AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1323870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323870 MtrunA17_Chr8g0356981 91.789 341 6 1 1 319 1 341 0.0 642
Msa1323870 MtrunA17_Chr2g0310111 72.973 333 67 2 10 319 16 348 3.51e-176 491
Msa1323870 MtrunA17_Chr2g0331311 58.112 339 117 4 3 316 5 343 8.84e-139 396
Msa1323870 MtrunA17_Chr7g0253651 57.407 324 112 5 18 315 21 344 9.86e-132 379
Msa1323870 MtrunA17_Chr2g0304231 54.303 337 130 3 2 314 7 343 2.70e-129 372
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323870 AT3G12740.1 69.512 328 77 2 15 319 23 350 1.70e-169 474
Msa1323870 AT1G54320.1 69.817 328 76 2 15 319 22 349 4.83e-168 471
Msa1323870 AT1G79450.1 64.526 327 93 2 15 318 22 348 2.74e-156 441
Msa1323870 AT1G16360.2 61.628 344 105 3 2 318 5 348 1.05e-155 440
Msa1323870 AT1G16360.1 63.522 318 93 2 24 318 17 334 1.76e-149 423
Msa1323870 AT1G16360.4 62.583 302 90 2 24 302 17 318 6.27e-138 394
Msa1323870 AT1G79450.2 64.599 274 74 2 68 318 8 281 6.17e-128 367
Msa1323870 AT5G46150.1 54.459 314 116 4 25 314 28 338 1.77e-120 350
Msa1323870 AT5G46150.2 54.459 314 116 4 25 314 28 338 1.77e-120 350
Msa1323870 AT5G46150.3 52.997 317 125 3 10 302 13 329 1.69e-118 344
Msa1323870 AT1G16360.3 61.413 184 70 1 24 206 17 200 7.20e-81 245
Msa1323870 AT1G16360.5 61.413 184 70 1 24 206 17 200 7.20e-81 245
Msa1323870 AT5G46150.4 57.609 184 76 2 25 206 28 211 1.29e-78 240

Find 88 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGTACCGTCGGTGATTC+TGG 0.266413 8_4:-32582769 None:intergenic
AAGGTTAATTCTTTCATTAT+TGG 0.272200 8_4:+32581077 Msa1323870:five_prime_UTR
AGTGATAGAGATCATAAATT+TGG 0.272931 8_4:+32583769 Msa1323870:CDS
CCCTCAATTGCTCATCATTT+CGG 0.279039 8_4:-32583579 None:intergenic
AGTAGAAATTTGGTGAGTTT+TGG 0.291368 8_4:+32585592 Msa1323870:three_prime_UTR
CTTCATATTTGTCATGGAAT+AGG 0.326806 8_4:+32585250 Msa1323870:CDS
CTAGCTGTGCATGATCTTCC+AGG 0.349382 8_4:+32585300 Msa1323870:three_prime_UTR
CAGCATGCGTACCGTCAAAT+TGG 0.350399 8_4:+32582494 Msa1323870:CDS
TCTATTTGTAGTAAGATCAT+TGG 0.358198 8_4:-32581147 None:intergenic
CTTTGAATGATGACAGGAAA+TGG 0.369180 8_4:-32580881 None:intergenic
GAGTGAAAATAGTAGAAATT+TGG 0.375881 8_4:+32585582 Msa1323870:three_prime_UTR
ACCATCGTATTCATTCCTAT+TGG 0.381424 8_4:+32582316 Msa1323870:CDS
GGATGAAGGTTTCGTGTGGC+GGG 0.385011 8_4:-32580859 None:intergenic
TTGAATTGGTGGTTCTGTTA+TGG 0.390155 8_4:+32581106 Msa1323870:exon
ATTATTGGATTGGATTGAAT+TGG 0.392862 8_4:+32581092 Msa1323870:five_prime_UTR
CTTTCATCAACCTGCTCAAC+CGG 0.393863 8_4:+32580910 Msa1323870:five_prime_UTR
CCATACAACTTCCTAAAAGT+TGG 0.399756 8_4:-32584246 None:intergenic
TAATTCTTTCATTATTGGAT+TGG 0.408761 8_4:+32581082 Msa1323870:five_prime_UTR
TGGAAAGATTGAGGTGGATC+TGG 0.409137 8_4:+32584266 Msa1323870:CDS
TCAAGAAGCACATCATTGTT+TGG 0.411534 8_4:+32585539 Msa1323870:three_prime_UTR
GGGATTGCTTATCTCTCTGT+TGG 0.413229 8_4:+32584408 Msa1323870:CDS
ACTTTATCTGTCCAATTTGA+CGG 0.415199 8_4:-32582505 None:intergenic
GTGGAAAGAATGACTTCCTT+GGG 0.417288 8_4:+32584388 Msa1323870:CDS
AGCAGGAGGATCTTATCGTT+TGG 0.422953 8_4:+32584205 Msa1323870:CDS
AGGCCTCCTGAGGGAAATCC+TGG 0.424298 8_4:-32585318 None:intergenic
GACCCTGAACGTGATGTAAA+TGG 0.428391 8_4:+32583634 Msa1323870:CDS
ATGAAGGTTTCGTGTGGCGG+GGG 0.429785 8_4:-32580857 None:intergenic
TACCTTGTGGTCTTATAGCT+TGG 0.435333 8_4:+32583668 Msa1323870:CDS
AGGTTGTTGAAATTGTTGAT+AGG 0.436935 8_4:+32582464 Msa1323870:intron
ATAAGTGAAGCAACTCCAAT+AGG 0.440672 8_4:-32582331 None:intergenic
GGTGGAAAGAATGACTTCCT+TGG 0.448097 8_4:+32584387 Msa1323870:CDS
ACCGCTTGTGGTGTAAGAAT+AGG 0.455359 8_4:-32582174 None:intergenic
ATTGCTTATCTCTCTGTTGG+AGG 0.456603 8_4:+32584411 Msa1323870:CDS
ACACCATTTACATCACGTTC+AGG 0.458429 8_4:-32583637 None:intergenic
TCTCTTTGTTATAGGCAACT+TGG 0.460443 8_4:+32585222 Msa1323870:intron
GCCGAAATGATGAGCAATTG+AGG 0.464516 8_4:+32583578 Msa1323870:CDS
GAGATCCTTCATATTTGTCA+TGG 0.476748 8_4:+32585244 Msa1323870:CDS
TCATGGAATAGGAACCCATC+AGG 0.477360 8_4:+32585261 Msa1323870:CDS
AGAAGGGTTACCGGTTGAGC+AGG 0.485476 8_4:-32580920 None:intergenic
GATGAAGGTTTCGTGTGGCG+GGG 0.489462 8_4:-32580858 None:intergenic
TTGTATTGTCAACTACTAGT+TGG 0.492500 8_4:+32584361 Msa1323870:CDS
ATTGAGGTGGATCTGGAGAA+AGG 0.496339 8_4:+32584273 Msa1323870:CDS
ATTGGATTGGATTGAATTGG+TGG 0.507211 8_4:+32581095 Msa1323870:five_prime_UTR
GATGAGCAATTGAGGGATGC+TGG 0.508544 8_4:+32583586 Msa1323870:CDS
AGCTGATAGTAAACATAGAT+AGG 0.508601 8_4:-32582734 None:intergenic
TGAACAAGAAAGAAATCTCA+TGG 0.508781 8_4:+32583743 Msa1323870:CDS
TTTCAGCTCAGTGCCCTGAT+GGG 0.513086 8_4:-32585275 None:intergenic
TCTTTGAAGCTCTTTGCAAA+AGG 0.516610 8_4:+32581058 Msa1323870:intron
GATGACAGGAAATGGGATGA+AGG 0.520778 8_4:-32580873 None:intergenic
CCGAAATGATGAGCAATTGA+GGG 0.522900 8_4:+32583579 Msa1323870:CDS
ACAAACATATTTACCGCTTG+TGG 0.523482 8_4:-32582186 None:intergenic
TCAACTACTAGTTGGCTTGG+TGG 0.523709 8_4:+32584369 Msa1323870:CDS
TATGAAACAGTTGAGTGAGC+AGG 0.525938 8_4:+32584188 Msa1323870:intron
AGAGAGAAAGAAACGGTCAC+CGG 0.527775 8_4:+32580831 Msa1323870:five_prime_UTR
AATTGACTTTGAATGATGAC+AGG 0.528004 8_4:-32580887 None:intergenic
GGGATGAAGGTTTCGTGTGG+CGG 0.528934 8_4:-32580860 None:intergenic
CTATTCCATGACAAATATGA+AGG 0.529494 8_4:-32585249 None:intergenic
TGAAATTGTTGATAGGTATG+AGG 0.531187 8_4:+32582471 Msa1323870:CDS
GAAGTTGTATGGAAAGATTG+AGG 0.531483 8_4:+32584257 Msa1323870:CDS
TTTGAATGATGACAGGAAAT+GGG 0.541915 8_4:-32580880 None:intergenic
GTTATGGCAACAACCAGCGT+TGG 0.544670 8_4:+32581122 Msa1323870:exon
TTGTCAACTACTAGTTGGCT+TGG 0.552516 8_4:+32584366 Msa1323870:CDS
GATCTTCCAGGATTTCCCTC+AGG 0.555644 8_4:+32585312 Msa1323870:three_prime_UTR
CACCATTTACATCACGTTCA+GGG 0.557158 8_4:-32583636 None:intergenic
GAAAGGTGATGAGATAAAAG+TGG 0.561470 8_4:+32584290 Msa1323870:CDS
CTTCCAGGATTTCCCTCAGG+AGG 0.564217 8_4:+32585315 Msa1323870:three_prime_UTR
GCCTATTCTTACACCACAAG+CGG 0.573542 8_4:+32582173 Msa1323870:CDS
GAGAGAAAGAGAGAAAGAAA+CGG 0.573676 8_4:+32580824 Msa1323870:five_prime_UTR
ATAAGACCACAAGGTACGAT+TGG 0.580186 8_4:-32583661 None:intergenic
TCTTCAGACTTAAACAGTAG+CGG 0.591471 8_4:+32585354 Msa1323870:three_prime_UTR
AGGATCTTATCGTTTGGATG+CGG 0.592427 8_4:+32584211 Msa1323870:CDS
CTCCAAGCTATAAGACCACA+AGG 0.620489 8_4:-32583670 None:intergenic
CTGAAGAATAATATTACACA+AGG 0.620911 8_4:-32585338 None:intergenic
GTTGTATGGAAAGATTGAGG+TGG 0.624167 8_4:+32584260 Msa1323870:CDS
CAGAGAGATAAGCAATCCCA+AGG 0.625244 8_4:-32584404 None:intergenic
CATGGAATAGGAACCCATCA+GGG 0.630665 8_4:+32585262 Msa1323870:CDS
ATATACAATAGTAAAAGCCA+TGG 0.632004 8_4:-32584451 None:intergenic
AAGATCATTGGATCCAACGC+TGG 0.632825 8_4:-32581135 None:intergenic
GAAACAGTTGAGTGAGCAGG+AGG 0.635104 8_4:+32584191 Msa1323870:intron
ATATTACACAAGGCCTCCTG+AGG 0.637549 8_4:-32585328 None:intergenic
GGAAAAGCAAACTCAACAAG+TGG 0.654434 8_4:+32583607 Msa1323870:CDS
GTAAGAATAGGCTTGCATGC+TGG 0.654457 8_4:-32582162 None:intergenic
TATTACACAAGGCCTCCTGA+GGG 0.665038 8_4:-32585327 None:intergenic
CTGCCAATAAAACTTGCACA+CGG 0.681677 8_4:+32582545 Msa1323870:CDS
AATGGGATGAAGGTTTCGTG+TGG 0.687757 8_4:-32580863 None:intergenic
TCCAATAGGAATGAATACGA+TGG 0.696774 8_4:-32582317 None:intergenic
ACTTCTACCAGAATCACCGA+CGG 0.729577 8_4:+32582762 Msa1323870:CDS
GGTGTGCCAATCGTACCTTG+TGG 0.829864 8_4:+32583655 Msa1323870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAAAAAAAAAAAAA+AGG + chr8_4:32583545-32583564 Msa1323870:intron 0.0%
!!! ATTTTTATGTTCATTTTTTA+AGG + chr8_4:32581307-32581326 Msa1323870:intron 10.0%
!!! TTTTTATGTTCATTTTTTAA+GGG + chr8_4:32581308-32581327 Msa1323870:intron 10.0%
!!! TTTATTATTACTTGTTTTTT+AGG + chr8_4:32581430-32581449 Msa1323870:intron 10.0%
!!! TTATTATTACTTGTTTTTTA+GGG + chr8_4:32581431-32581450 Msa1323870:intron 10.0%
!!! TTTTTTATGTTAATTTTTGA+AGG + chr8_4:32581574-32581593 Msa1323870:intron 10.0%
!!! TTTTTATGTTAATTTTTGAA+GGG + chr8_4:32581575-32581594 Msa1323870:intron 10.0%
!! AAAGATAAAATAAAGTTAAA+TGG + chr8_4:32581713-32581732 Msa1323870:intron 10.0%
!! TATTTGTATTTATATTCAAA+AGG - chr8_4:32583383-32583402 None:intergenic 10.0%
!! AAGTATATATTATAATTACA+GGG - chr8_4:32585086-32585105 None:intergenic 10.0%
!! AAAGTATATATTATAATTAC+AGG - chr8_4:32585087-32585106 None:intergenic 10.0%
!!! TTTTATGTTTTTTTGTGTTT+AGG - chr8_4:32580797-32580816 None:intergenic 15.0%
!! AAATTACAAAAAACAAAACA+TGG - chr8_4:32581261-32581280 None:intergenic 15.0%
!!! ATGTTTTGTTTTTTGTAATT+TGG + chr8_4:32581260-32581279 Msa1323870:intron 15.0%
!!! TTTTATGTTCATTTTTTAAG+GGG + chr8_4:32581309-32581328 Msa1323870:intron 15.0%
!! AAATTACAAAAAACAAAACA+TGG - chr8_4:32581261-32581280 None:intergenic 15.0%
!! GTAAACTTAAAAAAGTTAAA+TGG + chr8_4:32581735-32581754 Msa1323870:intron 15.0%
!! ATTTGAAAAAAAGGATTATT+TGG + chr8_4:32583063-32583082 Msa1323870:intron 15.0%
!!! TTTATATTCAAATTGACTTA+AGG - chr8_4:32584686-32584705 None:intergenic 15.0%
!!! AAGATAAAAAGAATTCTTTT+TGG - chr8_4:32585460-32585479 None:intergenic 15.0%
!! AAGGTTAATTCTTTCATTAT+TGG + chr8_4:32581077-32581096 Msa1323870:five_prime_UTR 20.0%
!! TAATTCTTTCATTATTGGAT+TGG + chr8_4:32581082-32581101 Msa1323870:five_prime_UTR 20.0%
!!! TTCTGATTACTTCTTTTTTA+GGG + chr8_4:32581212-32581231 Msa1323870:intron 20.0%
!!! TGTGTTTGTTATGTAAATTT+TGG + chr8_4:32581507-32581526 Msa1323870:intron 20.0%
!! AAATTAAGTTTCAAAAACCA+TGG - chr8_4:32581938-32581957 None:intergenic 20.0%
!! TGACAATAATTGTATGTATT+TGG + chr8_4:32582045-32582064 Msa1323870:intron 20.0%
!! GACAATAATTGTATGTATTT+GGG + chr8_4:32582046-32582065 Msa1323870:intron 20.0%
!!! TTTAGAATTCACTATTAACA+TGG + chr8_4:32582250-32582269 Msa1323870:intron 20.0%
!! AACAAATGATCATCAAAATT+TGG - chr8_4:32582670-32582689 None:intergenic 20.0%
!! TAAAAACTACTCTTATGAAT+AGG + chr8_4:32582691-32582710 Msa1323870:intron 20.0%
!! AACAAACAACATTTATTCAT+AGG - chr8_4:32582995-32583014 None:intergenic 20.0%
!! TCAAATTAGAAAACCATAAT+GGG - chr8_4:32583049-32583068 None:intergenic 20.0%
!! TTCAAATTAGAAAACCATAA+TGG - chr8_4:32583050-32583069 None:intergenic 20.0%
!!! GGTTTTCTAATTTGAAAAAA+AGG + chr8_4:32583054-32583073 Msa1323870:intron 20.0%
!! CTAAATTTCTTATAAGCTTA+TGG + chr8_4:32583884-32583903 Msa1323870:intron 20.0%
!! TGATTGATCTATTTAAAGAT+TGG - chr8_4:32584028-32584047 None:intergenic 20.0%
!! TGAGCTAATAAATATTATGT+TGG - chr8_4:32584662-32584681 None:intergenic 20.0%
!! AAGATGTAAGAAGAAAAAAA+AGG + chr8_4:32584808-32584827 Msa1323870:intron 20.0%
!!! ATTTCAACTGATTCATATAA+GGG - chr8_4:32585115-32585134 None:intergenic 20.0%
!!! AATTTCAACTGATTCATATA+AGG - chr8_4:32585116-32585135 None:intergenic 20.0%
!!! AGCAATAATTTTCATACATT+AGG + chr8_4:32585417-32585436 Msa1323870:three_prime_UTR 20.0%
!!! ATAAAAAGAATTCTTTTTGG+AGG - chr8_4:32585457-32585476 None:intergenic 20.0%
! CACAAAAAAACATAAAAGAG+AGG + chr8_4:32580800-32580819 Msa1323870:five_prime_UTR 25.0%
! AAGAAGAAAAAGAAGAAGAA+GGG - chr8_4:32580939-32580958 None:intergenic 25.0%
!! ATTATTGGATTGGATTGAAT+TGG + chr8_4:32581092-32581111 Msa1323870:five_prime_UTR 25.0%
! TCTATTTGTAGTAAGATCAT+TGG - chr8_4:32581150-32581169 None:intergenic 25.0%
! AAAGAAAAAAGCTTACACTT+GGG - chr8_4:32581188-32581207 None:intergenic 25.0%
! AAAAGAAAAAAGCTTACACT+TGG - chr8_4:32581189-32581208 None:intergenic 25.0%
!!! CTTCTGATTACTTCTTTTTT+AGG + chr8_4:32581211-32581230 Msa1323870:intron 25.0%
! GATGAAATAGAACTTCAAAA+AGG - chr8_4:32581351-32581370 None:intergenic 25.0%
! ATTAAGCAAATATTAGCTCA+TGG + chr8_4:32581385-32581404 Msa1323870:intron 25.0%
!!! ATAACTTGTTTACCTAAACA+AGG - chr8_4:32581630-32581649 None:intergenic 25.0%
! TTTAAGCAAATATTACTCCA+TGG + chr8_4:32581918-32581937 Msa1323870:intron 25.0%
! ATTTGACATGTTGAGTATTA+TGG + chr8_4:32581954-32581973 Msa1323870:intron 25.0%
! ATGAGGTTATGAATGATTTA+TGG + chr8_4:32582000-32582019 Msa1323870:intron 25.0%
! ATGGATTTAGACAATATGTT+TGG + chr8_4:32582019-32582038 Msa1323870:intron 25.0%
! AGTGAATTCTAAATGCATAT+AGG - chr8_4:32582243-32582262 None:intergenic 25.0%
!! TGGTATATTACTTTCTTTTC+AGG + chr8_4:32582270-32582289 Msa1323870:intron 25.0%
! TTATAACTGATCTTTGTATC+AGG + chr8_4:32582444-32582463 Msa1323870:intron 25.0%
! GAACAAGTAAAAAGAGAAAA+TGG - chr8_4:32582596-32582615 None:intergenic 25.0%
! AGTTAATGCAGAAATAACAT+AGG - chr8_4:32582618-32582637 None:intergenic 25.0%
!! TTTGGTATCATTTAAGTTTG+AGG + chr8_4:32583081-32583100 Msa1323870:intron 25.0%
!! AACATTTCGTGCATTTTAAA+TGG - chr8_4:32583190-32583209 None:intergenic 25.0%
! AGTGATAGAGATCATAAATT+TGG + chr8_4:32583769-32583788 Msa1323870:CDS 25.0%
!!! TACCATTCTGGAAATTTTTA+GGG - chr8_4:32583807-32583826 None:intergenic 25.0%
!!! TTACCATTCTGGAAATTTTT+AGG - chr8_4:32583808-32583827 None:intergenic 25.0%
!!! TACAACACATATAGTTTTAG+TGG + chr8_4:32584327-32584346 Msa1323870:CDS 25.0%
! ATATACAATAGTAAAAGCCA+TGG - chr8_4:32584454-32584473 None:intergenic 25.0%
!!! TTTTGAATGATGATGTTCAT+TGG + chr8_4:32584527-32584546 Msa1323870:intron 25.0%
! CTGAAGAATAATATTACACA+AGG - chr8_4:32585341-32585360 None:intergenic 25.0%
! GAGTGAAAATAGTAGAAATT+TGG + chr8_4:32585582-32585601 Msa1323870:three_prime_UTR 25.0%
TTTGAATGATGACAGGAAAT+GGG - chr8_4:32580883-32580902 None:intergenic 30.0%
! AATTGACTTTGAATGATGAC+AGG - chr8_4:32580890-32580909 None:intergenic 30.0%
GAAGAAGAAAAAGAAGAAGA+AGG - chr8_4:32580940-32580959 None:intergenic 30.0%
AGATAGAAAGAGAAAAAGAG+AGG - chr8_4:32580984-32581003 None:intergenic 30.0%
ACAAAAAACAAAACATGGCA+TGG - chr8_4:32581479-32581498 None:intergenic 30.0%
!! ATAAGACTTTAGCCTTGTTT+AGG + chr8_4:32581615-32581634 Msa1323870:intron 30.0%
ACTGTCTTCATAAGTTATCT+TGG + chr8_4:32581761-32581780 Msa1323870:intron 30.0%
AACAAAAGCCACAATTAGAT+TGG - chr8_4:32581900-32581919 None:intergenic 30.0%
AGGTTGTTGAAATTGTTGAT+AGG + chr8_4:32582464-32582483 Msa1323870:intron 30.0%
! TGAAATTGTTGATAGGTATG+AGG + chr8_4:32582471-32582490 Msa1323870:CDS 30.0%
ACTTTATCTGTCCAATTTGA+CGG - chr8_4:32582508-32582527 None:intergenic 30.0%
AAACTACTCTTATGAATAGG+TGG + chr8_4:32582694-32582713 Msa1323870:intron 30.0%
AGCTGATAGTAAACATAGAT+AGG - chr8_4:32582737-32582756 None:intergenic 30.0%
AATAAAAAGCAATGTACCGT+CGG - chr8_4:32582781-32582800 None:intergenic 30.0%
AAAGACATCCAAACAATTGA+GGG - chr8_4:32582915-32582934 None:intergenic 30.0%
! ATAATGGGAACACATGAAAA+CGG - chr8_4:32583034-32583053 None:intergenic 30.0%
TAATTTCCACTCTCATTGAT+TGG + chr8_4:32583452-32583471 Msa1323870:intron 30.0%
AAAAAACCAATCAATGAGAG+TGG - chr8_4:32583461-32583480 None:intergenic 30.0%
!!! CTCATTGATTGGTTTTTTAG+TGG + chr8_4:32583463-32583482 Msa1323870:intron 30.0%
TGAACAAGAAAGAAATCTCA+TGG + chr8_4:32583743-32583762 Msa1323870:CDS 30.0%
TTCCCTAAAAATTTCCAGAA+TGG + chr8_4:32583802-32583821 Msa1323870:intron 30.0%
TTCCAGAATGGTAATATTAC+AGG + chr8_4:32583814-32583833 Msa1323870:intron 30.0%
GAGTAAGTGAAAAAACTTAC+CGG - chr8_4:32583865-32583884 None:intergenic 30.0%
AAAAATGTGTGTGTCACATT+TGG - chr8_4:32584060-32584079 None:intergenic 30.0%
ACACTGGAAATCATAAAATC+AGG - chr8_4:32584086-32584105 None:intergenic 30.0%
TTGTATTGTCAACTACTAGT+TGG + chr8_4:32584361-32584380 Msa1323870:CDS 30.0%
! TTGTATATTTTGTCAAGCCA+AGG + chr8_4:32584466-32584485 Msa1323870:CDS 30.0%
AACTTTCCTTACTTCATACA+TGG + chr8_4:32584573-32584592 Msa1323870:intron 30.0%
ACTTTCCTTACTTCATACAT+GGG + chr8_4:32584574-32584593 Msa1323870:intron 30.0%
TTTGATCTCTGTCATATAGA+AGG + chr8_4:32584844-32584863 Msa1323870:intron 30.0%
AATTACACCGATGTAATACT+TGG + chr8_4:32584872-32584891 Msa1323870:intron 30.0%
ATTACACCGATGTAATACTT+GGG + chr8_4:32584873-32584892 Msa1323870:intron 30.0%
ATACTACCCAAGTATTACAT+CGG - chr8_4:32584882-32584901 None:intergenic 30.0%
GAACATGTAAGATGTTAATC+TGG - chr8_4:32585037-32585056 None:intergenic 30.0%
GTTGAAATTGTGAAGTTTAG+TGG + chr8_4:32585127-32585146 Msa1323870:intron 30.0%
! TCTGTATGTCTCTTTGTTAT+AGG + chr8_4:32585214-32585233 Msa1323870:intron 30.0%
CTATTCCATGACAAATATGA+AGG - chr8_4:32585252-32585271 None:intergenic 30.0%
CTTCATATTTGTCATGGAAT+AGG + chr8_4:32585250-32585269 Msa1323870:CDS 30.0%
!! AGTAGAAATTTGGTGAGTTT+TGG + chr8_4:32585592-32585611 Msa1323870:three_prime_UTR 30.0%
GAGAGAAAGAGAGAAAGAAA+CGG + chr8_4:32580824-32580843 Msa1323870:five_prime_UTR 35.0%
CTTTGAATGATGACAGGAAA+TGG - chr8_4:32580884-32580903 None:intergenic 35.0%
AAAAGAAGAAGAAGGGTTAC+CGG - chr8_4:32580932-32580951 None:intergenic 35.0%
!! TCTTTGAAGCTCTTTGCAAA+AGG + chr8_4:32581058-32581077 Msa1323870:intron 35.0%
! ATTGGATTGGATTGAATTGG+TGG + chr8_4:32581095-32581114 Msa1323870:five_prime_UTR 35.0%
! TTGAATTGGTGGTTCTGTTA+TGG + chr8_4:32581106-32581125 Msa1323870:exon 35.0%
TAGCTTACGAACAATGTCAT+AGG + chr8_4:32581809-32581828 Msa1323870:intron 35.0%
TAGTTGAAGAATGTGCTATG+AGG + chr8_4:32581983-32582002 Msa1323870:intron 35.0%
ACAAACATATTTACCGCTTG+TGG - chr8_4:32582189-32582208 None:intergenic 35.0%
ACCATCGTATTCATTCCTAT+TGG + chr8_4:32582316-32582335 Msa1323870:CDS 35.0%
TCCAATAGGAATGAATACGA+TGG - chr8_4:32582320-32582339 None:intergenic 35.0%
ATAAGTGAAGCAACTCCAAT+AGG - chr8_4:32582334-32582353 None:intergenic 35.0%
TTCACATTTACAATGCACAG+AGG + chr8_4:32582835-32582854 Msa1323870:intron 35.0%
CAAAGACATCCAAACAATTG+AGG - chr8_4:32582916-32582935 None:intergenic 35.0%
TAATGGGAACACATGAAAAC+GGG - chr8_4:32583033-32583052 None:intergenic 35.0%
! GTTTTCATGTGTTCCCATTA+TGG + chr8_4:32583033-32583052 Msa1323870:intron 35.0%
!! GTTGTCGATCTAGCTATTTT+TGG - chr8_4:32583142-32583161 None:intergenic 35.0%
AAGCAAACAATCAAAGACAG+TGG - chr8_4:32583425-32583444 None:intergenic 35.0%
CACCTGTAATATTACCATTC+TGG - chr8_4:32583819-32583838 None:intergenic 35.0%
CAGAATGGTAATATTACAGG+TGG + chr8_4:32583817-32583836 Msa1323870:intron 35.0%
AGATGAACAGTGAAATACAC+TGG - chr8_4:32584102-32584121 None:intergenic 35.0%
CCATACAACTTCCTAAAAGT+TGG - chr8_4:32584249-32584268 None:intergenic 35.0%
!! CCAACTTTTAGGAAGTTGTA+TGG + chr8_4:32584246-32584265 Msa1323870:CDS 35.0%
GAAGTTGTATGGAAAGATTG+AGG + chr8_4:32584257-32584276 Msa1323870:CDS 35.0%
GAAAGGTGATGAGATAAAAG+TGG + chr8_4:32584290-32584309 Msa1323870:CDS 35.0%
! AGTAAGCGATTTTCTTACCT+TGG - chr8_4:32584486-32584505 None:intergenic 35.0%
TGAAGTAAGGAAAGTTATCG+AGG - chr8_4:32584569-32584588 None:intergenic 35.0%
GAAAACCCATGTATGAAGTA+AGG - chr8_4:32584582-32584601 None:intergenic 35.0%
ATTCACTCTTTGCACACAAT+AGG + chr8_4:32584617-32584636 Msa1323870:intron 35.0%
! TCTCTTTGTTATAGGCAACT+TGG + chr8_4:32585222-32585241 Msa1323870:intron 35.0%
GAGATCCTTCATATTTGTCA+TGG + chr8_4:32585244-32585263 Msa1323870:CDS 35.0%
TCTTCAGACTTAAACAGTAG+CGG + chr8_4:32585354-32585373 Msa1323870:three_prime_UTR 35.0%
! TCAAGAAGCACATCATTGTT+TGG + chr8_4:32585539-32585558 Msa1323870:three_prime_UTR 35.0%
CAAACGAGCCAATCTAATTG+TGG + chr8_4:32581889-32581908 Msa1323870:intron 40.0%
CTGCCAATAAAACTTGCACA+CGG + chr8_4:32582545-32582564 Msa1323870:CDS 40.0%
!! TGTCCGTGTGCAAGTTTTAT+TGG - chr8_4:32582551-32582570 None:intergenic 40.0%
TTACAATGCACAGAGGAAAG+TGG + chr8_4:32582842-32582861 Msa1323870:intron 40.0%
! GAAAGTGGTTTGAAGCAACA+AGG + chr8_4:32582857-32582876 Msa1323870:intron 40.0%
AATGGGAACACATGAAAACG+GGG - chr8_4:32583032-32583051 None:intergenic 40.0%
CCCTCAATTGCTCATCATTT+CGG - chr8_4:32583582-32583601 None:intergenic 40.0%
CCGAAATGATGAGCAATTGA+GGG + chr8_4:32583579-32583598 Msa1323870:CDS 40.0%
GGAAAAGCAAACTCAACAAG+TGG + chr8_4:32583607-32583626 Msa1323870:CDS 40.0%
CACCATTTACATCACGTTCA+GGG - chr8_4:32583639-32583658 None:intergenic 40.0%
ACACCATTTACATCACGTTC+AGG - chr8_4:32583640-32583659 None:intergenic 40.0%
ATAAGACCACAAGGTACGAT+TGG - chr8_4:32583664-32583683 None:intergenic 40.0%
!! TACCTTGTGGTCTTATAGCT+TGG + chr8_4:32583668-32583687 Msa1323870:CDS 40.0%
! TCATCTCAACGAGAGTATAC+CGG + chr8_4:32583843-32583862 Msa1323870:intron 40.0%
TATGAAACAGTTGAGTGAGC+AGG + chr8_4:32584188-32584207 Msa1323870:intron 40.0%
AGGATCTTATCGTTTGGATG+CGG + chr8_4:32584211-32584230 Msa1323870:CDS 40.0%
GTTGTATGGAAAGATTGAGG+TGG + chr8_4:32584260-32584279 Msa1323870:CDS 40.0%
TTGTCAACTACTAGTTGGCT+TGG + chr8_4:32584366-32584385 Msa1323870:CDS 40.0%
GTGGAAAGAATGACTTCCTT+GGG + chr8_4:32584388-32584407 Msa1323870:CDS 40.0%
ATTGCTTATCTCTCTGTTGG+AGG + chr8_4:32584411-32584430 Msa1323870:CDS 40.0%
! TGGAGGATTGAGCTTCTTTT+TGG + chr8_4:32584428-32584447 Msa1323870:CDS 40.0%
!! ATTGAGCTTCTTTTTGGCCA+TGG + chr8_4:32584434-32584453 Msa1323870:CDS 40.0%
AGAGAGAAAGAAACGGTCAC+CGG + chr8_4:32580831-32580850 Msa1323870:five_prime_UTR 45.0%
AATGGGATGAAGGTTTCGTG+TGG - chr8_4:32580866-32580885 None:intergenic 45.0%
GATGACAGGAAATGGGATGA+AGG - chr8_4:32580876-32580895 None:intergenic 45.0%
CTTTCATCAACCTGCTCAAC+CGG + chr8_4:32580910-32580929 Msa1323870:five_prime_UTR 45.0%
AAGATCATTGGATCCAACGC+TGG - chr8_4:32581138-32581157 None:intergenic 45.0%
GTAAGAATAGGCTTGCATGC+TGG - chr8_4:32582165-32582184 None:intergenic 45.0%
GCCTATTCTTACACCACAAG+CGG + chr8_4:32582173-32582192 Msa1323870:CDS 45.0%
ACCGCTTGTGGTGTAAGAAT+AGG - chr8_4:32582177-32582196 None:intergenic 45.0%
ACTTCTACCAGAATCACCGA+CGG + chr8_4:32582762-32582781 Msa1323870:CDS 45.0%
GACATCCAAACAATTGAGGG+AGG - chr8_4:32582912-32582931 None:intergenic 45.0%
GCCGAAATGATGAGCAATTG+AGG + chr8_4:32583578-32583597 Msa1323870:CDS 45.0%
GACCCTGAACGTGATGTAAA+TGG + chr8_4:32583634-32583653 Msa1323870:CDS 45.0%
CTCCAAGCTATAAGACCACA+AGG - chr8_4:32583673-32583692 None:intergenic 45.0%
AGCAGGAGGATCTTATCGTT+TGG + chr8_4:32584205-32584224 Msa1323870:CDS 45.0%
TGGAAAGATTGAGGTGGATC+TGG + chr8_4:32584266-32584285 Msa1323870:CDS 45.0%
ATTGAGGTGGATCTGGAGAA+AGG + chr8_4:32584273-32584292 Msa1323870:CDS 45.0%
!! TCAACTACTAGTTGGCTTGG+TGG + chr8_4:32584369-32584388 Msa1323870:CDS 45.0%
GGTGGAAAGAATGACTTCCT+TGG + chr8_4:32584387-32584406 Msa1323870:CDS 45.0%
CAGAGAGATAAGCAATCCCA+AGG - chr8_4:32584407-32584426 None:intergenic 45.0%
GGGATTGCTTATCTCTCTGT+TGG + chr8_4:32584408-32584427 Msa1323870:CDS 45.0%
CACTCTGCTCGATAACTTAC+TGG + chr8_4:32584902-32584921 Msa1323870:intron 45.0%
TCATGGAATAGGAACCCATC+AGG + chr8_4:32585261-32585280 Msa1323870:CDS 45.0%
CATGGAATAGGAACCCATCA+GGG + chr8_4:32585262-32585281 Msa1323870:CDS 45.0%
TATTACACAAGGCCTCCTGA+GGG - chr8_4:32585330-32585349 None:intergenic 45.0%
ATATTACACAAGGCCTCCTG+AGG - chr8_4:32585331-32585350 None:intergenic 45.0%
!!! TAATTATAATATATACTTTT+CGG + chr8_4:32585088-32585107 Msa1323870:intron 5.0%
GTTATGGCAACAACCAGCGT+TGG + chr8_4:32581122-32581141 Msa1323870:exon 50.0%
CAGCATGCGTACCGTCAAAT+TGG + chr8_4:32582494-32582513 Msa1323870:CDS 50.0%
CAATGTACCGTCGGTGATTC+TGG - chr8_4:32582772-32582791 None:intergenic 50.0%
GCGTACCTCCCTCAATTGTT+TGG + chr8_4:32582904-32582923 Msa1323870:intron 50.0%
GATGAGCAATTGAGGGATGC+TGG + chr8_4:32583586-32583605 Msa1323870:CDS 50.0%
GAAACAGTTGAGTGAGCAGG+AGG + chr8_4:32584191-32584210 Msa1323870:intron 50.0%
! TATCGTTTGGATGCGGACTG+CGG + chr8_4:32584218-32584237 Msa1323870:CDS 50.0%
! CTGCGGCTTTGCCAACTTTT+AGG + chr8_4:32584235-32584254 Msa1323870:CDS 50.0%
TTTCAGCTCAGTGCCCTGAT+GGG - chr8_4:32585278-32585297 None:intergenic 50.0%
! TTTTCAGCTCAGTGCCCTGA+TGG - chr8_4:32585279-32585298 None:intergenic 50.0%
CTAGCTGTGCATGATCTTCC+AGG + chr8_4:32585300-32585319 Msa1323870:three_prime_UTR 50.0%
GATCTTCCAGGATTTCCCTC+AGG + chr8_4:32585312-32585331 Msa1323870:three_prime_UTR 50.0%
ATGAAGGTTTCGTGTGGCGG+GGG - chr8_4:32580860-32580879 None:intergenic 55.0%
GATGAAGGTTTCGTGTGGCG+GGG - chr8_4:32580861-32580880 None:intergenic 55.0%
GGATGAAGGTTTCGTGTGGC+GGG - chr8_4:32580862-32580881 None:intergenic 55.0%
GGGATGAAGGTTTCGTGTGG+CGG - chr8_4:32580863-32580882 None:intergenic 55.0%
! AGAAGGGTTACCGGTTGAGC+AGG - chr8_4:32580923-32580942 None:intergenic 55.0%
GCACACGGACACTGCATGTA+TGG + chr8_4:32582560-32582579 Msa1323870:intron 55.0%
GGTGTGCCAATCGTACCTTG+TGG + chr8_4:32583655-32583674 Msa1323870:CDS 55.0%
CTTCCAGGATTTCCCTCAGG+AGG + chr8_4:32585315-32585334 Msa1323870:three_prime_UTR 55.0%
AGGCCTCCTGAGGGAAATCC+TGG - chr8_4:32585321-32585340 None:intergenic 60.0%
! AAGGTTTCGTGTGGCGGGGG+CGG - chr8_4:32580857-32580876 None:intergenic 65.0%
! TTTCGTGTGGCGGGGGCGGC+CGG - chr8_4:32580853-32580872 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 32580744 32585624 32580744 ID=Msa1323870;Name=Msa1323870
chr8_4 mRNA 32580744 32585624 32580744 ID=Msa1323870-mRNA-1;Parent=Msa1323870;Name=Msa1323870-mRNA-1;_AED=0.09;_eAED=0.09;_QI=246|0.87|0.88|1|0.87|0.77|9|334|319
chr8_4 exon 32580744 32580931 32580744 ID=Msa1323870-mRNA-1:exon:10573;Parent=Msa1323870-mRNA-1
chr8_4 exon 32581067 32581191 32581067 ID=Msa1323870-mRNA-1:exon:10574;Parent=Msa1323870-mRNA-1
chr8_4 exon 32582136 32582194 32582136 ID=Msa1323870-mRNA-1:exon:10575;Parent=Msa1323870-mRNA-1
chr8_4 exon 32582292 32582366 32582292 ID=Msa1323870-mRNA-1:exon:10576;Parent=Msa1323870-mRNA-1
chr8_4 exon 32582466 32582576 32582466 ID=Msa1323870-mRNA-1:exon:10577;Parent=Msa1323870-mRNA-1
chr8_4 exon 32582713 32582783 32582713 ID=Msa1323870-mRNA-1:exon:10578;Parent=Msa1323870-mRNA-1
chr8_4 exon 32583567 32583798 32583567 ID=Msa1323870-mRNA-1:exon:10579;Parent=Msa1323870-mRNA-1
chr8_4 exon 32584198 32584487 32584198 ID=Msa1323870-mRNA-1:exon:10580;Parent=Msa1323870-mRNA-1
chr8_4 exon 32585236 32585624 32585236 ID=Msa1323870-mRNA-1:exon:10581;Parent=Msa1323870-mRNA-1
chr8_4 five_prime_UTR 32580744 32580931 32580744 ID=Msa1323870-mRNA-1:five_prime_utr;Parent=Msa1323870-mRNA-1
chr8_4 five_prime_UTR 32581067 32581124 32581067 ID=Msa1323870-mRNA-1:five_prime_utr;Parent=Msa1323870-mRNA-1
chr8_4 CDS 32581125 32581191 32581125 ID=Msa1323870-mRNA-1:cds;Parent=Msa1323870-mRNA-1
chr8_4 CDS 32582136 32582194 32582136 ID=Msa1323870-mRNA-1:cds;Parent=Msa1323870-mRNA-1
chr8_4 CDS 32582292 32582366 32582292 ID=Msa1323870-mRNA-1:cds;Parent=Msa1323870-mRNA-1
chr8_4 CDS 32582466 32582576 32582466 ID=Msa1323870-mRNA-1:cds;Parent=Msa1323870-mRNA-1
chr8_4 CDS 32582713 32582783 32582713 ID=Msa1323870-mRNA-1:cds;Parent=Msa1323870-mRNA-1
chr8_4 CDS 32583567 32583798 32583567 ID=Msa1323870-mRNA-1:cds;Parent=Msa1323870-mRNA-1
chr8_4 CDS 32584198 32584487 32584198 ID=Msa1323870-mRNA-1:cds;Parent=Msa1323870-mRNA-1
chr8_4 CDS 32585236 32585290 32585236 ID=Msa1323870-mRNA-1:cds;Parent=Msa1323870-mRNA-1
chr8_4 three_prime_UTR 32585291 32585624 32585291 ID=Msa1323870-mRNA-1:three_prime_utr;Parent=Msa1323870-mRNA-1
Gene Sequence

>Msa1323870

ATGGCAACAACCAGCGTTGGATCCAATGATCTTACTACAAATAGAAGACAAACAAAACGACCCAAGTACTCAAAGTTTACGCAACAAGAATTACCAGCATGCAAGCCTATTCTTACACCACAAGCGGTTATTTCAGCATTCTTGATTGTCACCATCGTATTCATTCCTATTGGAGTTGCTTCACTTATTGCTTCACGAGATGTTGTTGAAATTGTTGATAGGTATGAGGCAGCATGCGTACCGTCAAATTGGACAGATAAAGTAGCATACATTCAGAGTGCTGCCAATAAAACTTGCACACGGACACTGCATGTGGAGAAGCGTATGAAGTCTCCTATCTATGTTTACTATCAGCTTGACAACTTCTACCAGAATCACCGACGGTATGTGAAAAGCCGAAATGATGAGCAATTGAGGGATGCTGGAAAAGCAAACTCAACAAGTGGTTGTGACCCTGAACGTGATGTAAATGGTGTGCCAATCGTACCTTGTGGTCTTATAGCTTGGAGCATGTTCAATGATACATACAGCTTCTCACGCAACAACAATAATGTCGCAGTGAACAAGAAAGAAATCTCATGGAAAAGTGATAGAGATCATAAATTTGGAAGTGATTTGAGTGAGCAGGAGGATCTTATCGTTTGGATGCGGACTGCGGCTTTGCCAACTTTTAGGAAGTTGTATGGAAAGATTGAGGTGGATCTGGAGAAAGGTGATGAGATAAAAGTGGTATTGCAGAATCGCTACAACACATATAGTTTTAGTGGCAAGAAGAAGCTTGTATTGTCAACTACTAGTTGGCTTGGTGGAAAGAATGACTTCCTTGGGATTGCTTATCTCTCTGTTGGAGGATTGAGCTTCTTTTTGGCCATGGCTTTTACTATTGTATATTTTGTCAAGCCAAGGCAACTTGGAGATCCTTCATATTTGTCATGGAATAGGAACCCATCAGGGCACTGA

Protein sequence

>Msa1323870

MATTSVGSNDLTTNRRQTKRPKYSKFTQQELPACKPILTPQAVISAFLIVTIVFIPIGVASLIASRDVVEIVDRYEAACVPSNWTDKVAYIQSAANKTCTRTLHVEKRMKSPIYVYYQLDNFYQNHRRYVKSRNDEQLRDAGKANSTSGCDPERDVNGVPIVPCGLIAWSMFNDTYSFSRNNNNVAVNKKEISWKSDRDHKFGSDLSEQEDLIVWMRTAALPTFRKLYGKIEVDLEKGDEIKVVLQNRYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLSVGGLSFFLAMAFTIVYFVKPRQLGDPSYLSWNRNPSGH*