AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1325860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1325860 MtrunA17_Chr8g0360501 99.708 343 1 0 1 343 1 343 0.0 688
Msa1325860 MtrunA17_Chr5g0400691 66.026 312 105 1 29 340 45 355 5.64e-147 419
Msa1325860 MtrunA17_Chr4g0060781 61.250 320 121 2 26 343 85 403 2.17e-139 401
Msa1325860 MtrunA17_Chr4g0049321 64.103 312 111 1 29 340 43 353 4.36e-139 398
Msa1325860 MtrunA17_Chr8g0381211 52.113 71 31 2 256 326 419 486 5.03e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1325860 AT3G15020.1 83.090 343 56 2 1 343 1 341 0.0 581
Msa1325860 AT1G53240.1 82.216 343 59 2 1 343 1 341 0.0 578
Msa1325860 AT3G15020.2 83.168 303 49 2 1 303 1 301 0.0 514
Msa1325860 AT2G22780.1 64.762 315 110 1 29 343 41 354 6.24e-145 414
Msa1325860 AT3G47520.1 59.104 335 132 3 8 338 58 391 3.55e-137 395
Msa1325860 AT5G09660.2 64.744 312 109 1 29 340 20 330 1.23e-132 382
Msa1325860 AT5G09660.1 64.744 312 109 1 29 340 41 351 2.64e-132 381
Msa1325860 AT5G09660.5 64.744 312 108 2 29 340 41 350 1.45e-130 377
Msa1325860 AT5G09660.3 66.541 266 89 0 29 294 20 285 8.49e-112 329
Msa1325860 AT5G09660.4 66.541 266 89 0 29 294 41 306 1.06e-111 329

Find 164 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTACAAGCATCAACTATTT+TGG 0.053862 8_4:+38652536 None:intergenic
ACGAGTCATTCCAGGCTTTC+TGG 0.199155 8_4:+38650981 None:intergenic
TTAATATACTATGCAATTAT+AGG 0.215563 8_4:-38648347 Msa1325860:three_prime_UTR
AATCTCTACTCGCAATAAAT+TGG 0.237446 8_4:-38652500 Msa1325860:five_prime_UTR
AGATTTAAACCAAAATAAAA+TGG 0.242666 8_4:+38648257 None:intergenic
AAATTTGATTCGGTTCTAAA+TGG 0.244498 8_4:+38648564 None:intergenic
ATACATTTCTGGCAGGTTAC+TGG 0.259383 8_4:-38648593 Msa1325860:three_prime_UTR
GCTTGCCTCAAAGGTCTTAA+TGG 0.290402 8_4:-38649037 Msa1325860:CDS
AAAGTGGTTATAAAATTATT+AGG 0.296327 8_4:-38648231 Msa1325860:three_prime_UTR
GAATGGTGTAGAGGAAATTC+TGG 0.304636 8_4:-38648728 Msa1325860:CDS
AATATAAATGAGAAATAAAA+AGG 0.311538 8_4:+38648304 None:intergenic
TCGAACATGTCATACATTTC+TGG 0.317383 8_4:-38648604 Msa1325860:three_prime_UTR
TTACAACTCTTGATGTAGTT+AGG 0.320658 8_4:-38649843 Msa1325860:CDS
CAACCTCTGTTCCTCCATCT+TGG 0.327215 8_4:+38649287 None:intergenic
GAGGCAAGCATCAGCAAATA+TGG 0.328154 8_4:+38649051 None:intergenic
TAATATACTATGCAATTATA+GGG 0.332533 8_4:-38648346 Msa1325860:three_prime_UTR
TACGACGAGAAGAGATTGTT+TGG 0.338064 8_4:-38649868 Msa1325860:CDS
TCTGGATGATGATGTCATTA+AGG 0.345680 8_4:-38649326 Msa1325860:CDS
TGTATGACATGTTCGATTAC+TGG 0.355821 8_4:+38648611 None:intergenic
CTTTCTCTTTATGATATTGC+TGG 0.358856 8_4:-38652209 Msa1325860:CDS
TGTAAAGAATTGTATAAGAT+AGG 0.364309 8_4:+38648101 None:intergenic
GGCTTTCTGGGCACGCCGGC+AGG 0.365332 8_4:+38650994 None:intergenic
CAGATTTAATTATTAAATCT+AGG 0.369909 8_4:+38648464 None:intergenic
GAACGCAAGGTGGCCATTCT+CGG 0.375746 8_4:-38652296 Msa1325860:CDS
GGCATCACCTCAAGCCAATC+TGG 0.378443 8_4:-38649344 Msa1325860:CDS
GCCACCTTGCGTTCAGGAAC+CGG 0.381271 8_4:+38652305 None:intergenic
CATGTTTCTTGCAGTTATGC+TGG 0.385172 8_4:-38649076 Msa1325860:intron
TCTCCCTCTCTCTCTATTCT+CGG 0.385732 8_4:-38652425 Msa1325860:five_prime_UTR
AACCTCTGTTCCTCCATCTT+GGG 0.392469 8_4:+38649288 None:intergenic
ACAATTGTTTGTAATGTTGC+CGG 0.399363 8_4:-38648529 Msa1325860:three_prime_UTR
AAAGCTAATGTTCCAGTTGC+GGG 0.399522 8_4:-38649799 Msa1325860:intron
TTGAAAACTTCAGCAGCAAT+GGG 0.400733 8_4:+38649904 None:intergenic
ACACTTTACATACCCGCAAC+TGG 0.402277 8_4:+38649787 None:intergenic
TGCGGAACCCTTTCCAGCCT+TGG 0.405924 8_4:+38649258 None:intergenic
AGGAAGTTCAGCAATGAGAT+TGG 0.408221 8_4:+38648979 None:intergenic
CAAGAACAGTTTATTGCTGC+AGG 0.409718 8_4:-38648441 Msa1325860:three_prime_UTR
CTCGGTGCCGCCGGTGGGAT+CGG 0.412931 8_4:-38652278 Msa1325860:CDS
TGGAAAGGCCAATCTAAAAC+TGG 0.414268 8_4:+38648405 None:intergenic
CCTGCATGGCCTCCTATAAC+AGG 0.414819 8_4:+38649498 None:intergenic
AGATGAGCTTGGAAAAGCTT+TGG 0.416154 8_4:-38651040 Msa1325860:CDS
TGAATTTGCAAAATTTGATT+CGG 0.416301 8_4:+38648554 None:intergenic
ACGACGAGAAGAGATTGTTT+GGG 0.422259 8_4:-38649867 Msa1325860:CDS
GCCGGCGTGCCCAGAAAGCC+TGG 0.425749 8_4:-38650991 Msa1325860:CDS
GCGGGACACGGCTGACTTGA+CGG 0.426923 8_4:+38652358 None:intergenic
CGAGTCATTCCAGGCTTTCT+GGG 0.427884 8_4:+38650982 None:intergenic
CTTTCCATTTCCATTCGTAA+TGG 0.428077 8_4:-38648389 Msa1325860:three_prime_UTR
TACGAGCACTCAACAACATC+TGG 0.433263 8_4:+38649010 None:intergenic
CAGCAATATCATAAAGAGAA+AGG 0.433801 8_4:+38652210 None:intergenic
TATGATATTGCTGGTACCCC+TGG 0.437304 8_4:-38652200 Msa1325860:CDS
GCCATTCTCGGTGCCGCCGG+TGG 0.439694 8_4:-38652284 Msa1325860:CDS
GAGGTCAATGTACCTGTTAT+AGG 0.443809 8_4:-38649510 Msa1325860:CDS
AGAATGGCCACCTTGCGTTC+AGG 0.443817 8_4:+38652299 None:intergenic
AATGGCCCTTCACTAATGTA+TGG 0.446444 8_4:-38648371 Msa1325860:three_prime_UTR
CAGGTGAGGATTGGGAAGAA+TGG 0.448697 8_4:-38648745 Msa1325860:CDS
TTGGTTTAAATCTTGAAAAG+TGG 0.451557 8_4:-38648247 Msa1325860:three_prime_UTR
CTTGAAAACTTCAGCAGCAA+TGG 0.452479 8_4:+38649903 None:intergenic
AGGGCCATTACGAATGGAAA+TGG 0.453882 8_4:+38648385 None:intergenic
AGATCATCACGAGTCATTCC+AGG 0.455102 8_4:+38650973 None:intergenic
ACTTCCTTTCTTTGCTTCCA+AGG 0.457724 8_4:-38648963 Msa1325860:intron
GTAAAGAATTGTATAAGATA+GGG 0.459200 8_4:+38648102 None:intergenic
GTTATAAAATTATTAGGCTC+AGG 0.462923 8_4:-38648225 Msa1325860:three_prime_UTR
TGAAAAGGGTACCTGAGATC+TGG 0.463834 8_4:+38652148 None:intergenic
TTTGCTGATGCTTGCCTCAA+AGG 0.464611 8_4:-38649046 Msa1325860:CDS
CCCACCGGCGGCACCGAGAA+TGG 0.465990 8_4:+38652283 None:intergenic
AGCAATATCATAAAGAGAAA+GGG 0.469702 8_4:+38652211 None:intergenic
AATAGAGAGAGAGGGAGAGA+GGG 0.470931 8_4:+38652430 None:intergenic
TACAACTCTTGATGTAGTTA+GGG 0.471552 8_4:-38649842 Msa1325860:CDS
CTTGCGTTCAGGAACCGGTT+CGG 0.485970 8_4:+38652310 None:intergenic
GTGGCCATTCTCGGTGCCGC+CGG 0.486479 8_4:-38652287 Msa1325860:CDS
AATGACATCATCATCCAGAT+TGG 0.486665 8_4:+38649330 None:intergenic
AACAAAGCCACCACCTCTGC+CGG 0.490459 8_4:+38648510 None:intergenic
CTAACATCGGCAGCAACACC+AGG 0.490641 8_4:+38652182 None:intergenic
GGGTTCCGCAACTTTGTCAA+TGG 0.490990 8_4:-38649245 Msa1325860:CDS
GGAATTACCTGAGAAAATAG+TGG 0.493703 8_4:+38649462 None:intergenic
GAACTCCATTAAGACCTTTG+AGG 0.494787 8_4:+38649032 None:intergenic
GAGGTTGTGACTGCCAAGGC+TGG 0.496598 8_4:-38649271 Msa1325860:CDS
GTAGAGGAAATTCTGGGCCT+AGG 0.496739 8_4:-38648721 Msa1325860:CDS
GCGGGTTATGCTGCGGGACA+CGG 0.500052 8_4:+38652346 None:intergenic
CCATTCTCGGTGCCGCCGGT+GGG 0.500262 8_4:-38652283 Msa1325860:CDS
CCGTGGCTATGCCACCGAAC+CGG 0.500819 8_4:-38652324 Msa1325860:CDS
GTATGACATGTTCGATTACT+GGG 0.508568 8_4:+38648612 None:intergenic
AAAATTATTAGGCTCAGGCT+AGG 0.511423 8_4:-38648220 Msa1325860:three_prime_UTR
ATGGGGACAGTTGAGTTCAC+AGG 0.511862 8_4:+38649922 None:intergenic
TGTGACTGCCAAGGCTGGAA+AGG 0.512626 8_4:-38649266 Msa1325860:CDS
GTTTGTAATGTTGCCGGCAG+AGG 0.518493 8_4:-38648523 Msa1325860:three_prime_UTR
CCTGTTATAGGAGGCCATGC+AGG 0.522625 8_4:-38649498 Msa1325860:CDS
GACGTTGTTATAATTCCTGC+CGG 0.524460 8_4:-38651009 Msa1325860:CDS
TGAGCTTGGAAAAGCTTTGG+AGG 0.525617 8_4:-38651037 Msa1325860:CDS
CCACATCAACTCCAGATCTC+AGG 0.529181 8_4:-38652159 Msa1325860:intron
TCCAGGCTTTCTGGGCACGC+CGG 0.530779 8_4:+38650990 None:intergenic
GAATAGAGAGAGAGGGAGAG+AGG 0.534057 8_4:+38652429 None:intergenic
TTCGGTGGCATAGCCACGGC+GGG 0.536741 8_4:+38652328 None:intergenic
AATGAATGAACGCTTATGCT+TGG 0.538699 8_4:+38652462 None:intergenic
ACATGTCATACATTTCTGGC+AGG 0.543317 8_4:-38648600 Msa1325860:three_prime_UTR
GAGAAAGGGTTGAAACGAGA+GGG 0.543785 8_4:+38652225 None:intergenic
TAAAGAATTGTATAAGATAG+GGG 0.543912 8_4:+38648103 None:intergenic
GCCACGGCGGGTTATGCTGC+GGG 0.544063 8_4:+38652340 None:intergenic
ATCACCTTGGAAGCAAAGAA+AGG 0.544474 8_4:+38648959 None:intergenic
AATGTTGCCGGCAGAGGTGG+TGG 0.545920 8_4:-38648517 Msa1325860:three_prime_UTR
AGCCACGGCGGGTTATGCTG+CGG 0.546095 8_4:+38652339 None:intergenic
AATGGTGTAGAGGAAATTCT+GGG 0.547032 8_4:-38648727 Msa1325860:CDS
TGTGGACATATGTGAACTGT+TGG 0.547069 8_4:-38648159 Msa1325860:three_prime_UTR
CTTAAGTCATCTATTGAGAA+GGG 0.549740 8_4:-38648649 Msa1325860:CDS
ATGACTTAAGTTCAGACTTG+AGG 0.553442 8_4:+38648662 None:intergenic
GTGACTGCCAAGGCTGGAAA+GGG 0.554401 8_4:-38649265 Msa1325860:CDS
GAGTATCGACGGCCTCATCA+TGG 0.558205 8_4:+38652385 None:intergenic
TAGTGAAGGGCCATTACGAA+TGG 0.565775 8_4:+38648379 None:intergenic
ATTAAACCATACATTAGTGA+AGG 0.571302 8_4:+38648365 None:intergenic
CTAACTGCGAGGACCCAAGA+TGG 0.573904 8_4:-38649301 Msa1325860:CDS
ACTTAAGTCATCTATTGAGA+AGG 0.574569 8_4:-38648650 Msa1325860:CDS
AAATTATTAGGCTCAGGCTA+GGG 0.575193 8_4:-38648219 Msa1325860:three_prime_UTR
TACGCAGGTGAAGATGAGCT+TGG 0.576220 8_4:-38651051 Msa1325860:CDS
CGACGAGAAGAGATTGTTTG+GGG 0.576854 8_4:-38649866 Msa1325860:CDS
TGTAATGTTGCCGGCAGAGG+TGG 0.579567 8_4:-38648520 Msa1325860:three_prime_UTR
GAGCTTCATGAGAAGAGAGA+GGG 0.580913 8_4:+38652250 None:intergenic
CTCAGGCTAGGGTGGATGAG+TGG 0.582680 8_4:-38648208 Msa1325860:three_prime_UTR
AGAGAAAGGGTTGAAACGAG+AGG 0.583003 8_4:+38652224 None:intergenic
TTATTAGGCTCAGGCTAGGG+TGG 0.584243 8_4:-38648216 Msa1325860:three_prime_UTR
GAAAGCTAATGTTCCAGTTG+CGG 0.585095 8_4:-38649800 Msa1325860:CDS
CCTGAGATCTGGAGTTGATG+TGG 0.592045 8_4:+38652159 None:intergenic
GTTGATGCTTGTAAGATGCT+CGG 0.592158 8_4:-38652528 Msa1325860:five_prime_UTR
TCTTCCGAGAATAGAGAGAG+AGG 0.594398 8_4:+38652421 None:intergenic
TTAAACCATACATTAGTGAA+GGG 0.594915 8_4:+38648366 None:intergenic
CCGGTTCGGTGGCATAGCCA+CGG 0.595900 8_4:+38652324 None:intergenic
GCGTTCAGGAACCGGTTCGG+TGG 0.596037 8_4:+38652313 None:intergenic
GTCCACGTGGATGAGTTATG+TGG 0.599348 8_4:-38648177 Msa1325860:three_prime_UTR
GAGGGGCTGACCGATCCCAC+CGG 0.599708 8_4:+38652268 None:intergenic
AAGAACAGTTTATTGCTGCA+GGG 0.600875 8_4:-38648440 Msa1325860:three_prime_UTR
TTCTCGAAGCATCCATGATG+AGG 0.602920 8_4:-38652397 Msa1325860:exon
AGCTTCATGAGAAGAGAGAG+GGG 0.608885 8_4:+38652251 None:intergenic
GAATTACCTGAGAAAATAGT+GGG 0.610521 8_4:+38649463 None:intergenic
GAGCTTGGAAAAGCTTTGGA+GGG 0.610948 8_4:-38651036 Msa1325860:CDS
GATTGGGAAGAATGGTGTAG+AGG 0.619575 8_4:-38648737 Msa1325860:CDS
GTCAATGTACCTGTTATAGG+AGG 0.620105 8_4:-38649507 Msa1325860:CDS
GGAGTTGATGTGGCTAACAT+CGG 0.621832 8_4:+38652169 None:intergenic
GGAGAATAGTAACTCCTGCA+TGG 0.631392 8_4:+38649484 None:intergenic
CTTCCGAGAATAGAGAGAGA+GGG 0.632882 8_4:+38652422 None:intergenic
TGAGCTTCATGAGAAGAGAG+AGG 0.635248 8_4:+38652249 None:intergenic
ATGCAGGTAACTGGGTACGC+AGG 0.635967 8_4:-38651066 Msa1325860:intron
TGGGGACAGTTGAGTTCACA+GGG 0.637936 8_4:+38649923 None:intergenic
CATTACGAATGGAAATGGAA+AGG 0.639112 8_4:+38648390 None:intergenic
TTACGCCATTGACAAAGTTG+CGG 0.643353 8_4:+38649240 None:intergenic
CGAACCGGTTCCTGAACGCA+AGG 0.644125 8_4:-38652309 Msa1325860:CDS
TTATGCTTGGAGAGTGACGA+TGG 0.644637 8_4:+38652475 None:intergenic
TCCCGCAGCATAACCCGCCG+TGG 0.650564 8_4:-38652341 Msa1325860:CDS
TTGACGGATCTGAGTATCGA+CGG 0.652201 8_4:+38652374 None:intergenic
GGATGTGCATCATAAATCAG+TGG 0.654082 8_4:+38648124 None:intergenic
AGGCTAGGGTGGATGAGTGG+AGG 0.654720 8_4:-38648205 Msa1325860:three_prime_UTR
CAAAATCTGAGAGAGAACCT+AGG 0.656711 8_4:+38648704 None:intergenic
AACAGAGGTTGTGACTGCCA+AGG 0.658548 8_4:-38649275 Msa1325860:CDS
GACCCAAGATGGAGGAACAG+AGG 0.666823 8_4:-38649290 Msa1325860:CDS
TCATCATCCAGATTGGCTTG+AGG 0.669069 8_4:+38649337 None:intergenic
ACCGGTTCCTGAACGCAAGG+TGG 0.673690 8_4:-38652306 Msa1325860:CDS
TAACATCGGCAGCAACACCA+GGG 0.676039 8_4:+38652183 None:intergenic
GTTCGGTGGCATAGCCACGG+CGG 0.681583 8_4:+38652327 None:intergenic
ACTGCGAGGACCCAAGATGG+AGG 0.683500 8_4:-38649298 Msa1325860:CDS
GGGCTGACCGATCCCACCGG+CGG 0.696199 8_4:+38652271 None:intergenic
GCAGTACTTAGAAATAGCAG+TGG 0.701234 8_4:+38650915 None:intergenic
AGTGGAGGAAGTCGTCCACG+TGG 0.710170 8_4:-38648190 Msa1325860:three_prime_UTR
TCATTAAGGCTCTAACTGCG+AGG 0.713351 8_4:-38649312 Msa1325860:CDS
TGAAAACTTCAGCAGCAATG+GGG 0.713692 8_4:+38649905 None:intergenic
AACATCGGCAGCAACACCAG+GGG 0.724695 8_4:+38652184 None:intergenic
TGACATGTTCGATTACTGGG+AGG 0.743122 8_4:+38648615 None:intergenic
GTCCACATAACTCATCCACG+TGG 0.769200 8_4:+38648175 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTAAACAATTTTTTTTAA+GGG + chr8_4:38649036-38649055 None:intergenic 10.0%
!!! AATCTAAACAATTTTTTTTA+AGG + chr8_4:38649037-38649056 None:intergenic 10.0%
!!! AATCTAAACAATTTTTTTAT+AGG - chr8_4:38649195-38649214 Msa1325860:intron 10.0%
!!! ATCTAAACAATTTTTTTATA+GGG - chr8_4:38649196-38649215 Msa1325860:intron 10.0%
!! AATATAAATGAGAAATAAAA+AGG + chr8_4:38652398-38652417 None:intergenic 10.0%
!!! TTTGTTGTATTTTAATGTTA+TGG - chr8_4:38648949-38648968 Msa1325860:intron 15.0%
!!! TCTAAACAATTTTTTTTAAG+GGG + chr8_4:38649035-38649054 None:intergenic 15.0%
!! TTTGTAATTTGAAAGAATTT+CGG - chr8_4:38649133-38649152 Msa1325860:intron 15.0%
!!! TCTAAACAATTTTTTTATAG+GGG - chr8_4:38649197-38649216 Msa1325860:intron 15.0%
!! GCATGATTTATTTATTATTA+TGG - chr8_4:38649397-38649416 Msa1325860:intron 15.0%
!! AAACTAAACTAAAAAAATCA+CGG + chr8_4:38649556-38649575 None:intergenic 15.0%
!! TAAAAAAAACACAAAACTAT+TGG - chr8_4:38650052-38650071 Msa1325860:intron 15.0%
!! AAAAAAAAACACAAAACTAA+CGG + chr8_4:38650183-38650202 None:intergenic 15.0%
!! CAGATTTAATTATTAAATCT+AGG + chr8_4:38652238-38652257 None:intergenic 15.0%
!! TTAATATACTATGCAATTAT+AGG - chr8_4:38652352-38652371 Msa1325860:CDS 15.0%
!! TAATATACTATGCAATTATA+GGG - chr8_4:38652353-38652372 Msa1325860:CDS 15.0%
!! AGATTTAAACCAAAATAAAA+TGG + chr8_4:38652445-38652464 None:intergenic 15.0%
!! AAAGTGGTTATAAAATTATT+AGG - chr8_4:38652468-38652487 Msa1325860:five_prime_UTR 15.0%
!! TTGATGAATCTTAATTTCAA+AGG - chr8_4:38648609-38648628 Msa1325860:exon 20.0%
!! TTCAATGTAATCATATATGT+TGG + chr8_4:38648821-38648840 None:intergenic 20.0%
!! ATGTTATGGTAATTAACATT+TGG - chr8_4:38648963-38648982 Msa1325860:intron 20.0%
!! TGTTATGGTAATTAACATTT+GGG - chr8_4:38648964-38648983 Msa1325860:CDS 20.0%
!!! ATTTAAAGATTCTTTGGTTT+TGG - chr8_4:38649067-38649086 Msa1325860:intron 20.0%
!! GAAATTCTTTCAAATTACAA+AGG + chr8_4:38649134-38649153 None:intergenic 20.0%
!!! TTTTTTTTCCTTTCCAATTT+TGG - chr8_4:38649604-38649623 Msa1325860:intron 20.0%
!!! ATTTAAAACCAAAATTGGAA+AGG + chr8_4:38649615-38649634 None:intergenic 20.0%
!! CTTTGTAAAAATATTGGTAT+TGG - chr8_4:38650009-38650028 Msa1325860:intron 20.0%
!! TTTAACAGAAAATTAACAGA+GGG + chr8_4:38650036-38650055 None:intergenic 20.0%
!!! TTTTAACAGAAAATTAACAG+AGG + chr8_4:38650037-38650056 None:intergenic 20.0%
!! CTTTGTAAAAATATTGGTAT+TGG - chr8_4:38650009-38650028 Msa1325860:intron 20.0%
!! CTTTGTAAAAATATTGGTAT+TGG - chr8_4:38650009-38650028 Msa1325860:intron 20.0%
!! CTTTGTAAAAATATTGGTAT+TGG + chr8_4:38650009-38650028 None:intergenic 20.0%
!!! TAGTACACATGTTTAAAATT+TGG + chr8_4:38650336-38650355 None:intergenic 20.0%
!! CACTCAATTATTAGTATTAT+TGG + chr8_4:38650515-38650534 None:intergenic 20.0%
!! CAATAATACTAATAATTGAG+TGG - chr8_4:38650513-38650532 Msa1325860:intron 20.0%
!! ATATCATGCTTAAATATAGA+AGG + chr8_4:38650656-38650675 None:intergenic 20.0%
!! TTCTATATTTAAGCATGATA+TGG - chr8_4:38650655-38650674 Msa1325860:intron 20.0%
!!! GTTTCTATTTTTACTTCTAA+TGG - chr8_4:38651792-38651811 Msa1325860:intron 20.0%
!!! TTTTTACTTCTAATGGTTTA+AGG - chr8_4:38651799-38651818 Msa1325860:intron 20.0%
!! ACAACAAGTTAAAAGAAAAT+AGG + chr8_4:38651857-38651876 None:intergenic 20.0%
!! ATACAAAAGAATAAAACAAC+TGG + chr8_4:38651910-38651929 None:intergenic 20.0%
!! TGAATTTGCAAAATTTGATT+CGG + chr8_4:38652148-38652167 None:intergenic 20.0%
!!! AAATTAAACCAGTTTTAGAT+TGG - chr8_4:38652286-38652305 Msa1325860:CDS 20.0%
!! TAAAGAATTGTATAAGATAG+GGG + chr8_4:38652599-38652618 None:intergenic 20.0%
!! GTAAAGAATTGTATAAGATA+GGG + chr8_4:38652600-38652619 None:intergenic 20.0%
! ACACAAAAAGAGGAAAATTT+GGG + chr8_4:38648139-38648158 None:intergenic 25.0%
!! TTACAAGCATCAACTATTTT+GGG + chr8_4:38648165-38648184 None:intergenic 25.0%
! AGCAATATCATAAAGAGAAA+GGG + chr8_4:38648491-38648510 None:intergenic 25.0%
! TTACAATTAAGCAGTGAAAA+GGG + chr8_4:38648568-38648587 None:intergenic 25.0%
! TTTACAATTAAGCAGTGAAA+AGG + chr8_4:38648569-38648588 None:intergenic 25.0%
! TAATAAAAATACGCATGAGA+TGG + chr8_4:38648722-38648741 None:intergenic 25.0%
!! TGATTTTCTTAAATGATCAG+CGG - chr8_4:38648846-38648865 Msa1325860:intron 25.0%
! AAACTTATGAAACATGGATA+TGG + chr8_4:38648911-38648930 None:intergenic 25.0%
! TCGTTAAAACTTATGAAACA+TGG + chr8_4:38648917-38648936 None:intergenic 25.0%
!!! ATTTTTTTTAAGGGGTACAT+CGG + chr8_4:38649027-38649046 None:intergenic 25.0%
! TTTGTAATTTGATGTCATGA+AGG + chr8_4:38649094-38649113 None:intergenic 25.0%
! AATTTGAAGATTCTTTGACA+GGG + chr8_4:38649165-38649184 None:intergenic 25.0%
! TAATTTGAAGATTCTTTGAC+AGG + chr8_4:38649166-38649185 None:intergenic 25.0%
!!! ATTTTTTTATAGGGGTAAAC+CGG - chr8_4:38649205-38649224 Msa1325860:intron 25.0%
!!! AGTGAACTGCAATTTTTTAT+AGG - chr8_4:38649288-38649307 Msa1325860:CDS 25.0%
!!! GTGAACTGCAATTTTTTATA+GGG - chr8_4:38649289-38649308 Msa1325860:CDS 25.0%
!!! TGAACTGCAATTTTTTATAG+GGG - chr8_4:38649290-38649309 Msa1325860:CDS 25.0%
!!! AATTTTTTATAGGGGTAAAC+CGG - chr8_4:38649298-38649317 Msa1325860:CDS 25.0%
!! CAATTCAGTGATGTTTATTT+TGG - chr8_4:38649879-38649898 Msa1325860:CDS 25.0%
!! GTTTCTCTGTGAAAATTTTA+AGG - chr8_4:38649901-38649920 Msa1325860:CDS 25.0%
!!! CACTTTTTTTTGTTTGGAAT+TGG - chr8_4:38649978-38649997 Msa1325860:intron 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG + chr8_4:38650232-38650251 None:intergenic 25.0%
! AAACACAAAACTATTGGTAT+TGG - chr8_4:38650058-38650077 Msa1325860:intron 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG + chr8_4:38650232-38650251 None:intergenic 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG + chr8_4:38650232-38650251 None:intergenic 25.0%
!! TTTTAACAGAAAGTTAACAG+AGG - chr8_4:38650200-38650219 Msa1325860:intron 25.0%
! TTTAACAGAAAGTTAACAGA+GGG - chr8_4:38650201-38650220 Msa1325860:intron 25.0%
! CTTGCACTTTGTAAAAATAT+TGG + chr8_4:38650234-38650253 None:intergenic 25.0%
!!! CAATATTTTTACAAAGTGCA+AGG - chr8_4:38650232-38650251 Msa1325860:intron 25.0%
!! ATTTGGTTTAAATGTGTCAT+TGG + chr8_4:38650319-38650338 None:intergenic 25.0%
! TGAGTGAATTTGATTACAAT+TGG - chr8_4:38650375-38650394 Msa1325860:intron 25.0%
!! TAATTTTCTTAAACTTACCC+TGG - chr8_4:38650410-38650429 Msa1325860:intron 25.0%
! ATAATTGAGTGGCATATTAT+TGG - chr8_4:38650524-38650543 Msa1325860:intron 25.0%
!! TTTACATCCATTAAAAGTGT+AGG - chr8_4:38650551-38650570 Msa1325860:intron 25.0%
!! AGGATTTGAGATTTATAAGT+TGG - chr8_4:38650571-38650590 Msa1325860:intron 25.0%
! ACTTCTTTAAATATGGAATC+AGG - chr8_4:38650731-38650750 Msa1325860:intron 25.0%
! AGTTATGTTCAACTTTCTTT+GGG + chr8_4:38651040-38651059 None:intergenic 25.0%
!! TTGTAATTGCATGAAGATTT+TGG - chr8_4:38651106-38651125 Msa1325860:intron 25.0%
! ATGTACAACTAATAGCAAAT+TGG + chr8_4:38651150-38651169 None:intergenic 25.0%
!! AAACTGTTGAAATGTTTTAC+AGG - chr8_4:38651935-38651954 Msa1325860:intron 25.0%
!!! AAATTTGATTCGGTTCTAAA+TGG + chr8_4:38652138-38652157 None:intergenic 25.0%
!!! TTTGTTGTTTTATTTAGAGC+AGG - chr8_4:38652206-38652225 Msa1325860:CDS 25.0%
! TTAAACCATACATTAGTGAA+GGG + chr8_4:38652336-38652355 None:intergenic 25.0%
! ATTAAACCATACATTAGTGA+AGG + chr8_4:38652337-38652356 None:intergenic 25.0%
!!! CATATCGATCCATTTTATTT+TGG - chr8_4:38652433-38652452 Msa1325860:five_prime_UTR 25.0%
! TTGGTTTAAATCTTGAAAAG+TGG - chr8_4:38652452-38652471 Msa1325860:five_prime_UTR 25.0%
! GTTATAAAATTATTAGGCTC+AGG - chr8_4:38652474-38652493 Msa1325860:five_prime_UTR 25.0%
CACAAAAAGAGGAAAATTTG+GGG + chr8_4:38648138-38648157 None:intergenic 30.0%
CACACAAAAAGAGGAAAATT+TGG + chr8_4:38648140-38648159 None:intergenic 30.0%
! CAAATTTTCCTCTTTTTGTG+TGG - chr8_4:38648138-38648157 Msa1325860:three_prime_UTR 30.0%
! CTTACAAGCATCAACTATTT+TGG + chr8_4:38648166-38648185 None:intergenic 30.0%
AATCTCTACTCGCAATAAAT+TGG - chr8_4:38648199-38648218 Msa1325860:three_prime_UTR 30.0%
CAGCAATATCATAAAGAGAA+AGG + chr8_4:38648492-38648511 None:intergenic 30.0%
CTTTCTCTTTATGATATTGC+TGG - chr8_4:38648490-38648509 Msa1325860:three_prime_UTR 30.0%
AGAATCTTTAAATCACAGGT+TGG + chr8_4:38649060-38649079 None:intergenic 30.0%
CCAAAGAATCTTTAAATCAC+AGG + chr8_4:38649064-38649083 None:intergenic 30.0%
CCTGTGATTTAAAGATTCTT+TGG - chr8_4:38649061-38649080 Msa1325860:CDS 30.0%
ATTTGAAGATTCTTTGACAG+GGG + chr8_4:38649164-38649183 None:intergenic 30.0%
GAATCTTCAAATTACAGTGT+TGG - chr8_4:38649172-38649191 Msa1325860:intron 30.0%
! CATGTAATATTGGTGATTTC+CGG + chr8_4:38649227-38649246 None:intergenic 30.0%
GGAAATCACCAATATTACAT+GGG - chr8_4:38649226-38649245 Msa1325860:intron 30.0%
!!! TTAACCCTTAACCTTTTTTG+TGG - chr8_4:38649262-38649281 Msa1325860:CDS 30.0%
!!! TAACCCTTAACCTTTTTTGT+GGG - chr8_4:38649263-38649282 Msa1325860:CDS 30.0%
! CATGTAATATTGGTGATTTC+CGG + chr8_4:38649227-38649246 None:intergenic 30.0%
GGAAATCACCAATATTACAT+GGG - chr8_4:38649226-38649245 Msa1325860:intron 30.0%
! TTAACCCTTAACCTTATTTG+TGG - chr8_4:38649355-38649374 Msa1325860:intron 30.0%
! TAACCCTTAACCTTATTTGT+GGG - chr8_4:38649356-38649375 Msa1325860:intron 30.0%
!!! CATTTGATTTTAGAACACGA+AGG - chr8_4:38649423-38649442 Msa1325860:intron 30.0%
! CCTGCATTTAAAACCAAAAT+TGG + chr8_4:38649620-38649639 None:intergenic 30.0%
!!! CCAATTTTGGTTTTAAATGC+AGG - chr8_4:38649617-38649636 Msa1325860:intron 30.0%
!!! TCCTTGCACTTTTTTTTGTT+TGG - chr8_4:38649972-38649991 Msa1325860:intron 30.0%
! TCCAAACAAAAAAAAGTGCA+AGG + chr8_4:38649976-38649995 None:intergenic 30.0%
!! CCAATATTTTTACAAAGTGC+AGG + chr8_4:38650231-38650250 None:intergenic 30.0%
CCTGCACTTTGTAAAAATAT+TGG - chr8_4:38650003-38650022 Msa1325860:intron 30.0%
!! CCAATATTTTTACAAAGTGC+AGG + chr8_4:38650231-38650250 None:intergenic 30.0%
CCTGCACTTTGTAAAAATAT+TGG - chr8_4:38650003-38650022 Msa1325860:intron 30.0%
!! CCAATATTTTTACAAAGTGC+AGG + chr8_4:38650231-38650250 None:intergenic 30.0%
CCTGCACTTTGTAAAAATAT+TGG - chr8_4:38650003-38650022 Msa1325860:intron 30.0%
!!! CACTTTTTTTTGTTTGGCAT+TGG + chr8_4:38650259-38650278 None:intergenic 30.0%
! CTCAAATCCTACACTTTTAA+TGG + chr8_4:38650561-38650580 None:intergenic 30.0%
GCTGAGTACTTCTTTAAATA+TGG - chr8_4:38650724-38650743 Msa1325860:intron 30.0%
TTACAACTCTTGATGTAGTT+AGG - chr8_4:38650856-38650875 Msa1325860:intron 30.0%
TACAACTCTTGATGTAGTTA+GGG - chr8_4:38650857-38650876 Msa1325860:intron 30.0%
AAACATGAGGATTTGAGTAT+TGG - chr8_4:38650992-38651011 Msa1325860:CDS 30.0%
CAGTTATGTTCAACTTTCTT+TGG + chr8_4:38651041-38651060 None:intergenic 30.0%
!! AACATTTGATTTTTCTGCAG+AGG - chr8_4:38651170-38651189 Msa1325860:intron 30.0%
GAATTACCTGAGAAAATAGT+GGG + chr8_4:38651239-38651258 None:intergenic 30.0%
AAAATGCAAGTTAAAGAGCA+GGG + chr8_4:38651261-38651280 None:intergenic 30.0%
! CGTACTTCTAACATGTATTT+TGG - chr8_4:38651281-38651300 Msa1325860:intron 30.0%
TCTTAACTGTTCTCTTGTAT+AGG - chr8_4:38651334-38651353 Msa1325860:intron 30.0%
ACTACAAGAATTATGATTCC+TGG - chr8_4:38651566-38651585 Msa1325860:intron 30.0%
CTACAAGAATTATGATTCCT+GGG - chr8_4:38651567-38651586 Msa1325860:intron 30.0%
!! ACTTGTTGTGTTCATAGAAA+CGG - chr8_4:38651868-38651887 Msa1325860:intron 30.0%
CAAAAGAATAAAACAACTGG+TGG + chr8_4:38651907-38651926 None:intergenic 30.0%
ACTTAAGTCATCTATTGAGA+AGG - chr8_4:38652049-38652068 Msa1325860:intron 30.0%
CTTAAGTCATCTATTGAGAA+GGG - chr8_4:38652050-38652069 Msa1325860:intron 30.0%
ACAATTGTTTGTAATGTTGC+CGG - chr8_4:38652170-38652189 Msa1325860:CDS 30.0%
AATGAATGAACGCTTATGCT+TGG + chr8_4:38648240-38648259 None:intergenic 35.0%
!! TTCAAAGGTGCTAACTTTAC+TGG - chr8_4:38648624-38648643 Msa1325860:exon 35.0%
!! ACTTTACTGGTGCTGTTTAT+TGG - chr8_4:38648637-38648656 Msa1325860:CDS 35.0%
!! CTTTACTGGTGCTGTTTATT+GGG - chr8_4:38648638-38648657 Msa1325860:CDS 35.0%
TGTGAGAGATCGGAATTAAT+CGG - chr8_4:38648668-38648687 Msa1325860:CDS 35.0%
GAAATCGCTCATATTATAGG+GGG + chr8_4:38649005-38649024 None:intergenic 35.0%
GGAAATCGCTCATATTATAG+GGG + chr8_4:38649006-38649025 None:intergenic 35.0%
CGGAAATCGCTCATATTATA+GGG + chr8_4:38649007-38649026 None:intergenic 35.0%
TCGGAAATCGCTCATATTAT+AGG + chr8_4:38649008-38649027 None:intergenic 35.0%
TTTGAAGATTCTTTGACAGG+GGG + chr8_4:38649163-38649182 None:intergenic 35.0%
CGGAAATCACCAATATTACA+TGG - chr8_4:38649225-38649244 Msa1325860:intron 35.0%
AATCACCAATATTACATGGG+AGG - chr8_4:38649229-38649248 Msa1325860:intron 35.0%
GTTTACCTCCCATGTAATAT+TGG + chr8_4:38649237-38649256 None:intergenic 35.0%
!!! AACCCTTAACCTTTTTTGTG+GGG - chr8_4:38649264-38649283 Msa1325860:CDS 35.0%
CGGAAATCACCAATATTACA+TGG - chr8_4:38649225-38649244 Msa1325860:intron 35.0%
AATCACCAATATTACATGGG+AGG - chr8_4:38649229-38649248 Msa1325860:intron 35.0%
GTTTACCTCCCATGTAATAT+TGG + chr8_4:38649237-38649256 None:intergenic 35.0%
! AACCCTTAACCTTATTTGTG+GGG - chr8_4:38649357-38649376 Msa1325860:intron 35.0%
!!! ACACGAAGGTACTCTTTTAT+TGG - chr8_4:38649437-38649456 Msa1325860:intron 35.0%
!!! TGGTTTTAAATGCAGGTAAC+TGG - chr8_4:38649624-38649643 Msa1325860:intron 35.0%
!!! GGTTTTAAATGCAGGTAACT+GGG - chr8_4:38649625-38649644 Msa1325860:intron 35.0%
! GATCTTTTCAACATTAACGC+TGG - chr8_4:38649744-38649763 Msa1325860:intron 35.0%
! CAAAATCTGATGAAAGTGCA+GGG + chr8_4:38650292-38650311 None:intergenic 35.0%
!! CTTTCATCAGATTTTGGCAT+TGG - chr8_4:38649949-38649968 Msa1325860:CDS 35.0%
! TGCCAAACAAAAAAAAGTGC+AGG - chr8_4:38650260-38650279 Msa1325860:intron 35.0%
! GCCAAACAAAAAAAAGTGCA+GGG - chr8_4:38650261-38650280 Msa1325860:intron 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG + chr8_4:38650265-38650284 None:intergenic 35.0%
!! CTTTCATCAGATTTTGGCAT+TGG + chr8_4:38649949-38649968 None:intergenic 35.0%
! CAAAATCTGATGAAAGTGCA+GGG - chr8_4:38650292-38650311 Msa1325860:intron 35.0%
! TGTACTAGCTTATGCAATGA+AGG - chr8_4:38650349-38650368 Msa1325860:intron 35.0%
TTGAAAACTTCAGCAGCAAT+GGG + chr8_4:38650798-38650817 None:intergenic 35.0%
TTTCCTTAAGACGAAACATG+AGG - chr8_4:38650979-38650998 Msa1325860:CDS 35.0%
AATCCTCATGTTTCGTCTTA+AGG + chr8_4:38650985-38651004 None:intergenic 35.0%
!!! TGTTTTTTCTCGAGCAAGAA+CGG - chr8_4:38651064-38651083 Msa1325860:intron 35.0%
! TATTCTCCCACTATTTTCTC+AGG - chr8_4:38651230-38651249 Msa1325860:intron 35.0%
GGAATTACCTGAGAAAATAG+TGG + chr8_4:38651240-38651259 None:intergenic 35.0%
GAAAATGCAAGTTAAAGAGC+AGG + chr8_4:38651262-38651281 None:intergenic 35.0%
AATGACATCATCATCCAGAT+TGG + chr8_4:38651372-38651391 None:intergenic 35.0%
! TCTGGATGATGATGTCATTA+AGG - chr8_4:38651373-38651392 Msa1325860:intron 35.0%
TGATTTAGCCATGTTGATAC+TGG - chr8_4:38651486-38651505 Msa1325860:intron 35.0%
!! GTTCATTCTCTTGTTGTTTG+TGG - chr8_4:38651821-38651840 Msa1325860:intron 35.0%
!! TTGTTGTTTGTGGATGCATA+GGG - chr8_4:38651831-38651850 Msa1325860:intron 35.0%
! GTTGAAATGTTTTACAGGTG+AGG - chr8_4:38651940-38651959 Msa1325860:intron 35.0%
! AATGTTTTACAGGTGAGGAT+TGG - chr8_4:38651945-38651964 Msa1325860:intron 35.0%
! ATGTTTTACAGGTGAGGATT+GGG - chr8_4:38651946-38651965 Msa1325860:intron 35.0%
AATGGTGTAGAGGAAATTCT+GGG - chr8_4:38651972-38651991 Msa1325860:intron 35.0%
!! CTCTCAGATTTTGAGAAACA+AGG - chr8_4:38652005-38652024 Msa1325860:intron 35.0%
ATGACTTAAGTTCAGACTTG+AGG + chr8_4:38652040-38652059 None:intergenic 35.0%
GTATGACATGTTCGATTACT+GGG + chr8_4:38652090-38652109 None:intergenic 35.0%
TGTATGACATGTTCGATTAC+TGG + chr8_4:38652091-38652110 None:intergenic 35.0%
TCGAACATGTCATACATTTC+TGG - chr8_4:38652095-38652114 Msa1325860:intron 35.0%
AAGAACAGTTTATTGCTGCA+GGG - chr8_4:38652259-38652278 Msa1325860:CDS 35.0%
CATTACGAATGGAAATGGAA+AGG + chr8_4:38652312-38652331 None:intergenic 35.0%
CTTTCCATTTCCATTCGTAA+TGG - chr8_4:38652310-38652329 Msa1325860:CDS 35.0%
AAAATTATTAGGCTCAGGCT+AGG - chr8_4:38652479-38652498 Msa1325860:five_prime_UTR 35.0%
AAATTATTAGGCTCAGGCTA+GGG - chr8_4:38652480-38652499 Msa1325860:five_prime_UTR 35.0%
!! TTTTGGGTCCACACAAAAAG+AGG + chr8_4:38648149-38648168 None:intergenic 40.0%
GTTGATGCTTGTAAGATGCT+CGG - chr8_4:38648171-38648190 Msa1325860:three_prime_UTR 40.0%
GGGTTATTCTTGTGAGAGAT+CGG - chr8_4:38648658-38648677 Msa1325860:CDS 40.0%
TCTTAAATGATCAGCGGTGT+CGG - chr8_4:38648852-38648871 Msa1325860:intron 40.0%
!!! ACCCTTAACCTTTTTTGTGG+GGG - chr8_4:38649265-38649284 Msa1325860:CDS 40.0%
TCCCCCACAAAAAAGGTTAA+GGG + chr8_4:38649269-38649288 None:intergenic 40.0%
! ACCCTTAACCTTATTTGTGG+GGG - chr8_4:38649358-38649377 Msa1325860:intron 40.0%
TCCCCCACAAATAAGGTTAA+GGG + chr8_4:38649362-38649381 None:intergenic 40.0%
AGTTTACTCCCCCACAAATA+AGG + chr8_4:38649369-38649388 None:intergenic 40.0%
AAAATCACGGCATTGCAGAA+GGG + chr8_4:38649543-38649562 None:intergenic 40.0%
AAAAATCACGGCATTGCAGA+AGG + chr8_4:38649544-38649563 None:intergenic 40.0%
! TGTTGTTGAGCTGTTGATTG+AGG - chr8_4:38649578-38649597 Msa1325860:intron 40.0%
AGATGAGCTTGGAAAAGCTT+TGG - chr8_4:38649659-38649678 Msa1325860:intron 40.0%
GACGTTGTTATAATTCCTGC+CGG - chr8_4:38649690-38649709 Msa1325860:intron 40.0%
GCAGTACTTAGAAATAGCAG+TGG + chr8_4:38649787-38649806 None:intergenic 40.0%
ACGAAAACAGAGACTCACAT+GGG + chr8_4:38649811-38649830 None:intergenic 40.0%
AACGAAAACAGAGACTCACA+TGG + chr8_4:38649812-38649831 None:intergenic 40.0%
! CCAAAATCTGATGAAAGTGC+AGG + chr8_4:38650291-38650310 None:intergenic 40.0%
! CCTGCACTTTCATCAGATTT+TGG - chr8_4:38649943-38649962 Msa1325860:CDS 40.0%
!! ATATTGGTATTGGTGCTACG+TGG - chr8_4:38650130-38650149 Msa1325860:intron 40.0%
! CCTGCACTTTCATCAGATTT+TGG + chr8_4:38649943-38649962 None:intergenic 40.0%
! CCAAAATCTGATGAAAGTGC+AGG - chr8_4:38650291-38650310 Msa1325860:intron 40.0%
CCAGTCTAAGAGTAAATCCA+GGG + chr8_4:38650430-38650449 None:intergenic 40.0%
ACCAGTCTAAGAGTAAATCC+AGG + chr8_4:38650431-38650450 None:intergenic 40.0%
TGAAAACTTCAGCAGCAATG+GGG + chr8_4:38650797-38650816 None:intergenic 40.0%
CTTGAAAACTTCAGCAGCAA+TGG + chr8_4:38650799-38650818 None:intergenic 40.0%
!! TGCTGCTGAAGTTTTCAAGA+AGG - chr8_4:38650800-38650819 Msa1325860:intron 40.0%
!! CTGAAGTTTTCAAGAAGGCA+GGG - chr8_4:38650805-38650824 Msa1325860:intron 40.0%
TACGACGAGAAGAGATTGTT+TGG - chr8_4:38650831-38650850 Msa1325860:intron 40.0%
ACGACGAGAAGAGATTGTTT+GGG - chr8_4:38650832-38650851 Msa1325860:intron 40.0%
AGGGCAAAAACTTTCTATGC+TGG - chr8_4:38650876-38650895 Msa1325860:intron 40.0%
GGGCAAAAACTTTCTATGCT+GGG - chr8_4:38650877-38650896 Msa1325860:intron 40.0%
GAAAGCTAATGTTCCAGTTG+CGG - chr8_4:38650899-38650918 Msa1325860:intron 40.0%
AAAGCTAATGTTCCAGTTGC+GGG - chr8_4:38650900-38650919 Msa1325860:intron 40.0%
!!! GTTTTTTCTCGAGCAAGAAC+GGG - chr8_4:38651065-38651084 Msa1325860:intron 40.0%
!!! TTTTTTCTCGAGCAAGAACG+GGG - chr8_4:38651066-38651085 Msa1325860:intron 40.0%
GAGGTCAATGTACCTGTTAT+AGG - chr8_4:38651189-38651208 Msa1325860:intron 40.0%
GTCAATGTACCTGTTATAGG+AGG - chr8_4:38651192-38651211 Msa1325860:intron 40.0%
TTACGCCATTGACAAAGTTG+CGG + chr8_4:38651462-38651481 None:intergenic 40.0%
CATGTTTCTTGCAGTTATGC+TGG - chr8_4:38651623-38651642 Msa1325860:intron 40.0%
GAACTCCATTAAGACCTTTG+AGG + chr8_4:38651670-38651689 None:intergenic 40.0%
AGGAAGTTCAGCAATGAGAT+TGG + chr8_4:38651723-38651742 None:intergenic 40.0%
ACTTCCTTTCTTTGCTTCCA+AGG - chr8_4:38651736-38651755 Msa1325860:intron 40.0%
ATCACCTTGGAAGCAAAGAA+AGG + chr8_4:38651743-38651762 None:intergenic 40.0%
!! CTTGTTGTTTGTGGATGCAT+AGG - chr8_4:38651830-38651849 Msa1325860:intron 40.0%
GAATGGTGTAGAGGAAATTC+TGG - chr8_4:38651971-38651990 Msa1325860:intron 40.0%
CAAAATCTGAGAGAGAACCT+AGG + chr8_4:38651998-38652017 None:intergenic 40.0%
! GTTCAGACTTGAGGTTTTCA+AGG + chr8_4:38652031-38652050 None:intergenic 40.0%
!! ACATGTCATACATTTCTGGC+AGG - chr8_4:38652099-38652118 Msa1325860:intron 40.0%
!! ATACATTTCTGGCAGGTTAC+TGG - chr8_4:38652106-38652125 Msa1325860:intron 40.0%
CAAGAACAGTTTATTGCTGC+AGG - chr8_4:38652258-38652277 Msa1325860:CDS 40.0%
! TGGAAAGGCCAATCTAAAAC+TGG + chr8_4:38652297-38652316 None:intergenic 40.0%
AATGGCCCTTCACTAATGTA+TGG - chr8_4:38652328-38652347 Msa1325860:CDS 40.0%
TGTGGACATATGTGAACTGT+TGG - chr8_4:38652540-38652559 Msa1325860:five_prime_UTR 40.0%
GGATGTGCATCATAAATCAG+TGG + chr8_4:38652578-38652597 None:intergenic 40.0%
TTATGCTTGGAGAGTGACGA+TGG + chr8_4:38648227-38648246 None:intergenic 45.0%
AATAGAGAGAGAGGGAGAGA+GGG + chr8_4:38648272-38648291 None:intergenic 45.0%
TCTCCCTCTCTCTCTATTCT+CGG - chr8_4:38648274-38648293 Msa1325860:three_prime_UTR 45.0%
CTTCCGAGAATAGAGAGAGA+GGG + chr8_4:38648280-38648299 None:intergenic 45.0%
TCTTCCGAGAATAGAGAGAG+AGG + chr8_4:38648281-38648300 None:intergenic 45.0%
! TTCTCGAAGCATCCATGATG+AGG - chr8_4:38648302-38648321 Msa1325860:three_prime_UTR 45.0%
!! TTGACGGATCTGAGTATCGA+CGG + chr8_4:38648328-38648347 None:intergenic 45.0%
AGCTTCATGAGAAGAGAGAG+GGG + chr8_4:38648451-38648470 None:intergenic 45.0%
GAGCTTCATGAGAAGAGAGA+GGG + chr8_4:38648452-38648471 None:intergenic 45.0%
TGAGCTTCATGAGAAGAGAG+AGG + chr8_4:38648453-38648472 None:intergenic 45.0%
GAGAAAGGGTTGAAACGAGA+GGG + chr8_4:38648477-38648496 None:intergenic 45.0%
AGAGAAAGGGTTGAAACGAG+AGG + chr8_4:38648478-38648497 None:intergenic 45.0%
TATGATATTGCTGGTACCCC+TGG - chr8_4:38648499-38648518 Msa1325860:three_prime_UTR 45.0%
!! GGAGTTGATGTGGCTAACAT+CGG + chr8_4:38648533-38648552 None:intergenic 45.0%
!! TGAAAAGGGTACCTGAGATC+TGG + chr8_4:38648554-38648573 None:intergenic 45.0%
GTGTCTATGTCTGTCTTGTG+CGG - chr8_4:38648882-38648901 Msa1325860:intron 45.0%
CTCCCCCACAAAAAAGGTTA+AGG + chr8_4:38649270-38649289 None:intergenic 45.0%
AGTTCACTCCCCCACAAAAA+AGG + chr8_4:38649276-38649295 None:intergenic 45.0%
CTCCCCCACAAATAAGGTTA+AGG + chr8_4:38649363-38649382 None:intergenic 45.0%
! TGAGCTTGGAAAAGCTTTGG+AGG - chr8_4:38649662-38649681 Msa1325860:intron 45.0%
!! GAGCTTGGAAAAGCTTTGGA+GGG - chr8_4:38649663-38649682 Msa1325860:intron 45.0%
AGATCATCACGAGTCATTCC+AGG + chr8_4:38649729-38649748 None:intergenic 45.0%
GAAAACAGAGACTCACATGG+GGG + chr8_4:38649809-38649828 None:intergenic 45.0%
CGAAAACAGAGACTCACATG+GGG + chr8_4:38649810-38649829 None:intergenic 45.0%
CTACGTGGCGTGAAATGATT+GGG - chr8_4:38650145-38650164 Msa1325860:intron 45.0%
CCCTGGATTTACTCTTAGAC+TGG - chr8_4:38650427-38650446 Msa1325860:intron 45.0%
!! GCTGAAGTTTTCAAGAAGGC+AGG - chr8_4:38650804-38650823 Msa1325860:intron 45.0%
CGACGAGAAGAGATTGTTTG+GGG - chr8_4:38650833-38650852 Msa1325860:intron 45.0%
ACACTTTACATACCCGCAAC+TGG + chr8_4:38650915-38650934 None:intergenic 45.0%
! TTTTTCTCGAGCAAGAACGG+GGG - chr8_4:38651067-38651086 Msa1325860:intron 45.0%
GGAGAATAGTAACTCCTGCA+TGG + chr8_4:38651218-38651237 None:intergenic 45.0%
!! TCATCATCCAGATTGGCTTG+AGG + chr8_4:38651365-38651384 None:intergenic 45.0%
! TCATTAAGGCTCTAACTGCG+AGG - chr8_4:38651387-38651406 Msa1325860:intron 45.0%
AACCTCTGTTCCTCCATCTT+GGG + chr8_4:38651414-38651433 None:intergenic 45.0%
TAGCCATGTTGATACTGGAC+TGG - chr8_4:38651491-38651510 Msa1325860:intron 45.0%
TGTCCAGTCCAGTATCAACA+TGG + chr8_4:38651497-38651516 None:intergenic 45.0%
ACTACACGAAAAACTCACCC+AGG + chr8_4:38651587-38651606 None:intergenic 45.0%
GAGGCAAGCATCAGCAAATA+TGG + chr8_4:38651651-38651670 None:intergenic 45.0%
TTTGCTGATGCTTGCCTCAA+AGG - chr8_4:38651653-38651672 Msa1325860:intron 45.0%
GCTTGCCTCAAAGGTCTTAA+TGG - chr8_4:38651662-38651681 Msa1325860:intron 45.0%
TACGAGCACTCAACAACATC+TGG + chr8_4:38651692-38651711 None:intergenic 45.0%
CATTGCAGTTTCGATCACCT+TGG + chr8_4:38651756-38651775 None:intergenic 45.0%
GATTGGGAAGAATGGTGTAG+AGG - chr8_4:38651962-38651981 Msa1325860:intron 45.0%
TGACATGTTCGATTACTGGG+AGG + chr8_4:38652087-38652106 None:intergenic 45.0%
AGGGCCATTACGAATGGAAA+TGG + chr8_4:38652317-38652336 None:intergenic 45.0%
TAGTGAAGGGCCATTACGAA+TGG + chr8_4:38652323-38652342 None:intergenic 45.0%
GAATAGAGAGAGAGGGAGAG+AGG + chr8_4:38648273-38648292 None:intergenic 50.0%
TAACATCGGCAGCAACACCA+GGG + chr8_4:38648519-38648538 None:intergenic 50.0%
!! CCTGAGATCTGGAGTTGATG+TGG + chr8_4:38648543-38648562 None:intergenic 50.0%
CCACATCAACTCCAGATCTC+AGG - chr8_4:38648540-38648559 Msa1325860:three_prime_UTR 50.0%
! ATGAGAGCACAAGCACTCCT+CGG - chr8_4:38648772-38648791 Msa1325860:intron 50.0%
TACGCAGGTGAAGATGAGCT+TGG - chr8_4:38649648-38649667 Msa1325860:intron 50.0%
CGAGTCATTCCAGGCTTTCT+GGG + chr8_4:38649720-38649739 None:intergenic 50.0%
ACGAGTCATTCCAGGCTTTC+TGG + chr8_4:38649721-38649740 None:intergenic 50.0%
GCTACGTGGCGTGAAATGAT+TGG - chr8_4:38650144-38650163 Msa1325860:intron 50.0%
! AAAACTAACGGAGTGCCACG+TGG + chr8_4:38650171-38650190 None:intergenic 50.0%
TGGGGACAGTTGAGTTCACA+GGG + chr8_4:38650779-38650798 None:intergenic 50.0%
ATGGGGACAGTTGAGTTCAC+AGG + chr8_4:38650780-38650799 None:intergenic 50.0%
! TTTTCTCGAGCAAGAACGGG+GGG - chr8_4:38651068-38651087 Msa1325860:intron 50.0%
!!! TTTTGGCTTCCAAACGCTGC+TGG - chr8_4:38651298-38651317 Msa1325860:intron 50.0%
TTCCAAACGCTGCTGGTATG+TGG - chr8_4:38651305-38651324 Msa1325860:intron 50.0%
TACCACATACCAGCAGCGTT+TGG + chr8_4:38651310-38651329 None:intergenic 50.0%
CAACCTCTGTTCCTCCATCT+TGG + chr8_4:38651415-38651434 None:intergenic 50.0%
AACAGAGGTTGTGACTGCCA+AGG - chr8_4:38651424-38651443 Msa1325860:intron 50.0%
GGGTTCCGCAACTTTGTCAA+TGG - chr8_4:38651454-38651473 Msa1325860:intron 50.0%
CAGGTGAGGATTGGGAAGAA+TGG - chr8_4:38651954-38651973 Msa1325860:intron 50.0%
GTAGAGGAAATTCTGGGCCT+AGG - chr8_4:38651978-38651997 Msa1325860:intron 50.0%
GTTTGTAATGTTGCCGGCAG+AGG - chr8_4:38652176-38652195 Msa1325860:CDS 50.0%
TTATTAGGCTCAGGCTAGGG+TGG - chr8_4:38652483-38652502 Msa1325860:five_prime_UTR 50.0%
GTCCACGTGGATGAGTTATG+TGG - chr8_4:38652522-38652541 Msa1325860:five_prime_UTR 50.0%
GTCCACATAACTCATCCACG+TGG + chr8_4:38652527-38652546 None:intergenic 50.0%
!! GAGTATCGACGGCCTCATCA+TGG + chr8_4:38648317-38648336 None:intergenic 55.0%
CTTGCGTTCAGGAACCGGTT+CGG + chr8_4:38648392-38648411 None:intergenic 55.0%
AGAATGGCCACCTTGCGTTC+AGG + chr8_4:38648403-38648422 None:intergenic 55.0%
GAACGCAAGGTGGCCATTCT+CGG - chr8_4:38648403-38648422 Msa1325860:three_prime_UTR 55.0%
AACATCGGCAGCAACACCAG+GGG + chr8_4:38648518-38648537 None:intergenic 55.0%
CTAACATCGGCAGCAACACC+AGG + chr8_4:38648520-38648539 None:intergenic 55.0%
GCACAAGCACTCCTCGGATT+AGG - chr8_4:38648778-38648797 Msa1325860:intron 55.0%
! TCCTCGGATTAGGCGTGTCT+CGG - chr8_4:38648788-38648807 Msa1325860:intron 55.0%
ATGCAGGTAACTGGGTACGC+AGG - chr8_4:38649633-38649652 Msa1325860:intron 55.0%
CGTGAAATGATTGGGCCACG+TGG - chr8_4:38650153-38650172 Msa1325860:intron 55.0%
CCTGCATGGCCTCCTATAAC+AGG + chr8_4:38651204-38651223 None:intergenic 55.0%
CCTGTTATAGGAGGCCATGC+AGG - chr8_4:38651201-38651220 Msa1325860:intron 55.0%
GGCATCACCTCAAGCCAATC+TGG - chr8_4:38651355-38651374 Msa1325860:intron 55.0%
CTAACTGCGAGGACCCAAGA+TGG - chr8_4:38651398-38651417 Msa1325860:intron 55.0%
GACCCAAGATGGAGGAACAG+AGG - chr8_4:38651409-38651428 Msa1325860:intron 55.0%
TGTGACTGCCAAGGCTGGAA+AGG - chr8_4:38651433-38651452 Msa1325860:intron 55.0%
GTGACTGCCAAGGCTGGAAA+GGG - chr8_4:38651434-38651453 Msa1325860:intron 55.0%
TGTAATGTTGCCGGCAGAGG+TGG - chr8_4:38652179-38652198 Msa1325860:CDS 55.0%
AACAAAGCCACCACCTCTGC+CGG + chr8_4:38652192-38652211 None:intergenic 55.0%
! CGAACCGGTTCCTGAACGCA+AGG - chr8_4:38648390-38648409 Msa1325860:three_prime_UTR 60.0%
! ACCGGTTCCTGAACGCAAGG+TGG - chr8_4:38648393-38648412 Msa1325860:three_prime_UTR 60.0%
GCCACCTTGCGTTCAGGAAC+CGG + chr8_4:38648397-38648416 None:intergenic 60.0%
ACTGCGAGGACCCAAGATGG+AGG - chr8_4:38651401-38651420 Msa1325860:intron 60.0%
GAGGTTGTGACTGCCAAGGC+TGG - chr8_4:38651428-38651447 Msa1325860:intron 60.0%
TGCGGAACCCTTTCCAGCCT+TGG + chr8_4:38651444-38651463 None:intergenic 60.0%
AATGTTGCCGGCAGAGGTGG+TGG - chr8_4:38652182-38652201 Msa1325860:CDS 60.0%
CTCAGGCTAGGGTGGATGAG+TGG - chr8_4:38652491-38652510 Msa1325860:five_prime_UTR 60.0%
AGGCTAGGGTGGATGAGTGG+AGG - chr8_4:38652494-38652513 Msa1325860:five_prime_UTR 60.0%
AGTGGAGGAAGTCGTCCACG+TGG - chr8_4:38652509-38652528 Msa1325860:five_prime_UTR 60.0%
!! GCGGGACACGGCTGACTTGA+CGG + chr8_4:38648344-38648363 None:intergenic 65.0%
! GCGGGTTATGCTGCGGGACA+CGG + chr8_4:38648356-38648375 None:intergenic 65.0%
!! AGCCACGGCGGGTTATGCTG+CGG + chr8_4:38648363-38648382 None:intergenic 65.0%
TTCGGTGGCATAGCCACGGC+GGG + chr8_4:38648374-38648393 None:intergenic 65.0%
! GTTCGGTGGCATAGCCACGG+CGG + chr8_4:38648375-38648394 None:intergenic 65.0%
!! CCGGTTCGGTGGCATAGCCA+CGG + chr8_4:38648378-38648397 None:intergenic 65.0%
CCGTGGCTATGCCACCGAAC+CGG - chr8_4:38648375-38648394 Msa1325860:three_prime_UTR 65.0%
!! GCGTTCAGGAACCGGTTCGG+TGG + chr8_4:38648389-38648408 None:intergenic 65.0%
GCCGAGACACGCCTAATCCG+AGG + chr8_4:38648792-38648811 None:intergenic 65.0%
TCCAGGCTTTCTGGGCACGC+CGG + chr8_4:38649712-38649731 None:intergenic 65.0%
CTCGAGCAAGAACGGGGGGT+CGG - chr8_4:38651072-38651091 Msa1325860:intron 65.0%
AGCAAGAACGGGGGGTCGGT+GGG - chr8_4:38651076-38651095 Msa1325860:intron 65.0%
TCCCGCAGCATAACCCGCCG+TGG - chr8_4:38648358-38648377 Msa1325860:three_prime_UTR 70.0%
!! GCCACGGCGGGTTATGCTGC+GGG + chr8_4:38648362-38648381 None:intergenic 70.0%
!! GTGGCCATTCTCGGTGCCGC+CGG - chr8_4:38648412-38648431 Msa1325860:three_prime_UTR 70.0%
!! CCATTCTCGGTGCCGCCGGT+GGG - chr8_4:38648416-38648435 Msa1325860:three_prime_UTR 70.0%
GAGGGGCTGACCGATCCCAC+CGG + chr8_4:38648434-38648453 None:intergenic 70.0%
GAGCAAGAACGGGGGGTCGG+TGG - chr8_4:38651075-38651094 Msa1325860:intron 70.0%
GCAAGAACGGGGGGTCGGTG+GGG - chr8_4:38651077-38651096 Msa1325860:intron 70.0%
AACGGGGGGTCGGTGGGGAA+AGG - chr8_4:38651082-38651101 Msa1325860:intron 70.0%
!! GCCATTCTCGGTGCCGCCGG+TGG - chr8_4:38648415-38648434 Msa1325860:three_prime_UTR 75.0%
! CCCACCGGCGGCACCGAGAA+TGG + chr8_4:38648419-38648438 None:intergenic 75.0%
!! CTCGGTGCCGCCGGTGGGAT+CGG - chr8_4:38648421-38648440 Msa1325860:three_prime_UTR 75.0%
GGGCTGACCGATCCCACCGG+CGG + chr8_4:38648431-38648450 None:intergenic 75.0%
GGCTTTCTGGGCACGCCGGC+AGG + chr8_4:38649708-38649727 None:intergenic 75.0%
GCCGGCGTGCCCAGAAAGCC+TGG - chr8_4:38649708-38649727 Msa1325860:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 38648102 38652619 38648102 ID=Msa1325860;Name=Msa1325860
chr8_4 mRNA 38648102 38652619 38648102 ID=Msa1325860-mRNA-1;Parent=Msa1325860;Name=Msa1325860-mRNA-1;_AED=0.07;_eAED=0.07;_QI=214|1|1|1|1|1|7|525|343
chr8_4 exon 38648102 38648764 38648102 ID=Msa1325860-mRNA-1:exon:11748;Parent=Msa1325860-mRNA-1
chr8_4 exon 38648964 38649084 38648964 ID=Msa1325860-mRNA-1:exon:11747;Parent=Msa1325860-mRNA-1
chr8_4 exon 38649244 38649365 38649244 ID=Msa1325860-mRNA-1:exon:11746;Parent=Msa1325860-mRNA-1
chr8_4 exon 38649470 38649531 38649470 ID=Msa1325860-mRNA-1:exon:11745;Parent=Msa1325860-mRNA-1
chr8_4 exon 38649800 38649968 38649800 ID=Msa1325860-mRNA-1:exon:11744;Parent=Msa1325860-mRNA-1
chr8_4 exon 38650909 38651082 38650909 ID=Msa1325860-mRNA-1:exon:11743;Parent=Msa1325860-mRNA-1
chr8_4 exon 38652160 38652619 38652160 ID=Msa1325860-mRNA-1:exon:11742;Parent=Msa1325860-mRNA-1
chr8_4 five_prime_UTR 38652406 38652619 38652406 ID=Msa1325860-mRNA-1:five_prime_utr;Parent=Msa1325860-mRNA-1
chr8_4 CDS 38652160 38652405 38652160 ID=Msa1325860-mRNA-1:cds;Parent=Msa1325860-mRNA-1
chr8_4 CDS 38650909 38651082 38650909 ID=Msa1325860-mRNA-1:cds;Parent=Msa1325860-mRNA-1
chr8_4 CDS 38649800 38649968 38649800 ID=Msa1325860-mRNA-1:cds;Parent=Msa1325860-mRNA-1
chr8_4 CDS 38649470 38649531 38649470 ID=Msa1325860-mRNA-1:cds;Parent=Msa1325860-mRNA-1
chr8_4 CDS 38649244 38649365 38649244 ID=Msa1325860-mRNA-1:cds;Parent=Msa1325860-mRNA-1
chr8_4 CDS 38648964 38649084 38648964 ID=Msa1325860-mRNA-1:cds;Parent=Msa1325860-mRNA-1
chr8_4 CDS 38648627 38648764 38648627 ID=Msa1325860-mRNA-1:cds;Parent=Msa1325860-mRNA-1
chr8_4 three_prime_UTR 38648102 38648626 38648102 ID=Msa1325860-mRNA-1:three_prime_utr;Parent=Msa1325860-mRNA-1
Gene Sequence

>Msa1325860

ATGATGAGGCCGTCGATACTCAGATCCGTCAAGTCAGCCGTGTCCCGCAGCATAACCCGCCGTGGCTATGCCACCGAACCGGTTCCTGAACGCAAGGTGGCCATTCTCGGTGCCGCCGGTGGGATCGGTCAGCCCCTCTCTCTTCTCATGAAGCTCAACCCTCTCGTTTCAACCCTTTCTCTTTATGATATTGCTGGTACCCCTGGTGTTGCTGCCGATGTTAGCCACATCAACTCCAGATCTCAGGTAACTGGGTACGCAGGTGAAGATGAGCTTGGAAAAGCTTTGGAGGGTGCTGACGTTGTTATAATTCCTGCCGGCGTGCCCAGAAAGCCTGGAATGACTCGTGATGATCTTTTCAACATTAACGCTGGCATTGTTAAATCACTTGCCACTGCTATTTCTAAGTACTGCCCCCATGCTCTTGTTAACATGATAAGCAACCCTGTGAACTCAACTGTCCCCATTGCTGCTGAAGTTTTCAAGAAGGCAGGGACATACGACGAGAAGAGATTGTTTGGGGTTACAACTCTTGATGTAGTTAGGGCAAAAACTTTCTATGCTGGGAAAGCTAATGTTCCAGTTGCGGAGGTCAATGTACCTGTTATAGGAGGCCATGCAGGAGTTACTATTCTCCCACTATTTTCTCAGGCATCACCTCAAGCCAATCTGGATGATGATGTCATTAAGGCTCTAACTGCGAGGACCCAAGATGGAGGAACAGAGGTTGTGACTGCCAAGGCTGGAAAGGGTTCCGCAACTTTGTCAATGGCTTATGCTGGAGCCATATTTGCTGATGCTTGCCTCAAAGGTCTTAATGGAGTTCCAGATGTTGTTGAGTGCTCGTATGTGCAATCCAATCTCATTGCTGAACTTCCTTTCTTTGCTTCCAAGGTGAGGATTGGGAAGAATGGTGTAGAGGAAATTCTGGGCCTAGGTTCTCTCTCAGATTTTGAGAAACAAGGCCTTGAAAACCTCAAGTCTGAACTTAAGTCATCTATTGAGAAGGGAATCAAATTTGCCTCCCAGTAA
Protein sequence

>Msa1325860

MMRPSILRSVKSAVSRSITRRGYATEPVPERKVAILGAAGGIGQPLSLLMKLNPLVSTLSLYDIAGTPGVAADVSHINSRSQVTGYAGEDELGKALEGADVVIIPAGVPRKPGMTRDDLFNINAGIVKSLATAISKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRAKTFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQASPQANLDDDVIKALTARTQDGGTEVVTAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSYVQSNLIAELPFFASKVRIGKNGVEEILGLGSLSDFEKQGLENLKSELKSSIEKGIKFASQ*