AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1284340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1284340 MtrunA17_Chr8g0356241 96.712 517 10 3 1 515 1 512 0.0 1024
Msa1284340 MtrunA17_Chr5g0438891 34.091 352 136 11 182 479 26 335 1.91e-54 188
Msa1284340 MtrunA17_Chr5g0438891 42.169 83 40 2 144 226 263 337 8.28e-11 63.9
Msa1284340 MtrunA17_Chr3g0116431 31.920 401 166 14 170 499 138 502 5.49e-48 173
Msa1284340 MtrunA17_Chr7g0249221 32.234 394 188 14 116 479 6 350 6.33e-48 171
Msa1284340 MtrunA17_Chr7g0249221 33.163 196 86 3 290 485 3 153 5.54e-27 113
Msa1284340 MtrunA17_Chr7g0249221 49.367 79 35 2 195 268 275 353 6.40e-18 85.9
Msa1284340 MtrunA17_Chr7g0249221 42.000 100 47 4 142 238 274 365 1.74e-13 72.4
Msa1284340 MtrunA17_Chr4g0058011 33.041 342 133 12 195 479 231 533 6.46e-46 169
Msa1284340 MtrunA17_Chr4g0058011 35.088 171 68 4 314 484 231 358 6.15e-25 108
Msa1284340 MtrunA17_Chr4g0058011 36.170 141 72 3 143 274 231 362 1.09e-21 98.6
Msa1284340 MtrunA17_Chr4g0058011 48.780 82 37 1 190 266 453 534 1.99e-18 88.6
Msa1284340 MtrunA17_Chr1g0195891 31.045 335 194 9 136 458 39 348 1.23e-41 152
Msa1284340 MtrunA17_Chr1g0195891 34.731 167 64 3 315 481 47 168 7.62e-23 99.8
Msa1284340 MtrunA17_Chr1g0195891 45.000 80 39 1 400 479 46 120 4.99e-15 76.6
Msa1284340 MtrunA17_Chr2g0286151 35.802 162 68 3 193 349 42 172 1.32e-28 118
Msa1284340 MtrunA17_Chr2g0286151 39.535 172 59 5 315 485 45 172 2.91e-27 114
Msa1284340 MtrunA17_Chr2g0286151 39.568 139 66 4 143 272 44 173 1.80e-25 109
Msa1284340 MtrunA17_Chr2g0286151 42.500 80 42 1 400 479 44 119 8.51e-19 89.4
Msa1284340 MtrunA17_Chr4g0066941 37.821 156 61 4 193 344 41 164 1.14e-26 113
Msa1284340 MtrunA17_Chr4g0066941 37.853 177 63 5 315 490 44 174 2.24e-25 109
Msa1284340 MtrunA17_Chr4g0066941 39.259 135 70 3 143 272 43 170 4.28e-25 108
Msa1284340 MtrunA17_Chr4g0066941 49.367 79 34 1 401 479 333 405 4.46e-18 87.0
Msa1284340 MtrunA17_Chr4g0066941 41.250 80 42 1 400 479 43 117 6.13e-17 83.6
Msa1284340 MtrunA17_Chr4g0066941 46.053 76 38 1 193 265 330 405 2.16e-15 79.0
Msa1284340 MtrunA17_Chr4g0066941 42.683 82 39 3 144 225 333 406 2.34e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1284340 AT3G12680.1 52.242 513 195 13 15 502 37 524 7.84e-176 505
Msa1284340 AT3G12680.1 30.208 192 92 3 315 506 172 321 4.24e-20 94.0
Msa1284340 AT5G16540.3 36.306 314 136 7 194 479 17 294 4.82e-61 204
Msa1284340 AT5G16540.3 33.436 326 131 8 143 430 18 295 4.09e-44 159
Msa1284340 AT5G16540.3 30.890 191 87 4 315 505 19 164 3.38e-25 107
Msa1284340 AT5G16540.3 44.828 87 42 2 393 479 12 92 3.80e-17 83.6
Msa1284340 AT5G16540.3 44.706 85 37 2 142 224 218 294 2.50e-14 74.7
Msa1284340 AT5G16540.1 36.306 314 136 7 194 479 38 315 5.63e-61 205
Msa1284340 AT5G16540.1 33.436 326 131 8 143 430 39 316 4.85e-44 160
Msa1284340 AT5G16540.1 30.890 191 87 4 315 505 40 185 3.24e-25 107
Msa1284340 AT5G16540.1 44.828 87 42 2 393 479 33 113 3.44e-17 84.0
Msa1284340 AT5G16540.1 44.706 85 37 2 142 224 239 315 2.69e-14 75.1
Msa1284340 AT2G47850.1 33.705 359 131 9 192 479 39 361 3.52e-57 197
Msa1284340 AT2G47850.1 29.268 369 132 9 143 430 42 362 8.23e-41 153
Msa1284340 AT2G47850.1 38.636 176 61 3 307 481 35 164 4.03e-29 120
Msa1284340 AT2G47850.1 44.330 97 49 2 383 479 25 116 3.56e-20 93.6
Msa1284340 AT2G47850.1 41.509 106 47 4 143 243 286 381 1.15e-13 73.6
Msa1284340 AT2G47850.3 33.705 359 131 9 192 479 39 361 3.52e-57 197
Msa1284340 AT2G47850.3 29.268 369 132 9 143 430 42 362 8.23e-41 153
Msa1284340 AT2G47850.3 38.636 176 61 3 307 481 35 164 4.03e-29 120
Msa1284340 AT2G47850.3 44.330 97 49 2 383 479 25 116 3.56e-20 93.6
Msa1284340 AT2G47850.3 41.509 106 47 4 143 243 286 381 1.15e-13 73.6
Msa1284340 AT5G16540.2 35.032 314 133 8 194 479 38 308 1.20e-55 191
Msa1284340 AT5G16540.2 32.209 326 128 8 143 430 39 309 5.05e-40 149
Msa1284340 AT5G16540.2 32.402 179 76 4 315 493 40 173 2.62e-25 107
Msa1284340 AT5G16540.2 44.828 87 42 2 393 479 33 113 3.12e-17 84.0
Msa1284340 AT3G02830.2 34.078 358 134 11 188 479 5 326 1.34e-55 191
Msa1284340 AT3G02830.2 32.821 195 86 3 301 495 4 153 4.03e-28 115
Msa1284340 AT3G02830.2 30.925 346 155 13 143 456 62 355 1.54e-27 114
Msa1284340 AT3G02830.2 41.667 132 54 5 190 298 245 376 3.74e-19 89.7
Msa1284340 AT3G02830.2 44.706 85 37 2 142 224 250 326 3.91e-14 74.7
Msa1284340 AT3G02830.1 34.078 358 134 11 188 479 25 346 2.02e-55 191
Msa1284340 AT3G02830.1 38.182 165 77 5 111 266 10 158 1.49e-28 117
Msa1284340 AT3G02830.1 32.500 200 90 3 296 495 19 173 2.48e-28 117
Msa1284340 AT3G02830.1 30.925 346 155 13 143 456 82 375 1.81e-27 114
Msa1284340 AT3G02830.1 41.667 132 54 5 190 298 265 396 4.25e-19 89.7
Msa1284340 AT3G02830.1 44.706 85 37 2 142 224 270 346 3.56e-14 74.7
Msa1284340 AT5G16540.4 35.069 288 123 7 194 453 17 268 7.43e-50 172
Msa1284340 AT5G16540.4 35.458 251 116 6 143 355 18 260 2.92e-37 139
Msa1284340 AT5G16540.4 30.890 191 87 4 315 505 19 164 1.67e-25 106
Msa1284340 AT5G16540.4 44.828 87 42 2 393 479 12 92 2.46e-17 82.8
Msa1284340 AT2G47850.2 34.603 315 161 9 192 479 39 335 3.59e-47 170
Msa1284340 AT2G47850.2 44.330 97 49 2 383 479 25 116 2.23e-20 94.4
Msa1284340 AT2G47850.2 51.220 82 35 2 189 265 254 335 2.50e-18 87.8
Msa1284340 AT2G47850.2 41.509 106 47 4 143 243 260 355 8.38e-14 73.9
Msa1284340 AT3G48440.1 33.237 346 188 10 142 478 106 417 6.18e-46 167
Msa1284340 AT3G48440.1 37.126 167 63 3 315 481 108 232 1.66e-26 112
Msa1284340 AT3G06410.1 31.921 354 197 12 143 478 51 378 2.30e-45 166
Msa1284340 AT3G06410.1 36.646 161 67 3 193 348 49 179 1.01e-30 125
Msa1284340 AT3G06410.1 36.310 168 63 5 315 481 52 176 1.14e-23 104
Msa1284340 AT3G06410.1 41.250 80 43 1 400 479 51 126 7.87e-18 86.7
Msa1284340 AT3G06410.1 30.000 170 84 6 59 223 239 378 2.25e-12 69.7
Msa1284340 AT5G18550.3 32.133 361 182 16 143 478 16 338 1.15e-44 163
Msa1284340 AT5G18550.3 28.152 341 166 9 193 499 14 309 1.06e-36 141
Msa1284340 AT5G18550.1 32.133 361 182 16 143 478 48 370 2.09e-44 163
Msa1284340 AT5G18550.1 28.152 341 166 9 193 499 46 341 1.19e-36 141
Msa1284340 AT5G18550.4 32.133 361 182 16 143 478 48 370 2.19e-44 163
Msa1284340 AT5G18550.4 28.152 341 166 9 193 499 46 341 1.24e-36 141
Msa1284340 AT2G32930.3 32.647 340 181 8 143 478 14 309 2.64e-42 156
Msa1284340 AT2G32930.3 37.126 167 58 4 315 481 15 134 3.73e-28 117
Msa1284340 AT2G32930.3 42.500 80 40 1 400 479 14 87 4.11e-16 80.9
Msa1284340 AT2G32930.2 32.647 340 181 8 143 478 41 336 3.25e-42 157
Msa1284340 AT2G32930.2 34.615 208 87 5 276 481 1 161 7.58e-29 119
Msa1284340 AT1G04990.1 32.012 328 140 10 196 479 45 333 6.42e-42 155
Msa1284340 AT1G04990.1 46.043 139 57 5 135 266 35 162 4.44e-31 125
Msa1284340 AT1G04990.1 37.725 167 56 3 315 481 45 163 5.36e-28 116
Msa1284340 AT1G04990.1 39.241 79 42 1 149 227 264 336 3.77e-11 65.5
Msa1284340 AT1G04990.6 32.012 328 140 10 196 479 45 333 6.42e-42 155
Msa1284340 AT1G04990.6 46.043 139 57 5 135 266 35 162 4.44e-31 125
Msa1284340 AT1G04990.6 37.725 167 56 3 315 481 45 163 5.36e-28 116
Msa1284340 AT1G04990.6 39.241 79 42 1 149 227 264 336 3.77e-11 65.5
Msa1284340 AT1G04990.2 32.012 328 140 10 196 479 45 333 6.42e-42 155
Msa1284340 AT1G04990.2 46.043 139 57 5 135 266 35 162 4.44e-31 125
Msa1284340 AT1G04990.2 37.725 167 56 3 315 481 45 163 5.36e-28 116
Msa1284340 AT1G04990.2 39.241 79 42 1 149 227 264 336 3.77e-11 65.5
Msa1284340 AT5G63260.1 29.252 441 242 14 62 481 17 408 6.76e-41 153
Msa1284340 AT5G63260.1 40.594 101 53 3 193 288 329 427 3.92e-14 75.1
Msa1284340 AT5G63260.2 28.603 451 248 14 62 481 17 424 2.83e-40 151
Msa1284340 AT5G63260.2 34.118 170 85 6 315 484 99 241 3.52e-24 105
Msa1284340 AT5G63260.2 40.594 101 53 3 193 288 345 443 4.18e-14 75.1
Msa1284340 AT5G18550.2 30.748 361 174 16 143 478 48 357 9.75e-40 150
Msa1284340 AT5G18550.2 28.955 335 159 9 193 493 46 335 1.37e-37 144
Msa1284340 AT1G04990.5 30.488 328 125 9 196 479 45 313 5.65e-38 144
Msa1284340 AT1G04990.5 46.043 139 57 5 135 266 35 162 2.79e-31 125
Msa1284340 AT1G04990.5 37.725 167 56 3 315 481 45 163 3.95e-28 116
Msa1284340 AT2G32930.1 31.765 340 180 9 143 478 41 332 6.59e-38 145
Msa1284340 AT2G32930.1 34.500 200 80 5 282 481 9 157 4.08e-25 108
Msa1284340 AT1G04990.3 29.455 275 113 8 247 479 17 252 2.36e-26 109
Msa1284340 AT1G04990.3 47.368 76 35 1 406 481 12 82 2.55e-17 83.6
Msa1284340 AT1G04990.3 49.254 67 26 2 206 266 17 81 1.66e-13 72.0
Msa1284340 AT1G04990.3 39.241 79 42 1 149 227 183 255 1.52e-11 66.2
Msa1284340 AT1G04990.4 27.636 275 98 7 247 479 17 232 2.31e-22 97.8
Msa1284340 AT1G04990.4 47.368 76 35 1 406 481 12 82 2.45e-17 83.2
Msa1284340 AT1G04990.4 49.254 67 26 2 206 266 17 81 1.59e-13 72.0
Msa1284340 AT2G47850.4 52.564 78 32 2 193 265 162 239 1.06e-18 87.8
Msa1284340 AT2G47850.4 24.818 274 91 7 232 430 7 240 4.54e-16 80.1
Msa1284340 AT2G47850.4 41.509 106 47 4 143 243 164 259 3.41e-14 74.3
Msa1284340 AT1G48195.1 45.570 79 39 1 400 478 6 80 1.14e-16 75.5
Msa1284340 AT1G48195.1 42.308 78 40 2 192 264 3 80 1.52e-12 63.5

Find 178 sgRNAs with CRISPR-Local

Find 434 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGGTATCAGTGTTTATT+TGG 0.132991 8_3:+26535526 Msa1284340:three_prime_UTR
TCTGAAAATGCCGATGTTTC+TGG 0.134629 8_3:+26532849 Msa1284340:CDS
AAATCTGGCATATGTAAATT+TGG 0.142400 8_3:+26534724 Msa1284340:CDS
GCAAGTTCGATCATCCTATT+TGG 0.183299 8_3:+26531237 Msa1284340:CDS
GTTTCACTTGGAACAATATT+TGG 0.192357 8_3:-26532632 None:intergenic
GGCGACGGCGGCAGCGGCGG+AGG 0.196569 8_3:-26529311 None:intergenic
CTAACAAGAACCTGTAAATT+TGG 0.229682 8_3:+26531206 Msa1284340:CDS
AATCATCAGATAGTTGAATT+TGG 0.238614 8_3:-26533216 None:intergenic
TTGCCCAATTGTACTCAAAA+TGG 0.244916 8_3:-26531069 None:intergenic
CAGTCTCAGGTGGGAGTAAC+AGG 0.258392 8_3:+26534223 Msa1284340:intron
GTACTTCCGGTTTCATATCT+AGG 0.258578 8_3:-26531131 None:intergenic
GCAGCTCTCTCCAAATTTAC+AGG 0.264926 8_3:-26531216 None:intergenic
TGCATTGGGCCCTTCTGTTT+TGG 0.269913 8_3:+26533773 Msa1284340:CDS
TTGTATTCGGGTCGTAATAT+TGG 0.270832 8_3:-26529150 None:intergenic
GGAAGCAGCGGCGGCGGCTT+CGG 0.278346 8_3:-26529200 None:intergenic
CCTGGCCTCTGAGGATAAAT+AGG 0.293250 8_3:-26531158 None:intergenic
AATCTGGCATATGTAAATTT+GGG 0.314408 8_3:+26534725 Msa1284340:CDS
TGCAGACACAGGTGGATTAA+TGG 0.315809 8_3:-26533754 None:intergenic
ATGTAGTTCTACTTGAAAAC+TGG 0.326854 8_3:+26533145 Msa1284340:intron
AGCAGCGGCGACGGCGGCAG+CGG 0.330670 8_3:-26529317 None:intergenic
AGCAAACATACCTCTCTTCT+TGG 0.333259 8_3:-26534835 None:intergenic
CCACCCGCAGGAACCCAAAT+AGG 0.335891 8_3:-26531251 None:intergenic
GCAGTAAGTTTAACATTTGA+TGG 0.341189 8_3:-26534802 None:intergenic
AGCGGCGACGGCGGCAGCGG+CGG 0.341849 8_3:-26529314 None:intergenic
ACAAATTCTTCTGTGTTTGA+TGG 0.349596 8_3:+26533265 Msa1284340:CDS
TGTATTCGGGTCGTAATATT+GGG 0.368508 8_3:-26529149 None:intergenic
TCTGTGTTTGATGGGGCAAT+AGG 0.371334 8_3:+26533274 Msa1284340:CDS
CAAGTTCGATCATCCTATTT+GGG 0.377080 8_3:+26531238 Msa1284340:CDS
TGAGCGAGGAACATTGTATT+CGG 0.381260 8_3:-26529163 None:intergenic
TGTCCATTCTACATGAAAAC+TGG 0.383033 8_3:+26533495 Msa1284340:CDS
AGTTGAATTTGGATATCCTT+GGG 0.383473 8_3:-26533205 None:intergenic
AAAACTGCAACGTGCAAGTT+TGG 0.385103 8_3:+26535246 Msa1284340:CDS
TTTACTGGCAAATGTCTCTC+TGG 0.392923 8_3:+26535504 Msa1284340:three_prime_UTR
ATGCAGTTCTATATGAAATC+TGG 0.398754 8_3:+26534709 Msa1284340:intron
CAAATTCTTCTGTGTTTGAT+GGG 0.399035 8_3:+26533266 Msa1284340:CDS
AATCCACCTGTGTCTGCATT+GGG 0.400528 8_3:+26533759 Msa1284340:CDS
AATGTTAAACTTACTGCTGC+AGG 0.401933 8_3:+26534808 Msa1284340:CDS
AGGTTCTTGTTAGCATATAG+TGG 0.401971 8_3:-26531196 None:intergenic
TAATCCACCTGTGTCTGCAT+TGG 0.404899 8_3:+26533758 Msa1284340:CDS
GCGACGGCGGCAGCGGCGGA+GGG 0.408489 8_3:-26529310 None:intergenic
ATAAATAGGCAAAGTACTTC+CGG 0.408705 8_3:-26531144 None:intergenic
GCCAGTAAAGAAAGTAAAAC+AGG 0.408848 8_3:-26535490 None:intergenic
ATAGTCACCTCTTTCCAATC+TGG 0.419919 8_3:-26531278 None:intergenic
GTGTCAATCTCATGTTGAAT+TGG 0.422955 8_3:-26529003 None:intergenic
AGTGATGTTGTGCGGTCGAT+TGG 0.423384 8_3:-26534769 None:intergenic
ATCTGGTTCTCCAGGTCTCT+CGG 0.423563 8_3:-26532660 None:intergenic
TCGGGTCGTAATATTGGGTC+GGG 0.433275 8_3:-26529144 None:intergenic
GATTTCGACATTGCCCCTCC+TGG 0.433837 8_3:+26529241 Msa1284340:CDS
ATATAAATCAGTTGCAAGTT+CGG 0.434095 8_3:+26533611 Msa1284340:intron
AAGAGGATGTGTTGTAGATT+CGG 0.436282 8_3:-26529084 None:intergenic
GGTCTCCGTTTCTCCTCCAT+TGG 0.438236 8_3:-26535343 None:intergenic
TGGGTCGGGGATGTTGTTGA+TGG 0.438909 8_3:-26529130 None:intergenic
AGCAGCGGCGGCGGCTTCGG+CGG 0.439320 8_3:-26529197 None:intergenic
AATGGAGGAAGCAGCGGCGG+CGG 0.443437 8_3:-26529206 None:intergenic
GCATGATCTCAATATTGTTC+CGG 0.445718 8_3:-26535390 None:intergenic
CGACGGCGGCAGCGGCGGAG+GGG 0.446303 8_3:-26529309 None:intergenic
GAATCTCCACCACTAATCCT+TGG 0.448603 8_3:+26529275 Msa1284340:CDS
TCCATCACTTCTCCTGGTGG+TGG 0.452773 8_3:-26535291 None:intergenic
TAGTTGAATTTGGATATCCT+TGG 0.453102 8_3:-26533206 None:intergenic
GGGATGATTGTAGCGGCAAC+TGG 0.453434 8_3:-26533636 None:intergenic
GTTCTACTCACTGGACAATC+TGG 0.456349 8_3:-26532677 None:intergenic
GCCATCTCCATCACTTCTCC+TGG 0.459226 8_3:-26535297 None:intergenic
CTCTCGGGAAGAGTTTCACT+TGG 0.463041 8_3:-26532644 None:intergenic
TCCTCTTACAACATCCCAAC+CGG 0.466266 8_3:+26529100 Msa1284340:CDS
AGGAGGGGCAATGTCGAAAT+CGG 0.468141 8_3:-26529239 None:intergenic
TACCATTGGATTTGACAGAC+TGG 0.473228 8_3:-26533865 None:intergenic
TCACTTCTCCTGGTGGTGGA+TGG 0.473906 8_3:-26535287 None:intergenic
CATCCTATTTGGGTTCCTGC+GGG 0.475897 8_3:+26531248 Msa1284340:CDS
CGGCGGCGGCTTCGGCGGTG+CGG 0.478211 8_3:-26529192 None:intergenic
TTTGGATATCCTTGGGGTGA+TGG 0.480741 8_3:-26533198 None:intergenic
GAGCGAGGAACATTGTATTC+GGG 0.483277 8_3:-26529162 None:intergenic
TAGTCACCTCTTTCCAATCT+GGG 0.484064 8_3:-26531277 None:intergenic
TCTGGTTCTCCAGGTCTCTC+GGG 0.484418 8_3:-26532659 None:intergenic
AAAACTGGAAAATGTAAATA+CGG 0.484664 8_3:+26533160 Msa1284340:CDS
TCCTCAGAGGCCAGGAGAGA+AGG 0.488900 8_3:+26531166 Msa1284340:CDS
TACTTCCGGTTTCATATCTA+GGG 0.492109 8_3:-26531130 None:intergenic
TGTTGTTGATGGAGCTGCTC+CGG 0.493176 8_3:-26529119 None:intergenic
TGGGCACAATCCTTCTCTCC+TGG 0.495065 8_3:-26531176 None:intergenic
TAGAAGATGAATGAGATATG+AGG 0.497422 8_3:-26528961 None:intergenic
AAATGAGAAAAGGATGGTAT+TGG 0.498703 8_3:-26529028 None:intergenic
ACATCACATTCAATCTGTCC+AGG 0.499616 8_3:-26534265 None:intergenic
AAATGTGCCTGGTTCTGCTC+CGG 0.499853 8_3:+26535371 Msa1284340:CDS
CACTGTCGCATAATAGCAAA+GGG 0.501308 8_3:+26533329 Msa1284340:CDS
TACGACCAATGGAGGAGAAA+CGG 0.501438 8_3:+26535338 Msa1284340:CDS
CTGCGGGTGGAATCCCAGAT+TGG 0.502089 8_3:+26531264 Msa1284340:CDS
ACTATCTATCCTCAGCGCCC+TGG 0.504341 8_3:+26534247 Msa1284340:CDS
CCTATTTATCCTCAGAGGCC+AGG 0.504717 8_3:+26531158 Msa1284340:CDS
AATCTCCACCACTAATCCTT+GGG 0.505009 8_3:+26529276 Msa1284340:CDS
TTGATGGAGCTGCTCCGGTT+GGG 0.506701 8_3:-26529114 None:intergenic
AGCATTCGCCCAAGGATTAG+TGG 0.507557 8_3:-26529284 None:intergenic
ATTTGTTGCAGCAGCGGCGA+CGG 0.508564 8_3:-26529326 None:intergenic
TGGCAAATGTCTCTCTGGAT+TGG 0.508578 8_3:+26535509 Msa1284340:three_prime_UTR
CAAAGGGCTTCCTGTGAGAC+CGG 0.513415 8_3:+26533345 Msa1284340:CDS
AAAATTAATACCGGTCTCAC+AGG 0.514093 8_3:-26533355 None:intergenic
ACTGGACAATCTGGTTCTCC+AGG 0.515598 8_3:-26532668 None:intergenic
GTGATGTTGTGCGGTCGATT+GGG 0.517527 8_3:-26534768 None:intergenic
ACTATACATACCACTCATGT+CGG 0.520546 8_3:-26533657 None:intergenic
GAAACTCTTCCCGAGAGACC+TGG 0.522394 8_3:+26532650 Msa1284340:CDS
TGGCTTACCTGAGAGGCCAC+AGG 0.523921 8_3:+26532869 Msa1284340:CDS
TGTTGCAGCAGCGGCGACGG+CGG 0.524901 8_3:-26529323 None:intergenic
AAGATCAAGTGAAGCGGCAG+AGG 0.526225 8_3:-26529353 None:intergenic
GAGATTCTAGACGCAACTCC+AGG 0.526633 8_3:-26529259 None:intergenic
TTCGGGTCGTAATATTGGGT+CGG 0.526786 8_3:-26529145 None:intergenic
GTTGATGGAGCTGCTCCGGT+TGG 0.526797 8_3:-26529115 None:intergenic
ATCAATATCTAACCGCGCAA+GGG 0.527350 8_3:-26532896 None:intergenic
GATCAATATCTAACCGCGCA+AGG 0.527839 8_3:-26532897 None:intergenic
GGCGACATTTGTTGCAGCAG+CGG 0.532990 8_3:-26529332 None:intergenic
CCTATTTGGGTTCCTGCGGG+TGG 0.532997 8_3:+26531251 Msa1284340:CDS
GAAGAGAAATGAGAAAAGGA+TGG 0.533026 8_3:-26529034 None:intergenic
AAGCGCCCTAGATATGAAAC+CGG 0.536130 8_3:+26531125 Msa1284340:CDS
GGTTTCATATCTAGGGCGCT+TGG 0.536573 8_3:-26531123 None:intergenic
ACCATTGGATTTGACAGACT+GGG 0.537056 8_3:-26533864 None:intergenic
CAATTGGGCAAAACGAAGCT+TGG 0.537177 8_3:+26531081 Msa1284340:CDS
CTATACATACCACTCATGTC+GGG 0.537362 8_3:-26533656 None:intergenic
TTGGTATACGTCGAACTCAC+TGG 0.538046 8_3:+26531100 Msa1284340:CDS
TATTGTTCCGGAGCAGAACC+AGG 0.544228 8_3:-26535378 None:intergenic
GATCTTAAACGCTCTTCTGA+TGG 0.548162 8_3:+26529370 Msa1284340:CDS
TTGTGCGGTCGATTGGGTGA+TGG 0.553158 8_3:-26534762 None:intergenic
TCATCCTATTTGGGTTCCTG+CGG 0.562825 8_3:+26531247 Msa1284340:CDS
TGCGACAGTGGAGATATAAG+AGG 0.563819 8_3:-26533316 None:intergenic
GTTGAGGACGCCAAAACAGA+AGG 0.568271 8_3:-26533783 None:intergenic
ATCTCCATCACTTCTCCTGG+TGG 0.569723 8_3:-26535294 None:intergenic
TTGTACTCAAAATGGATGGA+TGG 0.570115 8_3:-26531061 None:intergenic
TTCTAGACGCAACTCCAGGA+GGG 0.570774 8_3:-26529255 None:intergenic
CCACTGTCGCATAATAGCAA+AGG 0.572283 8_3:+26533328 Msa1284340:CDS
CAAGGAGCTTCTACGACCAA+TGG 0.574215 8_3:+26535327 Msa1284340:CDS
TGAGAAAAGGATGGTATTGG+TGG 0.575776 8_3:-26529025 None:intergenic
GGTTCTTGTTAGCATATAGT+GGG 0.577333 8_3:-26531195 None:intergenic
AAATTCTTCTGTGTTTGATG+GGG 0.579820 8_3:+26533267 Msa1284340:CDS
TCCACCACCAGGAGAAGTGA+TGG 0.581801 8_3:+26535290 Msa1284340:CDS
GAGACCAACGAAAATGTGCC+TGG 0.584891 8_3:+26535360 Msa1284340:CDS
TCAACTGCTAATCTTAACAT+TGG 0.585935 8_3:+26533801 Msa1284340:CDS
TAGTTGACCTACGAAAGTTA+TGG 0.586697 8_3:+26535550 Msa1284340:three_prime_UTR
GAGGGGAAAGCATTCGCCCA+AGG 0.587222 8_3:-26529292 None:intergenic
TCAATATCTAACCGCGCAAG+GGG 0.589144 8_3:-26532895 None:intergenic
ATGTTTCTGGCTTACCTGAG+AGG 0.592119 8_3:+26532862 Msa1284340:CDS
ATGTTAAACTTACTGCTGCA+GGG 0.593446 8_3:+26534809 Msa1284340:CDS
TCCGGTTGGGATGTTGTAAG+AGG 0.594805 8_3:-26529101 None:intergenic
AAATTTGACCATCCACCACC+AGG 0.594941 8_3:+26535279 Msa1284340:CDS
ATCTGGCATATGTAAATTTG+GGG 0.597625 8_3:+26534726 Msa1284340:CDS
ATCGGAGGAGTAGCGAATGG+AGG 0.597874 8_3:-26529221 None:intergenic
CTCAGGTAAGCCAGAAACAT+CGG 0.599049 8_3:-26532859 None:intergenic
TCCTTCTCTCCTGGCCTCTG+AGG 0.599748 8_3:-26531167 None:intergenic
CCCCAGTCTGTCAAATCCAA+TGG 0.601676 8_3:+26533863 Msa1284340:CDS
TCTAGACGCAACTCCAGGAG+GGG 0.602177 8_3:-26529254 None:intergenic
GCGAATGGAGGAAGCAGCGG+CGG 0.603426 8_3:-26529209 None:intergenic
CAATCTGGGATTCCACCCGC+AGG 0.605325 8_3:-26531263 None:intergenic
GTAGCGAATGGAGGAAGCAG+CGG 0.608163 8_3:-26529212 None:intergenic
CTTTGCCTATTTATCCTCAG+AGG 0.609724 8_3:+26531153 Msa1284340:CDS
CATTCTACATGAAAACTGGA+AGG 0.612306 8_3:+26533499 Msa1284340:CDS
GCGTTTAAGATCAAGTGAAG+CGG 0.617066 8_3:-26529359 None:intergenic
TAGTTGACCATAACTTTCGT+AGG 0.618527 8_3:-26535557 None:intergenic
CCAATTGTACTCAAAATGGA+TGG 0.622960 8_3:-26531065 None:intergenic
GTTGAATTTGGATATCCTTG+GGG 0.623377 8_3:-26533204 None:intergenic
GGGCCCAATGCAGACACAGG+TGG 0.623860 8_3:-26533762 None:intergenic
TGGAATCCCAGATTGGAAAG+AGG 0.624036 8_3:+26531271 Msa1284340:CDS
GAAATCGGAGGAGTAGCGAA+TGG 0.628796 8_3:-26529224 None:intergenic
TTGAGGACGCCAAAACAGAA+GGG 0.632080 8_3:-26533782 None:intergenic
GAAGGGCCCAATGCAGACAC+AGG 0.635952 8_3:-26533765 None:intergenic
GGAGCTTCTACGACCAATGG+AGG 0.636687 8_3:+26535330 Msa1284340:CDS
AATGTTAAGATTAGCAGTTG+AGG 0.638653 8_3:-26533799 None:intergenic
ATGGAGATGGCTAAGTCACA+AGG 0.639872 8_3:+26535309 Msa1284340:CDS
TACAATCATCCCGACATGAG+TGG 0.641550 8_3:+26533647 Msa1284340:CDS
ACCAGGAGAAGTGATGGAGA+TGG 0.642505 8_3:+26535296 Msa1284340:CDS
CATCACATTCAATCTGTCCA+GGG 0.642800 8_3:-26534264 None:intergenic
CCATTGGATTTGACAGACTG+GGG 0.644721 8_3:-26533863 None:intergenic
TCAATCTGTCCAGGGCGCTG+AGG 0.644841 8_3:-26534256 None:intergenic
CGGGTCGTAATATTGGGTCG+GGG 0.646912 8_3:-26529143 None:intergenic
AGGGGCAATGTCGAAATCGG+AGG 0.653515 8_3:-26529236 None:intergenic
AGTCTCAGGTGGGAGTAACA+GGG 0.654906 8_3:+26534224 Msa1284340:intron
TGCAGGGTTACCAAGAAGAG+AGG 0.662159 8_3:+26534825 Msa1284340:CDS
ATTCTAGACGCAACTCCAGG+AGG 0.662552 8_3:-26529256 None:intergenic
TCATGTCGGGATGATTGTAG+CGG 0.682500 8_3:-26533643 None:intergenic
ATGCAAATTCCATCACCCCA+AGG 0.686683 8_3:+26533189 Msa1284340:CDS
ACATGTAATGAAATAAAACA+AGG 0.692651 8_3:-26535445 None:intergenic
ATTCGCCCAAGGATTAGTGG+TGG 0.702300 8_3:-26529281 None:intergenic
CCTTTGCTATTATGCGACAG+TGG 0.707348 8_3:-26533328 None:intergenic
CAATATCTAACCGCGCAAGG+GGG 0.713052 8_3:-26532894 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAAAAAGCATAAAA+TGG + chr8_3:26528911-26528930 Msa1284340:five_prime_UTR 10.0%
!! GAAAAAATAAATAAAATTTG+GGG + chr8_3:26530135-26530154 Msa1284340:intron 10.0%
!! AAAAAATAAATAAAATTTGG+GGG + chr8_3:26530136-26530155 Msa1284340:intron 10.0%
!! ATTTAAGAATTCAAATTTAT+AGG - chr8_3:26532552-26532571 None:intergenic 10.0%
!! TGAATTCTTAAATATATAAT+TGG + chr8_3:26532559-26532578 Msa1284340:intron 10.0%
!! ACATAAAATCAATTTATTAA+TGG - chr8_3:26534913-26534932 None:intergenic 10.0%
!! AAAATAAAAACCAAAACAAA+TGG + chr8_3:26529057-26529076 Msa1284340:exon 15.0%
!! TAATTGTTGAATTAAATGAT+TGG + chr8_3:26529599-26529618 Msa1284340:intron 15.0%
!!! TCATTTTCTTAAATTATTAC+CGG - chr8_3:26529762-26529781 None:intergenic 15.0%
!! AAGTAGATATAAAAATGAAA+AGG - chr8_3:26530268-26530287 None:intergenic 15.0%
!! AAGCATATATGAATATATAA+TGG + chr8_3:26531393-26531412 Msa1284340:intron 15.0%
!! ACTACAAATATACATATAAA+CGG - chr8_3:26531445-26531464 None:intergenic 15.0%
!! AAAATCTTAATATGTTATAC+TGG - chr8_3:26532110-26532129 None:intergenic 15.0%
!! CTTAAAGATAAAATTAATAC+CGG - chr8_3:26533367-26533386 None:intergenic 15.0%
!!! AATTTTATCTTTAAGTTCTT+TGG + chr8_3:26533372-26533391 Msa1284340:intron 15.0%
!!! TTGATTTCTGTTTAATTTTA+TGG + chr8_3:26533557-26533576 Msa1284340:intron 15.0%
!!! TGATTTCTGTTTAATTTTAT+GGG + chr8_3:26533558-26533577 Msa1284340:intron 15.0%
!! TTGCTTAAACATAAAATTTA+TGG + chr8_3:26534017-26534036 Msa1284340:intron 15.0%
!! TGCTTAAACATAAAATTTAT+GGG + chr8_3:26534018-26534037 Msa1284340:intron 15.0%
!! AAATTACAATAATCTAAGAA+TGG - chr8_3:26534128-26534147 None:intergenic 15.0%
!! TAATGAAATAGAAATGTAAA+AGG - chr8_3:26534683-26534702 None:intergenic 15.0%
!!! GATAATTGTAGTTGTTTTTA+CGG + chr8_3:26528857-26528876 Msa1284340:five_prime_UTR 20.0%
!!! GTAAAAGTATTATCAAATAG+TGG - chr8_3:26530439-26530458 None:intergenic 20.0%
!!! TTGCTATATTCAATATTTTC+TGG + chr8_3:26530785-26530804 Msa1284340:intron 20.0%
!! CAAAATAACATACATAAATC+TGG - chr8_3:26530828-26530847 None:intergenic 20.0%
!! CATTATTTATACATTTGCTT+TGG + chr8_3:26530996-26531015 Msa1284340:intron 20.0%
!!! ATAATAGAAGTGTATATACA+TGG - chr8_3:26531025-26531044 None:intergenic 20.0%
!! ATTGTATAGTACATTTACTA+TGG + chr8_3:26531335-26531354 Msa1284340:intron 20.0%
!! TTGTATAGTACATTTACTAT+GGG + chr8_3:26531336-26531355 Msa1284340:intron 20.0%
!!! TATATGAATATATAATGGAG+TGG + chr8_3:26531398-26531417 Msa1284340:intron 20.0%
!! AAGGAAACAAAATATAGAAA+AGG - chr8_3:26532024-26532043 None:intergenic 20.0%
!!! TTTATTGGTTGAAATTCATA+TGG + chr8_3:26532946-26532965 Msa1284340:intron 20.0%
!!! TTATTGGTTGAAATTCATAT+GGG + chr8_3:26532947-26532966 Msa1284340:intron 20.0%
!! CTTGAGACATTATTTATATA+TGG + chr8_3:26533102-26533121 Msa1284340:intron 20.0%
!! AAAACTGGAAAATGTAAATA+CGG + chr8_3:26533160-26533179 Msa1284340:CDS 20.0%
!! TATGAATGGTAAAAAAAGTA+AGG - chr8_3:26533592-26533611 None:intergenic 20.0%
!!! TTTTAATTTATATTCCCAAG+AGG + chr8_3:26534145-26534164 Msa1284340:intron 20.0%
!! AATATCACTGGAAAAAAAAA+AGG - chr8_3:26534300-26534319 None:intergenic 20.0%
!! ATGAAGTATAATAATATCAC+TGG - chr8_3:26534312-26534331 None:intergenic 20.0%
!!! CAAATATTTTTAAACCAGAT+CGG - chr8_3:26534561-26534580 None:intergenic 20.0%
!!! TTGCAGTTTTCAAATAATAT+GGG - chr8_3:26535236-26535255 None:intergenic 20.0%
!! ACATGTAATGAAATAAAACA+AGG - chr8_3:26535448-26535467 None:intergenic 20.0%
!!! TTTTGAAGAGAAATGAGAAA+AGG - chr8_3:26529041-26529060 None:intergenic 25.0%
!! GTTTTTGTCTTAGTGATTAA+TGG + chr8_3:26529427-26529446 Msa1284340:intron 25.0%
! ATTAATTATCATGAGTGATG+TGG + chr8_3:26529456-26529475 Msa1284340:intron 25.0%
! TTAATTATCATGAGTGATGT+GGG + chr8_3:26529457-26529476 Msa1284340:intron 25.0%
! TTTGATGAATGATTGATTGT+TGG + chr8_3:26529512-26529531 Msa1284340:intron 25.0%
! AGCATAAGCATTCAATAATT+GGG - chr8_3:26529644-26529663 None:intergenic 25.0%
! AAGCATAAGCATTCAATAAT+TGG - chr8_3:26529645-26529664 None:intergenic 25.0%
! AATGCTTATGCTTAAATGAT+TGG + chr8_3:26529652-26529671 Msa1284340:intron 25.0%
! ATGCTTATGCTTAAATGATT+GGG + chr8_3:26529653-26529672 Msa1284340:intron 25.0%
!!! ACCTTAGTTAGGTTTTTTAA+GGG + chr8_3:26529865-26529884 Msa1284340:intron 25.0%
!!! TGTTATTAAGTTTTATTGCG+AGG + chr8_3:26529951-26529970 Msa1284340:intron 25.0%
! TAGCTATTAGTGTATTGTTA+AGG - chr8_3:26530062-26530081 None:intergenic 25.0%
! TAAAATATATACCAGCTCTT+AGG - chr8_3:26530092-26530111 None:intergenic 25.0%
! CACATAATTTAATGTGTGAT+AGG + chr8_3:26530635-26530654 Msa1284340:intron 25.0%
!!! GATTTAAGTTTTAACTAGCT+TGG + chr8_3:26531687-26531706 Msa1284340:intron 25.0%
! AGAAACTGAATAATAATGAG+TGG + chr8_3:26531719-26531738 Msa1284340:intron 25.0%
!!! GTTCTAAGAATAGAAAAGTT+GGG - chr8_3:26531916-26531935 None:intergenic 25.0%
!!! TGTTCTAAGAATAGAAAAGT+TGG - chr8_3:26531917-26531936 None:intergenic 25.0%
!! TGTTTTACTCACATCAATTA+TGG + chr8_3:26531939-26531958 Msa1284340:intron 25.0%
!! GTTTTACTCACATCAATTAT+GGG + chr8_3:26531940-26531959 Msa1284340:intron 25.0%
! ATAGAAAAGGAAATAAGAGA+AGG - chr8_3:26532011-26532030 None:intergenic 25.0%
! TAAACAGATTTACAAAAGCA+AGG - chr8_3:26532214-26532233 None:intergenic 25.0%
!!! ACTAATGAAGCTGTTTTTTA+TGG + chr8_3:26532235-26532254 Msa1284340:intron 25.0%
!! CTATCAATTTTTGTTCTAGT+AGG + chr8_3:26532389-26532408 Msa1284340:intron 25.0%
! AGCTGATTATATGAATTAAC+AGG - chr8_3:26532484-26532503 None:intergenic 25.0%
!! TAAATATGTTACCTGTGTTT+TGG + chr8_3:26532503-26532522 Msa1284340:intron 25.0%
! AAAACTCAAAAATGCAAGTT+TGG + chr8_3:26532792-26532811 Msa1284340:CDS 25.0%
! TATTCATGCAAAAGATAAAG+AGG - chr8_3:26533082-26533101 None:intergenic 25.0%
! AATCATCAGATAGTTGAATT+TGG - chr8_3:26533219-26533238 None:intergenic 25.0%
!! TGATTTTCTTTTTCTTGAAG+TGG + chr8_3:26533529-26533548 Msa1284340:intron 25.0%
!! GCAACTGATTTATATATGAA+TGG - chr8_3:26533606-26533625 None:intergenic 25.0%
! ATATAAATCAGTTGCAAGTT+CGG + chr8_3:26533611-26533630 Msa1284340:intron 25.0%
!!! CCTTGAAGTTATTGTTTTTT+CGG + chr8_3:26534044-26534063 Msa1284340:intron 25.0%
! TAGTATTACGTGAAAAATGA+TGG + chr8_3:26534394-26534413 Msa1284340:intron 25.0%
! AGTATTACGTGAAAAATGAT+GGG + chr8_3:26534395-26534414 Msa1284340:intron 25.0%
! TTCCCTTATATATCTATTCA+AGG + chr8_3:26534534-26534553 Msa1284340:intron 25.0%
! GTCCTTGAATAGATATATAA+GGG - chr8_3:26534539-26534558 None:intergenic 25.0%
! AAATCTGGCATATGTAAATT+TGG + chr8_3:26534724-26534743 Msa1284340:CDS 25.0%
! AATCTGGCATATGTAAATTT+GGG + chr8_3:26534725-26534744 Msa1284340:CDS 25.0%
!!! ATCTAACTTTTTTTCGTGAA+GGG + chr8_3:26535198-26535217 Msa1284340:intron 25.0%
!! GTTGCAGTTTTCAAATAATA+TGG - chr8_3:26535237-26535256 None:intergenic 25.0%
TAGAAGATGAATGAGATATG+AGG - chr8_3:26528964-26528983 None:intergenic 30.0%
AAATGAGAAAAGGATGGTAT+TGG - chr8_3:26529031-26529050 None:intergenic 30.0%
! ATTCGGTTTTCCATTTGTTT+TGG - chr8_3:26529070-26529089 None:intergenic 30.0%
TGAATGATTGATTGTTGGAA+CGG + chr8_3:26529517-26529536 Msa1284340:intron 30.0%
TGCTTATGCTTAAATGATTG+GGG + chr8_3:26529654-26529673 Msa1284340:intron 30.0%
! ACACCTTCAATTTGAAGTAT+TGG + chr8_3:26529826-26529845 Msa1284340:intron 30.0%
TCTCCAATACTTCAAATTGA+AGG - chr8_3:26529832-26529851 None:intergenic 30.0%
!!! GACCTTAGTTAGGTTTTTTA+AGG + chr8_3:26529864-26529883 Msa1284340:intron 30.0%
TCCCTTAAAAAACCTAACTA+AGG - chr8_3:26529869-26529888 None:intergenic 30.0%
ATGTTGAGATTTACACATGT+AGG - chr8_3:26530204-26530223 None:intergenic 30.0%
TTCTGTGATTATGATTCTAG+TGG + chr8_3:26530308-26530327 Msa1284340:intron 30.0%
AAATAAGAAGTCAACTCTAG+AGG - chr8_3:26530718-26530737 None:intergenic 30.0%
!! CATCCATTTTGAGTACAATT+GGG + chr8_3:26531066-26531085 Msa1284340:CDS 30.0%
! ATAAATAGGCAAAGTACTTC+CGG - chr8_3:26531147-26531166 None:intergenic 30.0%
CTAACAAGAACCTGTAAATT+TGG + chr8_3:26531206-26531225 Msa1284340:CDS 30.0%
CTGACATACATTGAAATCAA+AGG - chr8_3:26531472-26531491 None:intergenic 30.0%
! ACGATCATTTTATGTAGATC+TGG - chr8_3:26531802-26531821 None:intergenic 30.0%
ATGATCGTCCACTAATTATT+TGG + chr8_3:26531814-26531833 Msa1284340:intron 30.0%
TCAACTACGTTTATAATGAG+AGG - chr8_3:26531841-26531860 None:intergenic 30.0%
! TTTCCTTTTTCTGTCACAAA+GGG + chr8_3:26532037-26532056 Msa1284340:intron 30.0%
CTAGTAAGAGCTTATGATTT+AGG + chr8_3:26532145-26532164 Msa1284340:intron 30.0%
GCAAGGAAATAAAAAGAAAG+TGG - chr8_3:26532197-26532216 None:intergenic 30.0%
ACATATATCAGTCAATGCAA+TGG + chr8_3:26532308-26532327 Msa1284340:intron 30.0%
GGTTTATTCATAACTGCTTT+AGG + chr8_3:26532607-26532626 Msa1284340:intron 30.0%
GTTTCACTTGGAACAATATT+TGG - chr8_3:26532635-26532654 None:intergenic 30.0%
TCGATTCTACTAAATCATGT+AGG - chr8_3:26532994-26533013 None:intergenic 30.0%
! ATGTAGTTCTACTTGAAAAC+TGG + chr8_3:26533145-26533164 Msa1284340:intron 30.0%
AGTTGAATTTGGATATCCTT+GGG - chr8_3:26533208-26533227 None:intergenic 30.0%
TAGTTGAATTTGGATATCCT+TGG - chr8_3:26533209-26533228 None:intergenic 30.0%
ACAAATTCTTCTGTGTTTGA+TGG + chr8_3:26533265-26533284 Msa1284340:CDS 30.0%
CAAATTCTTCTGTGTTTGAT+GGG + chr8_3:26533266-26533285 Msa1284340:CDS 30.0%
AAATTCTTCTGTGTTTGATG+GGG + chr8_3:26533267-26533286 Msa1284340:CDS 30.0%
CATTTCATATGTTTGTGCTT+TGG + chr8_3:26533726-26533745 Msa1284340:intron 30.0%
AATGTTAAGATTAGCAGTTG+AGG - chr8_3:26533802-26533821 None:intergenic 30.0%
TCAACTGCTAATCTTAACAT+TGG + chr8_3:26533801-26533820 Msa1284340:CDS 30.0%
ATAAACTTCCACATTACCAT+TGG - chr8_3:26533882-26533901 None:intergenic 30.0%
TTATACTGTACTAAATCTCG+TGG + chr8_3:26533898-26533917 Msa1284340:intron 30.0%
CCGAAAAAACAATAACTTCA+AGG - chr8_3:26534047-26534066 None:intergenic 30.0%
CAGAGAAATAAAAGCAACAA+AGG - chr8_3:26534362-26534381 None:intergenic 30.0%
!! TTGCTTTTATTTCTCTGCTT+AGG + chr8_3:26534365-26534384 Msa1284340:intron 30.0%
GTATTACGTGAAAAATGATG+GGG + chr8_3:26534396-26534415 Msa1284340:intron 30.0%
TATTACGTGAAAAATGATGG+GGG + chr8_3:26534397-26534416 Msa1284340:intron 30.0%
TAAACAGATAGATTGTCAAG+CGG - chr8_3:26534439-26534458 None:intergenic 30.0%
GAAGACTACTAACATACTTT+AGG + chr8_3:26534461-26534480 Msa1284340:intron 30.0%
! TATATAAGGGAAGAAGTACA+AGG - chr8_3:26534526-26534545 None:intergenic 30.0%
GGTCCTTGAATAGATATATA+AGG - chr8_3:26534540-26534559 None:intergenic 30.0%
AGATTTCATATAGAACTGCA+TGG - chr8_3:26534710-26534729 None:intergenic 30.0%
ATGCAGTTCTATATGAAATC+TGG + chr8_3:26534709-26534728 Msa1284340:intron 30.0%
ATCTGGCATATGTAAATTTG+GGG + chr8_3:26534726-26534745 Msa1284340:CDS 30.0%
GCAGTAAGTTTAACATTTGA+TGG - chr8_3:26534805-26534824 None:intergenic 30.0%
! TATGTTTCCAAAAAAGTGCA+TGG + chr8_3:26534928-26534947 Msa1284340:intron 30.0%
TTAACAATCAGCATCTACTA+AGG - chr8_3:26535002-26535021 None:intergenic 30.0%
GCTGCTAAAAATGAAGTTAA+TGG - chr8_3:26535089-26535108 None:intergenic 30.0%
GAATCTCTGATAAAAATCTG+AGG - chr8_3:26535126-26535145 None:intergenic 30.0%
!!! CATCTAACTTTTTTTCGTGA+AGG + chr8_3:26535197-26535216 Msa1284340:intron 30.0%
! ACCTGTTTTACTTTCTTTAC+TGG + chr8_3:26535489-26535508 Msa1284340:three_prime_UTR 30.0%
GATTGGTATCAGTGTTTATT+TGG + chr8_3:26535526-26535545 Msa1284340:three_prime_UTR 30.0%
GTGTCAATCTCATGTTGAAT+TGG - chr8_3:26529006-26529025 None:intergenic 35.0%
GAAGAGAAATGAGAAAAGGA+TGG - chr8_3:26529037-26529056 None:intergenic 35.0%
AAGAGGATGTGTTGTAGATT+CGG - chr8_3:26529087-26529106 None:intergenic 35.0%
TGTATTCGGGTCGTAATATT+GGG - chr8_3:26529152-26529171 None:intergenic 35.0%
TTGTATTCGGGTCGTAATAT+TGG - chr8_3:26529153-26529172 None:intergenic 35.0%
TATGCTTAAATGATTGGGGA+AGG + chr8_3:26529658-26529677 Msa1284340:intron 35.0%
ATGCTTAAATGATTGGGGAA+GGG + chr8_3:26529659-26529678 Msa1284340:intron 35.0%
TAAATTATTACCGGCGTCTA+AGG - chr8_3:26529753-26529772 None:intergenic 35.0%
!! GAAGTATTGGAGATGAAGAA+TGG + chr8_3:26529839-26529858 Msa1284340:intron 35.0%
!!! AAGTTTTATTGCGAGGTTAG+AGG + chr8_3:26529958-26529977 Msa1284340:intron 35.0%
!! GAATTCACCTCTTTAGTTCT+GGG + chr8_3:26529984-26530003 Msa1284340:intron 35.0%
!! AATTCACCTCTTTAGTTCTG+GGG + chr8_3:26529985-26530004 Msa1284340:intron 35.0%
TATATACCAGCTCTTAGGAA+TGG - chr8_3:26530087-26530106 None:intergenic 35.0%
GATTATGATTCTAGTGGCAT+TGG + chr8_3:26530314-26530333 Msa1284340:intron 35.0%
! ATTTGACAGCATTGAGTTCT+AGG + chr8_3:26530542-26530561 Msa1284340:intron 35.0%
!! TGAGTTCTAGGAATTATGCA+CGG + chr8_3:26530554-26530573 Msa1284340:intron 35.0%
TCTTTGCTAATGTTCTACAC+AGG - chr8_3:26530593-26530612 None:intergenic 35.0%
CTAACCAAACTTCAAACAGA+AGG + chr8_3:26530755-26530774 Msa1284340:intron 35.0%
TTGTACTCAAAATGGATGGA+TGG - chr8_3:26531064-26531083 None:intergenic 35.0%
CCAATTGTACTCAAAATGGA+TGG - chr8_3:26531068-26531087 None:intergenic 35.0%
!! CCATCCATTTTGAGTACAAT+TGG + chr8_3:26531065-26531084 Msa1284340:CDS 35.0%
TTGCCCAATTGTACTCAAAA+TGG - chr8_3:26531072-26531091 None:intergenic 35.0%
TACTTCCGGTTTCATATCTA+GGG - chr8_3:26531133-26531152 None:intergenic 35.0%
GGTTCTTGTTAGCATATAGT+GGG - chr8_3:26531198-26531217 None:intergenic 35.0%
AGGTTCTTGTTAGCATATAG+TGG - chr8_3:26531199-26531218 None:intergenic 35.0%
CAAGTTCGATCATCCTATTT+GGG + chr8_3:26531238-26531257 Msa1284340:CDS 35.0%
CGATTTATATGCTCCATCTT+GGG - chr8_3:26531647-26531666 None:intergenic 35.0%
ACGATTTATATGCTCCATCT+TGG - chr8_3:26531648-26531667 None:intergenic 35.0%
TGAGAGGACCAAATAATTAG+TGG - chr8_3:26531825-26531844 None:intergenic 35.0%
ATGCAATGTGTAAAGCAGTT+TGG + chr8_3:26531860-26531879 Msa1284340:intron 35.0%
CACATCAATTATGGGAAAGT+TGG + chr8_3:26531948-26531967 Msa1284340:intron 35.0%
! GTTTCCTTTTTCTGTCACAA+AGG + chr8_3:26532036-26532055 Msa1284340:intron 35.0%
TTGAGAAACCTGTATCAATC+AGG + chr8_3:26532069-26532088 Msa1284340:intron 35.0%
TTATGATTTAGGAGCTGTGA+TGG + chr8_3:26532156-26532175 Msa1284340:intron 35.0%
! AAATTTAGGATGTGTGTGAG+AGG + chr8_3:26532425-26532444 Msa1284340:intron 35.0%
!! CTGATTTGTTATGATGTACG+TGG + chr8_3:26532586-26532605 Msa1284340:intron 35.0%
! CTAGCAACACACTAGTTTAT+TGG + chr8_3:26532931-26532950 Msa1284340:intron 35.0%
CTCAACATACACTCTTCTAT+TGG - chr8_3:26533029-26533048 None:intergenic 35.0%
GTTGAATTTGGATATCCTTG+GGG - chr8_3:26533207-26533226 None:intergenic 35.0%
AAAATTAATACCGGTCTCAC+AGG - chr8_3:26533358-26533377 None:intergenic 35.0%
! GGTACAAATATTTGCTGACA+GGG + chr8_3:26533462-26533481 Msa1284340:intron 35.0%
! GTACAAATATTTGCTGACAG+GGG + chr8_3:26533463-26533482 Msa1284340:intron 35.0%
! TACAAATATTTGCTGACAGG+GGG + chr8_3:26533464-26533483 Msa1284340:intron 35.0%
TGTCCATTCTACATGAAAAC+TGG + chr8_3:26533495-26533514 Msa1284340:CDS 35.0%
! CTTCCAGTTTTCATGTAGAA+TGG - chr8_3:26533501-26533520 None:intergenic 35.0%
CATTCTACATGAAAACTGGA+AGG + chr8_3:26533499-26533518 Msa1284340:CDS 35.0%
ACTATACATACCACTCATGT+CGG - chr8_3:26533660-26533679 None:intergenic 35.0%
TGAGTGGTATGTATAGTGTT+TGG + chr8_3:26533663-26533682 Msa1284340:intron 35.0%
! TGTCAAATCCAATGGTAATG+TGG + chr8_3:26533871-26533890 Msa1284340:intron 35.0%
TTAGACTTCCAAGTATGTTC+TGG - chr8_3:26534177-26534196 None:intergenic 35.0%
GAAGTCTAATTCATCTCATC+TGG + chr8_3:26534188-26534207 Msa1284340:intron 35.0%
! TTCATTGCCCAATATCGATT+AGG + chr8_3:26534327-26534346 Msa1284340:intron 35.0%
! TCATTGCCCAATATCGATTA+GGG + chr8_3:26534328-26534347 Msa1284340:intron 35.0%
AGTGATCCCTAATCGATATT+GGG - chr8_3:26534337-26534356 None:intergenic 35.0%
AAGTGATCCCTAATCGATAT+TGG - chr8_3:26534338-26534357 None:intergenic 35.0%
! ATTACGTGAAAAATGATGGG+GGG + chr8_3:26534398-26534417 Msa1284340:intron 35.0%
!!! TTTTGGGTTAAGACCAGTAA+TGG - chr8_3:26534503-26534522 None:intergenic 35.0%
TTCGTGAAGTTTGAACAACA+GGG - chr8_3:26534599-26534618 None:intergenic 35.0%
AATGTTAAACTTACTGCTGC+AGG + chr8_3:26534808-26534827 Msa1284340:CDS 35.0%
ATGTTAAACTTACTGCTGCA+GGG + chr8_3:26534809-26534828 Msa1284340:CDS 35.0%
!!! CAAGTAACCATGCACTTTTT+TGG - chr8_3:26534938-26534957 None:intergenic 35.0%
! CAAAAAAGTGCATGGTTACT+TGG + chr8_3:26534936-26534955 Msa1284340:intron 35.0%
GCATGATCTCAATATTGTTC+CGG - chr8_3:26535393-26535412 None:intergenic 35.0%
GCCAGTAAAGAAAGTAAAAC+AGG - chr8_3:26535493-26535512 None:intergenic 35.0%
TAGTTGACCTACGAAAGTTA+TGG + chr8_3:26535550-26535569 Msa1284340:three_prime_UTR 35.0%
TAGTTGACCATAACTTTCGT+AGG - chr8_3:26535560-26535579 None:intergenic 35.0%
! TGAGAAAAGGATGGTATTGG+TGG - chr8_3:26529028-26529047 None:intergenic 40.0%
TGAGCGAGGAACATTGTATT+CGG - chr8_3:26529166-26529185 None:intergenic 40.0%
AATCTCCACCACTAATCCTT+GGG + chr8_3:26529276-26529295 Msa1284340:CDS 40.0%
! GCGTTTAAGATCAAGTGAAG+CGG - chr8_3:26529362-26529381 None:intergenic 40.0%
GATCTTAAACGCTCTTCTGA+TGG + chr8_3:26529370-26529389 Msa1284340:CDS 40.0%
!!! TGTTGGAACGGTTTTAGAGT+TGG + chr8_3:26529529-26529548 Msa1284340:intron 40.0%
GTATTGGAGATGAAGAATGG+TGG + chr8_3:26529842-26529861 Msa1284340:intron 40.0%
!! AAGAATGGTGGACCTTAGTT+AGG + chr8_3:26529854-26529873 Msa1284340:intron 40.0%
! CGAATTCACCTCTTTAGTTC+TGG + chr8_3:26529983-26530002 Msa1284340:intron 40.0%
!! ATTCACCTCTTTAGTTCTGG+GGG + chr8_3:26529986-26530005 Msa1284340:intron 40.0%
GTGTATCTCATATTCGACTC+TGG - chr8_3:26530034-26530053 None:intergenic 40.0%
GAGTCGAATATGAGATACAC+TGG + chr8_3:26530034-26530053 Msa1284340:intron 40.0%
TTATGCACGGTACGAATTTG+TGG + chr8_3:26530567-26530586 Msa1284340:intron 40.0%
! TGTGCCTTCTGTTTGAAGTT+TGG - chr8_3:26530762-26530781 None:intergenic 40.0%
GTACTTCCGGTTTCATATCT+AGG - chr8_3:26531134-26531153 None:intergenic 40.0%
CTTTGCCTATTTATCCTCAG+AGG + chr8_3:26531153-26531172 Msa1284340:CDS 40.0%
GCAAGTTCGATCATCCTATT+TGG + chr8_3:26531237-26531256 Msa1284340:CDS 40.0%
TAGTCACCTCTTTCCAATCT+GGG - chr8_3:26531280-26531299 None:intergenic 40.0%
ATAGTCACCTCTTTCCAATC+TGG - chr8_3:26531281-26531300 None:intergenic 40.0%
! CTCAACATTTTGTCCCAAGA+TGG + chr8_3:26531631-26531650 Msa1284340:intron 40.0%
TCACCCTTTGTGACAGAAAA+AGG - chr8_3:26532043-26532062 None:intergenic 40.0%
ACACAGTTCCTGATTGATAC+AGG - chr8_3:26532080-26532099 None:intergenic 40.0%
AGTCAATGCAATGGTGAATG+TGG + chr8_3:26532317-26532336 Msa1284340:intron 40.0%
GATCCAGTGCGAAGAAATTT+AGG + chr8_3:26532411-26532430 Msa1284340:intron 40.0%
CATCCTAAATTTCTTCGCAC+TGG - chr8_3:26532417-26532436 None:intergenic 40.0%
!!! ACCTGTGTTTTGGTTGCAAA+AGG + chr8_3:26532513-26532532 Msa1284340:intron 40.0%
! ACCTTTTGCAACCAAAACAC+AGG - chr8_3:26532517-26532536 None:intergenic 40.0%
TAATTGCGAGTTCTACTCAC+TGG - chr8_3:26532689-26532708 None:intergenic 40.0%
! GCATTTTCAGAGGGAACATT+TGG - chr8_3:26532840-26532859 None:intergenic 40.0%
! GAAACATCGGCATTTTCAGA+GGG - chr8_3:26532849-26532868 None:intergenic 40.0%
! AGAAACATCGGCATTTTCAG+AGG - chr8_3:26532850-26532869 None:intergenic 40.0%
TCTGAAAATGCCGATGTTTC+TGG + chr8_3:26532849-26532868 Msa1284340:CDS 40.0%
ATCAATATCTAACCGCGCAA+GGG - chr8_3:26532899-26532918 None:intergenic 40.0%
CACTGTCGCATAATAGCAAA+GGG + chr8_3:26533329-26533348 Msa1284340:CDS 40.0%
TATTTGTACCGTGAAAAGCC+AGG - chr8_3:26533452-26533471 None:intergenic 40.0%
! CGGTACAAATATTTGCTGAC+AGG + chr8_3:26533461-26533480 Msa1284340:intron 40.0%
CTATACATACCACTCATGTC+GGG - chr8_3:26533659-26533678 None:intergenic 40.0%
GCTTGATAAAAAGAAGCAGC+TGG - chr8_3:26533837-26533856 None:intergenic 40.0%
ACCATTGGATTTGACAGACT+GGG - chr8_3:26533867-26533886 None:intergenic 40.0%
TACCATTGGATTTGACAGAC+TGG - chr8_3:26533868-26533887 None:intergenic 40.0%
!! TCGGTGTACTACTTTTGCAA+TGG + chr8_3:26534063-26534082 Msa1284340:intron 40.0%
! TGTTCTGGTTGATACCTCTT+GGG - chr8_3:26534162-26534181 None:intergenic 40.0%
! ATGTTCTGGTTGATACCTCT+TGG - chr8_3:26534163-26534182 None:intergenic 40.0%
GGTATCAACCAGAACATACT+TGG + chr8_3:26534166-26534185 Msa1284340:intron 40.0%
!! GCTATTTGTTTTCCAGTCTC+AGG + chr8_3:26534210-26534229 Msa1284340:intron 40.0%
!! ATTTGTTTTCCAGTCTCAGG+TGG + chr8_3:26534213-26534232 Msa1284340:intron 40.0%
!! TTTGTTTTCCAGTCTCAGGT+GGG + chr8_3:26534214-26534233 Msa1284340:intron 40.0%
CATCACATTCAATCTGTCCA+GGG - chr8_3:26534267-26534286 None:intergenic 40.0%
ACATCACATTCAATCTGTCC+AGG - chr8_3:26534268-26534287 None:intergenic 40.0%
CTAACATACTTTAGGCTTCC+AGG + chr8_3:26534469-26534488 Msa1284340:intron 40.0%
!! GGGAAGAAGTACAAGGTTTT+GGG - chr8_3:26534519-26534538 None:intergenic 40.0%
!! AGGGAAGAAGTACAAGGTTT+TGG - chr8_3:26534520-26534539 None:intergenic 40.0%
TATCTATTCAAGGACCGATC+TGG + chr8_3:26534544-26534563 Msa1284340:intron 40.0%
CTTCGTGAAGTTTGAACAAC+AGG - chr8_3:26534600-26534619 None:intergenic 40.0%
! CAGATGTTTTATGCAGAGAC+TGG - chr8_3:26534656-26534675 None:intergenic 40.0%
!! GTTTTGACAGTGATGTTGTG+CGG - chr8_3:26534780-26534799 None:intergenic 40.0%
AGCAAACATACCTCTCTTCT+TGG - chr8_3:26534838-26534857 None:intergenic 40.0%
! TTTTTACGTACTGCGTGTGA+TGG + chr8_3:26534960-26534979 Msa1284340:intron 40.0%
CAATCAGCATCTACTAAGGA+TGG - chr8_3:26534998-26535017 None:intergenic 40.0%
AAAACTGCAACGTGCAAGTT+TGG + chr8_3:26535246-26535265 Msa1284340:CDS 40.0%
TTTACTGGCAAATGTCTCTC+TGG + chr8_3:26535504-26535523 Msa1284340:three_prime_UTR 40.0%
TCCTCTTACAACATCCCAAC+CGG + chr8_3:26529100-26529119 Msa1284340:CDS 45.0%
TTCGGGTCGTAATATTGGGT+CGG - chr8_3:26529148-26529167 None:intergenic 45.0%
GAGCGAGGAACATTGTATTC+GGG - chr8_3:26529165-26529184 None:intergenic 45.0%
GAATCTCCACCACTAATCCT+TGG + chr8_3:26529275-26529294 Msa1284340:CDS 45.0%
CTAATTTACAACCGTCCCGA+CGG + chr8_3:26529712-26529731 Msa1284340:intron 45.0%
TAATTTACAACCGTCCCGAC+GGG + chr8_3:26529713-26529732 Msa1284340:intron 45.0%
ATTCTCCCCCAGAACTAAAG+AGG - chr8_3:26529994-26530013 None:intergenic 45.0%
!! TCTTTAGTTCTGGGGGAGAA+TGG + chr8_3:26529993-26530012 Msa1284340:intron 45.0%
GGATCTTCTCTATGACAGGT+GGG - chr8_3:26530172-26530191 None:intergenic 45.0%
! TAGCGGATCTTCTCTATGAC+AGG - chr8_3:26530176-26530195 None:intergenic 45.0%
TCATAGAGAAGATCCGCTAC+TGG + chr8_3:26530177-26530196 Msa1284340:intron 45.0%
TACACATGTAGGACCAGTAG+CGG - chr8_3:26530193-26530212 None:intergenic 45.0%
GCAATAACCAATGCACGCAT+GGG - chr8_3:26530228-26530247 None:intergenic 45.0%
TGCAATAACCAATGCACGCA+TGG - chr8_3:26530229-26530248 None:intergenic 45.0%
!! GATTCTAGTGGCATTGGCTT+AGG + chr8_3:26530320-26530339 Msa1284340:intron 45.0%
AGCACTGTAGTCTGTAGTCA+CGG - chr8_3:26530412-26530431 None:intergenic 45.0%
CTGTCAAATAGCAGCCATAG+TGG - chr8_3:26530531-26530550 None:intergenic 45.0%
CAATTGGGCAAAACGAAGCT+TGG + chr8_3:26531081-26531100 Msa1284340:CDS 45.0%
TTGGTATACGTCGAACTCAC+TGG + chr8_3:26531100-26531119 Msa1284340:CDS 45.0%
AAGCGCCCTAGATATGAAAC+CGG + chr8_3:26531125-26531144 Msa1284340:CDS 45.0%
GCAGCTCTCTCCAAATTTAC+AGG - chr8_3:26531219-26531238 None:intergenic 45.0%
! TCATCCTATTTGGGTTCCTG+CGG + chr8_3:26531247-26531266 Msa1284340:CDS 45.0%
TGGAATCCCAGATTGGAAAG+AGG + chr8_3:26531271-26531290 Msa1284340:CDS 45.0%
GTTCTACTCACTGGACAATC+TGG - chr8_3:26532680-26532699 None:intergenic 45.0%
CTCAGGTAAGCCAGAAACAT+CGG - chr8_3:26532862-26532881 None:intergenic 45.0%
!! ATGTTTCTGGCTTACCTGAG+AGG + chr8_3:26532862-26532881 Msa1284340:CDS 45.0%
TCAATATCTAACCGCGCAAG+GGG - chr8_3:26532898-26532917 None:intergenic 45.0%
GATCAATATCTAACCGCGCA+AGG - chr8_3:26532900-26532919 None:intergenic 45.0%
TGGGTTCCACTGAGTTTATG+TGG + chr8_3:26532966-26532985 Msa1284340:intron 45.0%
ATGCAAATTCCATCACCCCA+AGG + chr8_3:26533189-26533208 Msa1284340:CDS 45.0%
TTTGGATATCCTTGGGGTGA+TGG - chr8_3:26533201-26533220 None:intergenic 45.0%
TCTGTGTTTGATGGGGCAAT+AGG + chr8_3:26533274-26533293 Msa1284340:CDS 45.0%
TGCGACAGTGGAGATATAAG+AGG - chr8_3:26533319-26533338 None:intergenic 45.0%
!! CCTTTGCTATTATGCGACAG+TGG - chr8_3:26533331-26533350 None:intergenic 45.0%
CCACTGTCGCATAATAGCAA+AGG + chr8_3:26533328-26533347 Msa1284340:CDS 45.0%
TCATGTCGGGATGATTGTAG+CGG - chr8_3:26533646-26533665 None:intergenic 45.0%
TACAATCATCCCGACATGAG+TGG + chr8_3:26533647-26533666 Msa1284340:CDS 45.0%
!! TGCAGACACAGGTGGATTAA+TGG - chr8_3:26533757-26533776 None:intergenic 45.0%
TAATCCACCTGTGTCTGCAT+TGG + chr8_3:26533758-26533777 Msa1284340:CDS 45.0%
AATCCACCTGTGTCTGCATT+GGG + chr8_3:26533759-26533778 Msa1284340:CDS 45.0%
TTGAGGACGCCAAAACAGAA+GGG - chr8_3:26533785-26533804 None:intergenic 45.0%
CCATTGGATTTGACAGACTG+GGG - chr8_3:26533866-26533885 None:intergenic 45.0%
TGCTCATTCTTGTGGGGTAT+GGG + chr8_3:26533966-26533985 Msa1284340:intron 45.0%
! TGAAAAATGATGGGGGGCTA+GGG + chr8_3:26534404-26534423 Msa1284340:intron 45.0%
AAATTTGACCATCCACCACC+AGG + chr8_3:26535279-26535298 Msa1284340:CDS 45.0%
ATGGAGATGGCTAAGTCACA+AGG + chr8_3:26535309-26535328 Msa1284340:CDS 45.0%
TACGACCAATGGAGGAGAAA+CGG + chr8_3:26535338-26535357 Msa1284340:CDS 45.0%
! AGAACCAGGCACATTTTCGT+TGG - chr8_3:26535367-26535386 None:intergenic 45.0%
TGGCAAATGTCTCTCTGGAT+TGG + chr8_3:26535509-26535528 Msa1284340:three_prime_UTR 45.0%
!! ATGAAAAAATAAATAAAATT+TGG + chr8_3:26530133-26530152 Msa1284340:intron 5.0%
!! TGAAAAAATAAATAAAATTT+GGG + chr8_3:26530134-26530153 Msa1284340:intron 5.0%
!!! AATAAAAATATAATTTTCAT+AGG - chr8_3:26531318-26531337 None:intergenic 5.0%
!!! TTTTTTTTTATTTTTACAAA+TGG - chr8_3:26535619-26535638 None:intergenic 5.0%
TCCGGTTGGGATGTTGTAAG+AGG - chr8_3:26529104-26529123 None:intergenic 50.0%
! TGTTGTTGATGGAGCTGCTC+CGG - chr8_3:26529122-26529141 None:intergenic 50.0%
TCGGGTCGTAATATTGGGTC+GGG - chr8_3:26529147-26529166 None:intergenic 50.0%
GAAATCGGAGGAGTAGCGAA+TGG - chr8_3:26529227-26529246 None:intergenic 50.0%
AGGAGGGGCAATGTCGAAAT+CGG - chr8_3:26529242-26529261 None:intergenic 50.0%
TTCTAGACGCAACTCCAGGA+GGG - chr8_3:26529258-26529277 None:intergenic 50.0%
ATTCTAGACGCAACTCCAGG+AGG - chr8_3:26529259-26529278 None:intergenic 50.0%
GAGATTCTAGACGCAACTCC+AGG - chr8_3:26529262-26529281 None:intergenic 50.0%
! ATTCGCCCAAGGATTAGTGG+TGG - chr8_3:26529284-26529303 None:intergenic 50.0%
AGCATTCGCCCAAGGATTAG+TGG - chr8_3:26529287-26529306 None:intergenic 50.0%
AAGATCAAGTGAAGCGGCAG+AGG - chr8_3:26529356-26529375 None:intergenic 50.0%
TTCCCAGTTCAAATCCCGTC+GGG - chr8_3:26529730-26529749 None:intergenic 50.0%
GTTCCCAGTTCAAATCCCGT+CGG - chr8_3:26529731-26529750 None:intergenic 50.0%
TCTATGACAGGTGGGAGACA+TGG - chr8_3:26530164-26530183 None:intergenic 50.0%
CGGATCTTCTCTATGACAGG+TGG - chr8_3:26530173-26530192 None:intergenic 50.0%
CAACATTCCCATGCGTGCAT+TGG + chr8_3:26530218-26530237 Msa1284340:intron 50.0%
!! TCTAGTGGCATTGGCTTAGG+TGG + chr8_3:26530323-26530342 Msa1284340:intron 50.0%
!! CTAGTGGCATTGGCTTAGGT+GGG + chr8_3:26530324-26530343 Msa1284340:intron 50.0%
!! TAGTGGCATTGGCTTAGGTG+GGG + chr8_3:26530325-26530344 Msa1284340:intron 50.0%
CACCATATGTAGCGCCACTA+TGG + chr8_3:26530514-26530533 Msa1284340:intron 50.0%
AGCCATAGTGGCGCTACATA+TGG - chr8_3:26530519-26530538 None:intergenic 50.0%
! GGTTTCATATCTAGGGCGCT+TGG - chr8_3:26531126-26531145 None:intergenic 50.0%
! CCTGGCCTCTGAGGATAAAT+AGG - chr8_3:26531161-26531180 None:intergenic 50.0%
CCTATTTATCCTCAGAGGCC+AGG + chr8_3:26531158-26531177 Msa1284340:CDS 50.0%
! CATCCTATTTGGGTTCCTGC+GGG + chr8_3:26531248-26531267 Msa1284340:CDS 50.0%
CTCTCGGGAAGAGTTTCACT+TGG - chr8_3:26532647-26532666 None:intergenic 50.0%
!! ATCTGGTTCTCCAGGTCTCT+CGG - chr8_3:26532663-26532682 None:intergenic 50.0%
!! ACTGGACAATCTGGTTCTCC+AGG - chr8_3:26532671-26532690 None:intergenic 50.0%
CAATATCTAACCGCGCAAGG+GGG - chr8_3:26532897-26532916 None:intergenic 50.0%
TAGGCGCCACATAAACTCAG+TGG - chr8_3:26532975-26532994 None:intergenic 50.0%
ACCTAAACATCGCCTAAGCC+TGG + chr8_3:26533431-26533450 Msa1284340:intron 50.0%
TACCGTGAAAAGCCAGGCTT+AGG - chr8_3:26533446-26533465 None:intergenic 50.0%
! TATTTGCTGACAGGGGGAAG+TGG + chr8_3:26533470-26533489 Msa1284340:intron 50.0%
! TGCATTGGGCCCTTCTGTTT+TGG + chr8_3:26533773-26533792 Msa1284340:CDS 50.0%
GTTGAGGACGCCAAAACAGA+AGG - chr8_3:26533786-26533805 None:intergenic 50.0%
CCCCAGTCTGTCAAATCCAA+TGG + chr8_3:26533863-26533882 Msa1284340:CDS 50.0%
ACACCTGCTGCTCATTCTTG+TGG + chr8_3:26533958-26533977 Msa1284340:intron 50.0%
CACCTGCTGCTCATTCTTGT+GGG + chr8_3:26533959-26533978 Msa1284340:intron 50.0%
ACCTGCTGCTCATTCTTGTG+GGG + chr8_3:26533960-26533979 Msa1284340:intron 50.0%
CTGCTCATTCTTGTGGGGTA+TGG + chr8_3:26533965-26533984 Msa1284340:intron 50.0%
AGTCTCAGGTGGGAGTAACA+GGG + chr8_3:26534224-26534243 Msa1284340:intron 50.0%
! GTGAAAAATGATGGGGGGCT+AGG + chr8_3:26534403-26534422 Msa1284340:intron 50.0%
! GAAAAATGATGGGGGGCTAG+GGG + chr8_3:26534405-26534424 Msa1284340:intron 50.0%
! CCAGTAATGGAATGAGCTCC+TGG - chr8_3:26534490-26534509 None:intergenic 50.0%
CCAGGAGCTCATTCCATTAC+TGG + chr8_3:26534487-26534506 Msa1284340:intron 50.0%
GTGATGTTGTGCGGTCGATT+GGG - chr8_3:26534771-26534790 None:intergenic 50.0%
AGTGATGTTGTGCGGTCGAT+TGG - chr8_3:26534772-26534791 None:intergenic 50.0%
TGCAGGGTTACCAAGAAGAG+AGG + chr8_3:26534825-26534844 Msa1284340:CDS 50.0%
ATCTCCATCACTTCTCCTGG+TGG - chr8_3:26535297-26535316 None:intergenic 50.0%
! ACCAGGAGAAGTGATGGAGA+TGG + chr8_3:26535296-26535315 Msa1284340:CDS 50.0%
CAAGGAGCTTCTACGACCAA+TGG + chr8_3:26535327-26535346 Msa1284340:CDS 50.0%
GAGACCAACGAAAATGTGCC+TGG + chr8_3:26535360-26535379 Msa1284340:CDS 50.0%
!! AAATGTGCCTGGTTCTGCTC+CGG + chr8_3:26535371-26535390 Msa1284340:CDS 50.0%
TATTGTTCCGGAGCAGAACC+AGG - chr8_3:26535381-26535400 None:intergenic 50.0%
TTGATGGAGCTGCTCCGGTT+GGG - chr8_3:26529117-26529136 None:intergenic 55.0%
TGGGTCGGGGATGTTGTTGA+TGG - chr8_3:26529133-26529152 None:intergenic 55.0%
CGGGTCGTAATATTGGGTCG+GGG - chr8_3:26529146-26529165 None:intergenic 55.0%
GTAGCGAATGGAGGAAGCAG+CGG - chr8_3:26529215-26529234 None:intergenic 55.0%
ATCGGAGGAGTAGCGAATGG+AGG - chr8_3:26529224-26529243 None:intergenic 55.0%
AGGGGCAATGTCGAAATCGG+AGG - chr8_3:26529239-26529258 None:intergenic 55.0%
GATTTCGACATTGCCCCTCC+TGG + chr8_3:26529241-26529260 Msa1284340:CDS 55.0%
TCTAGACGCAACTCCAGGAG+GGG - chr8_3:26529257-26529276 None:intergenic 55.0%
! ATTTGTTGCAGCAGCGGCGA+CGG - chr8_3:26529329-26529348 None:intergenic 55.0%
! GGCGACATTTGTTGCAGCAG+CGG - chr8_3:26529335-26529354 None:intergenic 55.0%
CAGTTCAAATCCCGTCGGGA+CGG - chr8_3:26529726-26529745 None:intergenic 55.0%
GTCCCGACGGGATTTGAACT+GGG + chr8_3:26529725-26529744 Msa1284340:intron 55.0%
GAACTGGGAACCTTAGACGC+CGG + chr8_3:26529740-26529759 Msa1284340:intron 55.0%
GCTACGCCATTCCTAAGAGC+TGG + chr8_3:26530078-26530097 Msa1284340:intron 55.0%
TGGGCACAATCCTTCTCTCC+TGG - chr8_3:26531179-26531198 None:intergenic 55.0%
GAAACTCTTCCCGAGAGACC+TGG + chr8_3:26532650-26532669 Msa1284340:CDS 55.0%
!! TCTGGTTCTCCAGGTCTCTC+GGG - chr8_3:26532662-26532681 None:intergenic 55.0%
CAAAGGGCTTCCTGTGAGAC+CGG + chr8_3:26533345-26533364 Msa1284340:CDS 55.0%
GCCAGGCTTAGGCGATGTTT+AGG - chr8_3:26533435-26533454 None:intergenic 55.0%
!! CGCCTAAGCCTGGCTTTTCA+CGG + chr8_3:26533441-26533460 Msa1284340:intron 55.0%
GGGATGATTGTAGCGGCAAC+TGG - chr8_3:26533639-26533658 None:intergenic 55.0%
ACCCCACAAGAATGAGCAGC+AGG - chr8_3:26533964-26533983 None:intergenic 55.0%
CTGTTACTCCCACCTGAGAC+TGG - chr8_3:26534225-26534244 None:intergenic 55.0%
CAGTCTCAGGTGGGAGTAAC+AGG + chr8_3:26534223-26534242 Msa1284340:intron 55.0%
ACTATCTATCCTCAGCGCCC+TGG + chr8_3:26534247-26534266 Msa1284340:CDS 55.0%
TTGTGCGGTCGATTGGGTGA+TGG - chr8_3:26534765-26534784 None:intergenic 55.0%
!! TCACTTCTCCTGGTGGTGGA+TGG - chr8_3:26535290-26535309 None:intergenic 55.0%
TCCACCACCAGGAGAAGTGA+TGG + chr8_3:26535290-26535309 Msa1284340:CDS 55.0%
TCCATCACTTCTCCTGGTGG+TGG - chr8_3:26535294-26535313 None:intergenic 55.0%
GCCATCTCCATCACTTCTCC+TGG - chr8_3:26535300-26535319 None:intergenic 55.0%
GGAGCTTCTACGACCAATGG+AGG + chr8_3:26535330-26535349 Msa1284340:CDS 55.0%
GGTCTCCGTTTCTCCTCCAT+TGG - chr8_3:26535346-26535365 None:intergenic 55.0%
! GTTGATGGAGCTGCTCCGGT+TGG - chr8_3:26529118-26529137 None:intergenic 60.0%
!! GAGGGGAAAGCATTCGCCCA+AGG - chr8_3:26529295-26529314 None:intergenic 60.0%
CGTCCCGACGGGATTTGAAC+TGG + chr8_3:26529724-26529743 Msa1284340:intron 60.0%
TCCTCAGAGGCCAGGAGAGA+AGG + chr8_3:26531166-26531185 Msa1284340:CDS 60.0%
TCCTTCTCTCCTGGCCTCTG+AGG - chr8_3:26531170-26531189 None:intergenic 60.0%
CCACCCGCAGGAACCCAAAT+AGG - chr8_3:26531254-26531273 None:intergenic 60.0%
! CCTATTTGGGTTCCTGCGGG+TGG + chr8_3:26531251-26531270 Msa1284340:CDS 60.0%
! CAATCTGGGATTCCACCCGC+AGG - chr8_3:26531266-26531285 None:intergenic 60.0%
CTGCGGGTGGAATCCCAGAT+TGG + chr8_3:26531264-26531283 Msa1284340:CDS 60.0%
TGGCTTACCTGAGAGGCCAC+AGG + chr8_3:26532869-26532888 Msa1284340:CDS 60.0%
GAAGGGCCCAATGCAGACAC+AGG - chr8_3:26533768-26533787 None:intergenic 60.0%
!! TCAATCTGTCCAGGGCGCTG+AGG - chr8_3:26534259-26534278 None:intergenic 60.0%
AATGGAGGAAGCAGCGGCGG+CGG - chr8_3:26529209-26529228 None:intergenic 65.0%
GCGAATGGAGGAAGCAGCGG+CGG - chr8_3:26529212-26529231 None:intergenic 65.0%
GGGCCCAATGCAGACACAGG+TGG - chr8_3:26533765-26533784 None:intergenic 65.0%
CGGTGCGGCGATAGTGAGCG+AGG - chr8_3:26529180-26529199 None:intergenic 70.0%
TGTTGCAGCAGCGGCGACGG+CGG - chr8_3:26529326-26529345 None:intergenic 70.0%
GGAAGCAGCGGCGGCGGCTT+CGG - chr8_3:26529203-26529222 None:intergenic 75.0%
GGGGGCTCCTGTGGCCTCTC+AGG - chr8_3:26532879-26532898 None:intergenic 75.0%
GCCACAGGAGCCCCCTTGCG+CGG + chr8_3:26532884-26532903 Msa1284340:CDS 75.0%
ACCGCGCAAGGGGGCTCCTG+TGG - chr8_3:26532888-26532907 None:intergenic 75.0%
! AGCAGCGGCGGCGGCTTCGG+CGG - chr8_3:26529200-26529219 None:intergenic 80.0%
! AGCAGCGGCGACGGCGGCAG+CGG - chr8_3:26529320-26529339 None:intergenic 80.0%
! CGGCGGCGGCTTCGGCGGTG+CGG - chr8_3:26529195-26529214 None:intergenic 85.0%
! CGACGGCGGCAGCGGCGGAG+GGG - chr8_3:26529312-26529331 None:intergenic 85.0%
! GCGACGGCGGCAGCGGCGGA+GGG - chr8_3:26529313-26529332 None:intergenic 85.0%
! AGCGGCGACGGCGGCAGCGG+CGG - chr8_3:26529317-26529336 None:intergenic 85.0%
! GGCGACGGCGGCAGCGGCGG+AGG - chr8_3:26529314-26529333 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 26528835 26535673 26528835 ID=Msa1284340;Name=Msa1284340
chr8_3 mRNA 26528835 26535673 26528835 ID=Msa1284340-mRNA-1;Parent=Msa1284340;Name=Msa1284340-mRNA-1;_AED=0.03;_eAED=0.03;_QI=241|1|1|1|1|1|11|269|515
chr8_3 exon 26528835 26529391 26528835 ID=Msa1284340-mRNA-1:exon:9188;Parent=Msa1284340-mRNA-1
chr8_3 exon 26531054 26531292 26531054 ID=Msa1284340-mRNA-1:exon:9189;Parent=Msa1284340-mRNA-1
chr8_3 exon 26532629 26532688 26532629 ID=Msa1284340-mRNA-1:exon:9190;Parent=Msa1284340-mRNA-1
chr8_3 exon 26532783 26532905 26532783 ID=Msa1284340-mRNA-1:exon:9191;Parent=Msa1284340-mRNA-1
chr8_3 exon 26533151 26533366 26533151 ID=Msa1284340-mRNA-1:exon:9192;Parent=Msa1284340-mRNA-1
chr8_3 exon 26533483 26533520 26533483 ID=Msa1284340-mRNA-1:exon:9193;Parent=Msa1284340-mRNA-1
chr8_3 exon 26533622 26533668 26533622 ID=Msa1284340-mRNA-1:exon:9194;Parent=Msa1284340-mRNA-1
chr8_3 exon 26533754 26533884 26533754 ID=Msa1284340-mRNA-1:exon:9195;Parent=Msa1284340-mRNA-1
chr8_3 exon 26534226 26534285 26534226 ID=Msa1284340-mRNA-1:exon:9196;Parent=Msa1284340-mRNA-1
chr8_3 exon 26534715 26534846 26534715 ID=Msa1284340-mRNA-1:exon:9197;Parent=Msa1284340-mRNA-1
chr8_3 exon 26535219 26535673 26535219 ID=Msa1284340-mRNA-1:exon:9198;Parent=Msa1284340-mRNA-1
chr8_3 five_prime_UTR 26528835 26529075 26528835 ID=Msa1284340-mRNA-1:five_prime_utr;Parent=Msa1284340-mRNA-1
chr8_3 CDS 26529076 26529391 26529076 ID=Msa1284340-mRNA-1:cds;Parent=Msa1284340-mRNA-1
chr8_3 CDS 26531054 26531292 26531054 ID=Msa1284340-mRNA-1:cds;Parent=Msa1284340-mRNA-1
chr8_3 CDS 26532629 26532688 26532629 ID=Msa1284340-mRNA-1:cds;Parent=Msa1284340-mRNA-1
chr8_3 CDS 26532783 26532905 26532783 ID=Msa1284340-mRNA-1:cds;Parent=Msa1284340-mRNA-1
chr8_3 CDS 26533151 26533366 26533151 ID=Msa1284340-mRNA-1:cds;Parent=Msa1284340-mRNA-1
chr8_3 CDS 26533483 26533520 26533483 ID=Msa1284340-mRNA-1:cds;Parent=Msa1284340-mRNA-1
chr8_3 CDS 26533622 26533668 26533622 ID=Msa1284340-mRNA-1:cds;Parent=Msa1284340-mRNA-1
chr8_3 CDS 26533754 26533884 26533754 ID=Msa1284340-mRNA-1:cds;Parent=Msa1284340-mRNA-1
chr8_3 CDS 26534226 26534285 26534226 ID=Msa1284340-mRNA-1:cds;Parent=Msa1284340-mRNA-1
chr8_3 CDS 26534715 26534846 26534715 ID=Msa1284340-mRNA-1:cds;Parent=Msa1284340-mRNA-1
chr8_3 CDS 26535219 26535404 26535219 ID=Msa1284340-mRNA-1:cds;Parent=Msa1284340-mRNA-1
chr8_3 three_prime_UTR 26535405 26535673 26535405 ID=Msa1284340-mRNA-1:three_prime_utr;Parent=Msa1284340-mRNA-1
Gene Sequence

>Msa1284340

ATGGAAAACCGAATCTACAACACATCCTCTTACAACATCCCAACCGGAGCAGCTCCATCAACAACATCCCCGACCCAATATTACGACCCGAATACAATGTTCCTCGCTCACTATCGCCGCACCGCCGAAGCCGCCGCCGCTGCTTCCTCCATTCGCTACTCCTCCGATTTCGACATTGCCCCTCCTGGAGTTGCGTCTAGAATCTCCACCACTAATCCTTGGGCGAATGCTTTCCCCTCCGCCGCTGCCGCCGTCGCCGCTGCTGCAACAAATGTCGCCTCTGCCGCTTCACTTGATCTTAAACGCTCTTCTGATGCGCTCTACCATCCATCCATTTTGAGTACAATTGGGCAAAACGAAGCTTGGTATACGTCGAACTCACTGGCCAAGCGCCCTAGATATGAAACCGGAAGTACTTTGCCTATTTATCCTCAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTAACAAGAACCTGTAAATTTGGAGAGAGCTGCAAGTTCGATCATCCTATTTGGGTTCCTGCGGGTGGAATCCCAGATTGGAAAGAGGTTCCAAATATTGTTCCAAGTGAAACTCTTCCCGAGAGACCTGGAGAACCAGATTGTCCATTCTTTCTGAAAACTCAAAAATGCAAGTTTGGTACAAAGTGCAAATTTAATCATCCAAATGTTCCCTCTGAAAATGCCGATGTTTCTGGCTTACCTGAGAGGCCACAGGAGCCCCCTTGCGCGTTCTACTTGAAAACTGGAAAATGTAAATACGGTGCTGCATGCAAATTCCATCACCCCAAGGATATCCAAATTCAACTATCTGATGATTTGAGTCGTAATGTTGAGCAGACACAAACAAATTCTTCTGTGTTTGATGGGGCAATAGGAGATACACAGTCAACTATGCCTCTTATATCTCCACTGTCGCATAATAGCAAAGGGCTTCCTGTGAGACCGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGAAGTTGCAAGTTCGGTGCCAGTTGCCGCTACAATCATCCCGACATGAGTGCCATTAATCCACCTGTGTCTGCATTGGGCCCTTCTGTTTTGGCGTCCTCAACTGCTAATCTTAACATTGGAGCTATTAATCCAGCTGCTTCTTTTTATCAAGCTTTTGACCCCAGTCTGTCAAATCCAATGTCTCAGGTGGGAGTAACAGGGACTATCTATCCTCAGCGCCCTGGACAGATTGAATGTGATTTCTATATGAAATCTGGCATATGTAAATTTGGGGAAAGATGCAAGTACCATCACCCAATCGACCGCACAACATCACTGTCAAAACTGCCATCAAATGTTAAACTTACTGCTGCAGGGTTACCAAGAAGAGAGGGTGTCGAGATCTGCCCATATTATTTGAAAACTGCAACGTGCAAGTTTGGTGCAACATGCAAATTTGACCATCCACCACCAGGAGAAGTGATGGAGATGGCTAAGTCACAAGGAGCTTCTACGACCAATGGAGGAGAAACGGAGACCAACGAAAATGTGCCTGGTTCTGCTCCGGAACAATATTGA
Protein sequence

>Msa1284340

MENRIYNTSSYNIPTGAAPSTTSPTQYYDPNTMFLAHYRRTAEAAAAASSIRYSSDFDIAPPGVASRISTTNPWANAFPSAAAAVAAAATNVASAASLDLKRSSDALYHPSILSTIGQNEAWYTSNSLAKRPRYETGSTLPIYPQRPGEKDCAHYMLTRTCKFGESCKFDHPIWVPAGGIPDWKEVPNIVPSETLPERPGEPDCPFFLKTQKCKFGTKCKFNHPNVPSENADVSGLPERPQEPPCAFYLKTGKCKYGAACKFHHPKDIQIQLSDDLSRNVEQTQTNSSVFDGAIGDTQSTMPLISPLSHNSKGLPVRPGEVDCPFYMKTGSCKFGASCRYNHPDMSAINPPVSALGPSVLASSTANLNIGAINPAASFYQAFDPSLSNPMSQVGVTGTIYPQRPGQIECDFYMKSGICKFGERCKYHHPIDRTTSLSKLPSNVKLTAAGLPRREGVEICPYYLKTATCKFGATCKFDHPPPGEVMEMAKSQGASTTNGGETETNENVPGSAPEQY*