 8_4:+31995359 None:intergenic
GGCGACGGCGGCAGCGGCGG+AGG 0.196569 8_4:+31998828 None:intergenic
TGCATTGGGCCCTTCTGTTT+TGG 0.222475 8_4:-31994247 Msa1323560:CDS
CTAACAAGAACCTGTAAATT+TGG 0.229682 8_4:-31996841 Msa1323560:CDS
GATTGGTATCAGTGCTTATT+TGG 0.237137 8_4:-31992535 Msa1323560:three_prime_UTR
GCACTTCCGGTTTCATATCT+AGG 0.247042 8_4:+31996916 None:intergenic
CAGTCTCAGGTGGGAGTAAC+AGG 0.258392 8_4:-31993802 Msa1323560:CDS
CCTGGCCTCTGTGGATAAAT+AGG 0.260125 8_4:+31996889 None:intergenic
GCAGCTCTCTCCAAATTTAC+AGG 0.264926 8_4:+31996831 None:intergenic
TTGTATTCGGGTCGTAATAT+TGG 0.270832 8_4:+31998989 None:intergenic
GGAAGCAGCGGCGGCGGCTT+CGG 0.278346 8_4:+31998939 None:intergenic
TGCAGATACAGGTGGATTAA+TGG 0.293107 8_4:+31994266 None:intergenic
AATCTGGCATATGTAAATTT+GGG 0.314408 8_4:-31993337 Msa1323560:CDS
ATGTAGTTCTACTTGAAAAC+TGG 0.326854 8_4:-31994870 Msa1323560:intron
AGCAGCGGCGACGGCGGCAG+CGG 0.330670 8_4:+31998822 None:intergenic
AGCAAACATACCTCTCTTCT+TGG 0.333259 8_4:+31993227 None:intergenic
CCACCCGCAGGAACCCAAAT+AGG 0.335891 8_4:+31996796 None:intergenic
GCAGTAAGTTTAACATTTGA+TGG 0.341189 8_4:+31993260 None:intergenic
AGCGGCGACGGCGGCAGCGG+CGG 0.341849 8_4:+31998825 None:intergenic
TTGCCCAATTGTGCTCAAAA+TGG 0.342263 8_4:+31996978 None:intergenic
ACAAATTCTTCTGTGTTTGA+TGG 0.349596 8_4:-31994750 Msa1323560:CDS
TGTATTCGGGTCGTAATATT+GGG 0.368508 8_4:+31998990 None:intergenic
TCTGTGTTTGATGGGGCAAT+AGG 0.371334 8_4:-31994741 Msa1323560:CDS
CAAGTTCGATCATCCTATTT+GGG 0.377080 8_4:-31996809 Msa1323560:CDS
TGAGCGAGGAACATTGTATT+CGG 0.381260 8_4:+31998976 None:intergenic
TGTCCATTCTACATGAAAAC+TGG 0.383033 8_4:-31994520 Msa1323560:CDS
AAAACTGCAACGTGCAAGTT+TGG 0.385103 8_4:-31992816 Msa1323560:CDS
ATGCAGTTCTATATGAAATC+TGG 0.398754 8_4:-31993353 Msa1323560:intron
CAAATTCTTCTGTGTTTGAT+GGG 0.399035 8_4:-31994749 Msa1323560:CDS
ATAGTCACCTCTTTCCAATC+TGG 0.401312 8_4:+31996769 None:intergenic
AATGTTAAACTTACTGCTGC+AGG 0.401933 8_4:-31993254 Msa1323560:CDS
AGGTTCTTGTTAGCATATAG+TGG 0.401971 8_4:+31996851 None:intergenic
AATCATCAGATAATTGAATC+TGG 0.404625 8_4:+31994799 None:intergenic
ATAAATAGGCAAAGCACTTC+CGG 0.406824 8_4:+31996903 None:intergenic
GCGACGGCGGCAGCGGCGGA+GGG 0.408489 8_4:+31998829 None:intergenic
TTTAGTGGCAAATTTCTCTC+TGG 0.411861 8_4:-31992557 Msa1323560:three_prime_UTR
AATTGAATCTGGATATCCTT+GGG 0.412002 8_4:+31994810 None:intergenic
GGTCTCCGTTTCTCCTCCAT+TGG 0.417479 8_4:+31992719 None:intergenic
GCCACTAAAGAAAGTAAAAC+AGG 0.418963 8_4:+31992571 None:intergenic
GTGTCAATCTCATGTTGAAT+TGG 0.422955 8_4:+31999136 None:intergenic
AGTGATGTTGTGCGGTCGAT+TGG 0.423384 8_4:+31993293 None:intergenic
ATCTGGTTCTCCAGGTCTCT+CGG 0.423563 8_4:+31995331 None:intergenic
TTTGTGTCTGCTCAACATTA+CGG 0.425536 8_4:+31994772 None:intergenic
ATTCTACTCACTGGACAATC+TGG 0.428937 8_4:+31995314 None:intergenic
TCGGGTCGTAATATTGGGTC+GGG 0.433275 8_4:+31998995 None:intergenic
AAGAGGATGTGTTGTAGATT+CGG 0.436282 8_4:+31999055 None:intergenic
AGCAGCGGCGGCGGCTTCGG+CGG 0.439320 8_4:+31998942 None:intergenic
GATGGAGGAAGCAGCGGCGG+CGG 0.441417 8_4:+31998933 None:intergenic
GCATGATCTCAATATTGTTC+CGG 0.445718 8_4:+31992672 None:intergenic
CGACGGCGGCAGCGGCGGAG+GGG 0.446303 8_4:+31998830 None:intergenic
TAGTTGACCATAACTTTCAT+AGG 0.446953 8_4:+31992504 None:intergenic
GATTTCGACATTGCTCCTCC+TGG 0.447120 8_4:-31998898 Msa1323560:CDS
GAATCTCCACCACTAATCCT+TGG 0.448603 8_4:-31998864 Msa1323560:CDS
TGGCAAATTTCTCTCTGGAT+TGG 0.449368 8_4:-31992552 Msa1323560:three_prime_UTR
TCCATCACTTCTCCTGGTGG+TGG 0.452773 8_4:+31992771 None:intergenic
GGGATGATTGTAGCGGCAAC+TGG 0.453434 8_4:+31994377 None:intergenic
ATATAAATCAGTTGCAAGTT+CGG 0.454222 8_4:-31994402 Msa1323560:intron
GCCATCTCCATCACTTCTCC+TGG 0.459226 8_4:+31992765 None:intergenic
CCCCAGTCTGTCAAATCAAA+TGG 0.460790 8_4:-31994157 Msa1323560:intron
TACCATTTGATTTGACAGAC+TGG 0.462436 8_4:+31994155 None:intergenic
CTCTCGGGAAGAGTTTCACT+TGG 0.463041 8_4:+31995347 None:intergenic
TAGTCACCTCTTTCCAATCT+GGG 0.465457 8_4:+31996770 None:intergenic
TCCTCTTACAACATCCCAAC+CGG 0.466266 8_4:-31999039 Msa1323560:CDS
AGGAGGAGCAATGTCGAAAT+CGG 0.468141 8_4:+31998900 None:intergenic
CCTATTTATCCACAGAGGCC+AGG 0.470161 8_4:-31996889 Msa1323560:CDS
TAATCCACCTGTATCTGCAT+TGG 0.473899 8_4:-31994262 Msa1323560:CDS
TCACTTCTCCTGGTGGTGGA+TGG 0.473906 8_4:+31992775 None:intergenic
CATCCTATTTGGGTTCCTGC+GGG 0.475897 8_4:-31996799 Msa1323560:CDS
CGGCGGCGGCTTCGGCGGTG+CGG 0.478211 8_4:+31998947 None:intergenic
AATCCACCTGTATCTGCATT+GGG 0.479236 8_4:-31994261 Msa1323560:CDS
CACTTCCGGTTTCATATCTA+GGG 0.479802 8_4:+31996917 None:intergenic
TAATTGAATCTGGATATCCT+TGG 0.480053 8_4:+31994809 None:intergenic
GAAGGGCCCAATGCAGATAC+AGG 0.480321 8_4:+31994255 None:intergenic
TGGGTCGGGGATGTAGTTGA+TGG 0.482330 8_4:+31999009 None:intergenic
GAGCGAGGAACATTGTATTC+GGG 0.483277 8_4:+31998977 None:intergenic
TCTGGTTCTCCAGGTCTCTC+GGG 0.484418 8_4:+31995332 None:intergenic
AAAACTGGAAAATGTAAATA+CGG 0.484664 8_4:-31994855 Msa1323560:CDS
AAGAAGATGAATGAGATATG+AGG 0.493320 8_4:+31999181 None:intergenic
GGCAACATTTGTTGCAGCAG+CGG 0.493720 8_4:+31998807 None:intergenic
TCTGGATATCCTTGGGGTGA+TGG 0.494056 8_4:+31994817 None:intergenic
TGGGCACAATCCTTCTCTCC+TGG 0.495065 8_4:+31996871 None:intergenic
TCCACAGAGGCCAGGAGAGA+AGG 0.496505 8_4:-31996881 Msa1323560:CDS
AAATGAGAAAAGGATGGTAT+TGG 0.498703 8_4:+31999111 None:intergenic
ACATCACATTCAATCTGTCC+AGG 0.499616 8_4:+31993760 None:intergenic
AAATGTGCCTGGTTCTGCTC+CGG 0.499853 8_4:-31992691 Msa1323560:CDS
CACTGTCGCATAATAGCAAA+GGG 0.501308 8_4:-31994686 Msa1323560:CDS
CTGCGGGTGGAATCCCAGAT+TGG 0.502089 8_4:-31996783 Msa1323560:CDS
ATTTGTTGCAGCAGCGGCGA+CGG 0.503060 8_4:+31998813 None:intergenic
ACTATCTATCCTCAGCGCCC+TGG 0.504341 8_4:-31993778 Msa1323560:CDS
AATCTCCACCACTAATCCTT+GGG 0.505009 8_4:-31998863 Msa1323560:CDS
GTTGAGGATGCCAAAACAGA+AGG 0.505363 8_4:+31994237 None:intergenic
AGCATTCGCCCAAGGATTAG+TGG 0.507557 8_4:+31998855 None:intergenic
TACAACCAATGGAGGAGAAA+CGG 0.511068 8_4:-31992724 Msa1323560:CDS
CAAAGGGCTTCCTGTGAGAC+CGG 0.513415 8_4:-31994670 Msa1323560:intron
AAAATTAATACCGGTCTCAC+AGG 0.514093 8_4:+31994660 None:intergenic
ACTGGACAATCTGGTTCTCC+AGG 0.515598 8_4:+31995323 None:intergenic
GTGATGTTGTGCGGTCGATT+GGG 0.517527 8_4:+31993294 None:intergenic
ATTTGGTTTCCAGTCTCAGG+TGG 0.521933 8_4:-31993812 Msa1323560:intron
GAAACTCTTCCCGAGAGACC+TGG 0.522394 8_4:-31995341 Msa1323560:CDS
TGGCTTACCTGAGAGGCCAC+AGG 0.523921 8_4:-31995121 Msa1323560:CDS
TGTTGCAGCAGCGGCGACGG+CGG 0.524901 8_4:+31998816 None:intergenic
TTGATGGAGCTGCTCCGGTT+GGG 0.526218 8_4:+31999025 None:intergenic
AAGATCAAGTGAAGCGGCAG+AGG 0.526225 8_4:+31998786 None:intergenic
ACCATTTGATTTGACAGACT+GGG 0.526424 8_4:+31994156 None:intergenic
GAGATTCTAGACGCAACTCC+AGG 0.526633 8_4:+31998880 None:intergenic
TACAATCATCCCGACATGAA+TGG 0.526779 8_4:-31994366 Msa1323560:intron
TTCGGGTCGTAATATTGGGT+CGG 0.526786 8_4:+31998994 None:intergenic
ATCAATATCTAACCGCGCAA+GGG 0.527350 8_4:+31995094 None:intergenic
GATCAATATCTAACCGCGCA+AGG 0.527839 8_4:+31995093 None:intergenic
TAGTTGACCTATGAAAGTTA+TGG 0.532855 8_4:-31992511 Msa1323560:three_prime_UTR
CCTATTTGGGTTCCTGCGGG+TGG 0.532997 8_4:-31996796 Msa1323560:CDS
GTTGATGGAGCTGCTCCGGT+TGG 0.533982 8_4:+31999024 None:intergenic
TGTAGTTGATGGAGCTGCTC+CGG 0.534275 8_4:+31999020 None:intergenic
AAGCGCCCTAGATATGAAAC+CGG 0.536130 8_4:-31996922 Msa1323560:CDS
TCAGAGAAATGAGAAAAGGA+TGG 0.536567 8_4:+31999105 None:intergenic
GGTTTCATATCTAGGGCGCT+TGG 0.536573 8_4:+31996924 None:intergenic
TTGGTATACGTCGAACTCAC+TGG 0.538046 8_4:-31996947 Msa1323560:CDS
CAATTGGGCAAAACGAAGCT+TGG 0.543027 8_4:-31996966 Msa1323560:CDS
TATTGTTCCGGAGCAGAACC+AGG 0.544228 8_4:+31992684 None:intergenic
GATCTTAAACGCTCTTCTGA+TGG 0.548162 8_4:-31998769 Msa1323560:intron
TCCTTCTCTCCTGGCCTCTG+TGG 0.551115 8_4:+31996880 None:intergenic
TTGTGCGGTCGATTGGGTGA+TGG 0.553158 8_4:+31993300 None:intergenic
TCATCCTATTTGGGTTCCTG+CGG 0.562825 8_4:-31996800 Msa1323560:CDS
TGCGACAGTGGAGATATAAG+AGG 0.563819 8_4:+31994699 None:intergenic
AGTATACATACCATTCATGT+CGG 0.563857 8_4:+31994356 None:intergenic
ATCTCCATCACTTCTCCTGG+TGG 0.569723 8_4:+31992768 None:intergenic
CAAGGAGCTTCTACAACCAA+TGG 0.571919 8_4:-31992735 Msa1323560:CDS
CCACTGTCGCATAATAGCAA+AGG 0.572283 8_4:-31994687 Msa1323560:CDS
GTATACATACCATTCATGTC+GGG 0.573737 8_4:+31994357 None:intergenic
TTTGGTTTCCAGTCTCAGGT+GGG 0.575186 8_4:-31993811 Msa1323560:intron
TGAGAAAAGGATGGTATTGG+TGG 0.575776 8_4:+31999114 None:intergenic
TCAACTGCTAATCTTAACAT+TGG 0.576947 8_4:-31994219 Msa1323560:CDS
TGTCGAAATCGGAGGAGTAG+CGG 0.577021 8_4:+31998911 None:intergenic
GGTTCTTGTTAGCATATAGT+GGG 0.577333 8_4:+31996852 None:intergenic
AAATTCTTCTGTGTTTGATG+GGG 0.579820 8_4:-31994748 Msa1323560:CDS
TCCACCACCAGGAGAAGTGA+TGG 0.581801 8_4:-31992772 Msa1323560:CDS
GAGACCAACGAAAATGTGCC+TGG 0.584891 8_4:-31992702 Msa1323560:CDS
GAGGGGAAAGCATTCGCCCA+AGG 0.587222 8_4:+31998847 None:intergenic
ATCGGAGGAGTAGCGGATGG+AGG 0.587976 8_4:+31998918 None:intergenic
TCAATATCTAACCGCGCAAG+GGG 0.589144 8_4:+31995095 None:intergenic
ATGTTTCTGGCTTACCTGAG+AGG 0.592119 8_4:-31995128 Msa1323560:CDS
ATGTTAAACTTACTGCTGCA+GGG 0.593446 8_4:-31993253 Msa1323560:CDS
TCCGGTTGGGATGTTGTAAG+AGG 0.594805 8_4:+31999038 None:intergenic
AAATTTGACCATCCACCACC+AGG 0.594941 8_4:-31992783 Msa1323560:CDS
ATCTGGCATATGTAAATTTG+GGG 0.597625 8_4:-31993336 Msa1323560:CDS
CTCAGGTAAGCCAGAAACAT+CGG 0.599049 8_4:+31995131 None:intergenic
GCGGATGGAGGAAGCAGCGG+CGG 0.603426 8_4:+31998930 None:intergenic
CAATCTGGGATTCCACCCGC+AGG 0.605325 8_4:+31996784 None:intergenic
GTAGCGGATGGAGGAAGCAG+CGG 0.608163 8_4:+31998927 None:intergenic
CATTCTACATGAAAACTGGA+AGG 0.612306 8_4:-31994516 Msa1323560:intron
GCGTTTAAGATCAAGTGAAG+CGG 0.617066 8_4:+31998780 None:intergenic
CCAATTGTGCTCAAAATGGA+TGG 0.619401 8_4:+31996982 None:intergenic
TGGAATCCCAGATTGGAAAG+AGG 0.624036 8_4:-31996776 Msa1323560:intron
AATGTTAAGATTAGCAGTTG+AGG 0.624435 8_4:+31994221 None:intergenic
CCATTTGATTTGACAGACTG+GGG 0.625130 8_4:+31994157 None:intergenic
GAAATCGGAGGAGTAGCGGA+TGG 0.628796 8_4:+31998915 None:intergenic
TTGAGGATGCCAAAACAGAA+GGG 0.630617 8_4:+31994238 None:intergenic
TTGTGCTCAAAATGGATGGA+TGG 0.638940 8_4:+31996986 None:intergenic
ATGGAGATGGCTAAGTCACA+AGG 0.639872 8_4:-31992753 Msa1323560:CDS
GGGCCCAATGCAGATACAGG+TGG 0.641282 8_4:+31994258 None:intergenic
ACCAGGAGAAGTGATGGAGA+TGG 0.642505 8_4:-31992766 Msa1323560:CDS
CATCACATTCAATCTGTCCA+GGG 0.642800 8_4:+31993761 None:intergenic
TCAATCTGTCCAGGGCGCTG+AGG 0.644841 8_4:+31993769 None:intergenic
CGGGTCGTAATATTGGGTCG+GGG 0.646912 8_4:+31998996 None:intergenic
AGGAGCAATGTCGAAATCGG+AGG 0.653515 8_4:+31998903 None:intergenic
AGTCTCAGGTGGGAGTAACA+GGG 0.654906 8_4:-31993801 Msa1323560:CDS
TGCAGGGTTACCAAGAAGAG+AGG 0.662159 8_4:-31993237 Msa1323560:intron
ATTGAATCTGGATATCCTTG+GGG 0.664522 8_4:+31994811 None:intergenic
GGAGCTTCTACAACCAATGG+AGG 0.668592 8_4:-31992732 Msa1323560:CDS
TCATGTCGGGATGATTGTAG+CGG 0.682500 8_4:+31994370 None:intergenic
CTTTGCCTATTTATCCACAG+AGG 0.683948 8_4:-31996894 Msa1323560:CDS
ATGCAAATTCCATCACCCCA+AGG 0.686683 8_4:-31994826 Msa1323560:CDS
ACATGTAATGAAATAAAACA+AGG 0.695091 8_4:+31992616 None:intergenic
ATTCTAGACGCAACTCCAGG+AGG 0.695785 8_4:+31998883 None:intergenic
ATTCGCCCAAGGATTAGTGG+TGG 0.702300 8_4:+31998858 None:intergenic
CCTTTGCTATTATGCGACAG+TGG 0.707348 8_4:+31994687 None:intergenic
CAATATCTAACCGCGCAAGG+GGG 0.713052 8_4:+31995096 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAAAAAGCATAAAA+TGG - chr8_4:31992489-31992508 Msa1323560:three_prime_UTR 10.0%
!! TTCTTCAAAAAAATTAAATT+AGG - chr8_4:31993643-31993662 Msa1323560:intron 10.0%
!! TATTATTTCAAAATATATAC+CGG + chr8_4:31993854-31993873 None:intergenic 10.0%
!! TGAATTCTTAAATATATAAT+TGG - chr8_4:31996288-31996307 Msa1323560:intron 10.0%
!! TAATTAAATAGAAATGTAAA+AGG + chr8_4:31998341-31998360 None:intergenic 10.0%
!! ACATAAAATCAATTTATTAA+TGG + chr8_4:31998571-31998590 None:intergenic 10.0%
!! AAAATAAAAACCATAACAAA+TGG - chr8_4:31992638-31992657 Msa1323560:three_prime_UTR 15.0%
!! TAATTGTTGAATTAAATGAT+TGG - chr8_4:31993188-31993207 Msa1323560:intron 15.0%
!!! TCATTTTCTAAAATTATTAC+TGG + chr8_4:31993371-31993390 None:intergenic 15.0%
!! GTTATTTATATAACGAAAAT+AGG - chr8_4:31993747-31993766 Msa1323560:intron 15.0%
!! TGATGAAGAAAAAAAAAAAT+TGG - chr8_4:31993885-31993904 Msa1323560:intron 15.0%
!! GATGAAGAAAAAAAAAAATT+GGG - chr8_4:31993886-31993905 Msa1323560:intron 15.0%
!! ATGAAGAAAAAAAAAAATTG+GGG - chr8_4:31993887-31993906 Msa1323560:intron 15.0%
!!! GTAAAAGTATTATTAAATAG+TGG + chr8_4:31994191-31994210 None:intergenic 15.0%
!!! TTTTACTTAATAGCATTTTA+CGG - chr8_4:31994205-31994224 Msa1323560:CDS 15.0%
!!! CATTATTTATAAATTTGCTT+TGG - chr8_4:31994669-31994688 Msa1323560:intron 15.0%
!! AAGCATATATGAATATATAA+TGG - chr8_4:31995066-31995085 Msa1323560:intron 15.0%
!!! GTATAACATATTTAGATTTT+TGG - chr8_4:31995829-31995848 Msa1323560:intron 15.0%
!! ATTTAAGAATTCAAATTTCT+AGG + chr8_4:31996281-31996300 None:intergenic 15.0%
!!! TTGATTTCTGTTTAATTTTA+TGG - chr8_4:31997262-31997281 Msa1323560:intron 15.0%
!! TTAAAACAAATTAATGTTTC+AGG - chr8_4:31997695-31997714 Msa1323560:intron 15.0%
!! GTTCTTAAACATAAAATTTA+CGG - chr8_4:31997717-31997736 Msa1323560:intron 15.0%
!! TTCTTAAACATAAAATTTAC+GGG - chr8_4:31997718-31997737 Msa1323560:intron 15.0%
!!! AAATATTTTTTAAACCAGAT+CGG + chr8_4:31998218-31998237 None:intergenic 15.0%
!!! GATAATTGTAGTTGTTTTTA+CGG - chr8_4:31992436-31992455 Msa1323560:three_prime_UTR 20.0%
!!! AGCTTAGTTAGAATTTTTAA+GGG - chr8_4:31993474-31993493 Msa1323560:intron 20.0%
!! TACAAAATTTAATGTGTGAT+AGG - chr8_4:31994313-31994332 Msa1323560:intron 20.0%
!!! AAAAAAAAAACATCTAGAGT+TGG - chr8_4:31994379-31994398 Msa1323560:CDS 20.0%
!! CAAAATAACATACATAAATC+TGG + chr8_4:31994502-31994521 None:intergenic 20.0%
!! TTATTTATAGTACTAAGCTT+AGG - chr8_4:31994604-31994623 Msa1323560:intron 20.0%
!!! ATAATAGAAGTGTATATACA+TGG + chr8_4:31994698-31994717 None:intergenic 20.0%
!!! TTGTATAGTACATTTACTTT+TGG - chr8_4:31995009-31995028 Msa1323560:intron 20.0%
!!! TATATGAATATATAATGGAG+TGG - chr8_4:31995071-31995090 Msa1323560:intron 20.0%
!! AAACTAACAATATTAAAGAC+TGG - chr8_4:31995266-31995285 Msa1323560:intron 20.0%
!!! TTTTACTCACATCAATTTAT+GGG - chr8_4:31995616-31995635 Msa1323560:intron 20.0%
!! AAGGAAACAAAATATAGAAA+AGG + chr8_4:31995700-31995719 None:intergenic 20.0%
!! TGATAATCCAGTAATATTAA+CGG - chr8_4:31995776-31995795 Msa1323560:intron 20.0%
!! TAGCTGATTATATGAATTAA+CGG + chr8_4:31996214-31996233 None:intergenic 20.0%
!!! TTTATTGGTTGAAATTCATA+TGG - chr8_4:31996676-31996695 Msa1323560:intron 20.0%
!!! TTATTGGTTGAAATTCATAT+GGG - chr8_4:31996677-31996696 Msa1323560:intron 20.0%
!! AAAACTGGAAAATGTAAATA+CGG - chr8_4:31996865-31996884 Msa1323560:CDS 20.0%
!! CTTAAAGAGAAAATTAATAC+CGG + chr8_4:31997072-31997091 None:intergenic 20.0%
!!! AATTTTCTCTTTAAGTTCTT+TGG - chr8_4:31997077-31997096 Msa1323560:intron 20.0%
!! ACATTACAATAATCTAAGAA+TGG + chr8_4:31997829-31997848 None:intergenic 20.0%
!! TGAAGTATAATAATATCACT+GGG + chr8_4:31998004-31998023 None:intergenic 20.0%
!! ATGAAGTATAATAATATCAC+TGG + chr8_4:31998005-31998024 None:intergenic 20.0%
!!! TTGCAGTTTTCAAATAATAT+GGG + chr8_4:31998894-31998913 None:intergenic 20.0%
!! ACATGTAATGAAATAAAACA+AGG + chr8_4:31999107-31999126 None:intergenic 20.0%
!!! TTTTTCAGAGAAATGAGAAA+AGG + chr8_4:31992622-31992641 None:intergenic 25.0%
!! GTTTTTGTCTTAGTGATTAA+TGG - chr8_4:31993008-31993027 Msa1323560:intron 25.0%
! ATTAATTATCATGAGTGATG+TGG - chr8_4:31993037-31993056 Msa1323560:intron 25.0%
! ATGAATGATTGATTGATTGT+TGG - chr8_4:31993101-31993120 Msa1323560:intron 25.0%
!! ATAAGCATTCAATAATGGAA+AGG + chr8_4:31993233-31993252 None:intergenic 25.0%
!! AGGGAATTTTTCTATTAAAG+TGG - chr8_4:31993270-31993289 Msa1323560:CDS 25.0%
! AAAATTATTACTGGTGTCTA+AGG + chr8_4:31993362-31993381 None:intergenic 25.0%
!! GAGCTTAGTTAGAATTTTTA+AGG - chr8_4:31993473-31993492 Msa1323560:intron 25.0%
!!! GTGTTATAAGTTTTATTGTG+AGG - chr8_4:31993683-31993702 Msa1323560:intron 25.0%
! TAGCTATTAGTGTATTGTTA+AGG + chr8_4:31993818-31993837 None:intergenic 25.0%
! TAACAATACACTAATAGCTA+TGG - chr8_4:31993818-31993837 Msa1323560:intron 25.0%
! CATACATACATAGAAATCAA+AGG + chr8_4:31995148-31995167 None:intergenic 25.0%
! ATTTAAGCATTTAACTAGCT+TGG - chr8_4:31995362-31995381 Msa1323560:CDS 25.0%
! AGAAACTGAATAATAATGAG+TGG - chr8_4:31995394-31995413 Msa1323560:intron 25.0%
!! TTACCCAAATTTTCTATTCT+TGG - chr8_4:31995585-31995604 Msa1323560:intron 25.0%
! GTTCCAAGAATAGAAAATTT+GGG + chr8_4:31995591-31995610 None:intergenic 25.0%
! TGTTCCAAGAATAGAAAATT+TGG + chr8_4:31995592-31995611 None:intergenic 25.0%
!! GTTTTACTCACATCAATTTA+TGG - chr8_4:31995615-31995634 Msa1323560:intron 25.0%
! CTAGTAAGAGCTTATAATTT+AGG - chr8_4:31995872-31995891 Msa1323560:intron 25.0%
! GCAAGGATATAAAAAGAAAT+TGG + chr8_4:31995924-31995943 None:intergenic 25.0%
! TAAACAGATTTACAAAAGCA+AGG + chr8_4:31995941-31995960 None:intergenic 25.0%
!!! ACTAATGAAGCTGTTTTTTA+TGG - chr8_4:31995962-31995981 Msa1323560:intron 25.0%
! AGCTGATTATATGAATTAAC+GGG + chr8_4:31996213-31996232 None:intergenic 25.0%
!! TAAATATGTTACCTCTGTTT+TGG - chr8_4:31996232-31996251 Msa1323560:intron 25.0%
! AAAACTCAAAAATGCAAGTT+TGG - chr8_4:31996522-31996541 Msa1323560:intron 25.0%
! TATTCATGCAAAAGATAAAG+AGG + chr8_4:31996798-31996817 None:intergenic 25.0%
! AATCATCAGATAATTGAATC+TGG + chr8_4:31996924-31996943 None:intergenic 25.0%
!! TGATTTTCTTTTTCTTGAAG+TGG - chr8_4:31997234-31997253 Msa1323560:intron 25.0%
! CGAATGGTAAAAAAAAAGTA+AGG + chr8_4:31997297-31997316 None:intergenic 25.0%
! ATATAAATCAGTTGCAAGTT+CGG - chr8_4:31997318-31997337 Msa1323560:intron 25.0%
! TTATACTGTACTTAATCTCT+TGG - chr8_4:31997598-31997617 Msa1323560:intron 25.0%
! CCAAAAAAACAATAACTTTG+AGG + chr8_4:31997748-31997767 None:intergenic 25.0%
!!! CCTCAAAGTTATTGTTTTTT+TGG - chr8_4:31997745-31997764 Msa1323560:intron 25.0%
! ATAATATCACTGGGAAAAAA+AGG + chr8_4:31997995-31998014 None:intergenic 25.0%
! AGCAAATAATTATAAGCTTG+CGG + chr8_4:31998274-31998293 None:intergenic 25.0%
! AAATCTGGCATATGTAAATT+TGG - chr8_4:31998382-31998401 Msa1323560:intron 25.0%
! AATCTGGCATATGTAAATTT+GGG - chr8_4:31998383-31998402 Msa1323560:intron 25.0%
! GCTACTAAAAATGGAATTAA+TGG + chr8_4:31998747-31998766 None:intergenic 25.0%
!!! TAAGTTGATGCTACTAAAAA+TGG + chr8_4:31998756-31998775 None:intergenic 25.0%
! GAATCTCTGATAAAAATTTG+AGG + chr8_4:31998784-31998803 None:intergenic 25.0%
!! GTTGCAGTTTTCAAATAATA+TGG + chr8_4:31998895-31998914 None:intergenic 25.0%
AAGAAGATGAATGAGATATG+AGG + chr8_4:31992542-31992561 None:intergenic 30.0%
AAATGAGAAAAGGATGGTAT+TGG + chr8_4:31992612-31992631 None:intergenic 30.0%
!! ATTCGGTTTTCCATTTGTTA+TGG + chr8_4:31992651-31992670 None:intergenic 30.0%
TGATTGATTGATTGTTGGAA+CGG - chr8_4:31993106-31993125 Msa1323560:intron 30.0%
TACGCATAAGCATTCAATAA+TGG + chr8_4:31993238-31993257 None:intergenic 30.0%
AATGCTTATGCGTAAATGAT+TGG - chr8_4:31993244-31993263 Msa1323560:CDS 30.0%
ATGCTTATGCGTAAATGATT+GGG - chr8_4:31993245-31993264 Msa1323560:CDS 30.0%
! TTTTTCTATTAAAGTGGCAC+TGG - chr8_4:31993276-31993295 Msa1323560:CDS 30.0%
! TTTTCTATTAAAGTGGCACT+GGG - chr8_4:31993277-31993296 Msa1323560:CDS 30.0%
!!! AAGTTTTATTGTGAGGTTAG+AGG - chr8_4:31993690-31993709 Msa1323560:intron 30.0%
GTTATATAAATAACACCCAG+AGG + chr8_4:31993741-31993760 None:intergenic 30.0%
TTCTATGATTATGAGTCAAG+TGG - chr8_4:31994060-31994079 Msa1323560:intron 30.0%
CTAACAAGAACCTGTAAATT+TGG - chr8_4:31994879-31994898 Msa1323560:intron 30.0%
TTCACCAGATCTACATAAAA+TGG - chr8_4:31995470-31995489 Msa1323560:intron 30.0%
! ACTACCATTTTATGTAGATC+TGG + chr8_4:31995477-31995496 None:intergenic 30.0%
ACATCAATTTATGGGAAAGT+TGG - chr8_4:31995624-31995643 Msa1323560:intron 30.0%
ATAGAAAAGGAAAGAAGAGA+AGG + chr8_4:31995687-31995706 None:intergenic 30.0%
! TTTCCTTTTTCTGTCACAAA+GGG - chr8_4:31995713-31995732 Msa1323560:intron 30.0%
TTATAATTTAGGAGCTGTGA+TGG - chr8_4:31995883-31995902 Msa1323560:intron 30.0%
ACATATATCAGTCAATGCAA+TGG - chr8_4:31996035-31996054 Msa1323560:intron 30.0%
!! CTGATTTGTTACAATGTATG+TGG - chr8_4:31996315-31996334 Msa1323560:intron 30.0%
GGTTTATTCATAACTGCTTT+AGG - chr8_4:31996336-31996355 Msa1323560:intron 30.0%
GTTTCACTTGGAACAATATT+TGG + chr8_4:31996364-31996383 None:intergenic 30.0%
TAATTGCAAATTCTACTCAC+TGG + chr8_4:31996418-31996437 None:intergenic 30.0%
GGTTGAAATTCAAATCATGT+AGG + chr8_4:31996724-31996743 None:intergenic 30.0%
! ATGTAGTTCTACTTGAAAAC+TGG - chr8_4:31996850-31996869 Msa1323560:CDS 30.0%
AATTGAATCTGGATATCCTT+GGG + chr8_4:31996913-31996932 None:intergenic 30.0%
TAATTGAATCTGGATATCCT+TGG + chr8_4:31996914-31996933 None:intergenic 30.0%
ACAAATTCTTCTGTGTTTGA+TGG - chr8_4:31996970-31996989 Msa1323560:CDS 30.0%
CAAATTCTTCTGTGTTTGAT+GGG - chr8_4:31996971-31996990 Msa1323560:CDS 30.0%
AAATTCTTCTGTGTTTGATG+GGG - chr8_4:31996972-31996991 Msa1323560:CDS 30.0%
GATTTGTATCATGAAAAACC+AGG + chr8_4:31997157-31997176 None:intergenic 30.0%
! GCAACTGATTTATATACGAA+TGG + chr8_4:31997313-31997332 None:intergenic 30.0%
AGTATACATACCATTCATGT+CGG + chr8_4:31997367-31997386 None:intergenic 30.0%
TGAATGGTATGTATACTGTT+TGG - chr8_4:31997370-31997389 Msa1323560:intron 30.0%
AATTCCATATGTTTGTGCTT+TGG - chr8_4:31997426-31997445 Msa1323560:intron 30.0%
AATGTTAAGATTAGCAGTTG+AGG + chr8_4:31997502-31997521 None:intergenic 30.0%
TCAACTGCTAATCTTAACAT+TGG - chr8_4:31997501-31997520 Msa1323560:intron 30.0%
! TGTCAAATCAAATGGTAATG+TGG - chr8_4:31997571-31997590 Msa1323560:intron 30.0%
TAATGTAAACAAACACCTGT+TGG - chr8_4:31997646-31997665 Msa1323560:intron 30.0%
TTGTAATGTATATTCCCAAG+AGG - chr8_4:31997840-31997859 Msa1323560:intron 30.0%
TTAGACTTCCAAGTATATTC+TGG + chr8_4:31997872-31997891 None:intergenic 30.0%
ATTCATCTCATCTGGTTATT+TGG - chr8_4:31997891-31997910 Msa1323560:intron 30.0%
TTCATTGCCCAATATCTATT+AGG - chr8_4:31998020-31998039 Msa1323560:intron 30.0%
TCATTGCCCAATATCTATTA+GGG - chr8_4:31998021-31998040 Msa1323560:intron 30.0%
AGTGATCCCTAATAGATATT+GGG + chr8_4:31998030-31998049 None:intergenic 30.0%
AAGTGATCCCTAATAGATAT+TGG + chr8_4:31998031-31998050 None:intergenic 30.0%
!! TCATTTTTCACAAGCAACAA+AGG + chr8_4:31998055-31998074 None:intergenic 30.0%
! TTGTTGCTTGTGAAAAATGA+TGG - chr8_4:31998055-31998074 Msa1323560:intron 30.0%
! TGTTGCTTGTGAAAAATGAT+GGG - chr8_4:31998056-31998075 Msa1323560:intron 30.0%
TAAACAGATAGATTGTCAAG+CGG + chr8_4:31998099-31998118 None:intergenic 30.0%
TCGGTTCTTGAATAGATAAA+GGG + chr8_4:31998199-31998218 None:intergenic 30.0%
! ATCGGTTCTTGAATAGATAA+AGG + chr8_4:31998200-31998219 None:intergenic 30.0%
GCAAATAATTATAAGCTTGC+GGG + chr8_4:31998273-31998292 None:intergenic 30.0%
AGATTTCATATAGAACTGCA+TGG + chr8_4:31998368-31998387 None:intergenic 30.0%
ATGCAGTTCTATATGAAATC+TGG - chr8_4:31998367-31998386 Msa1323560:intron 30.0%
ATCTGGCATATGTAAATTTG+GGG - chr8_4:31998384-31998403 Msa1323560:intron 30.0%
GCAGTAAGTTTAACATTTGA+TGG + chr8_4:31998463-31998482 None:intergenic 30.0%
! TATGTTTCCAAAAAAGTGCA+TGG - chr8_4:31998586-31998605 Msa1323560:intron 30.0%
! ATCTAACTTTTTGTCGTGAA+GGG - chr8_4:31998856-31998875 Msa1323560:CDS 30.0%
! ACCTGTTTTACTTTCTTTAG+TGG - chr8_4:31999148-31999167 Msa1323560:five_prime_UTR 30.0%
TAGTTGACCTATGAAAGTTA+TGG - chr8_4:31999209-31999228 Msa1323560:five_prime_UTR 30.0%
TAGTTGACCATAACTTTCAT+AGG + chr8_4:31999219-31999238 None:intergenic 30.0%
GTGTCAATCTCATGTTGAAT+TGG + chr8_4:31992587-31992606 None:intergenic 35.0%
TCAGAGAAATGAGAAAAGGA+TGG + chr8_4:31992618-31992637 None:intergenic 35.0%
AAGAGGATGTGTTGTAGATT+CGG + chr8_4:31992668-31992687 None:intergenic 35.0%
TGTATTCGGGTCGTAATATT+GGG + chr8_4:31992733-31992752 None:intergenic 35.0%
TTGTATTCGGGTCGTAATAT+TGG + chr8_4:31992734-31992753 None:intergenic 35.0%
TGCTTATGCGTAAATGATTG+GGG - chr8_4:31993246-31993265 Msa1323560:CDS 35.0%
! AGATTAGTTAAGAACCCACT+TGG - chr8_4:31993538-31993557 Msa1323560:intron 35.0%
! GATTAGTTAAGAACCCACTT+GGG - chr8_4:31993539-31993558 Msa1323560:intron 35.0%
AAGAAGCTAAATTAGAACCG+AGG + chr8_4:31993628-31993647 None:intergenic 35.0%
ATAACGAAAATAGGAGAGAG+TGG - chr8_4:31993756-31993775 Msa1323560:intron 35.0%
AGATCTTCTCTATGACAAGA+GGG + chr8_4:31993924-31993943 None:intergenic 35.0%
TGTTGAGATTTACACCATGT+TGG + chr8_4:31993956-31993975 None:intergenic 35.0%
CTAACCAAACTTCAAACAGA+GGG - chr8_4:31994429-31994448 Msa1323560:intron 35.0%
! CATCCATTTTGAGCACAATT+GGG - chr8_4:31994739-31994758 Msa1323560:CDS 35.0%
! ATAAATAGGCAAAGCACTTC+CGG + chr8_4:31994820-31994839 None:intergenic 35.0%
GGTTCTTGTTAGCATATAGT+GGG + chr8_4:31994871-31994890 None:intergenic 35.0%
AGGTTCTTGTTAGCATATAG+TGG + chr8_4:31994872-31994891 None:intergenic 35.0%
CAAGTTCGATCATCCTATTT+GGG - chr8_4:31994911-31994930 Msa1323560:intron 35.0%
CGATTTATATGCTCCATCTT+GGG + chr8_4:31995321-31995340 None:intergenic 35.0%
ACGATTTATATGCTCCATCT+TGG + chr8_4:31995322-31995341 None:intergenic 35.0%
ATGGTAGTCCACTTAATGTT+TGG - chr8_4:31995489-31995508 Msa1323560:intron 35.0%
TCAACTACGCTTATAATGAG+AGG + chr8_4:31995516-31995535 None:intergenic 35.0%
! GTTTCCTTTTTCTGTCACAA+AGG - chr8_4:31995712-31995731 Msa1323560:intron 35.0%
TTGAGAAACCTGTATCAATC+AGG - chr8_4:31995745-31995764 Msa1323560:intron 35.0%
ACACAATTCCTGATTGATAC+AGG + chr8_4:31995756-31995775 None:intergenic 35.0%
TTCACAGCCGTTAATATTAC+TGG + chr8_4:31995786-31995805 None:intergenic 35.0%
CACACATCCTAAATTTCACT+GGG + chr8_4:31996150-31996169 None:intergenic 35.0%
ACACACATCCTAAATTTCAC+TGG + chr8_4:31996151-31996170 None:intergenic 35.0%
! AAATTTAGGATGTGTGTGAG+AGG - chr8_4:31996154-31996173 Msa1323560:intron 35.0%
! CTAGCAACACACTAGTTTAT+TGG - chr8_4:31996661-31996680 Msa1323560:intron 35.0%
ATTGAATCTGGATATCCTTG+GGG + chr8_4:31996912-31996931 None:intergenic 35.0%
TTTGTGTCTGCTCAACATTA+CGG + chr8_4:31996951-31996970 None:intergenic 35.0%
AAAATTAATACCGGTCTCAC+AGG + chr8_4:31997063-31997082 None:intergenic 35.0%
TATCATGAAAAACCAGGCTT+AGG + chr8_4:31997151-31997170 None:intergenic 35.0%
TGATACAAATCTTTGCTGAC+AGG - chr8_4:31997166-31997185 Msa1323560:intron 35.0%
GATACAAATCTTTGCTGACA+GGG - chr8_4:31997167-31997186 Msa1323560:intron 35.0%
ATACAAATCTTTGCTGACAG+GGG - chr8_4:31997168-31997187 Msa1323560:intron 35.0%
TGTCCATTCTACATGAAAAC+TGG - chr8_4:31997200-31997219 Msa1323560:intron 35.0%
! CTTCCAGTTTTCATGTAGAA+TGG + chr8_4:31997206-31997225 None:intergenic 35.0%
CATTCTACATGAAAACTGGA+AGG - chr8_4:31997204-31997223 Msa1323560:intron 35.0%
GTATACATACCATTCATGTC+GGG + chr8_4:31997366-31997385 None:intergenic 35.0%
!! ACCATTTGATTTGACAGACT+GGG + chr8_4:31997567-31997586 None:intergenic 35.0%
!! TACCATTTGATTTGACAGAC+TGG + chr8_4:31997568-31997587 None:intergenic 35.0%
!! TTGGTGTACTACTTTTGCAA+TGG - chr8_4:31997764-31997783 Msa1323560:intron 35.0%
TATTCTGGATGATACCTCTT+GGG + chr8_4:31997857-31997876 None:intergenic 35.0%
ATATTCTGGATGATACCTCT+TGG + chr8_4:31997858-31997877 None:intergenic 35.0%
GGTATCATCCAGAATATACT+TGG - chr8_4:31997861-31997880 Msa1323560:intron 35.0%
GAAGTCTAATTCATCTCATC+TGG - chr8_4:31997883-31997902 Msa1323560:intron 35.0%
GTTGCTTGTGAAAAATGATG+GGG - chr8_4:31998057-31998076 Msa1323560:intron 35.0%
TTGCTTGTGAAAAATGATGG+GGG - chr8_4:31998058-31998077 Msa1323560:intron 35.0%
! AGATAAAGGGAAGAAGTACA+CGG + chr8_4:31998186-31998205 None:intergenic 35.0%
TATCTATTCAAGAACCGATC+TGG - chr8_4:31998201-31998220 Msa1323560:intron 35.0%
! TAGATGTTTTATGCAGAGAC+TGG + chr8_4:31998314-31998333 None:intergenic 35.0%
AATGTTAAACTTACTGCTGC+AGG - chr8_4:31998466-31998485 Msa1323560:intron 35.0%
ATGTTAAACTTACTGCTGCA+GGG - chr8_4:31998467-31998486 Msa1323560:intron 35.0%
!!! CAAGTAACCATGCACTTTTT+TGG + chr8_4:31998596-31998615 None:intergenic 35.0%
! CAAAAAAGTGCATGGTTACT+TGG - chr8_4:31998594-31998613 Msa1323560:intron 35.0%
! CATCTAACTTTTTGTCGTGA+AGG - chr8_4:31998855-31998874 Msa1323560:CDS 35.0%
GCATGATCTCAATATTGTTC+CGG + chr8_4:31999051-31999070 None:intergenic 35.0%
GCCACTAAAGAAAGTAAAAC+AGG + chr8_4:31999152-31999171 None:intergenic 35.0%
TTTAGTGGCAAATTTCTCTC+TGG - chr8_4:31999163-31999182 Msa1323560:five_prime_UTR 35.0%
GATTGGTATCAGTGCTTATT+TGG - chr8_4:31999185-31999204 Msa1323560:five_prime_UTR 35.0%
! TGAGAAAAGGATGGTATTGG+TGG + chr8_4:31992609-31992628 None:intergenic 40.0%
TGAGCGAGGAACATTGTATT+CGG + chr8_4:31992747-31992766 None:intergenic 40.0%
AATCTCCACCACTAATCCTT+GGG - chr8_4:31992857-31992876 Msa1323560:intron 40.0%
! GCGTTTAAGATCAAGTGAAG+CGG + chr8_4:31992943-31992962 None:intergenic 40.0%
GATCTTAAACGCTCTTCTGA+TGG - chr8_4:31992951-31992970 Msa1323560:intron 40.0%
!!! TGTTGGAACGGTTTTAGAGT+TGG - chr8_4:31993118-31993137 Msa1323560:intron 40.0%
TATGCGTAAATGATTGGGGA+AGG - chr8_4:31993250-31993269 Msa1323560:CDS 40.0%
ATGCGTAAATGATTGGGGAA+GGG - chr8_4:31993251-31993270 Msa1323560:CDS 40.0%
ATAACGCAATCTGGTGTCTA+AGG + chr8_4:31993305-31993324 None:intergenic 40.0%
GGTGGTAAAATAACGCAATC+TGG + chr8_4:31993314-31993333 None:intergenic 40.0%
! GCACCTTCGATTTGAACTAT+CGG - chr8_4:31993435-31993454 Msa1323560:intron 40.0%
TCACCGATAGTTCAAATCGA+AGG + chr8_4:31993441-31993460 None:intergenic 40.0%
GAACTATCGGTGATGAAGAA+TGG - chr8_4:31993448-31993467 Msa1323560:intron 40.0%
! CAAACTCACCTCTTTAGTTC+TGG - chr8_4:31993715-31993734 Msa1323560:intron 40.0%
GAGTCGAATATGAGATACAC+TGG - chr8_4:31993790-31993809 Msa1323560:CDS 40.0%
CAGATCTTCTCTATGACAAG+AGG + chr8_4:31993925-31993944 None:intergenic 40.0%
TCATAGAGAAGATCTGCTAC+TGG - chr8_4:31993929-31993948 Msa1323560:intron 40.0%
GAAATAACCAATGCACGCAT+GGG + chr8_4:31993981-31994000 None:intergenic 40.0%
TGAAATAACCAATGCACGCA+TGG + chr8_4:31993982-31994001 None:intergenic 40.0%
GATTATGAGTCAAGTGGCAT+TGG - chr8_4:31994066-31994085 Msa1323560:intron 40.0%
CTGTCAAATAGAAGCCATAG+CGG + chr8_4:31994283-31994302 None:intergenic 40.0%
GCTAACCAAACTTCAAACAG+AGG - chr8_4:31994428-31994447 Msa1323560:intron 40.0%
TTGTGCTCAAAATGGATGGA+TGG + chr8_4:31994737-31994756 None:intergenic 40.0%
CCAATTGTGCTCAAAATGGA+TGG + chr8_4:31994741-31994760 None:intergenic 40.0%
! CCATCCATTTTGAGCACAAT+TGG - chr8_4:31994738-31994757 Msa1323560:CDS 40.0%
TTGCCCAATTGTGCTCAAAA+TGG + chr8_4:31994745-31994764 None:intergenic 40.0%
CACTTCCGGTTTCATATCTA+GGG + chr8_4:31994806-31994825 None:intergenic 40.0%
CTTTGCCTATTTATCCACAG+AGG - chr8_4:31994826-31994845 Msa1323560:CDS 40.0%
GCAAGTTCGATCATCCTATT+TGG - chr8_4:31994910-31994929 Msa1323560:intron 40.0%
TAGTCACCTCTTTCCAATCT+GGG + chr8_4:31994953-31994972 None:intergenic 40.0%
ATAGTCACCTCTTTCCAATC+TGG + chr8_4:31994954-31994973 None:intergenic 40.0%
! CTCAACATTTTGTCCCAAGA+TGG - chr8_4:31995305-31995324 Msa1323560:intron 40.0%
TGAGAGGACCAAACATTAAG+TGG + chr8_4:31995500-31995519 None:intergenic 40.0%
ATGCAATGTGTAAAGCAGCT+TGG - chr8_4:31995535-31995554 Msa1323560:intron 40.0%
TCACCCTTTGTGACAGAAAA+AGG + chr8_4:31995719-31995738 None:intergenic 40.0%
TACTAGTCACTACAATCGAC+AGG + chr8_4:31995858-31995877 None:intergenic 40.0%
!!! ACCTCTGTTTTGGTTGCAAA+AGG - chr8_4:31996242-31996261 Msa1323560:intron 40.0%
! ACCTTTTGCAACCAAAACAG+AGG + chr8_4:31996246-31996265 None:intergenic 40.0%
! GCATTTTCAGAGGGAACATT+TGG + chr8_4:31996570-31996589 None:intergenic 40.0%
! GAAACATCGGCATTTTCAGA+GGG + chr8_4:31996579-31996598 None:intergenic 40.0%
! AGAAACATCGGCATTTTCAG+AGG + chr8_4:31996580-31996599 None:intergenic 40.0%
TCTGAAAATGCCGATGTTTC+TGG - chr8_4:31996579-31996598 Msa1323560:intron 40.0%
ATCAATATCTAACCGCGCAA+GGG + chr8_4:31996629-31996648 None:intergenic 40.0%
CTCAACAGACACTCTTCTAT+TGG + chr8_4:31996745-31996764 None:intergenic 40.0%
CACTGTCGCATAATAGCAAA+GGG - chr8_4:31997034-31997053 Msa1323560:intron 40.0%
TACAAATCTTTGCTGACAGG+GGG - chr8_4:31997169-31997188 Msa1323560:intron 40.0%
TACAATCATCCCGACATGAA+TGG - chr8_4:31997354-31997373 Msa1323560:intron 40.0%
TGCACCAAAGCACAAACATA+TGG + chr8_4:31997433-31997452 None:intergenic 40.0%
!! TGCAGATACAGGTGGATTAA+TGG + chr8_4:31997457-31997476 None:intergenic 40.0%
TAATCCACCTGTATCTGCAT+TGG - chr8_4:31997458-31997477 Msa1323560:intron 40.0%
AATCCACCTGTATCTGCATT+GGG - chr8_4:31997459-31997478 Msa1323560:intron 40.0%
TTGAGGATGCCAAAACAGAA+GGG + chr8_4:31997485-31997504 None:intergenic 40.0%
GCTTGATAAAAAGATGCAGC+TGG + chr8_4:31997537-31997556 None:intergenic 40.0%
!! CCATTTGATTTGACAGACTG+GGG + chr8_4:31997566-31997585 None:intergenic 40.0%
! GTTATTTGGTTTCCAGTCTC+AGG - chr8_4:31997905-31997924 Msa1323560:intron 40.0%
CATCACATTCAATCTGTCCA+GGG + chr8_4:31997962-31997981 None:intergenic 40.0%
ACATCACATTCAATCTGTCC+AGG + chr8_4:31997963-31997982 None:intergenic 40.0%
!!! TTTTGGGGTAAGACCAGTAA+TGG + chr8_4:31998163-31998182 None:intergenic 40.0%
!! GTTTTGACAGTGATGTTGTG+CGG + chr8_4:31998438-31998457 None:intergenic 40.0%
AGCAAACATACCTCTCTTCT+TGG + chr8_4:31998496-31998515 None:intergenic 40.0%
! TTTTTACGTACTGCGTGTGA+TGG - chr8_4:31998618-31998637 Msa1323560:intron 40.0%
AAAACTGCAACGTGCAAGTT+TGG - chr8_4:31998904-31998923 Msa1323560:CDS 40.0%
TACAACCAATGGAGGAGAAA+CGG - chr8_4:31998996-31999015 Msa1323560:CDS 40.0%
TGGCAAATTTCTCTCTGGAT+TGG - chr8_4:31999168-31999187 Msa1323560:five_prime_UTR 40.0%
TCCTCTTACAACATCCCAAC+CGG - chr8_4:31992681-31992700 Msa1323560:CDS 45.0%
TTCGGGTCGTAATATTGGGT+CGG + chr8_4:31992729-31992748 None:intergenic 45.0%
GAGCGAGGAACATTGTATTC+GGG + chr8_4:31992746-31992765 None:intergenic 45.0%
AGGAGGAGCAATGTCGAAAT+CGG + chr8_4:31992823-31992842 None:intergenic 45.0%
GAATCTCCACCACTAATCCT+TGG - chr8_4:31992856-31992875 Msa1323560:intron 45.0%
!! TTATTTTACCACCGTCCCGA+TGG - chr8_4:31993321-31993340 Msa1323560:CDS 45.0%
! TATTTTACCACCGTCCCGAT+GGG - chr8_4:31993322-31993341 Msa1323560:CDS 45.0%
CTATCGGTGATGAAGAATGG+TGG - chr8_4:31993451-31993470 Msa1323560:intron 45.0%
AGTTAAGAACCCACTTGGGT+TGG - chr8_4:31993543-31993562 Msa1323560:intron 45.0%
TAATCGAACCTGAGACCTTG+AGG + chr8_4:31993604-31993623 None:intergenic 45.0%
GTCTCAGGTTCGATTATCCT+CGG - chr8_4:31993608-31993627 Msa1323560:intron 45.0%
TAGCTATGGCACTTAAGAGC+CGG - chr8_4:31993832-31993851 Msa1323560:intron 45.0%
TCTATGACAAGAGGGAGACA+TGG + chr8_4:31993916-31993935 None:intergenic 45.0%
AGCACTGTAGTCTGTAGTCA+CGG + chr8_4:31994164-31994183 None:intergenic 45.0%
! TGTGCCCTCTGTTTGAAGTT+TGG + chr8_4:31994436-31994455 None:intergenic 45.0%
CAATTGGGCAAAACGAAGCT+TGG - chr8_4:31994754-31994773 Msa1323560:CDS 45.0%
TTGGTATACGTCGAACTCAC+TGG - chr8_4:31994773-31994792 Msa1323560:CDS 45.0%
AAGCGCCCTAGATATGAAAC+CGG - chr8_4:31994798-31994817 Msa1323560:CDS 45.0%
GCACTTCCGGTTTCATATCT+AGG + chr8_4:31994807-31994826 None:intergenic 45.0%
GCAGCTCTCTCCAAATTTAC+AGG + chr8_4:31994892-31994911 None:intergenic 45.0%
! TCATCCTATTTGGGTTCCTG+CGG - chr8_4:31994920-31994939 Msa1323560:intron 45.0%
TGGAATCCCAGATTGGAAAG+AGG - chr8_4:31994944-31994963 Msa1323560:intron 45.0%
TCCAGTGCCCAGTGAAATTT+AGG - chr8_4:31996140-31996159 Msa1323560:intron 45.0%
TCCTAAATTTCACTGGGCAC+TGG + chr8_4:31996144-31996163 None:intergenic 45.0%
CTCAGGTAAGCCAGAAACAT+CGG + chr8_4:31996592-31996611 None:intergenic 45.0%
!! ATGTTTCTGGCTTACCTGAG+AGG - chr8_4:31996592-31996611 Msa1323560:intron 45.0%
TCAATATCTAACCGCGCAAG+GGG + chr8_4:31996628-31996647 None:intergenic 45.0%
GATCAATATCTAACCGCGCA+AGG + chr8_4:31996630-31996649 None:intergenic 45.0%
ATGCAAATTCCATCACCCCA+AGG - chr8_4:31996894-31996913 Msa1323560:CDS 45.0%
TCTGTGTTTGATGGGGCAAT+AGG - chr8_4:31996979-31996998 Msa1323560:CDS 45.0%
TGCGACAGTGGAGATATAAG+AGG + chr8_4:31997024-31997043 None:intergenic 45.0%
!! CCTTTGCTATTATGCGACAG+TGG + chr8_4:31997036-31997055 None:intergenic 45.0%
CCACTGTCGCATAATAGCAA+AGG - chr8_4:31997033-31997052 Msa1323560:intron 45.0%
TCATGTCGGGATGATTGTAG+CGG + chr8_4:31997353-31997372 None:intergenic 45.0%
GTTGAGGATGCCAAAACAGA+AGG + chr8_4:31997486-31997505 None:intergenic 45.0%
CCCCAGTCTGTCAAATCAAA+TGG - chr8_4:31997563-31997582 Msa1323560:intron 45.0%
ACACCTGTTGGTCATTCTTG+TGG - chr8_4:31997658-31997677 Msa1323560:intron 45.0%
CACCTGTTGGTCATTCTTGT+GGG - chr8_4:31997659-31997678 Msa1323560:intron 45.0%
ACCTGTTGGTCATTCTTGTG+GGG - chr8_4:31997660-31997679 Msa1323560:intron 45.0%
TTGGTCATTCTTGTGGGGTA+TGG - chr8_4:31997665-31997684 Msa1323560:intron 45.0%
TGGTCATTCTTGTGGGGTAT+GGG - chr8_4:31997666-31997685 Msa1323560:intron 45.0%
! ATTTGGTTTCCAGTCTCAGG+TGG - chr8_4:31997908-31997927 Msa1323560:intron 45.0%
! TTTGGTTTCCAGTCTCAGGT+GGG - chr8_4:31997909-31997928 Msa1323560:intron 45.0%
! TGTGAAAAATGATGGGGGCT+AGG - chr8_4:31998063-31998082 Msa1323560:intron 45.0%
! GTGAAAAATGATGGGGGCTA+GGG - chr8_4:31998064-31998083 Msa1323560:intron 45.0%
! TGAAAAATGATGGGGGCTAG+GGG - chr8_4:31998065-31998084 Msa1323560:intron 45.0%
GACGACCACTAACATGCTTT+AGG - chr8_4:31998121-31998140 Msa1323560:intron 45.0%
! CCAGTAATGGAATGAGCTAC+TGG + chr8_4:31998150-31998169 None:intergenic 45.0%
CCAGTAGCTCATTCCATTAC+TGG - chr8_4:31998147-31998166 Msa1323560:intron 45.0%
!! GGAAGAAGTACACGGTTTTG+GGG + chr8_4:31998178-31998197 None:intergenic 45.0%
!! GGGAAGAAGTACACGGTTTT+GGG + chr8_4:31998179-31998198 None:intergenic 45.0%
!! AGGGAAGAAGTACACGGTTT+TGG + chr8_4:31998180-31998199 None:intergenic 45.0%
AAATTTGACCATCCACCACC+AGG - chr8_4:31998937-31998956 Msa1323560:CDS 45.0%
ATGGAGATGGCTAAGTCACA+AGG - chr8_4:31998967-31998986 Msa1323560:CDS 45.0%
CAAGGAGCTTCTACAACCAA+TGG - chr8_4:31998985-31999004 Msa1323560:CDS 45.0%
! AGAACCAGGCACATTTTCGT+TGG + chr8_4:31999025-31999044 None:intergenic 45.0%
!!! AATAAAAATATAATTTTCAT+AGG + chr8_4:31994991-31995010 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTACAAA+CGG + chr8_4:31999266-31999285 None:intergenic 5.0%
TCCGGTTGGGATGTTGTAAG+AGG + chr8_4:31992685-31992704 None:intergenic 50.0%
!! TGTAGTTGATGGAGCTGCTC+CGG + chr8_4:31992703-31992722 None:intergenic 50.0%
TCGGGTCGTAATATTGGGTC+GGG + chr8_4:31992728-31992747 None:intergenic 50.0%
TGTCGAAATCGGAGGAGTAG+CGG + chr8_4:31992812-31992831 None:intergenic 50.0%
AGGAGCAATGTCGAAATCGG+AGG + chr8_4:31992820-31992839 None:intergenic 50.0%
GATTTCGACATTGCTCCTCC+TGG - chr8_4:31992822-31992841 Msa1323560:CDS 50.0%
ATTCTAGACGCAACTCCAGG+AGG + chr8_4:31992840-31992859 None:intergenic 50.0%
GAGATTCTAGACGCAACTCC+AGG + chr8_4:31992843-31992862 None:intergenic 50.0%
! ATTCGCCCAAGGATTAGTGG+TGG + chr8_4:31992865-31992884 None:intergenic 50.0%
AGCATTCGCCCAAGGATTAG+TGG + chr8_4:31992868-31992887 None:intergenic 50.0%
! GGCAACATTTGTTGCAGCAG+CGG + chr8_4:31992916-31992935 None:intergenic 50.0%
AAGATCAAGTGAAGCGGCAG+AGG + chr8_4:31992937-31992956 None:intergenic 50.0%
CAGTTCAAATCCCATCGGGA+CGG + chr8_4:31993335-31993354 None:intergenic 50.0%
GTCCCGATGGGATTTGAACT+GGG - chr8_4:31993334-31993353 Msa1323560:CDS 50.0%
TGCCCAGTTCAAATCCCATC+GGG + chr8_4:31993339-31993358 None:intergenic 50.0%
GTGCCCAGTTCAAATCCCAT+CGG + chr8_4:31993340-31993359 None:intergenic 50.0%
!! ACCTCTTTAGTTCTGGCCTC+TGG - chr8_4:31993722-31993741 Msa1323560:intron 50.0%
!! CCTCTTTAGTTCTGGCCTCT+GGG - chr8_4:31993723-31993742 Msa1323560:intron 50.0%
GATCTGCTACTGGACCAACA+TGG - chr8_4:31993939-31993958 Msa1323560:intron 50.0%
CAACATTCCCATGCGTGCAT+TGG - chr8_4:31993971-31993990 Msa1323560:intron 50.0%
!! GAGTCAAGTGGCATTGGCTT+AGG - chr8_4:31994072-31994091 Msa1323560:intron 50.0%
!! TCAAGTGGCATTGGCTTAGG+TGG - chr8_4:31994075-31994094 Msa1323560:intron 50.0%
!! CAAGTGGCATTGGCTTAGGT+GGG - chr8_4:31994076-31994095 Msa1323560:intron 50.0%
!! AAGTGGCATTGGCTTAGGTG+GGG - chr8_4:31994077-31994096 Msa1323560:intron 50.0%
CATAGCGGCGCTACATATAG+TGG + chr8_4:31994268-31994287 None:intergenic 50.0%
CACTATATGTAGCGCCGCTA+TGG - chr8_4:31994266-31994285 Msa1323560:CDS 50.0%
! GGTTTCATATCTAGGGCGCT+TGG + chr8_4:31994799-31994818 None:intergenic 50.0%
CCTGGCCTCTGTGGATAAAT+AGG + chr8_4:31994834-31994853 None:intergenic 50.0%
CCTATTTATCCACAGAGGCC+AGG - chr8_4:31994831-31994850 Msa1323560:CDS 50.0%
! CATCCTATTTGGGTTCCTGC+GGG - chr8_4:31994921-31994940 Msa1323560:intron 50.0%
CTCTCGGGAAGAGTTTCACT+TGG + chr8_4:31996376-31996395 None:intergenic 50.0%
!! ATCTGGTTCTCCAGGTCTCT+CGG + chr8_4:31996392-31996411 None:intergenic 50.0%
CAATATCTAACCGCGCAAGG+GGG + chr8_4:31996627-31996646 None:intergenic 50.0%
TGGGCTCCACTGAGTTTATG+TGG - chr8_4:31996696-31996715 Msa1323560:intron 50.0%
TAGGCGCCACATAAACTCAG+TGG + chr8_4:31996705-31996724 None:intergenic 50.0%
TCTGGATATCCTTGGGGTGA+TGG + chr8_4:31996906-31996925 None:intergenic 50.0%
ACCTAAACATCGCCTAAGCC+TGG - chr8_4:31997136-31997155 Msa1323560:intron 50.0%
ACCAGGCTTAGGCGATGTTT+AGG + chr8_4:31997140-31997159 None:intergenic 50.0%
! TGCATTGGGCCCTTCTGTTT+TGG - chr8_4:31997473-31997492 Msa1323560:intron 50.0%
ACCCCACAAGAATGACCAAC+AGG + chr8_4:31997664-31997683 None:intergenic 50.0%
AGTCTCAGGTGGGAGTAACA+GGG - chr8_4:31997919-31997938 Msa1323560:intron 50.0%
GGCAGCCTAAAGCATGTTAG+TGG + chr8_4:31998129-31998148 None:intergenic 50.0%
GTGATGTTGTGCGGTCGATT+GGG + chr8_4:31998429-31998448 None:intergenic 50.0%
AGTGATGTTGTGCGGTCGAT+TGG + chr8_4:31998430-31998449 None:intergenic 50.0%
TGCAGGGTTACCAAGAAGAG+AGG - chr8_4:31998483-31998502 Msa1323560:intron 50.0%
ATCTCCATCACTTCTCCTGG+TGG + chr8_4:31998955-31998974 None:intergenic 50.0%
! ACCAGGAGAAGTGATGGAGA+TGG - chr8_4:31998954-31998973 Msa1323560:CDS 50.0%
GGAGCTTCTACAACCAATGG+AGG - chr8_4:31998988-31999007 Msa1323560:CDS 50.0%
GAGACCAACGAAAATGTGCC+TGG - chr8_4:31999018-31999037 Msa1323560:CDS 50.0%
!! AAATGTGCCTGGTTCTGCTC+CGG - chr8_4:31999029-31999048 Msa1323560:CDS 50.0%
TATTGTTCCGGAGCAGAACC+AGG + chr8_4:31999039-31999058 None:intergenic 50.0%
TTGATGGAGCTGCTCCGGTT+GGG + chr8_4:31992698-31992717 None:intergenic 55.0%
TGGGTCGGGGATGTAGTTGA+TGG + chr8_4:31992714-31992733 None:intergenic 55.0%
CGGGTCGTAATATTGGGTCG+GGG + chr8_4:31992727-31992746 None:intergenic 55.0%
! GAAATCGGAGGAGTAGCGGA+TGG + chr8_4:31992808-31992827 None:intergenic 55.0%
! ATTTGTTGCAGCAGCGGCGA+CGG + chr8_4:31992910-31992929 None:intergenic 55.0%
TTCAAATCCCATCGGGACGG+TGG + chr8_4:31993332-31993351 None:intergenic 55.0%
CGTCCCGATGGGATTTGAAC+TGG - chr8_4:31993333-31993352 Msa1323560:CDS 55.0%
!! TTGGGTTGGCCTGGTGGTAT+TGG - chr8_4:31993557-31993576 Msa1323560:intron 55.0%
!! TTGGCCTGGTGGTATTGGCT+TGG - chr8_4:31993562-31993581 Msa1323560:intron 55.0%
!! TGGCCTGGTGGTATTGGCTT+GGG - chr8_4:31993563-31993582 Msa1323560:intron 55.0%
! ACCTGAGAGTGTGCTCCTCA+AGG - chr8_4:31993586-31993605 Msa1323560:intron 55.0%
! ACCTTGAGGAGCACACTCTC+AGG + chr8_4:31993590-31993609 None:intergenic 55.0%
AGTGTGCTCCTCAAGGTCTC+AGG - chr8_4:31993593-31993612 Msa1323560:intron 55.0%
CCCAGAGGCCAGAACTAAAG+AGG + chr8_4:31993726-31993745 None:intergenic 55.0%
TGGGCACAATCCTTCTCTCC+TGG + chr8_4:31994852-31994871 None:intergenic 55.0%
GAAACTCTTCCCGAGAGACC+TGG - chr8_4:31996379-31996398 Msa1323560:intron 55.0%
!! TCTGGTTCTCCAGGTCTCTC+GGG + chr8_4:31996391-31996410 None:intergenic 55.0%
CAAAGGGCTTCCTGTGAGAC+CGG - chr8_4:31997050-31997069 Msa1323560:intron 55.0%
TCTTTGCTGACAGGGGGAAG+TGG - chr8_4:31997175-31997194 Msa1323560:intron 55.0%
GGGATGATTGTAGCGGCAAC+TGG + chr8_4:31997346-31997365 None:intergenic 55.0%
GAAGGGCCCAATGCAGATAC+AGG + chr8_4:31997468-31997487 None:intergenic 55.0%
CTGTTACTCCCACCTGAGAC+TGG + chr8_4:31997920-31997939 None:intergenic 55.0%
CAGTCTCAGGTGGGAGTAAC+AGG - chr8_4:31997918-31997937 Msa1323560:intron 55.0%
ACTATCTATCCTCAGCGCCC+TGG - chr8_4:31997942-31997961 Msa1323560:intron 55.0%
TTGTGCGGTCGATTGGGTGA+TGG + chr8_4:31998423-31998442 None:intergenic 55.0%
!! TCACTTCTCCTGGTGGTGGA+TGG + chr8_4:31998948-31998967 None:intergenic 55.0%
TCCACCACCAGGAGAAGTGA+TGG - chr8_4:31998948-31998967 Msa1323560:CDS 55.0%
TCCATCACTTCTCCTGGTGG+TGG + chr8_4:31998952-31998971 None:intergenic 55.0%
GCCATCTCCATCACTTCTCC+TGG + chr8_4:31998958-31998977 None:intergenic 55.0%
GGTCTCCGTTTCTCCTCCAT+TGG + chr8_4:31999004-31999023 None:intergenic 55.0%
! GTTGATGGAGCTGCTCCGGT+TGG + chr8_4:31992699-31992718 None:intergenic 60.0%
!! GTAGCGGATGGAGGAAGCAG+CGG + chr8_4:31992796-31992815 None:intergenic 60.0%
!! ATCGGAGGAGTAGCGGATGG+AGG + chr8_4:31992805-31992824 None:intergenic 60.0%
!! GAGGGGAAAGCATTCGCCCA+AGG + chr8_4:31992876-31992895 None:intergenic 60.0%
!! AGAACCCACTTGGGTTGGCC+TGG - chr8_4:31993548-31993567 Msa1323560:intron 60.0%
ACCACCAGGCCAACCCAAGT+GGG + chr8_4:31993555-31993574 None:intergenic 60.0%
TACCACCAGGCCAACCCAAG+TGG + chr8_4:31993556-31993575 None:intergenic 60.0%
GGTCCCAAGCCAATACCACC+AGG + chr8_4:31993569-31993588 None:intergenic 60.0%
TCCACAGAGGCCAGGAGAGA+AGG - chr8_4:31994839-31994858 Msa1323560:CDS 60.0%
TCCTTCTCTCCTGGCCTCTG+TGG + chr8_4:31994843-31994862 None:intergenic 60.0%
CCACCCGCAGGAACCCAAAT+AGG + chr8_4:31994927-31994946 None:intergenic 60.0%
! CCTATTTGGGTTCCTGCGGG+TGG - chr8_4:31994924-31994943 Msa1323560:intron 60.0%
! CAATCTGGGATTCCACCCGC+AGG + chr8_4:31994939-31994958 None:intergenic 60.0%
CTGCGGGTGGAATCCCAGAT+TGG - chr8_4:31994937-31994956 Msa1323560:intron 60.0%
TGGCTTACCTGAGAGGCCAC+AGG - chr8_4:31996599-31996618 Msa1323560:intron 60.0%
GGGCCCAATGCAGATACAGG+TGG + chr8_4:31997465-31997484 None:intergenic 60.0%
!! TCAATCTGTCCAGGGCGCTG+AGG + chr8_4:31997954-31997973 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTGG+TGG - chr8_4:31993551-31993570 Msa1323560:intron 65.0%
CGGTGCGGCGATAGTGAGCG+AGG + chr8_4:31992761-31992780 None:intergenic 70.0%
GATGGAGGAAGCAGCGGCGG+CGG + chr8_4:31992790-31992809 None:intergenic 70.0%
GCGGATGGAGGAAGCAGCGG+CGG + chr8_4:31992793-31992812 None:intergenic 70.0%
TGTTGCAGCAGCGGCGACGG+CGG + chr8_4:31992907-31992926 None:intergenic 70.0%
GGAAGCAGCGGCGGCGGCTT+CGG + chr8_4:31992784-31992803 None:intergenic 75.0%
GGGGGCTCCTGTGGCCTCTC+AGG + chr8_4:31996609-31996628 None:intergenic 75.0%
GCCACAGGAGCCCCCTTGCG+CGG - chr8_4:31996614-31996633 Msa1323560:intron 75.0%
ACCGCGCAAGGGGGCTCCTG+TGG + chr8_4:31996618-31996637 None:intergenic 75.0%
! AGCAGCGGCGGCGGCTTCGG+CGG + chr8_4:31992781-31992800 None:intergenic 80.0%
! AGCAGCGGCGACGGCGGCAG+CGG + chr8_4:31992901-31992920 None:intergenic 80.0%
! CGGCGGCGGCTTCGGCGGTG+CGG + chr8_4:31992776-31992795 None:intergenic 85.0%
! CGACGGCGGCAGCGGCGGAG+GGG + chr8_4:31992893-31992912 None:intergenic 85.0%
! GCGACGGCGGCAGCGGCGGA+GGG + chr8_4:31992894-31992913 None:intergenic 85.0%
! AGCGGCGACGGCGGCAGCGG+CGG + chr8_4:31992898-31992917 None:intergenic 85.0%
! GGCGACGGCGGCAGCGGCGG+AGG + chr8_4:31992895-31992914 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 31992414 31999328 31992414 ID=Msa1323560;Name=Msa1323560
chr8_4 mRNA 31992414 31999328 31992414 ID=Msa1323560-mRNA-1;Parent=Msa1323560;Name=Msa1323560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=243|1|1|1|1|1|11|266|515
chr8_4 exon 31992414 31992865 31992414 ID=Msa1323560-mRNA-1:exon:10431;Parent=Msa1323560-mRNA-1
chr8_4 exon 31993238 31993369 31993238 ID=Msa1323560-mRNA-1:exon:10430;Parent=Msa1323560-mRNA-1
chr8_4 exon 31993762 31993821 31993762 ID=Msa1323560-mRNA-1:exon:10429;Parent=Msa1323560-mRNA-1
chr8_4 exon 31994158 31994288 31994158 ID=Msa1323560-mRNA-1:exon:10428;Parent=Msa1323560-mRNA-1
chr8_4 exon 31994367 31994413 31994367 ID=Msa1323560-mRNA-1:exon:10427;Parent=Msa1323560-mRNA-1
chr8_4 exon 31994517 31994554 31994517 ID=Msa1323560-mRNA-1:exon:10426;Parent=Msa1323560-mRNA-1
chr8_4 exon 31994671 31994886 31994671 ID=Msa1323560-mRNA-1:exon:10425;Parent=Msa1323560-mRNA-1
chr8_4 exon 31995107 31995229 31995107 ID=Msa1323560-mRNA-1:exon:10424;Parent=Msa1323560-mRNA-1
chr8_4 exon 31995325 31995384 31995325 ID=Msa1323560-mRNA-1:exon:10423;Parent=Msa1323560-mRNA-1
chr8_4 exon 31996777 31997015 31996777 ID=Msa1323560-mRNA-1:exon:10422;Parent=Msa1323560-mRNA-1
chr8_4 exon 31998770 31999328 31998770 ID=Msa1323560-mRNA-1:exon:10421;Parent=Msa1323560-mRNA-1
chr8_4 five_prime_UTR 31999086 31999328 31999086 ID=Msa1323560-mRNA-1:five_prime_utr;Parent=Msa1323560-mRNA-1
chr8_4 CDS 31998770 31999085 31998770 ID=Msa1323560-mRNA-1:cds;Parent=Msa1323560-mRNA-1
chr8_4 CDS 31996777 31997015 31996777 ID=Msa1323560-mRNA-1:cds;Parent=Msa1323560-mRNA-1
chr8_4 CDS 31995325 31995384 31995325 ID=Msa1323560-mRNA-1:cds;Parent=Msa1323560-mRNA-1
chr8_4 CDS 31995107 31995229 31995107 ID=Msa1323560-mRNA-1:cds;Parent=Msa1323560-mRNA-1
chr8_4 CDS 31994671 31994886 31994671 ID=Msa1323560-mRNA-1:cds;Parent=Msa1323560-mRNA-1
chr8_4 CDS 31994517 31994554 31994517 ID=Msa1323560-mRNA-1:cds;Parent=Msa1323560-mRNA-1
chr8_4 CDS 31994367 31994413 31994367 ID=Msa1323560-mRNA-1:cds;Parent=Msa1323560-mRNA-1
chr8_4 CDS 31994158 31994288 31994158 ID=Msa1323560-mRNA-1:cds;Parent=Msa1323560-mRNA-1
chr8_4 CDS 31993762 31993821 31993762 ID=Msa1323560-mRNA-1:cds;Parent=Msa1323560-mRNA-1
chr8_4 CDS 31993238 31993369 31993238 ID=Msa1323560-mRNA-1:cds;Parent=Msa1323560-mRNA-1
chr8_4 CDS 31992680 31992865 31992680 ID=Msa1323560-mRNA-1:cds;Parent=Msa1323560-mRNA-1
chr8_4 three_prime_UTR 31992414 31992679 31992414 ID=Msa1323560-mRNA-1:three_prime_utr;Parent=Msa1323560-mRNA-1
Gene Sequence

>Msa1323560

ATGGAAAACCGAATCTACAACACATCCTCTTACAACATCCCAACCGGAGCAGCTCCATCAACTACATCCCCGACCCAATATTACGACCCGAATACAATGTTCCTCGCTCACTATCGCCGCACCGCCGAAGCCGCCGCCGCTGCTTCCTCCATCCGCTACTCCTCCGATTTCGACATTGCTCCTCCTGGAGTTGCGTCTAGAATCTCCACCACTAATCCTTGGGCGAATGCTTTCCCCTCCGCCGCTGCCGCCGTCGCCGCTGCTGCAACAAATGTTGCCTCTGCCGCTTCACTTGATCTTAAACGCTCTTCTGATGCGCTCTACCATCCATCCATTTTGAGCACAATTGGGCAAAACGAAGCTTGGTATACGTCGAACTCACTGGCCAAGCGCCCTAGATATGAAACCGGAAGTGCTTTGCCTATTTATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTAACAAGAACCTGTAAATTTGGAGAGAGCTGCAAGTTCGATCATCCTATTTGGGTTCCTGCGGGTGGAATCCCAGATTGGAAAGAGGTTCCAAATATTGTTCCAAGTGAAACTCTTCCCGAGAGACCTGGAGAACCAGATTGTCCATTCTTTCTGAAAACTCAAAAATGCAAGTTTGGTACAAAGTGCAAATTTAATCATCCAAATGTTCCCTCTGAAAATGCCGATGTTTCTGGCTTACCTGAGAGGCCACAGGAGCCCCCTTGCGCGTTCTACTTGAAAACTGGAAAATGTAAATACGGTGCTGCATGCAAATTCCATCACCCCAAGGATATCCAGATTCAATTATCTGATGATTTGAGCCGTAATGTTGAGCAGACACAAACAAATTCTTCTGTGTTTGATGGGGCAATAGGAGATACACAGTCAACTATGCCTCTTATATCTCCACTGTCGCATAATAGCAAAGGGCTTCCTGTGAGACCGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGAAGTTGCAAGTTCGGTGCCAGTTGCCGCTACAATCATCCCGACATGAATGCCATTAATCCACCTGTATCTGCATTGGGCCCTTCTGTTTTGGCATCCTCAACTGCTAATCTTAACATTGGAGCTATTAATCCAGCTGCATCTTTTTATCAAGCTTTTGACCCCAGTCTGTCAAATCAAATGTCTCAGGTGGGAGTAACAGGGACTATCTATCCTCAGCGCCCTGGACAGATTGAATGTGATTTCTATATGAAATCTGGCATATGTAAATTTGGGGAAAGATGCAAGTACCATCACCCAATCGACCGCACAACATCACTGTCAAAACTGCCATCAAATGTTAAACTTACTGCTGCAGGGTTACCAAGAAGAGAGGGTGTTGAGATATGCCCATATTATTTGAAAACTGCAACGTGCAAGTTTGGTGCAACATGCAAATTTGACCATCCACCACCAGGAGAAGTGATGGAGATGGCTAAGTCACAAGGAGCTTCTACAACCAATGGAGGAGAAACGGAGACCAACGAAAATGTGCCTGGTTCTGCTCCGGAACAATATTGA
Protein sequence

>Msa1323560

MENRIYNTSSYNIPTGAAPSTTSPTQYYDPNTMFLAHYRRTAEAAAAASSIRYSSDFDIAPPGVASRISTTNPWANAFPSAAAAVAAAATNVASAASLDLKRSSDALYHPSILSTIGQNEAWYTSNSLAKRPRYETGSALPIYPQRPGEKDCAHYMLTRTCKFGESCKFDHPIWVPAGGIPDWKEVPNIVPSETLPERPGEPDCPFFLKTQKCKFGTKCKFNHPNVPSENADVSGLPERPQEPPCAFYLKTGKCKYGAACKFHHPKDIQIQLSDDLSRNVEQTQTNSSVFDGAIGDTQSTMPLISPLSHNSKGLPVRPGEVDCPFYMKTGSCKFGASCRYNHPDMNAINPPVSALGPSVLASSTANLNIGAINPAASFYQAFDPSLSNQMSQVGVTGTIYPQRPGQIECDFYMKSGICKFGERCKYHHPIDRTTSLSKLPSNVKLTAAGLPRREGVEICPYYLKTATCKFGATCKFDHPPPGEVMEMAKSQGASTTNGGETETNENVPGSAPEQY*