AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0330880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0330880 MtrunA17_Chr2g0313621 93.325 779 30 1 1 779 2 758 0.0 1445
Msa0330880 MtrunA17_Chr1g0156811 26.190 294 187 11 93 380 67 336 6.48e-18 87.8
Msa0330880 MtrunA17_Chr6g0484401 32.576 132 77 3 297 420 597 724 8.37e-16 82.0
Msa0330880 MtrunA17_Chr1g0199571 25.000 292 190 10 93 378 67 335 8.71e-16 81.3
Msa0330880 MtrunA17_Chr2g0290721 46.341 82 41 2 310 390 5 84 6.82e-14 75.9
Msa0330880 MtrunA17_Chr4g0064531 22.099 362 253 10 59 409 25 368 1.07e-13 74.7
Msa0330880 MtrunA17_Chr4g0037111 24.908 273 176 9 93 359 67 316 1.20e-13 73.2
Msa0330880 MtrunA17_Chr8g0351231 26.421 299 191 11 95 386 68 344 3.30e-13 72.8
Msa0330880 MtrunA17_Chr8g0391121 30.435 115 75 2 306 419 613 723 8.86e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0330880 AT3G14590.2 65.172 669 194 10 23 683 20 657 0.0 850
Msa0330880 AT1G53590.1 63.843 661 190 10 5 657 2 621 0.0 847
Msa0330880 AT3G14590.3 65.385 650 186 10 42 683 8 626 0.0 822
Msa0330880 AT3G14590.1 65.265 642 184 10 50 683 2 612 0.0 809
Msa0330880 AT3G14590.5 65.862 580 181 9 112 683 1 571 0.0 741
Msa0330880 AT3G14590.4 64.801 554 178 9 138 683 25 569 0.0 691
Msa0330880 AT1G05500.1 24.000 325 224 9 89 409 63 368 9.32e-17 84.7
Msa0330880 AT5G04220.3 22.393 326 212 11 93 413 5 294 2.04e-14 77.0
Msa0330880 AT1G03370.2 39.450 109 60 3 309 413 4 110 4.26e-14 77.0
Msa0330880 AT1G03370.1 39.450 109 60 3 309 413 4 110 5.04e-14 76.6
Msa0330880 AT5G04220.2 22.393 326 212 11 93 413 67 356 6.29e-14 75.9
Msa0330880 AT1G20080.2 23.247 271 179 9 93 357 67 314 8.40e-14 75.5
Msa0330880 AT1G20080.3 23.247 271 179 9 93 357 67 314 8.40e-14 75.5
Msa0330880 AT1G20080.4 23.247 271 179 9 93 357 67 314 8.40e-14 75.5
Msa0330880 AT1G20080.1 23.247 271 179 9 93 357 67 314 8.40e-14 75.5
Msa0330880 AT1G20080.5 23.247 271 179 9 93 357 67 314 8.40e-14 75.5
Msa0330880 AT3G18370.1 34.545 110 67 2 312 420 611 716 4.99e-13 73.6
Msa0330880 AT3G61050.2 23.794 311 207 11 95 398 68 355 1.65e-11 68.2
Msa0330880 AT3G61050.1 23.794 311 207 11 95 398 68 355 1.65e-11 68.2

Find 198 sgRNAs with CRISPR-Local

Find 441 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAATTCCTCTTGCCATTT+TGG 0.089795 2_4:+45984816 None:intergenic
TTCTGTTCAGCACCTATATT+TGG 0.118354 2_4:-45986342 Msa0330880:CDS
CTCACTGCTCACTGTGATTT+TGG 0.124370 2_4:-45986916 Msa0330880:CDS
ATAAACCCCGCTTGCGAAAA+AGG 0.139948 2_4:+45988009 None:intergenic
AAGAAATAGTGGCAGATAAA+AGG 0.165502 2_4:-45981321 Msa0330880:CDS
ACTTTAGTTCTTGCATCTTT+TGG 0.183440 2_4:+45981550 None:intergenic
AGCAGTGAGCTCTGCAATTT+TGG 0.197400 2_4:+45986930 None:intergenic
CTTCAATATCTATTGTTTCT+TGG 0.202407 2_4:+45982313 None:intergenic
ATCTGGAAAATCTCCAAAAT+TGG 0.203589 2_4:-45982232 Msa0330880:CDS
TCATAGTTATCTGCCAATTT+TGG 0.215229 2_4:+45982219 None:intergenic
AATAGATTGAGTTGAATAAT+TGG 0.225408 2_4:+45988190 None:intergenic
TTATATGTTATGTTATATTT+TGG 0.237466 2_4:-45981044 Msa0330880:three_prime_UTR
CACCTTTGATTACTGATATC+AGG 0.238503 2_4:-45986310 Msa0330880:CDS
GGTGATAAAGTGTTGCAATT+AGG 0.239091 2_4:+45988156 None:intergenic
ACTCATTAAATTTCACTTCT+TGG 0.241463 2_4:-45987897 Msa0330880:five_prime_UTR
AACCTCATTCACATCGGATT+TGG 0.244362 2_4:+45981489 None:intergenic
GGCTTTGATCTATCTTTATC+TGG 0.247822 2_4:-45987748 Msa0330880:intron
AACCACATTCACATCGGATT+TGG 0.255125 2_4:+45981450 None:intergenic
ATTTGGGGAACTTCGCTTCC+TGG 0.256187 2_4:+45982147 None:intergenic
ACCTCATTCACATCGGATTT+GGG 0.265677 2_4:+45981490 None:intergenic
GGCTGTAATTCAGCTGTATC+TGG 0.277405 2_4:-45982054 Msa0330880:CDS
TCCTTGACATCTCTCTTTGC+CGG 0.279545 2_4:+45981736 None:intergenic
GTGATAAAGTGTTGCAATTA+GGG 0.282411 2_4:+45988157 None:intergenic
ATTTCGTAGGAGTCGGAAAA+TGG 0.284800 2_4:-45981935 Msa0330880:CDS
TCTCTCTTTGCCGGGCTATC+AGG 0.298174 2_4:+45981745 None:intergenic
AGAAAACACTTTCTCCAAAA+TGG 0.300673 2_4:-45984830 Msa0330880:CDS
ACCACATTCACATCGGATTT+GGG 0.307145 2_4:+45981451 None:intergenic
AACATCAACAACCAGCATAT+TGG 0.311236 2_4:+45985317 None:intergenic
TTGACAGTCATCTGAAAATA+TGG 0.314441 2_4:+45985768 None:intergenic
TCCTTATGTGAAAGGTCATT+TGG 0.327934 2_4:-45984883 Msa0330880:CDS
CATGTAATAATCTGAGAAAA+TGG 0.333568 2_4:-45981189 Msa0330880:three_prime_UTR
CTTTCCGACTGGTAAGATTC+AGG 0.339765 2_4:-45981797 Msa0330880:CDS
TCCTTCTCATCCGTTTCATC+TGG 0.345735 2_4:-45982249 Msa0330880:CDS
CATCTCCACGTGATAACATT+AGG 0.350904 2_4:-45981879 Msa0330880:CDS
CGGAAAATGGACGATAATTC+AGG 0.353749 2_4:-45981922 Msa0330880:CDS
CTCATTAAATTTCACTTCTT+GGG 0.354194 2_4:-45987896 Msa0330880:five_prime_UTR
AAGTGGAAATGGTTTGGATA+TGG 0.360654 2_4:+45988069 None:intergenic
TCTAAGAACCATGGTATGAT+AGG 0.363312 2_4:+45986611 None:intergenic
AGTGAAACGGTGACGTATAA+AGG 0.363921 2_4:+45988217 None:intergenic
AAGATTAATTGAAGTGGAAA+TGG 0.364928 2_4:+45988058 None:intergenic
ACATCAACAACCAGCATATT+GGG 0.372605 2_4:+45985318 None:intergenic
TCAATGCAGGTTCTTGAGTT+AGG 0.375126 2_4:-45986174 Msa0330880:intron
ATGAAGCCATCAGATCTAAA+TGG 0.379168 2_4:-45985000 Msa0330880:intron
GGTCAGTAAATGCTTCTAAA+GGG 0.385901 2_4:-45981858 Msa0330880:CDS
ACAAGCCAGCCAGCAATTCC+TGG 0.385953 2_4:+45985708 None:intergenic
GATGGAAAGTCCTGCGCAAT+AGG 0.388349 2_4:+45981898 None:intergenic
ATTACATGTGTTTATATGTC+GGG 0.388980 2_4:+45981204 None:intergenic
AGAAATAGTGGCAGATAAAA+GGG 0.391851 2_4:-45981320 Msa0330880:CDS
CATTTCTATGATGACATCCT+TGG 0.399030 2_4:-45984732 Msa0330880:CDS
GGTTGGCGTGAAGTTTGTTA+TGG 0.403419 2_4:-45981836 Msa0330880:CDS
TAATTGAAGTGGAAATGGTT+TGG 0.403668 2_4:+45988063 None:intergenic
ATAGATTGAGTTGAATAATT+GGG 0.406354 2_4:+45988191 None:intergenic
GTTACAATCCCATGTTATGA+TGG 0.407165 2_4:+45984788 None:intergenic
AATAACAGTTCTTGATGATA+AGG 0.416703 2_4:-45984120 Msa0330880:CDS
AAACATATGGCCTATATGTA+TGG 0.422201 2_4:-45986663 Msa0330880:CDS
CAAATATCTTTACCTTGGTC+TGG 0.430139 2_4:+45985279 None:intergenic
ACAGAACTTCCAGGAATTGC+TGG 0.430424 2_4:-45985717 Msa0330880:CDS
CAAGGATGTCATCATAGAAA+TGG 0.432627 2_4:+45984733 None:intergenic
GTGGGTTTCTTCCCAAATAT+AGG 0.432753 2_4:+45986330 None:intergenic
GTTATGGATGATAACATTGC+TGG 0.435695 2_4:-45981820 Msa0330880:CDS
ATCTTATTGTTATAGAGCCT+TGG 0.437260 2_4:-45985086 Msa0330880:intron
CCTTATGTGAAAGGTCATTT+GGG 0.442994 2_4:-45984882 Msa0330880:CDS
GCAATCTGTTCCATACATAT+AGG 0.443303 2_4:+45986653 None:intergenic
TCTGTTCAGCACCTATATTT+GGG 0.444459 2_4:-45986341 Msa0330880:CDS
CTTGATGTGACAGAACTTCC+AGG 0.446186 2_4:-45985726 Msa0330880:CDS
AGGAAAGGCCTGCACAAAAT+CGG 0.446259 2_4:-45981964 Msa0330880:CDS
TCCAAACACCTGTCTTCTCT+TGG 0.447465 2_4:+45982178 None:intergenic
GCCAAGAGAAGACAGGTGTT+TGG 0.448255 2_4:-45982179 Msa0330880:CDS
AGGGAACCTAACGATATATC+TGG 0.450838 2_4:-45982075 Msa0330880:CDS
ACTGCTGCTGTCATTGTTCA+AGG 0.451580 2_4:+45982029 None:intergenic
ATTTGGGAGGATATAGATTC+AGG 0.451759 2_4:-45984866 Msa0330880:CDS
AAATTTCAAATATGAATTGT+CGG 0.454393 2_4:-45981116 Msa0330880:three_prime_UTR
GTCAACAAAGCTGCATATAA+CGG 0.454586 2_4:-45986076 Msa0330880:CDS
CCCAAATGACCTTTCACATA+AGG 0.456580 2_4:+45984882 None:intergenic
ATGGGATTGTAACAATGTTC+TGG 0.457201 2_4:-45984778 Msa0330880:CDS
TCAACAAAGCTGCATATAAC+GGG 0.457469 2_4:-45986075 Msa0330880:CDS
AACATTGCTGGCTTTCCGAC+TGG 0.458482 2_4:-45981808 Msa0330880:CDS
ATTTCTATGATGACATCCTT+GGG 0.460075 2_4:-45984731 Msa0330880:intron
GGATGAGAAGGAACCTTTGT+TGG 0.462679 2_4:+45982260 None:intergenic
TTAGACCTTTCAGGGGAGAA+TGG 0.464322 2_4:+45981379 None:intergenic
ATGTTCTTTCTCGTAAATCA+AGG 0.468368 2_4:-45981660 Msa0330880:CDS
ACCATGCAGTTGAAAACATA+TGG 0.471248 2_4:-45986676 Msa0330880:CDS
AGGTCAGTAAATGCTTCTAA+AGG 0.471451 2_4:-45981859 Msa0330880:CDS
TCGTATACGTGTATGCTTTG+TGG 0.474265 2_4:-45985796 Msa0330880:CDS
CCTTGACATCTCTCTTTGCC+GGG 0.475428 2_4:+45981737 None:intergenic
CTTGTTGACCACAGTGGTGT+TGG 0.476585 2_4:+45981414 None:intergenic
GAAAACAATCTAATCAAAGA+AGG 0.477365 2_4:-45987194 Msa0330880:CDS
AACATCGAATGAAAACTGTT+AGG 0.484264 2_4:-45981984 Msa0330880:CDS
AACTTCCAGGAATTGCTGGC+TGG 0.486710 2_4:-45985713 Msa0330880:CDS
ACAACACCAACAGCACTTAG+TGG 0.487584 2_4:+45980957 None:intergenic
GAATAGTAAAATATTGAAAG+TGG 0.490720 2_4:+45988123 None:intergenic
TTACAGCCAGATATATCGTT+AGG 0.491761 2_4:+45982069 None:intergenic
TATAGAGCCTTGGTTTAAAG+TGG 0.492151 2_4:-45985076 Msa0330880:intron
TTATCTTCAGCATTATCATC+GGG 0.493511 2_4:+45982006 None:intergenic
TTTCTGATTCTGAAACAGTT+CGG 0.494262 2_4:-45986706 Msa0330880:CDS
TGGAAATGGTTTGGATATGG+TGG 0.495869 2_4:+45988072 None:intergenic
AAATTTGCAGCCCAATATGC+TGG 0.498130 2_4:-45985328 Msa0330880:intron
CCCTCTGAATTTCTGTGTCG+AGG 0.498634 2_4:+45982094 None:intergenic
TAGTAACCATTTAGATCTGA+TGG 0.506393 2_4:+45984994 None:intergenic
TAAAATATTGAAAGTGGAGA+AGG 0.506941 2_4:+45988129 None:intergenic
TATTACATGTGTTTATATGT+CGG 0.514738 2_4:+45981203 None:intergenic
AGGGAGTGGTCCTGATAGCC+CGG 0.515922 2_4:-45981755 Msa0330880:CDS
TGACGTATAAAGGAAGTAAC+GGG 0.517211 2_4:+45988227 None:intergenic
TTTATCTTCAGCATTATCAT+CGG 0.518677 2_4:+45982005 None:intergenic
AACGTTATGTTACAAGGCTA+AGG 0.518852 2_4:-45987239 Msa0330880:CDS
CAAATGTGGGAGCCAAGAAA+AGG 0.519554 2_4:-45982129 Msa0330880:CDS
ATAACGGGAATGCATGTTGA+AGG 0.519584 2_4:-45986060 Msa0330880:CDS
ATGATGCAAAATTGAAACTT+CGG 0.522606 2_4:+45987842 None:intergenic
ACATGATAAAGAAGAAATAG+TGG 0.523972 2_4:-45981332 Msa0330880:CDS
AGTTCTTGATGATAAGGAAA+AGG 0.524058 2_4:-45984114 Msa0330880:intron
AAGTCAAAGATTAATTGAAG+TGG 0.526357 2_4:+45988052 None:intergenic
ACCTTTGATTACTGATATCA+GGG 0.529556 2_4:-45986309 Msa0330880:CDS
TCCAGATGAAACGGATGAGA+AGG 0.532280 2_4:+45982248 None:intergenic
TTTCTTGGCTCCCACATTTG+GGG 0.533313 2_4:+45982132 None:intergenic
CTAAGAACCATGGTATGATA+GGG 0.535211 2_4:+45986612 None:intergenic
TTCATGAACGTTATGTTACA+AGG 0.536010 2_4:-45987245 Msa0330880:CDS
CCCCAAATCCGATGTGAATG+AGG 0.537936 2_4:-45981491 Msa0330880:CDS
TTACAATCCCATGTTATGAT+GGG 0.539219 2_4:+45984789 None:intergenic
GGTAAGATTCAGGTAGAAAG+TGG 0.544585 2_4:-45981787 Msa0330880:CDS
TTGACCACAGTGGTGTTGGA+TGG 0.548005 2_4:+45981418 None:intergenic
GCCATTGCTCCATGTAACAT+TGG 0.548973 2_4:-45981517 Msa0330880:CDS
TCTTAGAGAAGTACAAACCT+TGG 0.551181 2_4:-45986595 Msa0330880:CDS
TGAGAAGGAACCTTTGTTGG+TGG 0.551198 2_4:+45982263 None:intergenic
ACACGTATACGACCAAGAAA+AGG 0.551448 2_4:+45985807 None:intergenic
CTAATGTTATCACGTGGAGA+TGG 0.553752 2_4:+45981880 None:intergenic
ACATGCATCAGTGTCGGTAT+CGG 0.561681 2_4:-45981148 Msa0330880:three_prime_UTR
GAAGCGAAGTTCCCCAAATG+TGG 0.562195 2_4:-45982143 Msa0330880:CDS
CTGATTCTGAAACAGTTCGG+TGG 0.563534 2_4:-45986703 Msa0330880:CDS
GTAAATGCTTCTAAAGGGGT+TGG 0.564255 2_4:-45981853 Msa0330880:CDS
CCTCATTCACATCGGATTTG+GGG 0.564660 2_4:+45981491 None:intergenic
AAAAGCCATTCTCCCCTGAA+AGG 0.566489 2_4:-45981384 Msa0330880:CDS
TAATTCAGGTCCTATTGCGC+AGG 0.567039 2_4:-45981908 Msa0330880:CDS
TTCTCGTCCACTTTAAACCA+AGG 0.567039 2_4:+45985069 None:intergenic
CTCATTCACATCGGATTTGG+GGG 0.567758 2_4:+45981492 None:intergenic
AGATTCATCACTAGATGAGT+CGG 0.568749 2_4:+45981588 None:intergenic
GAGTGAAGTTTCTCAAGGAA+TGG 0.569385 2_4:-45985830 Msa0330880:CDS
CCACATTCACATCGGATTTG+GGG 0.569763 2_4:+45981452 None:intergenic
AAATCGGTTCTGTATTTCGT+AGG 0.570323 2_4:-45981948 Msa0330880:CDS
CTGATATCAGTAATCAAAGG+TGG 0.571778 2_4:+45986311 None:intergenic
CACATTCACATCGGATTTGG+GGG 0.573608 2_4:+45981453 None:intergenic
ACCAATGTTACATGGAGCAA+TGG 0.574606 2_4:+45981516 None:intergenic
TCAGAATTCCCATCATAACA+TGG 0.575057 2_4:-45984797 Msa0330880:CDS
CCCCAAATCCGATGTGAATG+TGG 0.579254 2_4:-45981452 Msa0330880:CDS
CGCAAGCGGGGTTTATAACG+CGG 0.580141 2_4:-45988002 Msa0330880:five_prime_UTR
AGTGGATCAACGGAAGGGAG+TGG 0.580625 2_4:-45981769 Msa0330880:CDS
GTTCTGTATTTCGTAGGAGT+CGG 0.580650 2_4:-45981942 Msa0330880:CDS
CAGAATTCCCATCATAACAT+GGG 0.581021 2_4:-45984796 Msa0330880:CDS
GCAAATGAGACCACCAACAA+AGG 0.582885 2_4:-45982273 Msa0330880:CDS
GGTTATTGAAGTTCGTGACA+AGG 0.583121 2_4:-45984757 Msa0330880:CDS
AAGAACTAAAGTTGTTTCAG+AGG 0.584895 2_4:-45981539 Msa0330880:CDS
GTCAGTAAATGCTTCTAAAG+GGG 0.587217 2_4:-45981857 Msa0330880:CDS
AGACTTCACTCACCTCAACA+AGG 0.587867 2_4:+45985509 None:intergenic
GGTAGGAGTGAAGTTTCTCA+AGG 0.589146 2_4:-45985835 Msa0330880:CDS
TTGGTTTAAAGTGGACGAGA+AGG 0.592908 2_4:-45985067 Msa0330880:CDS
TCAGGTAGAAAGTGGATCAA+CGG 0.593031 2_4:-45981779 Msa0330880:CDS
AAGGGTCTGTTCAAACGCAA+TGG 0.593233 2_4:+45985528 None:intergenic
ATTGAAGGCCAAGAGAAGAC+AGG 0.595022 2_4:-45982186 Msa0330880:CDS
GGGAATGCATGTTGAAGGGA+AGG 0.595088 2_4:-45986055 Msa0330880:intron
AAAACAATCTAATCAAAGAA+GGG 0.596262 2_4:-45987193 Msa0330880:intron
GTAGAAAGTGGATCAACGGA+AGG 0.597270 2_4:-45981775 Msa0330880:CDS
CCCGGCAAAGAGAGATGTCA+AGG 0.599917 2_4:-45981737 Msa0330880:CDS
CAACACCACTGTGGTCAACA+AGG 0.602995 2_4:-45981413 Msa0330880:CDS
GAGCTGTGTTCGATATCTGT+CGG 0.603441 2_4:+45981226 None:intergenic
GCCTCGACACAGAAATTCAG+AGG 0.603945 2_4:-45982095 Msa0330880:CDS
GTGACGTATAAAGGAAGTAA+CGG 0.604470 2_4:+45988226 None:intergenic
ATTGAAAGTGGAGAAGGTAA+CGG 0.608609 2_4:+45988135 None:intergenic
CGAATGAAAACTGTTAGGAA+AGG 0.609904 2_4:-45981979 Msa0330880:CDS
CGTAAATCAAGGAAATCGAA+AGG 0.610607 2_4:-45981649 Msa0330880:CDS
ATGAATCATACAGCAGTCCA+AGG 0.611982 2_4:+45986578 None:intergenic
AATAATTGGGAAGAGTGAAA+CGG 0.612270 2_4:+45988204 None:intergenic
ATGACCTTTCACATAAGGAT+CGG 0.615098 2_4:+45984887 None:intergenic
TTAGCCGATCCTTATGTGAA+AGG 0.615463 2_4:-45984891 Msa0330880:CDS
TATGTGAAAGGTCATTTGGG+AGG 0.619001 2_4:-45984879 Msa0330880:CDS
TCTACCTGAATCTTACCAGT+CGG 0.620499 2_4:+45981793 None:intergenic
TAACGGGAATGCATGTTGAA+GGG 0.621171 2_4:-45986059 Msa0330880:CDS
TTTATGCCACTAAGTGCTGT+TGG 0.622596 2_4:-45980963 Msa0330880:three_prime_UTR
GGTGTTTGGATACATCAGCC+AGG 0.623254 2_4:-45982165 Msa0330880:CDS
ACCCTGATATCAGTAATCAA+AGG 0.627115 2_4:+45986308 None:intergenic
AAGCGAAGTTCCCCAAATGT+GGG 0.628739 2_4:-45982142 Msa0330880:CDS
CCAGTGTGATGATGACCACT+TGG 0.631960 2_4:-45986279 Msa0330880:intron
GGAAATGGTTTGGATATGGT+GGG 0.633766 2_4:+45988073 None:intergenic
AAAGAGAGATGTCAAGGACA+TGG 0.634532 2_4:-45981731 Msa0330880:CDS
ACTTTCTCCAAAATGGCAAG+AGG 0.641409 2_4:-45984823 Msa0330880:CDS
TGATATCAGTAATCAAAGGT+GGG 0.644175 2_4:+45986312 None:intergenic
TTGTACTTCTCTAAGAACCA+TGG 0.644582 2_4:+45986602 None:intergenic
GACTTCACTCACCTCAACAA+GGG 0.645139 2_4:+45985510 None:intergenic
GTAGCTACATGCATCAGTGT+CGG 0.657079 2_4:-45981154 Msa0330880:three_prime_UTR
GTTTGAACAGACCCTTGTTG+AGG 0.662889 2_4:-45985521 Msa0330880:intron
TAGAAAGTGGATCAACGGAA+GGG 0.663587 2_4:-45981774 Msa0330880:CDS
ACAGTCATCTGAAAATATGG+AGG 0.673844 2_4:+45985771 None:intergenic
CCAAGTGGTCATCATCACAC+TGG 0.674932 2_4:+45986279 None:intergenic
ATTGTGAACCTCATTCACAT+CGG 0.683265 2_4:+45981483 None:intergenic
AGGCTCCTTGTTGACCACAG+TGG 0.684496 2_4:+45981408 None:intergenic
ATTGTGAACCACATTCACAT+CGG 0.691176 2_4:+45981444 None:intergenic
CCTCGACACAGAAATTCAGA+GGG 0.702383 2_4:-45982094 Msa0330880:CDS
AAATTTGTATCACCAGACCA+AGG 0.724755 2_4:-45985291 Msa0330880:intron
ACTGACCTAATGTTATCACG+TGG 0.727696 2_4:+45981874 None:intergenic
TGTGCCATCCAACACCACTG+TGG 0.765001 2_4:-45981422 Msa0330880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGCTTTTTTTTTTTTTTTTT+TGG - chr2_4:45981506-45981525 Msa0330880:CDS 10.0%
!!! TTTTTTTTTTTTTTTTGGTT+TGG - chr2_4:45981511-45981530 Msa0330880:CDS 10.0%
!!! TTTTTTGTCTTATTTATAAA+GGG - chr2_4:45981763-45981782 Msa0330880:CDS 10.0%
!!! TTTATATATTTTACATAACT+TGG - chr2_4:45983665-45983684 Msa0330880:intron 10.0%
!!! ATTTAAAGATTTGTTTAATA+AGG + chr2_4:45983944-45983963 None:intergenic 10.0%
!!! TTATATGTTATGTTATATTT+TGG - chr2_4:45988077-45988096 Msa0330880:five_prime_UTR 10.0%
!! TGATATTTAATCAAAAAACA+CGG + chr2_4:45981150-45981169 None:intergenic 15.0%
!!! GTTTTTTGTCTTATTTATAA+AGG - chr2_4:45981762-45981781 Msa0330880:CDS 15.0%
!! TGAACAATTAAAAATATAAC+AGG + chr2_4:45983774-45983793 None:intergenic 15.0%
!! AACAAATTATAGTATATTTC+AGG - chr2_4:45984206-45984225 Msa0330880:CDS 15.0%
!! AAAGCAAATGTATATTAAAA+AGG + chr2_4:45984647-45984666 None:intergenic 15.0%
!! TTTGTTAGTATAATGTTTAT+AGG + chr2_4:45985683-45985702 None:intergenic 15.0%
!!! AAGTTTATTTTAGATATCAT+CGG - chr2_4:45985708-45985727 Msa0330880:intron 15.0%
!! AAAAATAAAATATATGTAGC+TGG - chr2_4:45985749-45985768 Msa0330880:CDS 15.0%
!! ATTTATTATTATGGTCAATA+TGG + chr2_4:45985817-45985836 None:intergenic 15.0%
!! TATTCACAATGAAAATAAAA+TGG - chr2_4:45986615-45986634 Msa0330880:CDS 15.0%
!! AAATTTCAAATATGAATTGT+CGG - chr2_4:45988005-45988024 Msa0330880:five_prime_UTR 15.0%
!!! ATAGATTGAGTTGAATAATT+GGG + chr2_4:45980933-45980952 None:intergenic 20.0%
!!! AATAGATTGAGTTGAATAAT+TGG + chr2_4:45980934-45980953 None:intergenic 20.0%
!! GAATAGTAAAATATTGAAAG+TGG + chr2_4:45981001-45981020 None:intergenic 20.0%
!!! TTCTTCAGTTTTTGTTATAA+TGG - chr2_4:45981250-45981269 Msa0330880:three_prime_UTR 20.0%
!! AAAACAATCTAATCAAAGAA+GGG - chr2_4:45981928-45981947 Msa0330880:CDS 20.0%
!!! ATAAGGTTTCTATTGATTAA+AGG - chr2_4:45982072-45982091 Msa0330880:CDS 20.0%
!! AATATATGAAAGGAACAAAA+AGG + chr2_4:45982661-45982680 None:intergenic 20.0%
!! TTTGTTCCTTTCATATATTA+TGG - chr2_4:45982662-45982681 Msa0330880:intron 20.0%
!! AAGAAACCATAATATATGAA+AGG + chr2_4:45982671-45982690 None:intergenic 20.0%
!!! AAATATTCTTTTGCTGATTA+AGG - chr2_4:45983143-45983162 Msa0330880:intron 20.0%
!!! ATTTTTTTTTCTATAGGTCT+TGG - chr2_4:45983265-45983284 Msa0330880:intron 20.0%
!!! TCAATGACTAATGATTTTAA+CGG + chr2_4:45983888-45983907 None:intergenic 20.0%
!! CTCTATAACAATAAGATTTA+TGG + chr2_4:45984032-45984051 None:intergenic 20.0%
!!! AATATATTTTCACTAGATGT+CGG - chr2_4:45984591-45984610 Msa0330880:intron 20.0%
!! ATATACAAGTTTCACATTAT+TGG + chr2_4:45985086-45985105 None:intergenic 20.0%
!! AATACAATATAGAAATAGGA+GGG + chr2_4:45985186-45985205 None:intergenic 20.0%
!! ATATTATAACTTCTAGATTC+AGG - chr2_4:45985341-45985360 Msa0330880:intron 20.0%
!!! TGATATTCTAAGATATTGTT+CGG + chr2_4:45986149-45986168 None:intergenic 20.0%
!! TCAAAATCAAAAGAAAAGAA+AGG - chr2_4:45986242-45986261 Msa0330880:intron 20.0%
!!! TCTTTTTGTTTCTGAAAATT+GGG + chr2_4:45986303-45986322 None:intergenic 20.0%
!!! TTCTTTTTGTTTCTGAAAAT+TGG + chr2_4:45986304-45986323 None:intergenic 20.0%
!!! CAATTTTGAATTATGTTTAC+AGG - chr2_4:45986766-45986785 Msa0330880:intron 20.0%
!! TATTACATGTGTTTATATGT+CGG + chr2_4:45987921-45987940 None:intergenic 20.0%
! TAAAATATTGAAAGTGGAGA+AGG + chr2_4:45980995-45981014 None:intergenic 25.0%
! AAGATTAATTGAAGTGGAAA+TGG + chr2_4:45981066-45981085 None:intergenic 25.0%
! AAGTCAAAGATTAATTGAAG+TGG + chr2_4:45981072-45981091 None:intergenic 25.0%
! ACTCATTAAATTTCACTTCT+TGG - chr2_4:45981224-45981243 Msa0330880:three_prime_UTR 25.0%
! CTCATTAAATTTCACTTCTT+GGG - chr2_4:45981225-45981244 Msa0330880:three_prime_UTR 25.0%
! ATGATGCAAAATTGAAACTT+CGG + chr2_4:45981282-45981301 None:intergenic 25.0%
!!! TATGCTATGCTTTTTGATTT+TGG - chr2_4:45981453-45981472 Msa0330880:CDS 25.0%
! TTATAAAGGGTAAAGAGAAA+AGG - chr2_4:45981776-45981795 Msa0330880:CDS 25.0%
! TATAAAGGGTAAAGAGAAAA+GGG - chr2_4:45981777-45981796 Msa0330880:CDS 25.0%
!!! TTTGTTCTTTTTCATTGGAA+AGG - chr2_4:45981853-45981872 Msa0330880:CDS 25.0%
! GAAAACAATCTAATCAAAGA+AGG - chr2_4:45981927-45981946 Msa0330880:CDS 25.0%
! ATAAAACACATGAAAAGGAA+GGG + chr2_4:45982043-45982062 None:intergenic 25.0%
! AATAAAACACATGAAAAGGA+AGG + chr2_4:45982044-45982063 None:intergenic 25.0%
! AAGCAATAAAACACATGAAA+AGG + chr2_4:45982048-45982067 None:intergenic 25.0%
!!! TGTTTTATTGCTTGTCAATA+AGG - chr2_4:45982055-45982074 Msa0330880:CDS 25.0%
!! ATTTACTGATATAACTTGCA+TGG - chr2_4:45982365-45982384 Msa0330880:intron 25.0%
! AAGTACCTAAAATTCAAGAA+AGG + chr2_4:45982397-45982416 None:intergenic 25.0%
! GAAAATGTTTGAACTTCATA+TGG + chr2_4:45982607-45982626 None:intergenic 25.0%
! TGTGAAACTAAGAAAAAGAT+TGG - chr2_4:45983012-45983031 Msa0330880:intron 25.0%
! GTGAAACTAAGAAAAAGATT+GGG - chr2_4:45983013-45983032 Msa0330880:intron 25.0%
!!! TCAAACCTATTTTTACACAT+GGG - chr2_4:45983372-45983391 Msa0330880:intron 25.0%
! AAATTACTTAATTCGAGAGA+AGG + chr2_4:45983531-45983550 None:intergenic 25.0%
! AATCATTAGTCATTGAACAA+AGG - chr2_4:45983892-45983911 Msa0330880:intron 25.0%
! TTTAATAAGGATTCTAGTGA+GGG + chr2_4:45983931-45983950 None:intergenic 25.0%
! AAAAATATCATCACAGAGAA+AGG + chr2_4:45984155-45984174 None:intergenic 25.0%
!!! TGGTTTTTAGTATAGTTCAA+CGG - chr2_4:45984451-45984470 Msa0330880:intron 25.0%
!!! ATGTTGTTTTACACTAACAT+TGG + chr2_4:45984481-45984500 None:intergenic 25.0%
!! TGTGAACATCAATGATTTTA+GGG - chr2_4:45984914-45984933 Msa0330880:intron 25.0%
!! AATAACAGTTCTTGATGATA+AGG - chr2_4:45985001-45985020 Msa0330880:CDS 25.0%
! GAATGAATATAATTGAGGTA+AGG + chr2_4:45985050-45985069 None:intergenic 25.0%
! GAATACAATATAGAAATAGG+AGG + chr2_4:45985187-45985206 None:intergenic 25.0%
! GGAGAATACAATATAGAAAT+AGG + chr2_4:45985190-45985209 None:intergenic 25.0%
! TATTATGTGAAAGTTGTAGA+TGG + chr2_4:45985238-45985257 None:intergenic 25.0%
!!! TTTTATTGGTTGGGAATTAA+GGG + chr2_4:45985412-45985431 None:intergenic 25.0%
!!! TTGTGTTTGTTTTATTGGTT+GGG + chr2_4:45985421-45985440 None:intergenic 25.0%
!!! GATTGTTGTGTTTGTTTTAT+TGG + chr2_4:45985426-45985445 None:intergenic 25.0%
!! AAAAACAAAATCACAGCTTT+TGG + chr2_4:45985496-45985515 None:intergenic 25.0%
! AAACAATGTACCTGTTTAAT+TGG + chr2_4:45986185-45986204 None:intergenic 25.0%
! AACAACAGATCAAATAACAA+AGG + chr2_4:45986734-45986753 None:intergenic 25.0%
!! CTTCAATATCTATTGTTTCT+TGG + chr2_4:45986811-45986830 None:intergenic 25.0%
! TATGAGCCAATAAAAATTGA+AGG - chr2_4:45986920-45986939 Msa0330880:CDS 25.0%
! TTTATCTTCAGCATTATCAT+CGG + chr2_4:45987119-45987138 None:intergenic 25.0%
!!! TTTTTTCATTAGACCTTTCA+GGG + chr2_4:45987753-45987772 None:intergenic 25.0%
!!! ATTTTTTCATTAGACCTTTC+AGG + chr2_4:45987754-45987773 None:intergenic 25.0%
! ACATGATAAAGAAGAAATAG+TGG - chr2_4:45987789-45987808 Msa0330880:CDS 25.0%
! ATTACATGTGTTTATATGTC+GGG + chr2_4:45987920-45987939 None:intergenic 25.0%
! CATGTAATAATCTGAGAAAA+TGG - chr2_4:45987932-45987951 Msa0330880:five_prime_UTR 25.0%
AATAATTGGGAAGAGTGAAA+CGG + chr2_4:45980920-45980939 None:intergenic 30.0%
!! GTGATAAAGTGTTGCAATTA+GGG + chr2_4:45980967-45980986 None:intergenic 30.0%
TAATTGAAGTGGAAATGGTT+TGG + chr2_4:45981061-45981080 None:intergenic 30.0%
!!! GAATCGTTTTGATTTCTCTA+TGG - chr2_4:45981306-45981325 Msa0330880:CDS 30.0%
!!! TCATGCTGCTTTTTATTTTG+TGG - chr2_4:45981352-45981371 Msa0330880:CDS 30.0%
!! GGTTTTTGCTTTTGAACTTT+TGG - chr2_4:45981414-45981433 Msa0330880:CDS 30.0%
!! TTTGGTTTGGATTCATTAGT+TGG - chr2_4:45981524-45981543 Msa0330880:CDS 30.0%
!! ATTCATTCGAGTTCGATTTT+TGG + chr2_4:45981652-45981671 None:intergenic 30.0%
!!! ATTAGTTGGTGGTTTTGAAA+AGG - chr2_4:45981670-45981689 Msa0330880:CDS 30.0%
TAGCCAAAAAAGGAAAGAAA+AGG - chr2_4:45981803-45981822 Msa0330880:CDS 30.0%
AGCCAAAAAAGGAAAGAAAA+GGG - chr2_4:45981804-45981823 Msa0330880:CDS 30.0%
! TACCCTTTTCTTTCCTTTTT+TGG + chr2_4:45981809-45981828 None:intergenic 30.0%
!! CTGACTTTGTTCTTTTTCAT+TGG - chr2_4:45981848-45981867 Msa0330880:CDS 30.0%
TTCATGAACGTTATGTTACA+AGG - chr2_4:45981876-45981895 Msa0330880:CDS 30.0%
AAATAGAATCTGAACTTGAG+TGG - chr2_4:45981987-45982006 Msa0330880:CDS 30.0%
TAAAACACATGAAAAGGAAG+GGG + chr2_4:45982042-45982061 None:intergenic 30.0%
TTAGAACATGTTTGCATTCA+CGG + chr2_4:45982239-45982258 None:intergenic 30.0%
ATCATTGTCTTGAGAGTTAT+TGG - chr2_4:45982303-45982322 Msa0330880:CDS 30.0%
TCATTGTCTTGAGAGTTATT+GGG - chr2_4:45982304-45982323 Msa0330880:CDS 30.0%
! GATGACCTTTCTTGAATTTT+AGG - chr2_4:45982389-45982408 Msa0330880:intron 30.0%
!! TTTCTGATTCTGAAACAGTT+CGG - chr2_4:45982415-45982434 Msa0330880:intron 30.0%
AAACATATGGCCTATATGTA+TGG - chr2_4:45982458-45982477 Msa0330880:intron 30.0%
CTGTCAGATAAATAACTGAA+AGG + chr2_4:45982572-45982591 None:intergenic 30.0%
TGAAAGGAACAAAAAGGAAA+AGG + chr2_4:45982655-45982674 None:intergenic 30.0%
CTGATCATACACAAAATCAA+AGG + chr2_4:45982722-45982741 None:intergenic 30.0%
TGATATCAGTAATCAAAGGT+GGG + chr2_4:45982812-45982831 None:intergenic 30.0%
ACCTTTGATTACTGATATCA+GGG - chr2_4:45982812-45982831 Msa0330880:intron 30.0%
TAAGAATGTTACATACCAAG+TGG + chr2_4:45982860-45982879 None:intergenic 30.0%
ATGTAACATTCTTAAGCAGA+AGG - chr2_4:45982866-45982885 Msa0330880:intron 30.0%
! GTTAGGAATGAATTTTCTCA+CGG - chr2_4:45982964-45982983 Msa0330880:intron 30.0%
! TTAGGAATGAATTTTCTCAC+GGG - chr2_4:45982965-45982984 Msa0330880:intron 30.0%
!! ATTCTTTTGCTGATTAAGGT+CGG - chr2_4:45983147-45983166 Msa0330880:intron 30.0%
!!! TTTTTTCTATAGGTCTTGGT+AGG - chr2_4:45983269-45983288 Msa0330880:intron 30.0%
TTGACAGTCATCTGAAAATA+TGG + chr2_4:45983356-45983375 None:intergenic 30.0%
!!! GTCAAACCTATTTTTACACA+TGG - chr2_4:45983371-45983390 Msa0330880:intron 30.0%
CATGACAAATATCTTTACCT+TGG + chr2_4:45983850-45983869 None:intergenic 30.0%
GTTTAATAAGGATTCTAGTG+AGG + chr2_4:45983932-45983951 None:intergenic 30.0%
GTAACAATTATGTCAAGCAT+AGG + chr2_4:45983982-45984001 None:intergenic 30.0%
ATCTTATTGTTATAGAGCCT+TGG - chr2_4:45984035-45984054 Msa0330880:intron 30.0%
TGCAAAAATCGAAATTGTTG+AGG - chr2_4:45984090-45984109 Msa0330880:intron 30.0%
TAGTAACCATTTAGATCTGA+TGG + chr2_4:45984130-45984149 None:intergenic 30.0%
AGAAAACACTTTCTCCAAAA+TGG - chr2_4:45984291-45984310 Msa0330880:intron 30.0%
TTACAATCCCATGTTATGAT+GGG + chr2_4:45984335-45984354 None:intergenic 30.0%
ATTTCTATGATGACATCCTT+GGG - chr2_4:45984390-45984409 Msa0330880:intron 30.0%
ACTATACTAAAAACCACATG+AGG + chr2_4:45984447-45984466 None:intergenic 30.0%
GAAACATGATAGTTTCTCAT+TGG + chr2_4:45984515-45984534 None:intergenic 30.0%
TTAAACTACCTGTACAATAG+TGG - chr2_4:45984553-45984572 Msa0330880:intron 30.0%
TAAACTACCTGTACAATAGT+GGG - chr2_4:45984554-45984573 Msa0330880:intron 30.0%
CTTCATGATAATAGCAGAAA+AGG + chr2_4:45984720-45984739 None:intergenic 30.0%
CTTCCAATTATTCAATCACT+GGG - chr2_4:45984848-45984867 Msa0330880:CDS 30.0%
AAACCCAGTGATTGAATAAT+TGG + chr2_4:45984854-45984873 None:intergenic 30.0%
! CTGTGAACATCAATGATTTT+AGG - chr2_4:45984913-45984932 Msa0330880:intron 30.0%
!! AACATCAATGATTTTAGGGA+CGG - chr2_4:45984918-45984937 Msa0330880:intron 30.0%
CCACTACAGAAAGTAAAAAT+GGG - chr2_4:45984963-45984982 Msa0330880:intron 30.0%
CACTACAGAAAGTAAAAATG+GGG - chr2_4:45984964-45984983 Msa0330880:intron 30.0%
! AGTTCTTGATGATAAGGAAA+AGG - chr2_4:45985007-45985026 Msa0330880:CDS 30.0%
AATATAATTGAGGTAAGGTG+GGG + chr2_4:45985045-45985064 None:intergenic 30.0%
GAATATAATTGAGGTAAGGT+GGG + chr2_4:45985046-45985065 None:intergenic 30.0%
TGAATATAATTGAGGTAAGG+TGG + chr2_4:45985047-45985066 None:intergenic 30.0%
CATTATTGGATAATATTGCG+AGG + chr2_4:45985072-45985091 None:intergenic 30.0%
ATGTTGAGGAATCAACATAT+AGG + chr2_4:45985125-45985144 None:intergenic 30.0%
! ATCTGGAAGTGTATAGAAAA+GGG + chr2_4:45985211-45985230 None:intergenic 30.0%
! AATCTGGAAGTGTATAGAAA+AGG + chr2_4:45985212-45985231 None:intergenic 30.0%
AAGTTGTAGATGGTATAATC+TGG + chr2_4:45985228-45985247 None:intergenic 30.0%
TGAGTGTTAAAATGTGTGTT+CGG + chr2_4:45985382-45985401 None:intergenic 30.0%
!! GTTTTATTGGTTGGGAATTA+AGG + chr2_4:45985413-45985432 None:intergenic 30.0%
!!! GTTGTGTTTGTTTTATTGGT+TGG + chr2_4:45985422-45985441 None:intergenic 30.0%
ATAAAGATCTCCAAAACGAT+TGG + chr2_4:45985572-45985591 None:intergenic 30.0%
GGAGATCTTTATGTATTAAC+AGG - chr2_4:45985580-45985599 Msa0330880:intron 30.0%
!! CAATGCAACAATGTTTTTGA+AGG + chr2_4:45985628-45985647 None:intergenic 30.0%
GTCAATTTCATTCTTGACAA+CGG + chr2_4:45985940-45985959 None:intergenic 30.0%
GAATTAACACAAGTCTTACT+TGG + chr2_4:45986023-45986042 None:intergenic 30.0%
GAAAAGAAAGGAGAATAAAG+AGG - chr2_4:45986254-45986273 Msa0330880:intron 30.0%
ATCTGGAAAATCTCCAAAAT+TGG - chr2_4:45986889-45986908 Msa0330880:intron 30.0%
! TCATAGTTATCTGCCAATTT+TGG + chr2_4:45986905-45986924 None:intergenic 30.0%
!! TCTTGGCCTTCAATTTTTAT+TGG + chr2_4:45986929-45986948 None:intergenic 30.0%
TTATCTTCAGCATTATCATC+GGG + chr2_4:45987118-45987137 None:intergenic 30.0%
AACATCGAATGAAAACTGTT+AGG - chr2_4:45987137-45987156 Msa0330880:intron 30.0%
ATGTTCTTTCTCGTAAATCA+AGG - chr2_4:45987461-45987480 Msa0330880:intron 30.0%
!!! TTTAGTTCTTGCATCTTTTG+GGG + chr2_4:45987572-45987591 None:intergenic 30.0%
!!! CTTTAGTTCTTGCATCTTTT+GGG + chr2_4:45987573-45987592 None:intergenic 30.0%
!!! ACTTTAGTTCTTGCATCTTT+TGG + chr2_4:45987574-45987593 None:intergenic 30.0%
! AAGAACTAAAGTTGTTTCAG+AGG - chr2_4:45987582-45987601 Msa0330880:intron 30.0%
! TTTTTCATTAGACCTTTCAG+GGG + chr2_4:45987752-45987771 None:intergenic 30.0%
AAGAAATAGTGGCAGATAAA+AGG - chr2_4:45987800-45987819 Msa0330880:CDS 30.0%
AGAAATAGTGGCAGATAAAA+GGG - chr2_4:45987801-45987820 Msa0330880:CDS 30.0%
!! TTTTGGTGTAAAGTTGTGAT+AGG - chr2_4:45988116-45988135 Msa0330880:five_prime_UTR 30.0%
TGACGTATAAAGGAAGTAAC+GGG + chr2_4:45980897-45980916 None:intergenic 35.0%
GTGACGTATAAAGGAAGTAA+CGG + chr2_4:45980898-45980917 None:intergenic 35.0%
!! GGTGATAAAGTGTTGCAATT+AGG + chr2_4:45980968-45980987 None:intergenic 35.0%
ATTGAAAGTGGAGAAGGTAA+CGG + chr2_4:45980989-45981008 None:intergenic 35.0%
! AAGTGGAAATGGTTTGGATA+TGG + chr2_4:45981055-45981074 None:intergenic 35.0%
! GTTTCAATTTTGCATCATGC+TGG - chr2_4:45981284-45981303 Msa0330880:exon 35.0%
! GGCTTTGATCTATCTTTATC+TGG - chr2_4:45981373-45981392 Msa0330880:CDS 35.0%
TGATCTATCTTTATCTGGTG+AGG - chr2_4:45981378-45981397 Msa0330880:CDS 35.0%
!! ATTCGAGTTCGATTTTTGGA+TGG + chr2_4:45981648-45981667 None:intergenic 35.0%
TCGAACTCGAATGAATTAGT+TGG - chr2_4:45981656-45981675 Msa0330880:CDS 35.0%
AACTCGAATGAATTAGTTGG+TGG - chr2_4:45981659-45981678 Msa0330880:CDS 35.0%
GAGTACTTATTCTGAGTGAT+TGG - chr2_4:45981705-45981724 Msa0330880:CDS 35.0%
CTTATTCTGAGTGATTGGAT+TGG - chr2_4:45981710-45981729 Msa0330880:CDS 35.0%
AAAAGGGTTGTAGCCAAAAA+AGG - chr2_4:45981793-45981812 Msa0330880:CDS 35.0%
AACGTTATGTTACAAGGCTA+AGG - chr2_4:45981882-45981901 Msa0330880:CDS 35.0%
! CAGTGAGTTTTGCAAAATCA+CGG - chr2_4:45982127-45982146 Msa0330880:CDS 35.0%
GTGAATGCAAACATGTTCTA+AGG - chr2_4:45982238-45982257 Msa0330880:CDS 35.0%
CATTGTCTTGAGAGTTATTG+GGG - chr2_4:45982305-45982324 Msa0330880:CDS 35.0%
ACCATGCAGTTGAAAACATA+TGG - chr2_4:45982445-45982464 Msa0330880:intron 35.0%
GCAATCTGTTCCATACATAT+AGG + chr2_4:45982471-45982490 None:intergenic 35.0%
! TTTTACTCCCTATCATACCA+TGG - chr2_4:45982502-45982521 Msa0330880:intron 35.0%
CTAAGAACCATGGTATGATA+GGG + chr2_4:45982512-45982531 None:intergenic 35.0%
TCTAAGAACCATGGTATGAT+AGG + chr2_4:45982513-45982532 None:intergenic 35.0%
! TTGTACTTCTCTAAGAACCA+TGG + chr2_4:45982522-45982541 None:intergenic 35.0%
! TCTTAGAGAAGTACAAACCT+TGG - chr2_4:45982526-45982545 Msa0330880:intron 35.0%
GGAACAAAAAGGAAAAGGAA+TGG + chr2_4:45982650-45982669 None:intergenic 35.0%
TTCTGTTCAGCACCTATATT+TGG - chr2_4:45982779-45982798 Msa0330880:intron 35.0%
TCTGTTCAGCACCTATATTT+GGG - chr2_4:45982780-45982799 Msa0330880:intron 35.0%
CTGATATCAGTAATCAAAGG+TGG + chr2_4:45982813-45982832 None:intergenic 35.0%
CACCTTTGATTACTGATATC+AGG - chr2_4:45982811-45982830 Msa0330880:intron 35.0%
ACCCTGATATCAGTAATCAA+AGG + chr2_4:45982816-45982835 None:intergenic 35.0%
CTAAGAAAAAGATTGGGCTT+TGG - chr2_4:45983019-45983038 Msa0330880:intron 35.0%
GTCAACAAAGCTGCATATAA+CGG - chr2_4:45983045-45983064 Msa0330880:intron 35.0%
TCAACAAAGCTGCATATAAC+GGG - chr2_4:45983046-45983065 Msa0330880:intron 35.0%
CATATACAACAAATGAGTCG+AGG + chr2_4:45983116-45983135 None:intergenic 35.0%
ACAGTCATCTGAAAATATGG+AGG + chr2_4:45983353-45983372 None:intergenic 35.0%
TCAAGCCCATGTGTAAAAAT+AGG + chr2_4:45983380-45983399 None:intergenic 35.0%
!! TTGTGACTTTTCGTTGTTTC+AGG - chr2_4:45983558-45983577 Msa0330880:intron 35.0%
ACATCAACAACCAGCATATT+GGG + chr2_4:45983806-45983825 None:intergenic 35.0%
AACATCAACAACCAGCATAT+TGG + chr2_4:45983807-45983826 None:intergenic 35.0%
AAATTTGTATCACCAGACCA+AGG - chr2_4:45983830-45983849 Msa0330880:intron 35.0%
CAAATATCTTTACCTTGGTC+TGG + chr2_4:45983845-45983864 None:intergenic 35.0%
TATAGAGCCTTGGTTTAAAG+TGG - chr2_4:45984045-45984064 Msa0330880:intron 35.0%
! TCGATTTTTGCATAAGCAAC+AGG + chr2_4:45984082-45984101 None:intergenic 35.0%
ATGAAGCCATCAGATCTAAA+TGG - chr2_4:45984121-45984140 Msa0330880:CDS 35.0%
ATGACCTTTCACATAAGGAT+CGG + chr2_4:45984237-45984256 None:intergenic 35.0%
TCCTTATGTGAAAGGTCATT+TGG - chr2_4:45984238-45984257 Msa0330880:intron 35.0%
CCTTATGTGAAAGGTCATTT+GGG - chr2_4:45984239-45984258 Msa0330880:intron 35.0%
ATTTGGGAGGATATAGATTC+AGG - chr2_4:45984255-45984274 Msa0330880:intron 35.0%
TCAGAATTCCCATCATAACA+TGG - chr2_4:45984324-45984343 Msa0330880:intron 35.0%
CAGAATTCCCATCATAACAT+GGG - chr2_4:45984325-45984344 Msa0330880:intron 35.0%
GTTACAATCCCATGTTATGA+TGG + chr2_4:45984336-45984355 None:intergenic 35.0%
ATGGGATTGTAACAATGTTC+TGG - chr2_4:45984343-45984362 Msa0330880:intron 35.0%
CAAGGATGTCATCATAGAAA+TGG + chr2_4:45984391-45984410 None:intergenic 35.0%
CATTTCTATGATGACATCCT+TGG - chr2_4:45984389-45984408 Msa0330880:intron 35.0%
AAGTTCAAAGTTCAGACAGA+CGG + chr2_4:45984422-45984441 None:intergenic 35.0%
! ACTTTGAACTTTTCCTCATG+TGG - chr2_4:45984431-45984450 Msa0330880:intron 35.0%
ATGATAATAGCAGAAAAGGC+AGG + chr2_4:45984716-45984735 None:intergenic 35.0%
! CAAACAAAGTGCTAGAGAAA+AGG + chr2_4:45984780-45984799 None:intergenic 35.0%
! CTTTTCTCTAGCACTTTGTT+TGG - chr2_4:45984778-45984797 Msa0330880:CDS 35.0%
CCAGTGATTGAATAATTGGA+AGG + chr2_4:45984850-45984869 None:intergenic 35.0%
CCTTCCAATTATTCAATCAC+TGG - chr2_4:45984847-45984866 Msa0330880:CDS 35.0%
!! ACATCAATGATTTTAGGGAC+GGG - chr2_4:45984919-45984938 Msa0330880:intron 35.0%
ACGGGCAAAAATATGATAAG+TGG - chr2_4:45984937-45984956 Msa0330880:intron 35.0%
CGGGCAAAAATATGATAAGT+GGG - chr2_4:45984938-45984957 Msa0330880:intron 35.0%
GCCACTACAGAAAGTAAAAA+TGG - chr2_4:45984962-45984981 Msa0330880:intron 35.0%
!! CCCATTTTTACTTTCTGTAG+TGG + chr2_4:45984966-45984985 None:intergenic 35.0%
TACAGAAAGTAAAAATGGGG+AGG - chr2_4:45984967-45984986 Msa0330880:intron 35.0%
ATATAATTGAGGTAAGGTGG+GGG + chr2_4:45985044-45985063 None:intergenic 35.0%
GCGAGGAATGAATATAATTG+AGG + chr2_4:45985055-45985074 None:intergenic 35.0%
! GAGGCACTATTATACTTATG+TGG + chr2_4:45985156-45985175 None:intergenic 35.0%
ATAGAAATAGGAGGGATTGT+AGG + chr2_4:45985178-45985197 None:intergenic 35.0%
GAGTGTTAAAATGTGTGTTC+GGG + chr2_4:45985381-45985400 None:intergenic 35.0%
!! TGGCTCTTTTTCATTTTGTG+TGG + chr2_4:45985552-45985571 None:intergenic 35.0%
! TGAAAAAGAGCCAATCGTTT+TGG - chr2_4:45985559-45985578 Msa0330880:intron 35.0%
! TGAAGTCTGCACATTTTTGT+AGG + chr2_4:45985779-45985798 None:intergenic 35.0%
TTCTTGACAACGGAATGAAT+TGG + chr2_4:45985930-45985949 None:intergenic 35.0%
TTTCCAACACAAGTCTTACT+TGG + chr2_4:45985994-45986013 None:intergenic 35.0%
TCTTCAGAAGCCAATTAAAC+AGG - chr2_4:45986172-45986191 Msa0330880:intron 35.0%
GGAGAATAAAGAGGAACAAA+AGG - chr2_4:45986263-45986282 Msa0330880:intron 35.0%
AATAACAAAGGAGCAACTTG+TGG + chr2_4:45986722-45986741 None:intergenic 35.0%
! TGGAGATTTTCCAGATGAAA+CGG + chr2_4:45986885-45986904 None:intergenic 35.0%
TTACAGCCAGATATATCGTT+AGG + chr2_4:45987055-45987074 None:intergenic 35.0%
CGAATGAAAACTGTTAGGAA+AGG - chr2_4:45987142-45987161 Msa0330880:intron 35.0%
! AAATCGGTTCTGTATTTCGT+AGG - chr2_4:45987173-45987192 Msa0330880:intron 35.0%
AGGTCAGTAAATGCTTCTAA+AGG - chr2_4:45987262-45987281 Msa0330880:intron 35.0%
GGTCAGTAAATGCTTCTAAA+GGG - chr2_4:45987263-45987282 Msa0330880:intron 35.0%
! GTCAGTAAATGCTTCTAAAG+GGG - chr2_4:45987264-45987283 Msa0330880:intron 35.0%
GTTATGGATGATAACATTGC+TGG - chr2_4:45987301-45987320 Msa0330880:intron 35.0%
CGTAAATCAAGGAAATCGAA+AGG - chr2_4:45987472-45987491 Msa0330880:intron 35.0%
AGATTCATCACTAGATGAGT+CGG + chr2_4:45987536-45987555 None:intergenic 35.0%
ATTGTGAACCTCATTCACAT+CGG + chr2_4:45987641-45987660 None:intergenic 35.0%
ATTGTGAACCACATTCACAT+CGG + chr2_4:45987680-45987699 None:intergenic 35.0%
!! GTCACATGTAGAGTACTTTT+TGG - chr2_4:45988099-45988118 Msa0330880:five_prime_UTR 35.0%
AGTGAAACGGTGACGTATAA+AGG + chr2_4:45980907-45980926 None:intergenic 40.0%
! GGAAATGGTTTGGATATGGT+GGG + chr2_4:45981051-45981070 None:intergenic 40.0%
! TGGAAATGGTTTGGATATGG+TGG + chr2_4:45981052-45981071 None:intergenic 40.0%
!! TTCATTCCCTTTTTCGCAAG+CGG - chr2_4:45981105-45981124 Msa0330880:three_prime_UTR 40.0%
CTTTATCTGGTGAGGATTCA+TGG - chr2_4:45981386-45981405 Msa0330880:CDS 40.0%
! TGGTGAGGATTCATGGTTTT+TGG - chr2_4:45981393-45981412 Msa0330880:CDS 40.0%
GGTTTGGATTCATTAGTTGG+TGG - chr2_4:45981527-45981546 Msa0330880:CDS 40.0%
TGTTAACCCTCCAATTCTGA+GGG - chr2_4:45981560-45981579 Msa0330880:CDS 40.0%
! GCCATATGTTTTCAACTGCA+TGG + chr2_4:45982449-45982468 None:intergenic 40.0%
ATGAATCATACAGCAGTCCA+AGG + chr2_4:45982546-45982565 None:intergenic 40.0%
GTGGGTTTCTTCCCAAATAT+AGG + chr2_4:45982794-45982813 None:intergenic 40.0%
! TTTTACGCTGTGATCAATGC+AGG - chr2_4:45982934-45982953 Msa0330880:intron 40.0%
TCAATGCAGGTTCTTGAGTT+AGG - chr2_4:45982947-45982966 Msa0330880:intron 40.0%
! ATAACGGGAATGCATGTTGA+AGG - chr2_4:45983061-45983080 Msa0330880:intron 40.0%
TAACGGGAATGCATGTTGAA+GGG - chr2_4:45983062-45983081 Msa0330880:intron 40.0%
GAGTGAAGTTTCTCAAGGAA+TGG - chr2_4:45983291-45983310 Msa0330880:intron 40.0%
ACACGTATACGACCAAGAAA+AGG + chr2_4:45983317-45983336 None:intergenic 40.0%
TCGTATACGTGTATGCTTTG+TGG - chr2_4:45983325-45983344 Msa0330880:intron 40.0%
AAATTTGCAGCCCAATATGC+TGG - chr2_4:45983793-45983812 Msa0330880:intron 40.0%
AGGATTCTAGTGAGGGTTAT+GGG + chr2_4:45983924-45983943 None:intergenic 40.0%
AAGGATTCTAGTGAGGGTTA+TGG + chr2_4:45983925-45983944 None:intergenic 40.0%
TTCTCGTCCACTTTAAACCA+AGG + chr2_4:45984055-45984074 None:intergenic 40.0%
! TTGGTTTAAAGTGGACGAGA+AGG - chr2_4:45984054-45984073 Msa0330880:intron 40.0%
TTAGCCGATCCTTATGTGAA+AGG - chr2_4:45984230-45984249 Msa0330880:intron 40.0%
CCCAAATGACCTTTCACATA+AGG + chr2_4:45984242-45984261 None:intergenic 40.0%
TATGTGAAAGGTCATTTGGG+AGG - chr2_4:45984242-45984261 Msa0330880:intron 40.0%
ACTTTCTCCAAAATGGCAAG+AGG - chr2_4:45984298-45984317 Msa0330880:intron 40.0%
!! CTGAATTCCTCTTGCCATTT+TGG + chr2_4:45984308-45984327 None:intergenic 40.0%
GGTTATTGAAGTTCGTGACA+AGG - chr2_4:45984364-45984383 Msa0330880:intron 40.0%
CACTAGATGTCGGTGTAAAA+TGG - chr2_4:45984601-45984620 Msa0330880:intron 40.0%
AGGAATCAACATATAGGCTC+AGG + chr2_4:45985119-45985138 None:intergenic 40.0%
ATGTGGAGTGAACAATGTTG+AGG + chr2_4:45985139-45985158 None:intergenic 40.0%
! TATTGGTTGGGAATTAAGGG+CGG + chr2_4:45985409-45985428 None:intergenic 40.0%
! CTTAGTACAAGAGAGAGCAT+TGG - chr2_4:45985959-45985978 Msa0330880:intron 40.0%
ACTCCAAGTAAGACTTGTGT+TGG - chr2_4:45985988-45986007 Msa0330880:intron 40.0%
ATAACTAGAGTGTAACCCGT+GGG + chr2_4:45986657-45986676 None:intergenic 40.0%
TATAACTAGAGTGTAACCCG+TGG + chr2_4:45986658-45986677 None:intergenic 40.0%
! TTTTCTTGGCTCCCACATTT+GGG + chr2_4:45986993-45987012 None:intergenic 40.0%
AGGGAACCTAACGATATATC+TGG - chr2_4:45987046-45987065 Msa0330880:intron 40.0%
!! ATACAGAACCGATTTTGTGC+AGG + chr2_4:45987168-45987187 None:intergenic 40.0%
GTTCTGTATTTCGTAGGAGT+CGG - chr2_4:45987179-45987198 Msa0330880:intron 40.0%
ATTTCGTAGGAGTCGGAAAA+TGG - chr2_4:45987186-45987205 Msa0330880:intron 40.0%
CGGAAAATGGACGATAATTC+AGG - chr2_4:45987199-45987218 Msa0330880:CDS 40.0%
CTAATGTTATCACGTGGAGA+TGG + chr2_4:45987244-45987263 None:intergenic 40.0%
CATCTCCACGTGATAACATT+AGG - chr2_4:45987242-45987261 Msa0330880:CDS 40.0%
ACTGACCTAATGTTATCACG+TGG + chr2_4:45987250-45987269 None:intergenic 40.0%
! GTAAATGCTTCTAAAGGGGT+TGG - chr2_4:45987268-45987287 Msa0330880:intron 40.0%
TCTACCTGAATCTTACCAGT+CGG + chr2_4:45987331-45987350 None:intergenic 40.0%
GGTAAGATTCAGGTAGAAAG+TGG - chr2_4:45987334-45987353 Msa0330880:intron 40.0%
TCAGGTAGAAAGTGGATCAA+CGG - chr2_4:45987342-45987361 Msa0330880:intron 40.0%
TAGAAAGTGGATCAACGGAA+GGG - chr2_4:45987347-45987366 Msa0330880:intron 40.0%
AAAGAGAGATGTCAAGGACA+TGG - chr2_4:45987390-45987409 Msa0330880:intron 40.0%
ACCAATGTTACATGGAGCAA+TGG + chr2_4:45987608-45987627 None:intergenic 40.0%
ACCTCATTCACATCGGATTT+GGG + chr2_4:45987634-45987653 None:intergenic 40.0%
AACCTCATTCACATCGGATT+TGG + chr2_4:45987635-45987654 None:intergenic 40.0%
ACCACATTCACATCGGATTT+GGG + chr2_4:45987673-45987692 None:intergenic 40.0%
AACCACATTCACATCGGATT+TGG + chr2_4:45987674-45987693 None:intergenic 40.0%
! TTTATGCCACTAAGTGCTGT+TGG - chr2_4:45988158-45988177 Msa0330880:five_prime_UTR 40.0%
!!! GTTGTACTTTTTCAGCTCAG+AGG - chr2_4:45988182-45988201 Msa0330880:five_prime_UTR 40.0%
!! TCATTCCCTTTTTCGCAAGC+GGG - chr2_4:45981106-45981125 Msa0330880:three_prime_UTR 45.0%
TAAACCCCGCTTGCGAAAAA+GGG + chr2_4:45981114-45981133 None:intergenic 45.0%
ATAAACCCCGCTTGCGAAAA+AGG + chr2_4:45981115-45981134 None:intergenic 45.0%
GTGTTAACCCTCCAATTCTG+AGG - chr2_4:45981559-45981578 Msa0330880:CDS 45.0%
! CTTAGTTACCGACTGAACTC+CGG + chr2_4:45981600-45981619 None:intergenic 45.0%
! CTGAGTGATTGGATTGGATC+TGG - chr2_4:45981716-45981735 Msa0330880:CDS 45.0%
! AGCAGTGAGCTCTGCAATTT+TGG + chr2_4:45982194-45982213 None:intergenic 45.0%
! CTCACTGCTCACTGTGATTT+TGG - chr2_4:45982205-45982224 Msa0330880:CDS 45.0%
!! CTGATTCTGAAACAGTTCGG+TGG - chr2_4:45982418-45982437 Msa0330880:intron 45.0%
ATGCATGTTGAAGGGAAGGT+AGG - chr2_4:45983070-45983089 Msa0330880:intron 45.0%
GGTAGGAGTGAAGTTTCTCA+AGG - chr2_4:45983286-45983305 Msa0330880:intron 45.0%
! CTCAAGGAATGGCCTTTTCT+TGG - chr2_4:45983302-45983321 Msa0330880:intron 45.0%
CTTGATGTGACAGAACTTCC+AGG - chr2_4:45983395-45983414 Msa0330880:intron 45.0%
ACAGAACTTCCAGGAATTGC+TGG - chr2_4:45983404-45983423 Msa0330880:intron 45.0%
AAGGGTCTGTTCAAACGCAA+TGG + chr2_4:45983596-45983615 None:intergenic 45.0%
GTTTGAACAGACCCTTGTTG+AGG - chr2_4:45983600-45983619 Msa0330880:intron 45.0%
GACTTCACTCACCTCAACAA+GGG + chr2_4:45983614-45983633 None:intergenic 45.0%
AGACTTCACTCACCTCAACA+AGG + chr2_4:45983615-45983634 None:intergenic 45.0%
GGATTCTAGTGAGGGTTATG+GGG + chr2_4:45983923-45983942 None:intergenic 45.0%
CACATCACCCACTATTGTAC+AGG + chr2_4:45984564-45984583 None:intergenic 45.0%
!! CTGTACAATAGTGGGTGATG+TGG - chr2_4:45984562-45984581 Msa0330880:intron 45.0%
AACCAATGTCACTCTCTTGC+AGG - chr2_4:45984883-45984902 Msa0330880:CDS 45.0%
ACCAATGTCACTCTCTTGCA+GGG - chr2_4:45984884-45984903 Msa0330880:CDS 45.0%
GAAATAGGAGGGATTGTAGG+AGG + chr2_4:45985175-45985194 None:intergenic 45.0%
GTAACTAGAGTGTAACCCGT+GGG + chr2_4:45986526-45986545 None:intergenic 45.0%
TGTAACTAGAGTGTAACCCG+TGG + chr2_4:45986527-45986546 None:intergenic 45.0%
GCAAATGAGACCACCAACAA+AGG - chr2_4:45986848-45986867 Msa0330880:intron 45.0%
TGAGAAGGAACCTTTGTTGG+TGG + chr2_4:45986861-45986880 None:intergenic 45.0%
GGATGAGAAGGAACCTTTGT+TGG + chr2_4:45986864-45986883 None:intergenic 45.0%
TCCTTCTCATCCGTTTCATC+TGG - chr2_4:45986872-45986891 Msa0330880:intron 45.0%
TCCAGATGAAACGGATGAGA+AGG + chr2_4:45986876-45986895 None:intergenic 45.0%
ATTGAAGGCCAAGAGAAGAC+AGG - chr2_4:45986935-45986954 Msa0330880:CDS 45.0%
TCCAAACACCTGTCTTCTCT+TGG + chr2_4:45986946-45986965 None:intergenic 45.0%
AAGCGAAGTTCCCCAAATGT+GGG - chr2_4:45986979-45986998 Msa0330880:intron 45.0%
TTTCTTGGCTCCCACATTTG+GGG + chr2_4:45986992-45987011 None:intergenic 45.0%
! CTTTTCTTGGCTCCCACATT+TGG + chr2_4:45986994-45987013 None:intergenic 45.0%
CAAATGTGGGAGCCAAGAAA+AGG - chr2_4:45986992-45987011 Msa0330880:intron 45.0%
!!! CGTCGATTCTTGCCTTTTCT+TGG + chr2_4:45987007-45987026 None:intergenic 45.0%
CCTCGACACAGAAATTCAGA+GGG - chr2_4:45987027-45987046 Msa0330880:intron 45.0%
GGCTGTAATTCAGCTGTATC+TGG - chr2_4:45987067-45987086 Msa0330880:intron 45.0%
ACTGCTGCTGTCATTGTTCA+AGG + chr2_4:45987095-45987114 None:intergenic 45.0%
AGGAAAGGCCTGCACAAAAT+CGG - chr2_4:45987157-45987176 Msa0330880:intron 45.0%
TAATTCAGGTCCTATTGCGC+AGG - chr2_4:45987213-45987232 Msa0330880:CDS 45.0%
!! GGTTGGCGTGAAGTTTGTTA+TGG - chr2_4:45987285-45987304 Msa0330880:intron 45.0%
CTTTCCGACTGGTAAGATTC+AGG - chr2_4:45987324-45987343 Msa0330880:intron 45.0%
GTAGAAAGTGGATCAACGGA+AGG - chr2_4:45987346-45987365 Msa0330880:intron 45.0%
TCCTTGACATCTCTCTTTGC+CGG + chr2_4:45987388-45987407 None:intergenic 45.0%
GCCATTGCTCCATGTAACAT+TGG - chr2_4:45987604-45987623 Msa0330880:intron 45.0%
TTGGGGGAACCAATGTTACA+TGG + chr2_4:45987616-45987635 None:intergenic 45.0%
CTCATTCACATCGGATTTGG+GGG + chr2_4:45987632-45987651 None:intergenic 45.0%
CCTCATTCACATCGGATTTG+GGG + chr2_4:45987633-45987652 None:intergenic 45.0%
CACATTCACATCGGATTTGG+GGG + chr2_4:45987671-45987690 None:intergenic 45.0%
CCACATTCACATCGGATTTG+GGG + chr2_4:45987672-45987691 None:intergenic 45.0%
AAAAGCCATTCTCCCCTGAA+AGG - chr2_4:45987737-45987756 Msa0330880:intron 45.0%
TTAGACCTTTCAGGGGAGAA+TGG + chr2_4:45987745-45987764 None:intergenic 45.0%
GAGCTGTGTTCGATATCTGT+CGG + chr2_4:45987898-45987917 None:intergenic 45.0%
GTAGCTACATGCATCAGTGT+CGG - chr2_4:45987967-45987986 Msa0330880:five_prime_UTR 45.0%
!! ACATGCATCAGTGTCGGTAT+CGG - chr2_4:45987973-45987992 Msa0330880:five_prime_UTR 45.0%
ACAACACCAACAGCACTTAG+TGG + chr2_4:45988167-45988186 None:intergenic 45.0%
!!! AATATCAAATTTTAATAAAA+TGG - chr2_4:45981163-45981182 Msa0330880:three_prime_UTR 5.0%
!!! ATATCAAATTTTAATAAAAT+GGG - chr2_4:45981164-45981183 Msa0330880:three_prime_UTR 5.0%
!!! ATTTATATTTTTTTTTCTAT+AGG - chr2_4:45983259-45983278 Msa0330880:intron 5.0%
!!! AGTTATAATATTTTTATTTT+TGG + chr2_4:45985332-45985351 None:intergenic 5.0%
!! TGTAAATATATTTATTATTA+TGG + chr2_4:45985826-45985845 None:intergenic 5.0%
!! CATTCCCTTTTTCGCAAGCG+GGG - chr2_4:45981107-45981126 Msa0330880:three_prime_UTR 50.0%
! TAACCCTCCAATTCTGAGGG+AGG - chr2_4:45981563-45981582 Msa0330880:CDS 50.0%
! AACCCTCCAATTCTGAGGGA+GGG - chr2_4:45981564-45981583 Msa0330880:CDS 50.0%
CTGGTAATCCGGAGTTCAGT+CGG - chr2_4:45981589-45981608 Msa0330880:CDS 50.0%
CTTGAGAGTTATTGGGGCTG+TGG - chr2_4:45982311-45982330 Msa0330880:CDS 50.0%
CCAAGTGGTCATCATCACAC+TGG + chr2_4:45982845-45982864 None:intergenic 50.0%
! CCAGTGTGATGATGACCACT+TGG - chr2_4:45982842-45982861 Msa0330880:intron 50.0%
GGGAATGCATGTTGAAGGGA+AGG - chr2_4:45983066-45983085 Msa0330880:intron 50.0%
TTGAAGGGAAGGTAGGACTG+CGG - chr2_4:45983077-45983096 Msa0330880:intron 50.0%
AACTTCCAGGAATTGCTGGC+TGG - chr2_4:45983408-45983427 Msa0330880:intron 50.0%
AGACAGACGGAACTAACCCA+AGG + chr2_4:45984409-45984428 None:intergenic 50.0%
TCCCTGCAAGAGAGTGACAT+TGG + chr2_4:45984888-45984907 None:intergenic 50.0%
TAATTGAGGTAAGGTGGGGG+AGG + chr2_4:45985041-45985060 None:intergenic 50.0%
ATCAACACACACGCAACCCA+CGG - chr2_4:45986507-45986526 Msa0330880:intron 50.0%
ATCATCACACGCACAACCCA+CGG - chr2_4:45986638-45986657 Msa0330880:CDS 50.0%
GAGCAACTTGTGGCACTACA+TGG + chr2_4:45986712-45986731 None:intergenic 50.0%
GCCAAGAGAAGACAGGTGTT+TGG - chr2_4:45986942-45986961 Msa0330880:CDS 50.0%
GGTGTTTGGATACATCAGCC+AGG - chr2_4:45986956-45986975 Msa0330880:intron 50.0%
ATTTGGGGAACTTCGCTTCC+TGG + chr2_4:45986977-45986996 None:intergenic 50.0%
GAAGCGAAGTTCCCCAAATG+TGG - chr2_4:45986978-45986997 Msa0330880:intron 50.0%
GCCTCGACACAGAAATTCAG+AGG - chr2_4:45987026-45987045 Msa0330880:intron 50.0%
CCCTCTGAATTTCTGTGTCG+AGG + chr2_4:45987030-45987049 None:intergenic 50.0%
GATGGAAAGTCCTGCGCAAT+AGG + chr2_4:45987226-45987245 None:intergenic 50.0%
!! AACATTGCTGGCTTTCCGAC+TGG - chr2_4:45987313-45987332 Msa0330880:intron 50.0%
CCTTGACATCTCTCTTTGCC+GGG + chr2_4:45987387-45987406 None:intergenic 50.0%
CCCCAAATCCGATGTGAATG+AGG - chr2_4:45987630-45987649 Msa0330880:intron 50.0%
CCCCAAATCCGATGTGAATG+TGG - chr2_4:45987630-45987649 Msa0330880:intron 50.0%
! TTGACCACAGTGGTGTTGGA+TGG + chr2_4:45987706-45987725 None:intergenic 50.0%
CTTGTTGACCACAGTGGTGT+TGG + chr2_4:45987710-45987729 None:intergenic 50.0%
CAACACCACTGTGGTCAACA+AGG - chr2_4:45987708-45987727 Msa0330880:intron 50.0%
! TCAGGGGAGAATGGCTTTTG+AGG + chr2_4:45987736-45987755 None:intergenic 50.0%
CGCAAGCGGGGTTTATAACG+CGG - chr2_4:45981119-45981138 Msa0330880:three_prime_UTR 55.0%
! ACCCTCCAATTCTGAGGGAG+GGG - chr2_4:45981565-45981584 Msa0330880:CDS 55.0%
ACCCCTCCCTCAGAATTGGA+GGG + chr2_4:45981569-45981588 None:intergenic 55.0%
ACAAGCCAGCCAGCAATTCC+TGG + chr2_4:45983416-45983435 None:intergenic 55.0%
TCAACACACACGCAACCCAC+GGG - chr2_4:45986508-45986527 Msa0330880:intron 55.0%
TCATCACACGCACAACCCAC+GGG - chr2_4:45986639-45986658 Msa0330880:CDS 55.0%
AGTGGATCAACGGAAGGGAG+TGG - chr2_4:45987352-45987371 Msa0330880:intron 55.0%
TCTCTCTTTGCCGGGCTATC+AGG + chr2_4:45987379-45987398 None:intergenic 55.0%
CCCGGCAAAGAGAGATGTCA+AGG - chr2_4:45987384-45987403 Msa0330880:intron 55.0%
TGTGCCATCCAACACCACTG+TGG - chr2_4:45987699-45987718 Msa0330880:intron 55.0%
AGGCTCCTTGTTGACCACAG+TGG + chr2_4:45987716-45987735 None:intergenic 55.0%
GACCCCTCCCTCAGAATTGG+AGG + chr2_4:45981570-45981589 None:intergenic 60.0%
CCAGACCCCTCCCTCAGAAT+TGG + chr2_4:45981573-45981592 None:intergenic 60.0%
! CCAATTCTGAGGGAGGGGTC+TGG - chr2_4:45981570-45981589 Msa0330880:CDS 60.0%
GAGGGAGGGGTCTGGTAATC+CGG - chr2_4:45981578-45981597 Msa0330880:CDS 60.0%
TGAGGTAAGGTGGGGGAGGA+GGG + chr2_4:45985037-45985056 None:intergenic 60.0%
TTGAGGTAAGGTGGGGGAGG+AGG + chr2_4:45985038-45985057 None:intergenic 60.0%
AGGGAGTGGTCCTGATAGCC+CGG - chr2_4:45987366-45987385 Msa0330880:intron 60.0%
GAGGTAAGGTGGGGGAGGAG+GGG + chr2_4:45985036-45985055 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 45980872 45988271 45980872 ID=Msa0330880;Name=Msa0330880
chr2_4 mRNA 45980872 45988271 45980872 ID=Msa0330880-mRNA-1;Parent=Msa0330880;Name=Msa0330880-mRNA-1;_AED=0.07;_eAED=0.07;_QI=397|0.83|0.92|0.92|1|1|13|425|779
chr2_4 exon 45980872 45982355 45980872 ID=Msa0330880-mRNA-1:exon:13936;Parent=Msa0330880-mRNA-1
chr2_4 exon 45984115 45984238 45984115 ID=Msa0330880-mRNA-1:exon:13935;Parent=Msa0330880-mRNA-1
chr2_4 exon 45984732 45984915 45984732 ID=Msa0330880-mRNA-1:exon:13934;Parent=Msa0330880-mRNA-1
chr2_4 exon 45985001 45985093 45985001 ID=Msa0330880-mRNA-1:exon:13933;Parent=Msa0330880-mRNA-1
chr2_4 exon 45985292 45985340 45985292 ID=Msa0330880-mRNA-1:exon:13932;Parent=Msa0330880-mRNA-1
chr2_4 exon 45985522 45985563 45985522 ID=Msa0330880-mRNA-1:exon:13931;Parent=Msa0330880-mRNA-1
chr2_4 exon 45985710 45985862 45985710 ID=Msa0330880-mRNA-1:exon:13930;Parent=Msa0330880-mRNA-1
chr2_4 exon 45986056 45986187 45986056 ID=Msa0330880-mRNA-1:exon:13929;Parent=Msa0330880-mRNA-1
chr2_4 exon 45986280 45986372 45986280 ID=Msa0330880-mRNA-1:exon:13928;Parent=Msa0330880-mRNA-1
chr2_4 exon 45986589 45986732 45986589 ID=Msa0330880-mRNA-1:exon:13927;Parent=Msa0330880-mRNA-1
chr2_4 exon 45986906 45986971 45986906 ID=Msa0330880-mRNA-1:exon:13926;Parent=Msa0330880-mRNA-1
chr2_4 exon 45987194 45987268 45987194 ID=Msa0330880-mRNA-1:exon:13925;Parent=Msa0330880-mRNA-1
chr2_4 exon 45987749 45988271 45987749 ID=Msa0330880-mRNA-1:exon:13924;Parent=Msa0330880-mRNA-1
chr2_4 five_prime_UTR 45987875 45988271 45987875 ID=Msa0330880-mRNA-1:five_prime_utr;Parent=Msa0330880-mRNA-1
chr2_4 CDS 45987749 45987874 45987749 ID=Msa0330880-mRNA-1:cds;Parent=Msa0330880-mRNA-1
chr2_4 CDS 45987194 45987268 45987194 ID=Msa0330880-mRNA-1:cds;Parent=Msa0330880-mRNA-1
chr2_4 CDS 45986906 45986971 45986906 ID=Msa0330880-mRNA-1:cds;Parent=Msa0330880-mRNA-1
chr2_4 CDS 45986589 45986732 45986589 ID=Msa0330880-mRNA-1:cds;Parent=Msa0330880-mRNA-1
chr2_4 CDS 45986280 45986372 45986280 ID=Msa0330880-mRNA-1:cds;Parent=Msa0330880-mRNA-1
chr2_4 CDS 45986056 45986187 45986056 ID=Msa0330880-mRNA-1:cds;Parent=Msa0330880-mRNA-1
chr2_4 CDS 45985710 45985862 45985710 ID=Msa0330880-mRNA-1:cds;Parent=Msa0330880-mRNA-1
chr2_4 CDS 45985522 45985563 45985522 ID=Msa0330880-mRNA-1:cds;Parent=Msa0330880-mRNA-1
chr2_4 CDS 45985292 45985340 45985292 ID=Msa0330880-mRNA-1:cds;Parent=Msa0330880-mRNA-1
chr2_4 CDS 45985001 45985093 45985001 ID=Msa0330880-mRNA-1:cds;Parent=Msa0330880-mRNA-1
chr2_4 CDS 45984732 45984915 45984732 ID=Msa0330880-mRNA-1:cds;Parent=Msa0330880-mRNA-1
chr2_4 CDS 45984115 45984238 45984115 ID=Msa0330880-mRNA-1:cds;Parent=Msa0330880-mRNA-1
chr2_4 CDS 45981297 45982355 45981297 ID=Msa0330880-mRNA-1:cds;Parent=Msa0330880-mRNA-1
chr2_4 three_prime_UTR 45980872 45981296 45980872 ID=Msa0330880-mRNA-1:three_prime_utr;Parent=Msa0330880-mRNA-1
Gene Sequence

>Msa0330880

ATGGATATAACCGAAGTTTCAATTTTGCATCATGCTGGAATCGTTTTGATTTCTCTATGGTTGCTATCTACATTCGATCGTTGTCATGCTGCTTTTTATTTTGTGGCTTTGATCTATCTTTATCTGGTTCATGAACGTTATGTTACAAGGCTAAGGAAGAAGTTGCAGTTTGAAGAGAGAAAACAATCTAATCAAAGAAGGCTTCAAAGTGTAGTTTTTGCCAAAATTGCAGAGCTCACTGCTCACTGTGATTTTGGCAATCTCACCGTACTTTCTGATTCTGAAACAGTTCGGTGGTTGAACCATGCAGTTGAAAACATATGGCCTATATGTATGGAACAGATTGCATCTCAGAAGATTTTACTCCCTATCATACCATGGTTCTTAGAGAAGTACAAACCTTGGACTGCTAAAGAAGCTTCTGTTCAGCACCTATATTTGGGAAGAAACCCACCTTTGATTACTGATATCAGGGTACTTCGCCAGTGTGATGATGACCACTTGGTTCTTGAGTTAGGAATGAATTTTCTCACGGGTGATGATATGAGTGCAATACTTGCTGTGAAACTAAGAAAAAGATTGGGCTTTGGAATGTCAACAAAGCTGCATATAACGGGAATGCATGTTGAAGGGAAGGTCTTGGTAGGAGTGAAGTTTCTCAAGGAATGGCCTTTTCTTGGTCGTATACGTGTATGCTTTGTGGAGCCTCCATATTTTCAGATGACTGTCAAACCTATTTTTACACATGGGCTTGATGTGACAGAACTTCCAGGAATTGCTGGCTGGCTTGATAAGCTTCTGTCCATTGCGTTTGAACAGACCCTTGTTGAGCCCAATATGCTGGTTGTTGATGTTGAGAAATTTGTATCACCAGACCAAGAGCCTTGGTTTAAAGTGGACGAGAAGGAACCTGTTGCTTATGCAAAAATCGAAATTGTTGAGGCAGCTGAAATGAAGCCATCAGATCTAAATGGATTAGCCGATCCTTATGTGAAAGGTCATTTGGGAGGATATAGATTCAGGACGAAGATACAAAAGAAAACACTTTCTCCAAAATGGCAAGAGGAATTCAGAATTCCCATCATAACATGGGATTGTAACAATGTTCTGGTTATTGAAGTTCGTGACAAGGACCATTTCTATGATGACATCCTTGGGGACTGTTCTGTGAACATCAATGATTTTAGGGACGGGCAAAAATATGATAAGTGGGTGCCACTACAGAAAGTAAAAATGGGGAGGTTGCACTTGCGAATAACAGTTCTTGATGATAAGGAAAAGGAAGCTGATACTACATGTGACCAAGAAACAATAGATATTGAAGAAAGAAAAGATTCTTTTGCAAATGAGACCACCAACAAAGGTTCCTTCTCATCCGTTTCATCTGGAAAATCTCCAAAATTGGCAGATAACTATGAGCCAATAAAAATTGAAGGCCAAGAGAAGACAGGTGTTTGGATACATCAGCCAGGAAGCGAAGTTCCCCAAATGTGGGAGCCAAGAAAAGGCAAGAATCGACGCCTCGACACAGAAATTCAGAGGGAACCTAACGATATATCTGGCTGTAATTCAGCTGTATCTGGATCCTTGAACAATGACAGCAGCAGTCCCGATGATAATGCTGAAGATAAACATCGAATGAAAACTGTTAGGAAAGGCCTGCACAAAATCGGTTCTGTATTTCGTAGGAGTCGGAAAATGGACGATAATTCAGGTCCTATTGCGCAGGACTTTCCATCTCCACGTGATAACATTAGGTCAGTAAATGCTTCTAAAGGGGTTGGCGTGAAGTTTGTTATGGATGATAACATTGCTGGCTTTCCGACTGGTAAGATTCAGGTAGAAAGTGGATCAACGGAAGGGAGTGGTCCTGATAGCCCGGCAAAGAGAGATGTCAAGGACATGGCAAAGAATATTTTCAAACATGCAGAAAAATCAGCTCGCAGCTTAAAACATGTTCTTTCTCGTAAATCAAGGAAATCGAAAGGTGATTCAGCAGAAACATTTTGTGAAAGAGAAAATGAATCCGACTCATCTAGTGATGAATCTCTTTCAGTTCAGTCCCCAAAAGATGCAAGAACTAAAGTTGTTTCAGAGGCCATTGCTCCATGTAACATTGGTTCCCCCAAATCCGATGTGAATGAGGTTCACAATGTTCGTTCCCCCAAATCCGATGTGAATGTGGTTCACAATGTGCCATCCAACACCACTGTGGTCAACAAGGAGCCTCAAAAGCCATTCTCCCCTGAAAGGTCTAATGAAAAAATTGTTATGTCTCGCGAACATGATAAAGAAGAAATAGTGGCAGATAAAAGGGTTGTCAGCAGTATAGCAGAGTGA

Protein sequence

>Msa0330880

MDITEVSILHHAGIVLISLWLLSTFDRCHAAFYFVALIYLYLVHERYVTRLRKKLQFEERKQSNQRRLQSVVFAKIAELTAHCDFGNLTVLSDSETVRWLNHAVENIWPICMEQIASQKILLPIIPWFLEKYKPWTAKEASVQHLYLGRNPPLITDIRVLRQCDDDHLVLELGMNFLTGDDMSAILAVKLRKRLGFGMSTKLHITGMHVEGKVLVGVKFLKEWPFLGRIRVCFVEPPYFQMTVKPIFTHGLDVTELPGIAGWLDKLLSIAFEQTLVEPNMLVVDVEKFVSPDQEPWFKVDEKEPVAYAKIEIVEAAEMKPSDLNGLADPYVKGHLGGYRFRTKIQKKTLSPKWQEEFRIPIITWDCNNVLVIEVRDKDHFYDDILGDCSVNINDFRDGQKYDKWVPLQKVKMGRLHLRITVLDDKEKEADTTCDQETIDIEERKDSFANETTNKGSFSSVSSGKSPKLADNYEPIKIEGQEKTGVWIHQPGSEVPQMWEPRKGKNRRLDTEIQREPNDISGCNSAVSGSLNNDSSSPDDNAEDKHRMKTVRKGLHKIGSVFRRSRKMDDNSGPIAQDFPSPRDNIRSVNASKGVGVKFVMDDNIAGFPTGKIQVESGSTEGSGPDSPAKRDVKDMAKNIFKHAEKSARSLKHVLSRKSRKSKGDSAETFCERENESDSSSDESLSVQSPKDARTKVVSEAIAPCNIGSPKSDVNEVHNVRSPKSDVNVVHNVPSNTTVVNKEPQKPFSPERSNEKIVMSREHDKEEIVADKRVVSSIAE*