Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1324470 | XP_003611879.1 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1324470 | sp|P49204|RS42_ARATH | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0.0 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1324470 | B7FL29 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0691760 | Msa1324470 | 0.821721 | 3.472513e-53 | -8.615850e-47 |
| Msa1189540 | Msa1324470 | 0.830577 | 2.716164e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1324470 | MtrunA17_Chr5g0403311 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| Msa1324470 | MtrunA17_Chr8g0357951 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| Msa1324470 | MtrunA17_Chr4g0005611 | 95.094 | 265 | 12 | 1 | 1 | 265 | 1 | 264 | 0.0 | 518 |
| Msa1324470 | MtrunA17_Chr7g0243211 | 94.510 | 255 | 14 | 0 | 1 | 255 | 1 | 255 | 0.0 | 501 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1324470 | AT5G07090.1 | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0.0 | 506 |
| Msa1324470 | AT2G17360.1 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 0.0 | 504 |
| Msa1324470 | AT5G58420.1 | 90.076 | 262 | 26 | 0 | 1 | 262 | 1 | 262 | 0.0 | 503 |
| Msa1324470 | AT5G07090.3 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.51e-169 | 468 |
| Msa1324470 | AT5G07090.2 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.51e-169 | 468 |
| Msa1324470 | AT2G17360.2 | 91.160 | 181 | 16 | 0 | 1 | 181 | 1 | 181 | 2.71e-125 | 354 |
Find 99 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATATCTTTATCAATTT+TGG | 0.092164 | 8_4:+34641815 | Msa1324470:three_prime_UTR |
| CTCTCTAGCGTTGGAACTTT+TGG | 0.169265 | 8_4:+34639459 | Msa1324470:five_prime_UTR |
| GCATTGGATGCTTGACAAAT+TGG | 0.267158 | 8_4:+34639830 | Msa1324470:CDS |
| TGTGGTCCGGACGAGGGTTT+TGG | 0.274014 | 8_4:-34639948 | None:intergenic |
| CGTCCGGACCACACAAATCT+AGG | 0.300715 | 8_4:+34639958 | Msa1324470:CDS |
| TTAGCCCTGATGACGGGGTC+TGG | 0.336130 | 8_4:-34641417 | None:intergenic |
| AGGTTCGTTCAGTGCAATTC+GGG | 0.351340 | 8_4:+34641343 | Msa1324470:CDS |
| TTCCTCCAGATCCAACTTGA+TGG | 0.352738 | 8_4:-34641445 | None:intergenic |
| GCTACCCAGACCCCGTCATC+AGG | 0.361624 | 8_4:+34641412 | Msa1324470:CDS |
| TTGTCAAGCATCCAATGCTT+GGG | 0.386706 | 8_4:-34639825 | None:intergenic |
| GCTCTGTTAATCTCACAATA+TGG | 0.387866 | 8_4:+34639484 | Msa1324470:exon |
| GCGGATTGTGCGACCATCAT+AGG | 0.389914 | 8_4:-34641391 | None:intergenic |
| GACTTATCCAGCTGGATTCA+TGG | 0.391447 | 8_4:+34640103 | Msa1324470:CDS |
| ATTTCATTAAATTTGATGTT+GGG | 0.401296 | 8_4:+34641481 | Msa1324470:CDS |
| AGTTGCTGCTTAAATATCTA+TGG | 0.401734 | 8_4:+34641755 | Msa1324470:exon |
| GGGAATGTCGTTATGGTTAC+CGG | 0.402699 | 8_4:+34641501 | Msa1324470:CDS |
| AAGGTTCGTTCAGTGCAATT+CGG | 0.403517 | 8_4:+34641342 | Msa1324470:CDS |
| CTGGTCAATGTGTTCACTAT+TGG | 0.427005 | 8_4:+34641633 | Msa1324470:CDS |
| TTCCCTAGATTTGTGTGGTC+CGG | 0.428618 | 8_4:-34639961 | None:intergenic |
| TTTGTCAAGCATCCAATGCT+TGG | 0.437860 | 8_4:-34639826 | None:intergenic |
| CCATCATAGGTGTTAAGGTA+TGG | 0.437978 | 8_4:-34641378 | None:intergenic |
| TGCGACCATCATAGGTGTTA+AGG | 0.441324 | 8_4:-34641383 | None:intergenic |
| GTGGAGACGGAAGCGGCCTT+TGG | 0.446180 | 8_4:-34640828 | None:intergenic |
| TCCTTGTTGACGGCAAAGTC+AGG | 0.447044 | 8_4:+34640072 | Msa1324470:CDS |
| GATTTCATTAAATTTGATGT+TGG | 0.447382 | 8_4:+34641480 | Msa1324470:CDS |
| TGATGTTGGGAATGTCGTTA+TGG | 0.448181 | 8_4:+34641494 | Msa1324470:CDS |
| AGATTTGTGTGGTCCGGACG+AGG | 0.457628 | 8_4:-34639955 | None:intergenic |
| TCATGAGTTTGCAACTCGTC+TGG | 0.461260 | 8_4:+34641614 | Msa1324470:CDS |
| CATTGGATGCTTGACAAATT+GGG | 0.462746 | 8_4:+34639831 | Msa1324470:CDS |
| CAACGACATGTCCTTGTTGA+CGG | 0.463122 | 8_4:+34640062 | Msa1324470:CDS |
| ATTCTAGCTGGATATTGTAA+TGG | 0.465035 | 8_4:+34641915 | Msa1324470:three_prime_UTR |
| GTGTCATTAGCCCTGATGAC+GGG | 0.468677 | 8_4:-34641423 | None:intergenic |
| TGAGAATAGCGATGACTTCA+CGG | 0.469343 | 8_4:-34640037 | None:intergenic |
| TAGCCCTGATGACGGGGTCT+GGG | 0.470117 | 8_4:-34641416 | None:intergenic |
| TGATGACGGGGTCTGGGTAG+CGG | 0.470305 | 8_4:-34641410 | None:intergenic |
| CAAGAACAGAGAAAAGCATA+AGG | 0.471422 | 8_4:+34641554 | Msa1324470:CDS |
| TGACACCATCAAGTTGGATC+TGG | 0.473032 | 8_4:+34641440 | Msa1324470:CDS |
| AGCTTAATACCCTTACCCTT+GGG | 0.483433 | 8_4:-34641684 | None:intergenic |
| GGTATCTCTTCCCAAGGGTA+AGG | 0.487613 | 8_4:+34641674 | Msa1324470:CDS |
| TTACAGTCATCGAGGAAGCT+AGG | 0.496234 | 8_4:+34641706 | Msa1324470:CDS |
| AAGCTTAATACCCTTACCCT+TGG | 0.502359 | 8_4:-34641685 | None:intergenic |
| CTTTGATTTCATAATCAACC+AGG | 0.504163 | 8_4:-34642158 | None:intergenic |
| GGCACCAGTGCCTAGTCACC+TGG | 0.509421 | 8_4:+34642140 | Msa1324470:intron |
| GAACTAGAAGTTGAAGTTGA+GGG | 0.511400 | 8_4:-34641879 | None:intergenic |
| ACTTATCCAGCTGGATTCAT+GGG | 0.514100 | 8_4:+34640104 | Msa1324470:CDS |
| CCATACCTTAACACCTATGA+TGG | 0.520450 | 8_4:+34641378 | Msa1324470:CDS |
| CATCATAGGTGTTAAGGTAT+GGG | 0.527232 | 8_4:-34641377 | None:intergenic |
| TTCATACCCATGAATCCAGC+TGG | 0.529071 | 8_4:-34640110 | None:intergenic |
| CATCTCTGACTGAGTGGAGA+CGG | 0.531082 | 8_4:-34640841 | None:intergenic |
| TAGGCTCCAAAACCCTCGTC+CGG | 0.535399 | 8_4:+34639942 | Msa1324470:intron |
| TTGGCAAGGGCACAAAGCCA+TGG | 0.537474 | 8_4:+34641652 | Msa1324470:CDS |
| GGCTAATGACACCATCAAGT+TGG | 0.539972 | 8_4:+34641434 | Msa1324470:CDS |
| TCATCGAGGAAGCTAGGAAG+AGG | 0.541078 | 8_4:+34641712 | Msa1324470:CDS |
| TGCAGCAGCCTCCACACTTG+AGG | 0.544564 | 8_4:+34639427 | None:intergenic |
| ATCCACGTGCAGGATGCTAC+TGG | 0.550260 | 8_4:+34641591 | Msa1324470:CDS |
| TCATAATCAACCAGGTGACT+AGG | 0.551117 | 8_4:-34642150 | None:intergenic |
| CTGGTTGATTATGAAATCAA+AGG | 0.559820 | 8_4:+34642159 | Msa1324470:three_prime_UTR |
| GTTACCGGTGGTAAGAATAG+AGG | 0.559880 | 8_4:+34641516 | Msa1324470:CDS |
| CACCATCAAGTTGGATCTGG+AGG | 0.560278 | 8_4:+34641443 | Msa1324470:CDS |
| CAATGTGTTCACTATTGGCA+AGG | 0.561451 | 8_4:+34641638 | Msa1324470:CDS |
| TGTCAAGCATCCAATGCTTG+GGG | 0.568821 | 8_4:-34639824 | None:intergenic |
| AGTCAGAGATGATGAGGCTA+AGG | 0.568863 | 8_4:+34640853 | Msa1324470:CDS |
| GTCCGGACCACACAAATCTA+GGG | 0.570496 | 8_4:+34639959 | Msa1324470:CDS |
| AGCTAGGAAGAGGGCTGCTG+CGG | 0.574575 | 8_4:+34641722 | Msa1324470:CDS |
| GCCATGGGTATCTCTTCCCA+AGG | 0.583131 | 8_4:+34641668 | Msa1324470:CDS |
| TTTCGCAAAATCAAAATGAG+TGG | 0.585832 | 8_4:-34639990 | None:intergenic |
| GATTTGTGTGGTCCGGACGA+GGG | 0.588860 | 8_4:-34639954 | None:intergenic |
| GATTGAAGAAGCATTTGAAG+AGG | 0.590583 | 8_4:+34639793 | Msa1324470:CDS |
| ATTTGAGACAATCCACGTGC+AGG | 0.592997 | 8_4:+34641581 | Msa1324470:CDS |
| GGTAAGAATAGAGGACGTGT+TGG | 0.595253 | 8_4:+34641525 | Msa1324470:CDS |
| TCAGTGCAATTCGGGCAGAA+AGG | 0.596836 | 8_4:+34641351 | Msa1324470:CDS |
| AAGAACAGAGAAAAGCATAA+GGG | 0.598361 | 8_4:+34641555 | Msa1324470:CDS |
| ACGTCCTCTATTCTTACCAC+CGG | 0.599307 | 8_4:-34641520 | None:intergenic |
| GTATCTCTTCCCAAGGGTAA+GGG | 0.600286 | 8_4:+34641675 | Msa1324470:CDS |
| CCACTCAGTCAGAGATGATG+AGG | 0.601236 | 8_4:+34640847 | Msa1324470:CDS |
| TGGCAAGGGCACAAAGCCAT+GGG | 0.601941 | 8_4:+34641653 | Msa1324470:CDS |
| TCCTGACTTTGCCGTCAACA+AGG | 0.608758 | 8_4:-34640073 | None:intergenic |
| AGAACTAGAAGTTGAAGTTG+AGG | 0.609730 | 8_4:-34641880 | None:intergenic |
| CTACCCAGACCCCGTCATCA+GGG | 0.613237 | 8_4:+34641413 | Msa1324470:CDS |
| GACCAGTAGCATCCTGCACG+TGG | 0.616253 | 8_4:-34641593 | None:intergenic |
| ACTGACAAGACTTATCCAGC+TGG | 0.621794 | 8_4:+34640095 | Msa1324470:CDS |
| CTTTGGTATCATAAAGCAGA+CGG | 0.627128 | 8_4:-34640811 | None:intergenic |
| CCTCATCATCTCTGACTGAG+TGG | 0.630230 | 8_4:-34640847 | None:intergenic |
| TGACTGAGTGGAGACGGAAG+CGG | 0.632899 | 8_4:-34640835 | None:intergenic |
| GGTGTCATTAGCCCTGATGA+CGG | 0.635671 | 8_4:-34641424 | None:intergenic |
| CATCGAGGAAGCTAGGAAGA+GGG | 0.635832 | 8_4:+34641713 | Msa1324470:CDS |
| TGTCATTAGCCCTGATGACG+GGG | 0.637880 | 8_4:-34641422 | None:intergenic |
| AAAAGAAACCTCAAGTGTGG+AGG | 0.644602 | 8_4:-34639435 | None:intergenic |
| AATGTGTTCACTATTGGCAA+GGG | 0.644607 | 8_4:+34641639 | Msa1324470:CDS |
| CGTCTGCTTTATGATACCAA+AGG | 0.648327 | 8_4:+34640812 | Msa1324470:CDS |
| ATGTGAATGTAACAGGCTAG+AGG | 0.650282 | 8_4:+34639771 | Msa1324470:intron |
| GTCAAGCATCCAATGCTTGG+GGG | 0.650283 | 8_4:-34639823 | None:intergenic |
| ATGGCAGTTCAAGCTCTGCA+AGG | 0.650875 | 8_4:+34641323 | Msa1324470:intron |
| CCCTTGGGAAGAGATACCCA+TGG | 0.652851 | 8_4:-34641669 | None:intergenic |
| AGACATTCCCTAGATTTGTG+TGG | 0.654592 | 8_4:-34639966 | None:intergenic |
| CCATGGGTATCTCTTCCCAA+GGG | 0.685421 | 8_4:+34641669 | Msa1324470:CDS |
| TGGATGCTTGACAAATTGGG+TGG | 0.687057 | 8_4:+34639834 | Msa1324470:CDS |
| AATGTCGTTATGGTTACCGG+TGG | 0.694899 | 8_4:+34641504 | Msa1324470:CDS |
| TATTAAGCTTACAGTCATCG+AGG | 0.723795 | 8_4:+34641698 | Msa1324470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCATTAAATTTGATGTT+GGG | + | chr8_4:34641481-34641500 | Msa1324470:CDS | 15.0% |
| !!! | TTGAATATCTTTATCAATTT+TGG | + | chr8_4:34641815-34641834 | Msa1324470:three_prime_UTR | 15.0% |
| !!! | TTTATTTTCATCTTATCAAA+AGG | + | chr8_4:34641962-34641981 | Msa1324470:intron | 15.0% |
| !!! | GAAATTATGATTTTAGATTA+TGG | + | chr8_4:34642009-34642028 | Msa1324470:intron | 15.0% |
| !! | TTATAAACAGATTGTGAATA+TGG | - | chr8_4:34639580-34639599 | None:intergenic | 20.0% |
| !!! | AATCATCAATTTTTTTACCA+AGG | - | chr8_4:34640195-34640214 | None:intergenic | 20.0% |
| !!! | ACTTTTCATGTATTATATCT+GGG | + | chr8_4:34640267-34640286 | Msa1324470:intron | 20.0% |
| !! | ATGCAAATAAATAGGTTATA+AGG | + | chr8_4:34640360-34640379 | Msa1324470:intron | 20.0% |
| !! | TAAGTTTCTAATGTAGTTTA+TGG | - | chr8_4:34640424-34640443 | None:intergenic | 20.0% |
| !!! | TTGTATGATATTTTGTATTC+TGG | + | chr8_4:34640678-34640697 | Msa1324470:intron | 20.0% |
| !! | GATTTCATTAAATTTGATGT+TGG | + | chr8_4:34641480-34641499 | Msa1324470:CDS | 20.0% |
| !! | TTTTCAATCTCATTTCGTAA+TGG | + | chr8_4:34639550-34639569 | Msa1324470:intron | 25.0% |
| !!! | AAACACAATAATGACTTGTT+TGG | - | chr8_4:34639744-34639763 | None:intergenic | 25.0% |
| ! | GATATATATGTGAATGTAAC+AGG | + | chr8_4:34639764-34639783 | Msa1324470:intron | 25.0% |
| !! | GACTGATGTAATTTTTGTAT+AGG | + | chr8_4:34639923-34639942 | Msa1324470:intron | 25.0% |
| !! | GACTTTTCATGTATTATATC+TGG | + | chr8_4:34640266-34640285 | Msa1324470:intron | 25.0% |
| !!! | ATGTTTGTATAGAGTATTGA+AGG | + | chr8_4:34640307-34640326 | Msa1324470:intron | 25.0% |
| !!! | TGTTTGTATAGAGTATTGAA+GGG | + | chr8_4:34640308-34640327 | Msa1324470:intron | 25.0% |
| ! | TCAAGCTTATGCAAATAAAT+AGG | + | chr8_4:34640352-34640371 | Msa1324470:intron | 25.0% |
| ! | CAAAATAAGCATAATCCAAA+CGG | + | chr8_4:34640487-34640506 | Msa1324470:intron | 25.0% |
| ! | AAAATAAGCATAATCCAAAC+GGG | + | chr8_4:34640488-34640507 | Msa1324470:intron | 25.0% |
| ! | TTGTCTTCAGAAAAAATCAT+GGG | - | chr8_4:34640529-34640548 | None:intergenic | 25.0% |
| ! | TTTGTCTTCAGAAAAAATCA+TGG | - | chr8_4:34640530-34640549 | None:intergenic | 25.0% |
| !!! | ATTTTTTCTGAAGACAAAAC+AGG | + | chr8_4:34640532-34640551 | Msa1324470:intron | 25.0% |
| ! | ATGAAAAACATTGCAAATAC+TGG | - | chr8_4:34640606-34640625 | None:intergenic | 25.0% |
| ! | CATATGCAGTAATCAAATAA+AGG | - | chr8_4:34640881-34640900 | None:intergenic | 25.0% |
| ! | TACATAAATCTTATTCGTGT+CGG | - | chr8_4:34641045-34641064 | None:intergenic | 25.0% |
| ! | TATAGTATTTAATTATGCGC+CGG | + | chr8_4:34641063-34641082 | Msa1324470:intron | 25.0% |
| ! | TAATAACATGGACATGAAAA+TGG | - | chr8_4:34641224-34641243 | None:intergenic | 25.0% |
| ! | GTCCATGTTATTATATGAAT+TGG | + | chr8_4:34641231-34641250 | Msa1324470:intron | 25.0% |
| ! | CTCCAATTCATATAATAACA+TGG | - | chr8_4:34641236-34641255 | None:intergenic | 25.0% |
| ! | GCAAACAAAATATGTTTACA+AGG | - | chr8_4:34641265-34641284 | None:intergenic | 25.0% |
| !! | TTTTATAATCTGAGCAACTT+TGG | + | chr8_4:34641849-34641868 | Msa1324470:three_prime_UTR | 25.0% |
| !!! | GTTTTTGTTATTATTCTAGC+TGG | + | chr8_4:34641903-34641922 | Msa1324470:three_prime_UTR | 25.0% |
| ! | AAAACAAAATCAAAAAGCCA+TGG | - | chr8_4:34642101-34642120 | None:intergenic | 25.0% |
| CTGCTTAACATAAAATTCAG+TGG | - | chr8_4:34639612-34639631 | None:intergenic | 30.0% | |
| TTTCGCAAAATCAAAATGAG+TGG | - | chr8_4:34639993-34640012 | None:intergenic | 30.0% | |
| CAATTATTCTAGACGAAGAT+CGG | - | chr8_4:34640141-34640160 | None:intergenic | 30.0% | |
| ! | ATCTGGGTATTGTAAGTAAA+AGG | + | chr8_4:34640283-34640302 | Msa1324470:intron | 30.0% |
| TAGAAACTTATGAGTAGTAC+TGG | + | chr8_4:34640434-34640453 | Msa1324470:intron | 30.0% | |
| ! | TTTGCAATGTTTTTCATGTC+TGG | + | chr8_4:34640609-34640628 | Msa1324470:intron | 30.0% |
| TTCCTTGTATATGATGTACA+TGG | + | chr8_4:34641304-34641323 | Msa1324470:intron | 30.0% | |
| ! | AAGAACAGAGAAAAGCATAA+GGG | + | chr8_4:34641555-34641574 | Msa1324470:CDS | 30.0% |
| ! | AGTTGCTGCTTAAATATCTA+TGG | + | chr8_4:34641755-34641774 | Msa1324470:exon | 30.0% |
| ! | ATTCTAGCTGGATATTGTAA+TGG | + | chr8_4:34641915-34641934 | Msa1324470:three_prime_UTR | 30.0% |
| !!! | TGGTGATTGTTTTGAAATCA+AGG | - | chr8_4:34642081-34642100 | None:intergenic | 30.0% |
| TGATTTCAAAACAATCACCA+TGG | + | chr8_4:34642081-34642100 | Msa1324470:intron | 30.0% | |
| ! | CTTTGATTTCATAATCAACC+AGG | - | chr8_4:34642161-34642180 | None:intergenic | 30.0% |
| AGAAAAAGAAACCTCAAGTG+TGG | - | chr8_4:34639441-34639460 | None:intergenic | 35.0% | |
| ! | TTTCTTTTTCTCTCTAGCGT+TGG | + | chr8_4:34639450-34639469 | Msa1324470:five_prime_UTR | 35.0% |
| GCTCTGTTAATCTCACAATA+TGG | + | chr8_4:34639484-34639503 | Msa1324470:exon | 35.0% | |
| !! | GATTGAAGAAGCATTTGAAG+AGG | + | chr8_4:34639793-34639812 | Msa1324470:CDS | 35.0% |
| CATTGGATGCTTGACAAATT+GGG | + | chr8_4:34639831-34639850 | Msa1324470:CDS | 35.0% | |
| TGAACTAAGCAGAATCCAAA+CGG | - | chr8_4:34640335-34640354 | None:intergenic | 35.0% | |
| ATCATGGGATTCCATTATTC+AGG | - | chr8_4:34640514-34640533 | None:intergenic | 35.0% | |
| !! | TGACTCATTTGATTTGTCTG+TGG | + | chr8_4:34640712-34640731 | Msa1324470:intron | 35.0% |
| !!! | GGAAGCTCTCATTTGTTTTA+GGG | - | chr8_4:34640793-34640812 | None:intergenic | 35.0% |
| CTTTGGTATCATAAAGCAGA+CGG | - | chr8_4:34640814-34640833 | None:intergenic | 35.0% | |
| TTCATGATTGCTATGAAGCA+CGG | + | chr8_4:34640970-34640989 | Msa1324470:intron | 35.0% | |
| TACATTCATGATGTGAAGCA+CGG | - | chr8_4:34641131-34641150 | None:intergenic | 35.0% | |
| TGCCATGTACATCATATACA+AGG | - | chr8_4:34641309-34641328 | None:intergenic | 35.0% | |
| CATCATAGGTGTTAAGGTAT+GGG | - | chr8_4:34641380-34641399 | None:intergenic | 35.0% | |
| ! | CAAGAACAGAGAAAAGCATA+AGG | + | chr8_4:34641554-34641573 | Msa1324470:CDS | 35.0% |
| AATGTGTTCACTATTGGCAA+GGG | + | chr8_4:34641639-34641658 | Msa1324470:CDS | 35.0% | |
| TATTAAGCTTACAGTCATCG+AGG | + | chr8_4:34641698-34641717 | Msa1324470:CDS | 35.0% | |
| GAACTAGAAGTTGAAGTTGA+GGG | - | chr8_4:34641882-34641901 | None:intergenic | 35.0% | |
| AGAACTAGAAGTTGAAGTTG+AGG | - | chr8_4:34641883-34641902 | None:intergenic | 35.0% | |
| GAAATCAAGGCTTCAGAATT+GGG | - | chr8_4:34642068-34642087 | None:intergenic | 35.0% | |
| TGAAATCAAGGCTTCAGAAT+TGG | - | chr8_4:34642069-34642088 | None:intergenic | 35.0% | |
| AAAAGAAACCTCAAGTGTGG+AGG | - | chr8_4:34639438-34639457 | None:intergenic | 40.0% | |
| ATGTGAATGTAACAGGCTAG+AGG | + | chr8_4:34639771-34639790 | Msa1324470:intron | 40.0% | |
| TTGTCAAGCATCCAATGCTT+GGG | - | chr8_4:34639828-34639847 | None:intergenic | 40.0% | |
| TTTGTCAAGCATCCAATGCT+TGG | - | chr8_4:34639829-34639848 | None:intergenic | 40.0% | |
| GCATTGGATGCTTGACAAAT+TGG | + | chr8_4:34639830-34639849 | Msa1324470:CDS | 40.0% | |
| AGACATTCCCTAGATTTGTG+TGG | - | chr8_4:34639969-34639988 | None:intergenic | 40.0% | |
| TGAGAATAGCGATGACTTCA+CGG | - | chr8_4:34640040-34640059 | None:intergenic | 40.0% | |
| ACTTATCCAGCTGGATTCAT+GGG | + | chr8_4:34640104-34640123 | Msa1324470:CDS | 40.0% | |
| !! | TTTGCGCAGTTAATTTGCCT+TGG | + | chr8_4:34640175-34640194 | Msa1324470:intron | 40.0% |
| GAACTAAGCAGAATCCAAAC+GGG | - | chr8_4:34640334-34640353 | None:intergenic | 40.0% | |
| TTAGGGATTGAGACAACATC+TGG | - | chr8_4:34640776-34640795 | None:intergenic | 40.0% | |
| !! | CGGAAGCTCTCATTTGTTTT+AGG | - | chr8_4:34640794-34640813 | None:intergenic | 40.0% |
| CGTCTGCTTTATGATACCAA+AGG | + | chr8_4:34640812-34640831 | Msa1324470:CDS | 40.0% | |
| TATGAAGCACGGATACTGAT+AGG | + | chr8_4:34640981-34641000 | Msa1324470:intron | 40.0% | |
| ATGAAGCACGGATACTGATA+GGG | + | chr8_4:34640982-34641001 | Msa1324470:intron | 40.0% | |
| ! | ATTTAATTATGCGCCGGTGT+TGG | + | chr8_4:34641069-34641088 | Msa1324470:intron | 40.0% |
| AAGGTTCGTTCAGTGCAATT+CGG | + | chr8_4:34641342-34641361 | Msa1324470:CDS | 40.0% | |
| CCATCATAGGTGTTAAGGTA+TGG | - | chr8_4:34641381-34641400 | None:intergenic | 40.0% | |
| CCATACCTTAACACCTATGA+TGG | + | chr8_4:34641378-34641397 | Msa1324470:CDS | 40.0% | |
| TGATGTTGGGAATGTCGTTA+TGG | + | chr8_4:34641494-34641513 | Msa1324470:CDS | 40.0% | |
| CTGGTCAATGTGTTCACTAT+TGG | + | chr8_4:34641633-34641652 | Msa1324470:CDS | 40.0% | |
| CAATGTGTTCACTATTGGCA+AGG | + | chr8_4:34641638-34641657 | Msa1324470:CDS | 40.0% | |
| AGCTTAATACCCTTACCCTT+GGG | - | chr8_4:34641687-34641706 | None:intergenic | 40.0% | |
| AAGCTTAATACCCTTACCCT+TGG | - | chr8_4:34641688-34641707 | None:intergenic | 40.0% | |
| TTACCTCATGTCAATGCTCA+AGG | + | chr8_4:34642119-34642138 | Msa1324470:intron | 40.0% | |
| TCATAATCAACCAGGTGACT+AGG | - | chr8_4:34642153-34642172 | None:intergenic | 40.0% | |
| !! | CTCTCTAGCGTTGGAACTTT+TGG | + | chr8_4:34639459-34639478 | Msa1324470:five_prime_UTR | 45.0% |
| TGTCAAGCATCCAATGCTTG+GGG | - | chr8_4:34639827-34639846 | None:intergenic | 45.0% | |
| TGGATGCTTGACAAATTGGG+TGG | + | chr8_4:34639834-34639853 | Msa1324470:CDS | 45.0% | |
| TTCCCTAGATTTGTGTGGTC+CGG | - | chr8_4:34639964-34639983 | None:intergenic | 45.0% | |
| CAACGACATGTCCTTGTTGA+CGG | + | chr8_4:34640062-34640081 | Msa1324470:CDS | 45.0% | |
| ACTGACAAGACTTATCCAGC+TGG | + | chr8_4:34640095-34640114 | Msa1324470:CDS | 45.0% | |
| GACTTATCCAGCTGGATTCA+TGG | + | chr8_4:34640103-34640122 | Msa1324470:CDS | 45.0% | |
| TTCATACCCATGAATCCAGC+TGG | - | chr8_4:34640113-34640132 | None:intergenic | 45.0% | |
| ATCCAAACGGGCCTGAATAA+TGG | + | chr8_4:34640500-34640519 | Msa1324470:intron | 45.0% | |
| TTCCATTATTCAGGCCCGTT+TGG | - | chr8_4:34640505-34640524 | None:intergenic | 45.0% | |
| AGTCAGAGATGATGAGGCTA+AGG | + | chr8_4:34640853-34640872 | Msa1324470:CDS | 45.0% | |
| ACTGATAGGGACACACATCA+CGG | + | chr8_4:34640995-34641014 | Msa1324470:intron | 45.0% | |
| AGGTTCGTTCAGTGCAATTC+GGG | + | chr8_4:34641343-34641362 | Msa1324470:CDS | 45.0% | |
| TGCGACCATCATAGGTGTTA+AGG | - | chr8_4:34641386-34641405 | None:intergenic | 45.0% | |
| GGCTAATGACACCATCAAGT+TGG | + | chr8_4:34641434-34641453 | Msa1324470:CDS | 45.0% | |
| !! | TGACACCATCAAGTTGGATC+TGG | + | chr8_4:34641440-34641459 | Msa1324470:CDS | 45.0% |
| TTCCTCCAGATCCAACTTGA+TGG | - | chr8_4:34641448-34641467 | None:intergenic | 45.0% | |
| GGGAATGTCGTTATGGTTAC+CGG | + | chr8_4:34641501-34641520 | Msa1324470:CDS | 45.0% | |
| AATGTCGTTATGGTTACCGG+TGG | + | chr8_4:34641504-34641523 | Msa1324470:CDS | 45.0% | |
| GTTACCGGTGGTAAGAATAG+AGG | + | chr8_4:34641516-34641535 | Msa1324470:CDS | 45.0% | |
| ACGTCCTCTATTCTTACCAC+CGG | - | chr8_4:34641523-34641542 | None:intergenic | 45.0% | |
| GGTAAGAATAGAGGACGTGT+TGG | + | chr8_4:34641525-34641544 | Msa1324470:CDS | 45.0% | |
| ! | ATTTGAGACAATCCACGTGC+AGG | + | chr8_4:34641581-34641600 | Msa1324470:CDS | 45.0% |
| TCATGAGTTTGCAACTCGTC+TGG | + | chr8_4:34641614-34641633 | Msa1324470:CDS | 45.0% | |
| GTATCTCTTCCCAAGGGTAA+GGG | + | chr8_4:34641675-34641694 | Msa1324470:CDS | 45.0% | |
| TTACAGTCATCGAGGAAGCT+AGG | + | chr8_4:34641706-34641725 | Msa1324470:CDS | 45.0% | |
| GCTCTCGTTATGTCATCAAC+TGG | - | chr8_4:34641988-34642007 | None:intergenic | 45.0% | |
| AGGCTTCAGAATTGGGCATT+AGG | - | chr8_4:34642061-34642080 | None:intergenic | 45.0% | |
| GTCAAGCATCCAATGCTTGG+GGG | - | chr8_4:34639826-34639845 | None:intergenic | 50.0% | |
| GTCCGGACCACACAAATCTA+GGG | + | chr8_4:34639959-34639978 | Msa1324470:CDS | 50.0% | |
| TCCTTGTTGACGGCAAAGTC+AGG | + | chr8_4:34640072-34640091 | Msa1324470:CDS | 50.0% | |
| TCCTGACTTTGCCGTCAACA+AGG | - | chr8_4:34640076-34640095 | None:intergenic | 50.0% | |
| !! | AGAGTATTGAAGGGCCCGTT+TGG | + | chr8_4:34640317-34640336 | Msa1324470:intron | 50.0% |
| CATCTCTGACTGAGTGGAGA+CGG | - | chr8_4:34640844-34640863 | None:intergenic | 50.0% | |
| CCTCATCATCTCTGACTGAG+TGG | - | chr8_4:34640850-34640869 | None:intergenic | 50.0% | |
| CCACTCAGTCAGAGATGATG+AGG | + | chr8_4:34640847-34640866 | Msa1324470:CDS | 50.0% | |
| TGTGAAGCACGGACACTACT+CGG | - | chr8_4:34641120-34641139 | None:intergenic | 50.0% | |
| ATGGCAGTTCAAGCTCTGCA+AGG | + | chr8_4:34641323-34641342 | Msa1324470:intron | 50.0% | |
| TCAGTGCAATTCGGGCAGAA+AGG | + | chr8_4:34641351-34641370 | Msa1324470:CDS | 50.0% | |
| ! | TGTCATTAGCCCTGATGACG+GGG | - | chr8_4:34641425-34641444 | None:intergenic | 50.0% |
| ! | GTGTCATTAGCCCTGATGAC+GGG | - | chr8_4:34641426-34641445 | None:intergenic | 50.0% |
| !! | GGTGTCATTAGCCCTGATGA+CGG | - | chr8_4:34641427-34641446 | None:intergenic | 50.0% |
| !! | CACCATCAAGTTGGATCTGG+AGG | + | chr8_4:34641443-34641462 | Msa1324470:CDS | 50.0% |
| CCATGGGTATCTCTTCCCAA+GGG | + | chr8_4:34641669-34641688 | Msa1324470:CDS | 50.0% | |
| GGTATCTCTTCCCAAGGGTA+AGG | + | chr8_4:34641674-34641693 | Msa1324470:CDS | 50.0% | |
| TCATCGAGGAAGCTAGGAAG+AGG | + | chr8_4:34641712-34641731 | Msa1324470:CDS | 50.0% | |
| CATCGAGGAAGCTAGGAAGA+GGG | + | chr8_4:34641713-34641732 | Msa1324470:CDS | 50.0% | |
| CAGAATTGGGCATTAGGCAG+AGG | - | chr8_4:34642055-34642074 | None:intergenic | 50.0% | |
| !! | GTGCCTTGAGCATTGACATG+AGG | - | chr8_4:34642125-34642144 | None:intergenic | 50.0% |
| TAGGCTCCAAAACCCTCGTC+CGG | + | chr8_4:34639942-34639961 | Msa1324470:intron | 55.0% | |
| GATTTGTGTGGTCCGGACGA+GGG | - | chr8_4:34639957-34639976 | None:intergenic | 55.0% | |
| AGATTTGTGTGGTCCGGACG+AGG | - | chr8_4:34639958-34639977 | None:intergenic | 55.0% | |
| CGTCCGGACCACACAAATCT+AGG | + | chr8_4:34639958-34639977 | Msa1324470:CDS | 55.0% | |
| TGACTGAGTGGAGACGGAAG+CGG | - | chr8_4:34640838-34640857 | None:intergenic | 55.0% | |
| CACATCACGGACACACGTCA+CGG | + | chr8_4:34641008-34641027 | Msa1324470:intron | 55.0% | |
| CCAGTGTCAGAGTCCAACAC+CGG | - | chr8_4:34641085-34641104 | None:intergenic | 55.0% | |
| GCACGGACACTACTCGGTTT+AGG | - | chr8_4:34641114-34641133 | None:intergenic | 55.0% | |
| ! | GCGGATTGTGCGACCATCAT+AGG | - | chr8_4:34641394-34641413 | None:intergenic | 55.0% |
| ATCCACGTGCAGGATGCTAC+TGG | + | chr8_4:34641591-34641610 | Msa1324470:CDS | 55.0% | |
| ! | TTGGCAAGGGCACAAAGCCA+TGG | + | chr8_4:34641652-34641671 | Msa1324470:CDS | 55.0% |
| ! | TGGCAAGGGCACAAAGCCAT+GGG | + | chr8_4:34641653-34641672 | Msa1324470:CDS | 55.0% |
| GCCATGGGTATCTCTTCCCA+AGG | + | chr8_4:34641668-34641687 | Msa1324470:CDS | 55.0% | |
| CCCTTGGGAAGAGATACCCA+TGG | - | chr8_4:34641672-34641691 | None:intergenic | 55.0% | |
| TCAACCAGGTGACTAGGCAC+TGG | - | chr8_4:34642147-34642166 | None:intergenic | 55.0% | |
| GGCTCAATGCCCCCAAGCAT+TGG | + | chr8_4:34639814-34639833 | Msa1324470:CDS | 60.0% | |
| ! | TGTGGTCCGGACGAGGGTTT+TGG | - | chr8_4:34639951-34639970 | None:intergenic | 60.0% |
| ! | CCGGTGTTGGACTCTGACAC+TGG | + | chr8_4:34641082-34641101 | Msa1324470:intron | 60.0% |
| !! | TGATGACGGGGTCTGGGTAG+CGG | - | chr8_4:34641413-34641432 | None:intergenic | 60.0% |
| CTACCCAGACCCCGTCATCA+GGG | + | chr8_4:34641413-34641432 | Msa1324470:CDS | 60.0% | |
| !! | TAGCCCTGATGACGGGGTCT+GGG | - | chr8_4:34641419-34641438 | None:intergenic | 60.0% |
| !! | TTAGCCCTGATGACGGGGTC+TGG | - | chr8_4:34641420-34641439 | None:intergenic | 60.0% |
| GACCAGTAGCATCCTGCACG+TGG | - | chr8_4:34641596-34641615 | None:intergenic | 60.0% | |
| AGCTAGGAAGAGGGCTGCTG+CGG | + | chr8_4:34641722-34641741 | Msa1324470:CDS | 60.0% | |
| GTGGAGACGGAAGCGGCCTT+TGG | - | chr8_4:34640831-34640850 | None:intergenic | 65.0% | |
| GCTACCCAGACCCCGTCATC+AGG | + | chr8_4:34641412-34641431 | Msa1324470:CDS | 65.0% | |
| GGCACCAGTGCCTAGTCACC+TGG | + | chr8_4:34642140-34642159 | Msa1324470:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 34639431 | 34642181 | 34639431 | ID=Msa1324470;Name=Msa1324470 |
| chr8_4 | mRNA | 34639431 | 34642181 | 34639431 | ID=Msa1324470-mRNA-1;Parent=Msa1324470;Name=Msa1324470-mRNA-1;_AED=0.11;_eAED=0.11;_QI=72|1|1|1|0.6|0.5|6|238|265 |
| chr8_4 | exon | 34639431 | 34639505 | 34639431 | ID=Msa1324470-mRNA-1:exon:11022;Parent=Msa1324470-mRNA-1 |
| chr8_4 | exon | 34639786 | 34639863 | 34639786 | ID=Msa1324470-mRNA-1:exon:11023;Parent=Msa1324470-mRNA-1 |
| chr8_4 | exon | 34639945 | 34640125 | 34639945 | ID=Msa1324470-mRNA-1:exon:11024;Parent=Msa1324470-mRNA-1 |
| chr8_4 | exon | 34640777 | 34640874 | 34640777 | ID=Msa1324470-mRNA-1:exon:11025;Parent=Msa1324470-mRNA-1 |
| chr8_4 | exon | 34641330 | 34641971 | 34641330 | ID=Msa1324470-mRNA-1:exon:11026;Parent=Msa1324470-mRNA-1 |
| chr8_4 | exon | 34642148 | 34642181 | 34642148 | ID=Msa1324470-mRNA-1:exon:11027;Parent=Msa1324470-mRNA-1 |
| chr8_4 | five_prime_UTR | 34639431 | 34639502 | 34639431 | ID=Msa1324470-mRNA-1:five_prime_utr;Parent=Msa1324470-mRNA-1 |
| chr8_4 | CDS | 34639503 | 34639505 | 34639503 | ID=Msa1324470-mRNA-1:cds;Parent=Msa1324470-mRNA-1 |
| chr8_4 | CDS | 34639786 | 34639863 | 34639786 | ID=Msa1324470-mRNA-1:cds;Parent=Msa1324470-mRNA-1 |
| chr8_4 | CDS | 34639945 | 34640125 | 34639945 | ID=Msa1324470-mRNA-1:cds;Parent=Msa1324470-mRNA-1 |
| chr8_4 | CDS | 34640777 | 34640874 | 34640777 | ID=Msa1324470-mRNA-1:cds;Parent=Msa1324470-mRNA-1 |
| chr8_4 | CDS | 34641330 | 34641767 | 34641330 | ID=Msa1324470-mRNA-1:cds;Parent=Msa1324470-mRNA-1 |
| chr8_4 | three_prime_UTR | 34641768 | 34641971 | 34641768 | ID=Msa1324470-mRNA-1:three_prime_utr;Parent=Msa1324470-mRNA-1 |
| chr8_4 | three_prime_UTR | 34642148 | 34642181 | 34642148 | ID=Msa1324470-mRNA-1:three_prime_utr;Parent=Msa1324470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
